Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 104 of 433
Found at i:31912968 original size:207 final size:207
Alignment explanation
Indices: 31912606--31913944 Score: 2300
Period size: 207 Copynumber: 6.5 Consensus size: 207
31912596 CGACGGAGAG
* * * *
31912606 CAAATCGAAGACATAACTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
** *
31912671 GTGTCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTTGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * * *
31912736 CATAGCAGATCTGGCCTTTAGATGTTTGTACTGAAGTAAGATCCAAGATGGTTTAGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
31912801 GCTTACAAGGAA
196 GCTTACAAGGAA
*
31912813 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTATGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* * *
31912878 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCATCTCCATATTCGACGAAGGGCAAACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
31912943 CATAGCAAATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
31913008 GCTTACAAGGAA
196 GCTTACAAGGAA
* *
31913020 CAAATCGAAGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCTAATATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
*
31913085 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
31913150 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
31913215 GCTTACAAGGAA
196 GCTTACAAGGAA
* * * *
31913227 CAAATTGAAGACATAGCTGATTTGGCTTTCATGTGTTTACATTGAAACAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* *
31913292 GCATCTCTGTATTGTCAGAGAACAAATCGATGTTTGGCATCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * *
31913357 CATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGCAAGATCTAAGATGGTTTGGCATCCTTAT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
31913422 GCTTACAAGGAA
196 GCTTACAAGGAA
31913434 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
*
31913499 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTAGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
* * * *
31913564 CATAGCAGATCTGACCTTTAGATGTTTATACTGAAGCAAGATCTAAGATAGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
31913629 GCTTACAAGGAA
196 GCTTACAAGGAA
*
31913641 CAAATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
* * **
31913706 ACATATCTGTATTGTTTGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
*
31913771 CATAGCAGATCTGGCCTTCAGATGTTTATACTGGAGCAAGATCCAAGATGGTTTGGCATCCTTGT
131 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
31913836 GCTTACAAGGAA
196 GCTTACAAGGAA
* *
31913848 CAAATCGAAGACATAGCTGATTTGACTTTCACGTGTTTACGTTGAAGTAAGTCTAAGATGATTTG
1 CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
*
31913913 GCATCTCTGTATTGTCAGAGAACAAATTGAAG
66 GCATCTCTGTATTGTCAGAGAACAAATCGAAG
31913945 AAGCAGATTT
Statistics
Matches: 1065, Mismatches: 67, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
207 1065 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (207 bp):
CAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTG
GCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACA
CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAA
Found at i:31914364 original size:17 final size:17
Alignment explanation
Indices: 31914344--31914424 Score: 117
Period size: 17 Copynumber: 4.6 Consensus size: 17
31914334 CAATGATATG
31914344 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
31914361 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
*
31914379 CAATTTTAGATATGATA
1 CAATCTTAGATATGATA
31914396 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
31914415 CAATCTTAGA
1 CAATCTTAGA
31914425 AGATATGATT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
17 29 0.51
18 15 0.26
19 13 0.23
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:31914382 original size:35 final size:36
Alignment explanation
Indices: 31914336--31914424 Score: 153
Period size: 35 Copynumber: 2.5 Consensus size: 36
31914326 ATAATCTTCA
31914336 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
*
31914372 ATGAT-TGCAATTTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
*
31914407 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
31914425 AGATATGATT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
35 34 0.69
36 15 0.31
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:31914412 original size:22 final size:20
Alignment explanation
Indices: 31914351--31914433 Score: 65
Period size: 19 Copynumber: 4.5 Consensus size: 20
31914341 ATGCAATCTT
31914351 AGATATGATACAATCTT---
1 AGATATGATACAATCTTAGA
* *
31914368 AGATATGATTGCAAT-TT--T
1 AGATATGA-TACAATCTTAGA
31914386 AGATATGATACAATCTTAG-
1 AGATATGATACAATCTTAGA
*
31914405 ATATGAT-ATACAATCTTAGA
1 AGAT-ATGATACAATCTTAGA
31914425 AGATATGAT
1 AGATATGAT
31914434 TTTGTAATCT
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
17 15 0.28
18 15 0.28
19 17 0.31
20 7 0.13
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.36
Consensus pattern (20 bp):
AGATATGATACAATCTTAGA
Found at i:31914429 original size:17 final size:17
Alignment explanation
Indices: 31914338--31914430 Score: 66
Period size: 17 Copynumber: 5.3 Consensus size: 17
31914328 AATCTTCAAT
*
31914338 GATATGCAATCTTAG-A
1 GATATACAATCTTAGAA
*
31914354 TATGATACAATCTTAGATA
1 GAT-ATACAATCTTAGA-A
* *
31914373 TGAT-TGCAATTTTAG-A
1 -GATATACAATCTTAGAA
*
31914389 TATGATACAATCTTAGATA
1 GAT-ATACAATCTTAGA-A
31914408 TGATATACAATCTTAGAA
1 -GATATACAATCTTAGAA
31914426 GATAT
1 GATAT
31914431 GATTTTGTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
15 2 0.03
16 3 0.05
17 25 0.42
18 10 0.17
19 15 0.25
20 4 0.07
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.37
Consensus pattern (17 bp):
GATATACAATCTTAGAA
Found at i:31916090 original size:27 final size:27
Alignment explanation
Indices: 31916055--31916231 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
31916045 ACAATTAAGA
31916055 AATAACCTTTGTGGCATACTCTGAAAG
1 AATAACCTTTGTGGCATACTCTGAAAG
* * *
31916082 AATAGCCTTTATGG-AGTTCTCTGAAAG
1 AATAACCTTTGTGGCA-TACTCTGAAAG
** ** *
31916109 AGCAACCTTTGTGGTGTACTATGAAAG
1 AATAACCTTTGTGGCATACTCTGAAAG
* * *
31916136 AATAATCTTTGTGGCGTACTATGAAAG
1 AATAACCTTTGTGGCATACTCTGAAAG
* * *
31916163 AATAACTTTTATGGCATACTCTAAAAG
1 AATAACCTTTGTGGCATACTCTGAAAG
*
31916190 AATAACATTTGTGGCATACTCT-ATAAG
1 AATAACCTTTGTGGCATACTCTGA-AAG
*
31916217 AATAGCCTTTGTGGC
1 AATAACCTTTGTGGC
31916232 GTGTTCTAAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.02
27 121 0.98
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (27 bp):
AATAACCTTTGTGGCATACTCTGAAAG
Found at i:31916232 original size:81 final size:82
Alignment explanation
Indices: 31916050--31916233 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 82
31916040 ACACGACAAT
* * * * * *
31916050 TAAGAAATAACCTTTGTGGCATACTCTGAAAGAATAGCCTTTATGGAGTTCTCTGAAAGAGCAAC
1 TAAG-AATAACCTTTGTGGCGTACTATGAAAGAATAACCTTTATGGAGTACTCTAAAAGAACAAC
* **
31916115 CTTTGTGGTGTACTATGA
65 ATTTGTGGCATACTATGA
* * *
31916133 -AAGAATAATCTTTGTGGCGTACTATGAAAGAATAACTTTTATGGCA-TACTCTAAAAGAATAAC
1 TAAGAATAACCTTTGTGGCGTACTATGAAAGAATAACCTTTATGG-AGTACTCTAAAAGAACAAC
*
31916196 ATTTGTGGCATACTCT-A
65 ATTTGTGGCATACTATGA
*
31916213 TAAGAATAGCCTTTGTGGCGT
1 TAAGAATAACCTTTGTGGCGT
31916234 GTTCTAATTG
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 1 0.01
81 79 0.94
82 4 0.05
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (82 bp):
TAAGAATAACCTTTGTGGCGTACTATGAAAGAATAACCTTTATGGAGTACTCTAAAAGAACAACA
TTTGTGGCATACTATGA
Found at i:31917232 original size:13 final size:12
Alignment explanation
Indices: 31917202--31917235 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
31917192 AAAGATAAAA
31917202 TATCATCTTTTT
1 TATCATCTTTTT
*
31917214 TGTCATCTTTTT
1 TATCATCTTTTT
31917226 TCATCATCTT
1 T-ATCATCTT
31917236 CCCCAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.15, C:0.21, G:0.03, T:0.62
Consensus pattern (12 bp):
TATCATCTTTTT
Found at i:31918363 original size:24 final size:24
Alignment explanation
Indices: 31918286--31918364 Score: 81
Period size: 24 Copynumber: 3.3 Consensus size: 24
31918276 AAGCTATTCG
* * *
31918286 GAGCTTTCTGTTAATGGCTCTT-T
1 GAGCTTCCTGATATTGGCTCTTAT
* *
31918309 AGAGCTACCTGATATTGGCTCGTAT
1 -GAGCTTCCTGATATTGGCTCTTAT
31918334 GAGCTTCCTGAT-TTAGGCTCTTAT
1 GAGCTTCCTGATATT-GGCTCTTAT
31918358 GAGCTTC
1 GAGCTTC
31918365 TTGTTATAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
23 2 0.04
24 43 0.93
25 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (24 bp):
GAGCTTCCTGATATTGGCTCTTAT
Found at i:31927404 original size:20 final size:20
Alignment explanation
Indices: 31927379--31927427 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
31927369 AAATATTACT
31927379 TTAAAT-ATAAAATATTCAAA
1 TTAAATCAT-AAATATTCAAA
* *
31927399 TTAAATCATCATTATTCAAA
1 TTAAATCATAAATATTCAAA
31927419 TTAAATCAT
1 TTAAATCAT
31927428 CATTCATAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (20 bp):
TTAAATCATAAATATTCAAA
Found at i:31927428 original size:20 final size:20
Alignment explanation
Indices: 31927391--31927431 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
31927381 AAATATAAAA
31927391 TATTCAAATTAAATCATCAT
1 TATTCAAATTAAATCATCAT
31927411 TATTCAAATTAAATCATCAT
1 TATTCAAATTAAATCATCAT
31927431 T
1 T
31927432 CATAGCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (20 bp):
TATTCAAATTAAATCATCAT
Found at i:31929783 original size:21 final size:21
Alignment explanation
Indices: 31929737--31929784 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
31929727 TTGGGAGACT
*
31929737 ACTCAACCCACCAACCACTAC
1 ACTCCACCCACCAACCACTAC
*
31929758 ACTCCACCCTACCAGCCA-TAC
1 ACTCCACCC-ACCAACCACTAC
31929779 ACTCCA
1 ACTCCA
31929785 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCACCAACCACTAC
Found at i:31929959 original size:21 final size:20
Alignment explanation
Indices: 31929921--31929963 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
31929911 ATCCCAGTCC
31929921 CATGCATCAGATAATAACAA
1 CATGCATCAGATAATAACAA
31929941 CATGCATGCAG-TAAATAACAA
1 CATGCAT-CAGAT-AATAACAA
31929962 CA
1 CA
31929964 GTCAAACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.49, C:0.21, G:0.12, T:0.19
Consensus pattern (20 bp):
CATGCATCAGATAATAACAA
Found at i:31931513 original size:26 final size:26
Alignment explanation
Indices: 31931477--31931586 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
31931467 CATGAAATTC
*
31931477 TTATCATGAAACATTTACGTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
31931503 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
31931529 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
31931555 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
31931581 TTATCA
1 TTATCA
31931587 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:31936414 original size:12 final size:12
Alignment explanation
Indices: 31936397--31936439 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
31936387 AGTACTACCT
31936397 CGGCCTCGACCA
1 CGGCCTCGACCA
31936409 CGGCCTCGACCA
1 CGGCCTCGACCA
31936421 CGGCCTCGACCA
1 CGGCCTCGACCA
*
31936433 TGGCCTC
1 CGGCCTC
31936440 TTCCCCGAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.14, C:0.49, G:0.26, T:0.12
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:31939588 original size:26 final size:26
Alignment explanation
Indices: 31939552--31939661 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
31939542 CATGAAATTC
31939552 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
31939578 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
31939604 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
31939630 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
31939656 TTATCA
1 TTATCA
31939662 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:31940490 original size:63 final size:63
Alignment explanation
Indices: 31940390--31940514 Score: 214
Period size: 63 Copynumber: 2.0 Consensus size: 63
31940380 CTTAAGCAAC
* * *
31940390 CTTAGTACATCATTAACGTGATTCATGCAAGTCACATAACATCATCTATCATCTTGAAGGTAT
1 CTTAGTACATCATTAACATGATACATGCAAGTCACATAACATCATCTATCATCTTAAAGGTAT
*
31940453 CTTAGTACATCATTAACATGATACATGCAAGTTACATAACATCATCTATCATCTTAAAGGTA
1 CTTAGTACATCATTAACATGATACATGCAAGTCACATAACATCATCTATCATCTTAAAGGTA
31940515 AGGTACAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (63 bp):
CTTAGTACATCATTAACATGATACATGCAAGTCACATAACATCATCTATCATCTTAAAGGTAT
Found at i:31941637 original size:28 final size:28
Alignment explanation
Indices: 31941606--31941662 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
31941596 TTTAAATCAG
31941606 TGGTGTGGTGCCTATTTTAATAAATAAT
1 TGGTGTGGTGCCTATTTTAATAAATAAT
* *
31941634 TGGTGTGGTGCCTATTTTGATTAATAAT
1 TGGTGTGGTGCCTATTTTAATAAATAAT
31941662 T
1 T
31941663 ACTTTTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.07, G:0.23, T:0.46
Consensus pattern (28 bp):
TGGTGTGGTGCCTATTTTAATAAATAAT
Found at i:31953118 original size:17 final size:18
Alignment explanation
Indices: 31953082--31953120 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
31953072 TTTTTCTTAC
*
31953082 TTTATCTATTTTTGAATT
1 TTTATCTACTTTTGAATT
31953100 TTTATCTACTTTT-AATT
1 TTTATCTACTTTTGAATT
31953117 TTTA
1 TTTA
31953121 GAATTTTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.23, C:0.08, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTATCTACTTTTGAATT
Found at i:31955873 original size:47 final size:47
Alignment explanation
Indices: 31955813--31955943 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 47
31955803 CGGTAGTGCG
* * *
31955813 AATAAATTATCAATATATGCAAACAAGCTGCCAATAACGGTAATGTA
1 AATAAATTGTCAATATATGCAAACAAGCTGCCAATAACGATAATGCA
* * *
31955860 GATAAATTGTCAATATATGCAAACAAGCTGCTAGTAACGATAATGCA
1 AATAAATTGTCAATATATGCAAACAAGCTGCCAATAACGATAATGCA
* * * * *
31955907 AATAAAATGCCAATATATGTACACAAGATGCCAATAA
1 AATAAATTGTCAATATATGCAAACAAGCTGCCAATAA
31955944 TGTAATAAAT
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.47, C:0.15, G:0.14, T:0.24
Consensus pattern (47 bp):
AATAAATTGTCAATATATGCAAACAAGCTGCCAATAACGATAATGCA
Found at i:31957099 original size:24 final size:24
Alignment explanation
Indices: 31957072--31957157 Score: 73
Period size: 24 Copynumber: 3.5 Consensus size: 24
31957062 GCGTTTCCTC
*
31957072 GCACACATAGTGCTATATAATCTT
1 GCACACATAGTGCCATATAATCTT
* * * *
31957096 GCACATATAGTGCCATGTAGTTTTT
1 GCACACATAGTGCCATATA-ATCTT
* ** * *
31957121 GTACACATAGTGCCGCATAACCTC
1 GCACACATAGTGCCATATAATCTT
31957145 GCACACATAGTGC
1 GCACACATAGTGC
31957158 TGAAATTTCT
Statistics
Matches: 46, Mismatches: 15, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
24 29 0.63
25 17 0.37
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (24 bp):
GCACACATAGTGCCATATAATCTT
Found at i:31960759 original size:27 final size:27
Alignment explanation
Indices: 31960711--31960870 Score: 148
Period size: 27 Copynumber: 5.9 Consensus size: 27
31960701 ACGAGGCTGC
* * *
31960711 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
31960738 CAAATATTGTAGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
31960764 CAGATATATGTGGCAAAGCCACCAAAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
31960791 CAGATAATTGTGGCATAGCCACCAG-CA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
31960818 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
31960845 TAGATAAATTGTGGCATAGCCACCAG
1 CAGAT--ATTGTGGCAGAGCCACCAG
31960871 GACGCTTCCT
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
26 9 0.08
27 80 0.73
28 18 0.17
29 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:31960801 original size:54 final size:54
Alignment explanation
Indices: 31960711--31960870 Score: 207
Period size: 54 Copynumber: 3.0 Consensus size: 54
31960701 ACGAGGCTGC
* * * * *
31960711 CAGATAT-TGTGACAAAGTCACCAGATACAAAT-ATTGTAGCAGAGCCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
* *
31960764 CAGATATATGTGGCAAAGCCACCAAATCAGATAATTGTGGCATAGCCACCAGCA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
* *
31960818 CAGATATATGTGGCAGAGCCACCAGATTAGATAAATTGTGGCATAGCCACCAG
1 CAGATATATGTGGCAAAGCCACCAGATCAGAT-AATTGTGGCATAGCCACCAG
31960871 GACGCTTCCT
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
53 11 0.12
54 63 0.67
55 20 0.21
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:31962942 original size:48 final size:48
Alignment explanation
Indices: 31962884--31963415 Score: 893
Period size: 48 Copynumber: 11.0 Consensus size: 48
31962874 ATATACACAC
* *
31962884 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
31962932 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
31962980 ATCTCATATATATTTCACATTAGCCATTCGACTTTACCACATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
31963030 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
31963078 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
31963126 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
31963174 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
31963222 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
31963270 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
31963318 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
31963366 ATCTCATATATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
31963414 AT
1 AT
31963416 ATTTGTCTTG
Statistics
Matches: 454, Mismatches: 28, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
48 410 0.90
50 44 0.10
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:31963247 original size:144 final size:144
Alignment explanation
Indices: 31962884--31963415 Score: 983
Period size: 144 Copynumber: 3.7 Consensus size: 144
31962874 ATATACACAC
* * *
31962884 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
31962949 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGACTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
31963014 TACCACATATATATAT
131 TACCAC--ATATATAT
31963030 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
31963095 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
31963160 TACCACATATATAT
131 TACCACATATATAT
31963174 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
31963239 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
31963304 TACCACATATATAT
131 TACCACATATATAT
*
31963318 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
31963383 TATTAGCCATTCGGCTTTACCACATATACATAT
66 CACTAGCCATTCGGCTTTACCACATATACATAT
31963416 ATTTGTCTTG
Statistics
Matches: 379, Mismatches: 7, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
144 247 0.65
146 132 0.35
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (144 bp):
ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
TACCACATATATAT
Found at i:31968790 original size:5 final size:5
Alignment explanation
Indices: 31968780--31968830 Score: 57
Period size: 5 Copynumber: 9.4 Consensus size: 5
31968770 GAATCCTTGT
*
31968780 TAAAA TAAAA TAAAG TGGTAAAA TAAAA TAAAA TAAAA TAAAA GTAAAA
1 TAAAA TAAAA TAAAA T---AAAA TAAAA TAAAA TAAAA TAAAA -TAAAA
31968829 TA
1 TA
31968831 CATATAGAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 31 0.77
6 5 0.12
8 4 0.10
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:31973034 original size:34 final size:35
Alignment explanation
Indices: 31972988--31973074 Score: 99
Period size: 34 Copynumber: 2.5 Consensus size: 35
31972978 AGGTAAGTAT
31972988 ATGT-AAGCTTATATTGAACTTGAT-TATTCGATTAC
1 ATGTGAAG-TTATATTGAACTT-ATATATTCGATTAC
* **
31973023 ATGTGAA-TTATATTGAACTTATATATTCGGTTTT
1 ATGTGAAGTTATATTGAACTTATATATTCGATTAC
*
31973057 ATGTGAAGTTATTTTGAA
1 ATGTGAAGTTATATTGAA
31973075 TGTGCATATT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
33 2 0.04
34 28 0.62
35 13 0.29
36 2 0.04
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.46
Consensus pattern (35 bp):
ATGTGAAGTTATATTGAACTTATATATTCGATTAC
Found at i:31976286 original size:30 final size:30
Alignment explanation
Indices: 31976250--31976310 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
31976240 TCCTTAACTC
*
31976250 AAACTTTTTCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
31976280 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
31976310 A
1 A
31976311 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:31977827 original size:30 final size:30
Alignment explanation
Indices: 31977791--31977862 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
31977781 GCTATCAATT
*
31977791 ATGAAAAGGGATGGTGATGACCATCAAA-C
1 ATGAAAAGGGATGGTGACGACCATCAAATC
31977820 AATGAAAAGGGATGGTGACGACCATCAAATC
1 -ATGAAAAGGGATGGTGACGACCATCAAATC
31977851 ATGAAAAGGGAT
1 ATGAAAAGGGAT
31977863 ATCTTCGACT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 39 0.98
31 1 0.03
ACGTcount: A:0.43, C:0.12, G:0.28, T:0.17
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATCAAATC
Found at i:31977885 original size:30 final size:30
Alignment explanation
Indices: 31977851--31977922 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 30
31977841 CCATCAAATC
* * *
31977851 ATGAAAAGGGATATCTTCGACTGTCGAACT
1 ATGAAAAGGGATAGCTTCAACTATCGAACT
* *
31977881 ATGAAAAGGGATAGCTTCAATTATCGAATT
1 ATGAAAAGGGATAGCTTCAACTATCGAACT
31977911 ATGAAAAGGGAT
1 ATGAAAAGGGAT
31977923 GGGTCAACCA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCAACTATCGAACT
Found at i:31985007 original size:12 final size:12
Alignment explanation
Indices: 31984990--31985014 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
31984980 TGAAATATGC
31984990 TATTTATATTAT
1 TATTTATATTAT
31985002 TATTTATATTAT
1 TATTTATATTAT
31985014 T
1 T
31985015 TATACTTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATTTATATTAT
Found at i:31985027 original size:21 final size:20
Alignment explanation
Indices: 31984990--31985031 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
31984980 TGAAATATGC
*
31984990 TATTTATATTATTATTTATAT
1 TATTTATATTATCATTT-TAT
31985011 TATTTATACTTA-CATTTTAT
1 TATTTATA-TTATCATTTTAT
31985031 T
1 T
31985032 TATTATGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 12 0.63
22 3 0.16
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTTATATTATCATTTTAT
Found at i:31990074 original size:39 final size:40
Alignment explanation
Indices: 31989961--31990105 Score: 145
Period size: 40 Copynumber: 3.6 Consensus size: 40
31989951 TTGAATGATG
* * *
31989961 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * *
31990001 TCCGGACTAAGAT-CCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
31990041 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
31990081 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
31990106 AGCGAGTCAT
Statistics
Matches: 86, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
39 29 0.34
40 50 0.58
41 7 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:31990111 original size:79 final size:80
Alignment explanation
Indices: 31989961--31990112 Score: 184
Period size: 79 Copynumber: 1.9 Consensus size: 80
31989951 TTGAATGATG
* *
31989961 TCCGAGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTTC
1 TCCGAGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTC
*
31990026 GTGCGAGTTAATAAA
66 GAGCGAGTTAATAAA
* * * **
31990041 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTATAACCGGGCTTTG-TCCCGAAGGCAT
1 TCCGAGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
*
31990103 TTGAGCGAGT
64 TCGAGCGAGT
31990113 CATTATATCC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.02
79 43 0.70
80 17 0.28
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGAGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTC
GAGCGAGTTAATAAA
Found at i:31999735 original size:50 final size:50
Alignment explanation
Indices: 31999619--31999910 Score: 358
Period size: 50 Copynumber: 5.9 Consensus size: 50
31999609 ATCAAAGTTG
* * *
31999619 ATGCCATGTCCCAGACATGGTCTTACACTAACTCTCGTATATCGAGG-CG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCA
* * * * *
31999668 ATGTCATGTCCCAGACATGATCTTACATTGGCTCTCATCTATCG-GTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAG-GCCA
* * * * *
31999718 ATGTCATGTCCCAGACATGGTATTACACTAACTCTCATATCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCA
* * * *
31999768 ATGCCATGTCTCAGACATGTTCTTACGCTAGCTCCCATAT-TCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCA
*
31999817 ATGCCATG-CCCTAGACATGGTCTTACAACTAGCTCTCATATCTCGAGGCCA
1 ATGCCATGTCCC-AGACATGGTCTTAC-ACTAGCTCTCATATATCGAGGCCA
*
31999868 ATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATC
31999911 CGGTCTATTC
Statistics
Matches: 206, Mismatches: 30, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
48 3 0.01
49 67 0.33
50 101 0.49
51 32 0.16
52 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCA
Found at i:32009238 original size:38 final size:38
Alignment explanation
Indices: 32009195--32009267 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
32009185 AGATTAAATT
*
32009195 AAAATTCACCTATACAATTACACATTAATTAAAGTATC
1 AAAATTCACATATACAATTACACATTAATTAAAGTATC
*
32009233 AAAATTCACATATACAATTGCACATTAATTAAAGT
1 AAAATTCACATATACAATTACACATTAATTAAAGT
32009268 TTATGTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (38 bp):
AAAATTCACATATACAATTACACATTAATTAAAGTATC
Found at i:32010349 original size:58 final size:57
Alignment explanation
Indices: 32010277--32010429 Score: 175
Period size: 58 Copynumber: 2.7 Consensus size: 57
32010267 TATCAAGAAT
* * * **
32010277 TAATTTGGAGAAAAAAAATTCAAATCCCAATATGAGATTAATCGAC-AAGTTCAAAAA
1 TAATTTGGACAAAAAAAATTCAAATCCCTATATAAGAACAATCG-CGAAGTTCAAAAA
* *
32010334 CTAATTTGGACAAAAAAAAATTCAAAT-CCTATAAAAGAACAATTGCGAAGTTCAAAAA
1 -TAATTTGGAC-AAAAAAAATTCAAATCCCTATATAAGAACAATCGCGAAGTTCAAAAA
* * *
32010392 TAATTTAGACAAAAAAATTTCAAAACCCTATATAAGAA
1 TAATTTGGACAAAAAAAATTCAAATCCCTATATAAGAA
32010430 TATTGTCAAG
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
56 13 0.16
57 21 0.26
58 32 0.40
59 15 0.19
ACGTcount: A:0.53, C:0.13, G:0.10, T:0.24
Consensus pattern (57 bp):
TAATTTGGACAAAAAAAATTCAAATCCCTATATAAGAACAATCGCGAAGTTCAAAAA
Found at i:32010453 original size:57 final size:55
Alignment explanation
Indices: 32010269--32010453 Score: 165
Period size: 57 Copynumber: 3.2 Consensus size: 55
32010259 CAAGGAAATA
* * * * * *
32010269 TCAAGAATTAATTTGGAGAAAAAAAATTCAAATCCCAATATGAGATTAATCGACAAGT
1 TCAA-AATTAATTTGGACAAAAAAAATTCAAAACCCTATATAAGAAT-ATTG-CAAGT
* * * *
32010327 TCAAAAACTAATTTGGACAAAAAAAAATTC-AAATCCTATAAAAGAACAATTGCGAAGT
1 TC-AAAATTAATTTGGAC-AAAAAAAATTCAAAACCCTATATAAGAA-TATTGC-AAGT
* * *
32010385 TCAAAAATAATTTAGACAAAAAAATTTCAAAACCCTATATAAGAATATTGTCAAGT
1 TCAAAATTAATTTGGACAAAAAAAATTCAAAACCCTATATAAGAATATTG-CAAGT
32010441 TCAAATATTAATT
1 TCAAA-ATTAATT
32010454 CGCATAAAAA
Statistics
Matches: 103, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
56 23 0.22
57 35 0.34
58 32 0.31
59 13 0.13
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (55 bp):
TCAAAATTAATTTGGACAAAAAAAATTCAAAACCCTATATAAGAATATTGCAAGT
Found at i:32012828 original size:46 final size:46
Alignment explanation
Indices: 32012758--32013059 Score: 391
Period size: 46 Copynumber: 6.7 Consensus size: 46
32012748 TGTCATAGTG
* * * * * *
32012758 TCTTTCAACTATGGTTTTACTCATTTTC-TGTCATGTTACCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
*** * *
32012804 TCTTTCAACCATGGTCTTGTTCATTTTATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
32012850 TCTTTCAACCATGATCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
32012896 TCTTCCAACCATGGTCTTACACATTTC--AT-A--TTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
32012937 TCTTTCAACCATGATCTTACACATTTCATATCAGGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* * *
32012983 TCTTCCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGCA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
32013029 TCTTTCAACCATGGTCTTACACATTTCATAT
1 TCTTTCAACCATGGTCTTACACATTTCATAT
32013060 TAGAGAGCAC
Statistics
Matches: 227, Mismatches: 23, Indels: 12
0.87 0.09 0.05
Matches are distributed among these distances:
41 36 0.16
43 3 0.01
44 3 0.01
45 3 0.01
46 182 0.80
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:32012960 original size:87 final size:90
Alignment explanation
Indices: 32012796--32013059 Score: 390
Period size: 87 Copynumber: 2.9 Consensus size: 90
32012786 TGTCATGTTA
* *** *
32012796 CCATGGTATCTTTCAACCATGGTCTTGTTCATTTTATATCACGTTGCCATGGTATCTTTCAACCA
1 CCATGGTATCTTCCAACCATGGTCTTACACATTTCA-ATCA-GTTGCCATGGTATCTTTCAACCA
32012861 TGATCTTACACATTTCATATCAGGTTG
64 TGATCTTACACATTTCATATCAGGTTG
32012888 CCATGGTATCTTCCAACCATGGTCTTACACATTTC-AT-A-TTGCCATGGTATCTTTCAACCATG
1 CCATGGTATCTTCCAACCATGGTCTTACACATTTCAATCAGTTGCCATGGTATCTTTCAACCATG
32012950 ATCTTACACATTTCATATCAGGTTG
66 ATCTTACACATTTCATATCAGGTTG
* * *
32012975 TCATGGTATCTTCCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGCATCTTTCAACCA
1 CCATGGTATCTTCCAACCATGGTCTTACACATTTCA-ATCA-GTTGCCATGGTATCTTTCAACCA
*
32013040 TGGTCTTACACATTTCATAT
64 TGATCTTACACATTTCATAT
32013060 TAGAGAGCAC
Statistics
Matches: 158, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
87 83 0.53
89 3 0.02
90 3 0.02
92 69 0.44
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (90 bp):
CCATGGTATCTTCCAACCATGGTCTTACACATTTCAATCAGTTGCCATGGTATCTTTCAACCATG
ATCTTACACATTTCATATCAGGTTG
Found at i:32013038 original size:133 final size:133
Alignment explanation
Indices: 32012796--32013060 Score: 422
Period size: 133 Copynumber: 2.0 Consensus size: 133
32012786 TGTCATGTTA
* *** * *
32012796 CCATGGTATCTTTCAACCATGGTCTTGTTCATTTTATATCACGTTGCCATGGTATCTTTCAACCA
1 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCACGTTGCCATGGTATCTTCCAACCA
*
32012861 TGATCTTACACATTTCATATCAGGTTGCCATGGTATCTTCCAACCATGGTCTTACACATTTCATA
66 TGATCTTACACATTTCATATCAGGTTGCCATGGCATCTTCCAACCATGGTCTTACACATTTCATA
32012926 TTG
131 TTG
* *
32012929 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGTTGTCATGGTATCTTCCAACCA
1 CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCACGTTGCCATGGTATCTTCCAACCA
* * *
32012994 TGGTCTTACACATTTCATATCAGGTTGTCATGGCATCTTTCAACCATGGTCTTACACATTTCATA
66 TGATCTTACACATTTCATATCAGGTTGCCATGGCATCTTCCAACCATGGTCTTACACATTTCATA
32013059 TT
131 TT
32013061 AGAGAGCACA
Statistics
Matches: 120, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
133 120 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (133 bp):
CCATGGTATCTTTCAACCATGATCTTACACATTTCATATCACGTTGCCATGGTATCTTCCAACCA
TGATCTTACACATTTCATATCAGGTTGCCATGGCATCTTCCAACCATGGTCTTACACATTTCATA
TTG
Found at i:32015231 original size:2 final size:2
Alignment explanation
Indices: 32015224--32015257 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
32015214 TGTTTTACTT
32015224 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32015258 ATAACAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32017518 original size:18 final size:18
Alignment explanation
Indices: 32017463--32017518 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
32017453 TATTGATTTC
* *
32017463 TTTATAAAAATACTAAAT
1 TTTATAAAATTACTAATT
* *
32017481 ATTAAAAAAGTTACTAATT
1 TTTATAAAA-TTACTAATT
*
32017500 TTTATAAAATTATTAATT
1 TTTATAAAATTACTAATT
32017518 T
1 T
32017519 AAAAATAATT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
18 16 0.53
19 14 0.47
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (18 bp):
TTTATAAAATTACTAATT
Found at i:32017537 original size:37 final size:37
Alignment explanation
Indices: 32017463--32017542 Score: 92
Period size: 37 Copynumber: 2.1 Consensus size: 37
32017453 TATTGATTTC
*
32017463 TTTATAAAAATACTAAATATTAAAAAAGTTACTAATT
1 TTTATAAAAATACTAAATATTAAAAAAATTACTAATT
* *
32017500 TTTATAAAATTA-TTAAT-TTAAAAATAATTACTGAATT
1 TTTATAAAAATACTAAATATTAAAAA-AATTACT-AATT
32017537 TCTTAT
1 T-TTAT
32017543 CATGTAAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
35 7 0.19
36 10 0.27
37 16 0.43
38 4 0.11
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.44
Consensus pattern (37 bp):
TTTATAAAAATACTAAATATTAAAAAAATTACTAATT
Found at i:32017959 original size:21 final size:21
Alignment explanation
Indices: 32017933--32017974 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
32017923 GATTAAGAGA
32017933 AAGTAAAATCTTAATATTTAC
1 AAGTAAAATCTTAATATTTAC
32017954 AAGTAAAATCTTAATATTTAC
1 AAGTAAAATCTTAATATTTAC
32017975 TTGTAGTGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.05, T:0.38
Consensus pattern (21 bp):
AAGTAAAATCTTAATATTTAC
Found at i:32020095 original size:12 final size:12
Alignment explanation
Indices: 32020080--32020114 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
32020070 AATGACTTAA
32020080 ATAATAACTTTC
1 ATAATAACTTTC
32020092 ATAATAACTTTC
1 ATAATAACTTTC
32020104 ATGAA-AACTTT
1 AT-AATAACTTT
32020115 TTAAAGTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 20 0.91
13 2 0.09
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (12 bp):
ATAATAACTTTC
Found at i:32030665 original size:16 final size:15
Alignment explanation
Indices: 32030637--32030674 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
32030627 GAACCGATTT
32030637 TATTTATTTTTTTAAA
1 TATTT-TTTTTTTAAA
32030653 TATTTTTTATTTTAAA
1 TATTTTTT-TTTTAAA
32030669 -ATTTTT
1 TATTTTT
32030675 CTAATTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTTTTTTTTAAA
Found at i:32035193 original size:14 final size:15
Alignment explanation
Indices: 32035166--32035194 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32035156 AATTTTATGA
32035166 ATTTCATGATGTGTT
1 ATTTCATGATGTGTT
32035181 ATTTCAT-ATGTGTT
1 ATTTCATGATGTGTT
32035195 GATGATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.21, C:0.07, G:0.17, T:0.55
Consensus pattern (15 bp):
ATTTCATGATGTGTT
Found at i:32035387 original size:50 final size:51
Alignment explanation
Indices: 32035310--32035438 Score: 172
Period size: 50 Copynumber: 2.5 Consensus size: 51
32035300 GACCATGGCA
*
32035310 ACAAGTGATAAGTGATAGCCTCGGCTACAATTATCAGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACAATTATCAGATCAAGGACAAA-TG
* * *
32035361 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACAATTATCAGATCAAGGACAAATG
* * *
32035411 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
32035439 CTGATCAGTG
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
50 42 0.61
51 27 0.39
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACAATTATCAGATCAAGGACAAATG
Found at i:32035452 original size:31 final size:31
Alignment explanation
Indices: 32035414--32035531 Score: 177
Period size: 31 Copynumber: 3.8 Consensus size: 31
32035404 ACAAATGACA
32035414 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
32035445 AGTGAAAAGTGGTAGCTTCTGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
32035476 AGTGAAAAGTGGTAG-TTCCTA-CTACCTGATC
1 AGTGAAAAGTGGTAGCTT-C-AGCTACCTGATC
*
32035507 AGTGAAAAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTAC
32035532 AAGTGACAAG
Statistics
Matches: 78, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
30 2 0.03
31 74 0.95
32 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:32035487 original size:62 final size:62
Alignment explanation
Indices: 32035414--32035531 Score: 195
Period size: 62 Copynumber: 1.9 Consensus size: 62
32035404 ACAAATGACA
*
32035414 AGTGAAAAGTGGTAGCTT-C-AGCTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATT
1 AGTGAAAAGTGGTAG-TTCCTA-CTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATT
32035476 AGTGAAAAGTGGTAGTTCCTACTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGTTCCTACTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTAC
32035532 AAGTGACAAG
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
61 2 0.04
62 50 0.94
63 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (62 bp):
AGTGAAAAGTGGTAGTTCCTACTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATT
Found at i:32035542 original size:7 final size:7
Alignment explanation
Indices: 32035530--32035558 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
32035520 AGCTTCGGCT
32035530 ACAAGTG
1 ACAAGTG
32035537 ACAAGTG
1 ACAAGTG
32035544 ACAAGTG
1 ACAAGTG
32035551 ACAAGTG
1 ACAAGTG
32035558 A
1 A
32035559 TTTCCGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:32035633 original size:47 final size:46
Alignment explanation
Indices: 32035563--32035686 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
32035553 AAGTGATTTC
* * *
32035563 CGTATAAGACCAAATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
** *
32035609 CTGTATAAGACCATATCTGGGATATGGCATTAGTGAGATATGTGATA
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
32035656 CGTGTAAGACCATAACTGGGCTATGGCATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
32035687 ATATATGAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:32035743 original size:42 final size:43
Alignment explanation
Indices: 32035657--32035754 Score: 123
Period size: 42 Copynumber: 2.3 Consensus size: 43
32035647 TATGTGATAC
* * *
32035657 GTGT-AAGACCATAACTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAAGACCATAGCTGGGCTATGGCATCGATATATAAAGAT
*
32035699 GTG-AAAGACCATAGCTGGGCTATGGCATC-ATTATTTAAAGAT
1 GTGTAAAGACCATAGCTGGGCTATGGCATCGA-TATATAAAGAT
32035741 GTGTAAA-ACCATAG
1 GTGTAAAGACCATAG
32035755 TTGAACTATG
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.02
42 45 0.92
43 3 0.06
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (43 bp):
GTGTAAAGACCATAGCTGGGCTATGGCATCGATATATAAAGAT
Found at i:32037983 original size:29 final size:29
Alignment explanation
Indices: 32037951--32038023 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
32037941 CTTCGAGCTC
* *
32037951 GCACACCCAGTGTCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
32037980 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
32038009 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
32038024 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:32052045 original size:14 final size:14
Alignment explanation
Indices: 32052004--32052046 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
32051994 TATTAATTTT
*
32052004 TTTTATAAATTTAA
1 TTTTATAAATATAA
* *
32052018 TTTAATTAATATAA
1 TTTTATAAATATAA
*
32052032 TTTTATAAAAATAA
1 TTTTATAAATATAA
32052046 T
1 T
32052047 ATATCTAGAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TTTTATAAATATAA
Found at i:32054899 original size:22 final size:22
Alignment explanation
Indices: 32054831--32054900 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
32054821 CTATACTCCT
*
32054831 AAAATGAGTAAGATCATAGCTGA
1 AAAATGAGTAAGACCATAGCT-A
* * * *
32054854 AAAATG-CTATG-GCATCAGGATA
1 AAAATGAGTAAGACCAT-A-GCTA
32054876 AAAATGAGTAAGACCATAGCTA
1 AAAATGAGTAAGACCATAGCTA
32054898 AAA
1 AAA
32054901 GATGTTATGG
Statistics
Matches: 35, Mismatches: 8, Indels: 9
0.67 0.15 0.17
Matches are distributed among these distances:
21 3 0.09
22 17 0.49
23 12 0.34
24 3 0.09
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (22 bp):
AAAATGAGTAAGACCATAGCTA
Found at i:32054944 original size:22 final size:22
Alignment explanation
Indices: 32054876--32054945 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 22
32054866 CATCAGGATA
32054876 AAAATGAGTAAGACCATAGCT-
1 AAAATGAGTAAGACCATAGCTG
* * *
32054897 AAAA-GATGTTATG-GCATCATGATG
1 AAAATGA-G-TAAGACCAT-A-GCTG
32054921 AAAATGAGTAAGACCATAGCTG
1 AAAATGAGTAAGACCATAGCTG
32054943 AAA
1 AAA
32054946 GACGCTATGA
Statistics
Matches: 36, Mismatches: 6, Indels: 13
0.65 0.11 0.24
Matches are distributed among these distances:
20 2 0.06
21 8 0.22
22 10 0.28
23 6 0.17
24 8 0.22
25 2 0.06
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.21
Consensus pattern (22 bp):
AAAATGAGTAAGACCATAGCTG
Found at i:32054961 original size:45 final size:45
Alignment explanation
Indices: 32054831--32054968 Score: 197
Period size: 45 Copynumber: 3.1 Consensus size: 45
32054821 CTATACTCCT
* * * *
32054831 AAAATGAGTAAGATCATAGCTGAAAAATGCTATGGCATCAGGATA
1 AAAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCATGATG
* *
32054876 AAAATGAGTAAGACCATAGCTAAAAGATGTTATGGCATCATGATG
1 AAAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCATGATG
* *
32054921 AAAATGAGTAAGACCATAGCTGAAAGACGCTATGACATCAT-ATG
1 AAAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCATGATG
32054965 AAAA
1 AAAA
32054969 CACGCCAGAA
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 7 0.08
45 76 0.92
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.22
Consensus pattern (45 bp):
AAAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCATGATG
Found at i:32063733 original size:43 final size:43
Alignment explanation
Indices: 32063672--32063757 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
32063662 TCTTTGCATA
32063672 TCTCACAAACTTTGCGGCCTTTATCCTTTCTTTTAGCTAACTT
1 TCTCACAAACTTTGCGGCCTTTATCCTTTCTTTTAGCTAACTT
32063715 TCTCACAAACTTTGCGGCCTTTATCCTTTCTTTTAGCTAACTT
1 TCTCACAAACTTTGCGGCCTTTATCCTTTCTTTTAGCTAACTT
32063758 CTTTCTTCAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (43 bp):
TCTCACAAACTTTGCGGCCTTTATCCTTTCTTTTAGCTAACTT
Found at i:32069231 original size:44 final size:45
Alignment explanation
Indices: 32069141--32069250 Score: 134
Period size: 44 Copynumber: 2.4 Consensus size: 45
32069131 ACAGAGCAGA
32069141 AATGAGCCATGTAAGTCCATATTAGAAATATGGATTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGATTTGGAGACAGG
* * *
32069187 ATTGAGCCATGTAAGTCCATATT-ATATATGGCA-TTGGGGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGG-ATTTGGAGACAGG
* **
32069231 AATAATTCATGTAAGTCCAT
1 AATGAGCCATGTAAGTCCAT
32069251 GTCAAAGACA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 33 0.59
45 1 0.02
46 22 0.39
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.29
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGATTTGGAGACAGG
Found at i:32073112 original size:5 final size:5
Alignment explanation
Indices: 32073102--32073151 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
32073092 GGCAATTAAG
* *
32073102 ATTTT ATTTT ATTTTT ATCTT ATCTT ATTTT A--TT ATCTTT ATTTT ATTTT
1 ATTTT ATTTT A-TTTT ATTTT ATTTT ATTTT ATTTT AT-TTT ATTTT ATTTT
32073152 GAAATTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
3 3 0.08
5 27 0.69
6 9 0.23
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (5 bp):
ATTTT
Found at i:32075869 original size:23 final size:23
Alignment explanation
Indices: 32075797--32075905 Score: 93
Period size: 23 Copynumber: 5.0 Consensus size: 23
32075787 CCTGATTAAT
32075797 ATACGACACAT-AAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
* * ** *
32075818 A-AAGACAGACGAGGTGCCTG--
1 ATACGACACATAAAGTGCCTGAA
* *
32075838 ATACAACACATAAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
* *
32075861 ATACGACACATAAAGTGCTTGAT
1 ATACGACACATAAAGTGCCTGAA
*
32075884 ATACAACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
32075906 TCAGAAAAGC
Statistics
Matches: 68, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
20 7 0.10
21 22 0.32
23 39 0.57
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.18
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:32075906 original size:23 final size:23
Alignment explanation
Indices: 32075831--32075906 Score: 102
Period size: 23 Copynumber: 3.4 Consensus size: 23
32075821 GACAGACGAG
*
32075831 GTGCCTG--ATACAACACATAAG
1 GTGCCTGATATACAACACATAAA
* *
32075852 GTGCCTGAAATACGACACATAAA
1 GTGCCTGATATACAACACATAAA
*
32075875 GTGCTTGATATACAACACATAAA
1 GTGCCTGATATACAACACATAAA
32075898 GTGCCTGAT
1 GTGCCTGAT
32075907 CAGAAAAGCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 7 0.15
23 40 0.85
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.22
Consensus pattern (23 bp):
GTGCCTGATATACAACACATAAA
Found at i:32076073 original size:35 final size:36
Alignment explanation
Indices: 32076034--32076107 Score: 98
Period size: 35 Copynumber: 2.1 Consensus size: 36
32076024 AAGATCACTT
*
32076034 TTCAATTATA-ATTTCACATTCA-AATCAATATACAG
1 TTCAATTATACA-TACACATTCACAATCAATATACAG
*
32076069 TTCAATTATACATACACATTCACCATTCAATATACAG
1 TTCAATTATACATACACATTCA-CAATCAATATACAG
32076106 TT
1 TT
32076108 TAACTTAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 19 0.56
36 1 0.03
37 14 0.41
ACGTcount: A:0.41, C:0.20, G:0.03, T:0.36
Consensus pattern (36 bp):
TTCAATTATACATACACATTCACAATCAATATACAG
Found at i:32076260 original size:47 final size:46
Alignment explanation
Indices: 32076191--32076453 Score: 161
Period size: 47 Copynumber: 5.6 Consensus size: 46
32076181 GTATAATGTT
* *
32076191 GATGCCATGTCACAGACATGGTCTTACACTGGCTGATTCATCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-ATTCATCAAGTC
*
32076238 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-CTCA-CATATCCGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATTCATCA-A---GT--C
* * * * *
32076288 GATGCCATGTCCCAGGCAGGGTCTTACACT-GACACATCTCGT-AACT-
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-C-TAT-TCATCAAGTC
* * * *
32076334 GATG-CATGTCCTAGACAT-GTCTTACACTAGCTTACGTCATGAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-TA-TTCATCAAGTC
* * *
32076380 GATG-AATGTCCCAGACAT-GTCTTACAATAGCTCTCGTC-TCAA-TACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTAT--TCATCAAGT--C
*
32076426 GATGCCATGTCTCAGACATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
32076454 TTGGCTCTCA
Statistics
Matches: 168, Mismatches: 27, Indels: 41
0.71 0.11 0.17
Matches are distributed among these distances:
44 18 0.11
45 21 0.12
46 39 0.23
47 44 0.26
48 10 0.06
49 2 0.01
50 30 0.18
52 1 0.01
53 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTATTCATCAAGTC
Found at i:32078056 original size:23 final size:21
Alignment explanation
Indices: 32077981--32078085 Score: 120
Period size: 21 Copynumber: 4.8 Consensus size: 21
32077971 CGATACATAA
* *
32077981 GTGCCTGAAACCACACACGAG
1 GTGCCTGATACGACACACGAG
32078002 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
*
32078023 GTGCCTGATACAACACACGAG
1 GTGCCTGATACGACACACGAG
** *
32078044 GTGCCTGAAATACGACACATAAA
1 GTGCCTG--ATACGACACACGAG
32078067 GTGCCTGATATACGACACA
1 GTGCCTG--ATACGACACA
32078086 TAAAGTGCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
21 46 0.62
23 28 0.38
ACGTcount: A:0.34, C:0.28, G:0.23, T:0.15
Consensus pattern (21 bp):
GTGCCTGATACGACACACGAG
Found at i:32078059 original size:44 final size:42
Alignment explanation
Indices: 32077979--32078076 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
32077969 TACGATACAT
* * *
32077979 AAGTGCCTGAAACCACACACGAGGTGCCTGATACGACACACG
1 AAGTGCCTGATACAACACACGAGGTGCCTGATACGACACACA
* *
32078021 AGGTGCCTGATACAACACACGAGGTGCCTGAAATACGACACATA
1 AAGTGCCTGATACAACACACGAGGTGCCTG--ATACGACACACA
32078065 AAGTGCCTGATA
1 AAGTGCCTGATA
32078077 TACGACACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 27 0.56
44 21 0.44
ACGTcount: A:0.35, C:0.27, G:0.23, T:0.15
Consensus pattern (42 bp):
AAGTGCCTGATACAACACACGAGGTGCCTGATACGACACACA
Found at i:32078086 original size:23 final size:23
Alignment explanation
Indices: 32078044--32078098 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
32078034 AACACACGAG
*
32078044 GTGCCTGAAATACGACACATAAA
1 GTGCCTGATATACGACACATAAA
32078067 GTGCCTGATATACGACACATAAA
1 GTGCCTGATATACGACACATAAA
32078090 GTGCCTGAT
1 GTGCCTGAT
32078099 CGGCAAAGCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (23 bp):
GTGCCTGATATACGACACATAAA
Found at i:32078250 original size:23 final size:24
Alignment explanation
Indices: 32078197--32078252 Score: 98
Period size: 23 Copynumber: 2.4 Consensus size: 24
32078187 AATTCTCAAT
32078197 TCAC-TTTCATTTCCAATTCAAGA
1 TCACTTTTCATTTCCAATTCAAGA
32078220 TCACTTTTC-TTTCCAATTCAAGA
1 TCACTTTTCATTTCCAATTCAAGA
32078243 TCACTTTTCA
1 TCACTTTTCA
32078253 ATTATAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 27 0.87
24 4 0.13
ACGTcount: A:0.27, C:0.27, G:0.04, T:0.43
Consensus pattern (24 bp):
TCACTTTTCATTTCCAATTCAAGA
Found at i:32079066 original size:23 final size:24
Alignment explanation
Indices: 32079017--32079067 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
32079007 AATAAATTAT
32079017 TTTATAACAAGTGTACATATATCTA
1 TTTATAACAAGTGTACA-ATATCTA
* *
32079042 TTTATTACAAGTGTAC-ATATGTA
1 TTTATAACAAGTGTACAATATCTA
32079065 TTT
1 TTT
32079068 GTTTAAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 9 0.38
25 15 0.62
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (24 bp):
TTTATAACAAGTGTACAATATCTA
Found at i:32079540 original size:14 final size:14
Alignment explanation
Indices: 32079505--32079544 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 14
32079495 AATTTAGATT
32079505 TTAT-TTTATTTTA
1 TTATCTTTATTTTA
32079518 --ATC-TTATTTTA
1 TTATCTTTATTTTA
32079529 TTATCTTTATTTTA
1 TTATCTTTATTTTA
32079543 TT
1 TT
32079545 TTGAAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
11 10 0.43
13 3 0.13
14 10 0.43
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (14 bp):
TTATCTTTATTTTA
Found at i:32083230 original size:113 final size:113
Alignment explanation
Indices: 32083032--32083258 Score: 427
Period size: 113 Copynumber: 2.0 Consensus size: 113
32083022 ATCTACTTTA
32083032 GACTTCTTATTATGGGCCTACGAGTCCCAAATCGATCATTGAAAACTAATCGGGACCATTCCGAG
1 GACTTCTTATTATGGGCCTACGAGTCCCAAATCGATCATTGAAAACTAATCGGGACCATTCCGAG
* *
32083097 TCCCTAAACCAACTATGAAAATTTCGTCATTGAACAGGTCACACGCCT
66 TCCCTAAACCAACTATGAAAATTTCATCATTGAACAGGTCACACACCT
*
32083145 GACTTCTTATTATGGGCCTACGAGTCCCAAATCGATCATTGAAACCTAATCGGGACCATTCCGAG
1 GACTTCTTATTATGGGCCTACGAGTCCCAAATCGATCATTGAAAACTAATCGGGACCATTCCGAG
32083210 TCCCTAAACCAACTATGAAAATTTCATCATTGAACAGGTCACACACCT
66 TCCCTAAACCAACTATGAAAATTTCATCATTGAACAGGTCACACACCT
32083258 G
1 G
32083259 TATGACCATT
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (113 bp):
GACTTCTTATTATGGGCCTACGAGTCCCAAATCGATCATTGAAAACTAATCGGGACCATTCCGAG
TCCCTAAACCAACTATGAAAATTTCATCATTGAACAGGTCACACACCT
Found at i:32087413 original size:46 final size:48
Alignment explanation
Indices: 32087212--32087530 Score: 241
Period size: 46 Copynumber: 6.8 Consensus size: 48
32087202 CGGGCAAGTT
*
32087212 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAACATCACCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATC-CCGAG
* * * * *
32087261 GTCGATGCCATGTCCCAAACATGGTTTTACACTAGCTCTCACATATCC-AT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACAT-CCCGAG
* * **
32087311 GCCGACGCCATGTCCCAGATATGGTCTTACACT-GAC--ACATTTCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTTACATCCCG-AG
* *
32087357 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCCCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCCCGAG
* * * *** *
32087403 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCACT-CGTCTTAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TTACATCCCGAG
* * *** *
32087449 GCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCT-CATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATCCCGAG
*
32087497 GCCGATG-CATGTCCCAGATAT-GTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
32087531 CCACAATAAT
Statistics
Matches: 219, Mismatches: 37, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.05
45 17 0.08
46 71 0.32
47 26 0.12
48 23 0.11
49 35 0.16
50 30 0.14
51 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCCCGAG
Found at i:32087478 original size:94 final size:92
Alignment explanation
Indices: 32087357--32087530 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 92
32087347 ACATTTCGTA
* ** *
32087357 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCCCGAGGCCGATGCATGTCCTAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAACGAGGCCGATGCATGTCCCAGA
32087421 CATGTCTTACACTAGCACTCGTCTTAAT
65 CATGTCTTACACTAGCACTCGTCTTAAT
* * *
32087449 GCCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAG
*
32087514 ATATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
32087531 CCACAATAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
92 7 0.10
93 13 0.18
94 50 0.70
95 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAACGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTCGTCTTAAT
Found at i:32087520 original size:140 final size:143
Alignment explanation
Indices: 32087212--32087530 Score: 373
Period size: 140 Copynumber: 2.2 Consensus size: 143
32087202 CGGGCAAGTT
*
32087212 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAACATCACCGAGGTCGATGCCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTAACATCACCGAGGCCGATGCCATGTCCC
* * * *
32087277 AAACATGGTTTTACACTAGCTCTCACATATCCATGCCGACGCCATGTCCCAGATATGGTCTTACA
64 AAACATGGTCTTACACTAGCACTCACATATCAATGCCGACGCCATGTCCCAGACATGGTCTTACA
*
32087342 CTGACACATTTCGTA
129 CTGACACATATCGTA
* * * * *
32087357 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTC-CCGAGGCCGATG-CATGTCCTAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTAACATCACCGAGGCCGATGCCATGTCCCAA
* * *
32087420 ACAT-GTCTTACACTAGCACTCGTC-T-T-AATGCCGATGCCATGTCTCAGACATGGTCTTACAC
66 ACATGGTCTTACACTAGCACTC-ACATATCAATGCCGACGCCATGTCCCAGACATGGTCTTACAC
* * *
32087481 TGGCTCTCATAAT-GTG
130 T-G-ACACAT-ATCGTA
*
32087497 GCCGATGCATGTCCCAGATATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
32087531 CCACAATAAT
Statistics
Matches: 151, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
138 32 0.21
139 2 0.01
140 54 0.36
141 14 0.09
142 11 0.07
143 17 0.11
144 14 0.09
145 7 0.05
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (143 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTAACATCACCGAGGCCGATGCCATGTCCCAA
ACATGGTCTTACACTAGCACTCACATATCAATGCCGACGCCATGTCCCAGACATGGTCTTACACT
GACACATATCGTA
Found at i:32090507 original size:2 final size:2
Alignment explanation
Indices: 32090500--32090526 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32090490 AATACAGACA
32090500 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
32090527 CCATTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32091906 original size:13 final size:13
Alignment explanation
Indices: 32091888--32091917 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
32091878 AATGCTTTTG
*
32091888 AAAAGTGTTGTGA
1 AAAAGTGATGTGA
32091901 AAAAGTGATGTGA
1 AAAAGTGATGTGA
32091914 AAAA
1 AAAA
32091918 TGCTTTTGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (13 bp):
AAAAGTGATGTGA
Found at i:32097628 original size:42 final size:43
Alignment explanation
Indices: 32097528--32097680 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 43
32097518 AATGCCAACA
* *
32097528 TCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGAAATCAAACATCGATGCCACTG
* * * *
32097571 TCCCAGACAGGGTCTTACATGAAATCAGATAT-GATGTCGA-TG
1 TCCCAGACATGGTCTTACATGAAATCAAACATCGATG-CCACTG
* * * *
32097613 TCCTAGACATGGTCTTACACAT-AAAACAGAA-GTCGATGCCAAC-A
1 TCCCAGACATGGTCTT--ACATGAAATCA-AACATCGATGCC-ACTG
*
32097657 TCCCAGACATGGTCTTACACGAAA
1 TCCCAGACATGGTCTTACATGAAA
32097681 ACACATATCG
Statistics
Matches: 87, Mismatches: 15, Indels: 16
0.74 0.13 0.14
Matches are distributed among these distances:
42 23 0.26
43 39 0.45
44 25 0.29
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGAAATCAAACATCGATGCCACTG
Found at i:32100953 original size:93 final size:93
Alignment explanation
Indices: 32100794--32100965 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32100784 GGATGGTTGA
* *
32100794 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
32100859 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAATCCGAGTTCGTGAAATGTAACTAG
* *
32100887 GCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
32100952 TGAATCCGAGTTCG
66 TGAATCCGAGTTCG
32100966 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAATCCGAGTTCGTGAAATGTAACTAG
Found at i:32100972 original size:46 final size:46
Alignment explanation
Indices: 32100800--32100964 Score: 163
Period size: 46 Copynumber: 3.6 Consensus size: 46
32100790 TTGAGCATCT
* *
32100800 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCC
**** * * * * *
32100846 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTA-AC-TAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACCTATGGATGCGAACGC--CC
*
32100893 GAACTCGTTGAGTTGAGTCTGAGTTCACCTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCC
* *
32100939 GAGCTCGTTGAGTTGAATCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
32100965 GCTTATGGGC
Statistics
Matches: 91, Mismatches: 23, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
45 2 0.02
46 55 0.60
47 31 0.34
48 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCC
Found at i:32102601 original size:2 final size:2
Alignment explanation
Indices: 32102594--32102626 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
32102584 ATTTGAATTT
32102594 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32102627 TTAGAACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32102660 original size:11 final size:10
Alignment explanation
Indices: 32102640--32102673 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
32102630 GAACTTTTAA
32102640 AATAATTTTT
1 AATAATTTTT
32102650 AATAATCTTTT
1 AATAAT-TTTT
*
32102661 TATAATTTTT
1 AATAATTTTT
32102671 AAT
1 AAT
32102674 TTTTTTCCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (10 bp):
AATAATTTTT
Found at i:32108280 original size:55 final size:55
Alignment explanation
Indices: 32108215--32108325 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
32108205 ATAAAATACC
32108215 TTATAATTGTCACACATTTATCACCACAAATGTCGCTGAAATTCTGCCAAATATT
1 TTATAATTGTCACACATTTATCACCACAAATGTCGCTGAAATTCTGCCAAATATT
*
32108270 TTATAGTTGTCACACATTTATCACCACAAATGTCGCTGAAATTCTGCCAAATATT
1 TTATAATTGTCACACATTTATCACCACAAATGTCGCTGAAATTCTGCCAAATATT
32108325 T
1 T
32108326 GTTTAGCTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (55 bp):
TTATAATTGTCACACATTTATCACCACAAATGTCGCTGAAATTCTGCCAAATATT
Found at i:32109088 original size:2 final size:2
Alignment explanation
Indices: 32109081--32109109 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
32109071 ACATCAAATC
32109081 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32109110 TAAATCTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32110178 original size:21 final size:19
Alignment explanation
Indices: 32110145--32110183 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
32110135 GCAGGTGACA
*
32110145 TGATTTTCCTTTTTCTTTC
1 TGATTTTCCTTTTCCTTTC
32110164 TGATTTTACCCTTTTCCTTT
1 TGATTTT--CCTTTTCCTTT
32110184 TCCGTTATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
21 10 0.59
ACGTcount: A:0.08, C:0.23, G:0.05, T:0.64
Consensus pattern (19 bp):
TGATTTTCCTTTTCCTTTC
Found at i:32110423 original size:23 final size:23
Alignment explanation
Indices: 32110393--32110443 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
32110383 AATAAACTTC
* *
32110393 AAAA-TAATAATAGAAATGATCT
1 AAAAGTAATAATAGAAATAACCT
32110415 AAAAGTAATAATAGAAATAACCT
1 AAAAGTAATAATAGAAATAACCT
32110438 AAAAGT
1 AAAAGT
32110444 TATAGTGTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.61, C:0.06, G:0.10, T:0.24
Consensus pattern (23 bp):
AAAAGTAATAATAGAAATAACCT
Found at i:32112298 original size:60 final size:59
Alignment explanation
Indices: 32112161--32112309 Score: 169
Period size: 60 Copynumber: 2.5 Consensus size: 59
32112151 CTATTCAGAA
* *
32112161 ATCAGAGT-TAACTGGGCCTCAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGTAT-ACTGGGCCT-AGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
* *
32112221 TATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA-
1 -ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAG
* *
32112281 AGTC-GAGATATATTGGGCCTTGCCCATAT
1 A-TCAGAG-TATACTGGGCCTAGCCCATAT
32112310 TAACATAGTT
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
59 4 0.05
60 51 0.65
61 22 0.28
62 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
Found at i:32114490 original size:17 final size:17
Alignment explanation
Indices: 32114468--32114500 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32114458 CTAAATATAC
32114468 AAAATAATAATAATAAT
1 AAAATAATAATAATAAT
*
32114485 AAAATAATAATGATAA
1 AAAATAATAATAATAA
32114501 CATTCAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (17 bp):
AAAATAATAATAATAAT
Found at i:32119220 original size:23 final size:23
Alignment explanation
Indices: 32119193--32119240 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
32119183 AGTAGGCATG
32119193 TAAGGTCTAGTATACGAAATGTA
1 TAAGGTCTAGTATACGAAATGTA
* *
32119216 TAAGGTCTGGTATACGAAATTTA
1 TAAGGTCTAGTATACGAAATGTA
32119239 TA
1 TA
32119241 GTCAGAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (23 bp):
TAAGGTCTAGTATACGAAATGTA
Found at i:32120783 original size:17 final size:18
Alignment explanation
Indices: 32120761--32120799 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32120751 AGTTTTCAAC
*
32120761 TTTGGAAG-TTTGTTTCA
1 TTTGGAAGATTTCTTTCA
*
32120778 TTTGGAAGATTTCTTTCT
1 TTTGGAAGATTTCTTTCA
32120796 TTTG
1 TTTG
32120800 ATTTTTAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.15, C:0.08, G:0.21, T:0.56
Consensus pattern (18 bp):
TTTGGAAGATTTCTTTCA
Found at i:32125955 original size:22 final size:22
Alignment explanation
Indices: 32125930--32125976 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
32125920 ATTTAGTCAT
32125930 AATATAAATTATTAATATAATA
1 AATATAAATTATTAATATAATA
* * *
32125952 AATATAATTTATTATTTTAATA
1 AATATAAATTATTAATATAATA
32125974 AAT
1 AAT
32125977 TATTTAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AATATAAATTATTAATATAATA
Found at i:32125987 original size:20 final size:22
Alignment explanation
Indices: 32125947--32125988 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
32125937 ATTATTAATA
*
32125947 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
32125969 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
32125989 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:32127934 original size:28 final size:27
Alignment explanation
Indices: 32127871--32127940 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
32127861 ATAGTGAGTC
32127871 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
32127898 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
32127926 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32127941 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32135806 original size:28 final size:27
Alignment explanation
Indices: 32135743--32135812 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
32135733 ATAGTGAGTC
32135743 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
32135770 CGTACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
32135798 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32135813 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32143365 original size:23 final size:23
Alignment explanation
Indices: 32143333--32143376 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
32143323 ACTACCATTT
32143333 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
32143356 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
32143377 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:32143369 original size:13 final size:11
Alignment explanation
Indices: 32143337--32143379 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
32143327 CCATTTTCTA
*
32143337 AATAAAATAAT
1 AATAAAATATT
32143348 AAT-AAATATCT
1 AATAAAATAT-T
32143359 AAGTAAAATATT
1 AA-TAAAATATT
32143371 AATAAAATA
1 AATAAAATA
32143380 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:32143757 original size:3 final size:3
Alignment explanation
Indices: 32143749--32143803 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
32143739 GCCTACTTCT
32143749 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32143797 TTA TTA T
1 TTA TTA T
32143804 ACTCCTCAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:32149102 original size:19 final size:19
Alignment explanation
Indices: 32149077--32149133 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
32149067 CAAAAATAAA
32149077 AAAAATTCAAAATAATTT-T
1 AAAAATTCAAAAT-ATTTAT
*
32149096 TAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
32149115 AAAAATTCCAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
32149133 A
1 A
32149134 TTTTATAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.32
19 23 0.68
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:32149158 original size:25 final size:25
Alignment explanation
Indices: 32149110--32149160 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
32149100 ATTCAAAATA
*
32149110 TTTATAAAAATTCCAAAATTTATAT
1 TTTATAAAAATTCCAAAATATATAT
*
32149135 TTTATAAAAAATTCTAAAAATATATA
1 TTTAT-AAAAATTC-CAAAATATATA
32149161 AAGAAAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 8 0.36
27 9 0.41
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (25 bp):
TTTATAAAAATTCCAAAATATATAT
Found at i:32149402 original size:36 final size:36
Alignment explanation
Indices: 32149362--32149439 Score: 113
Period size: 36 Copynumber: 2.2 Consensus size: 36
32149352 ATTTCACTCA
32149362 ATTCGATTCGA-TTCGACTCGACTTGAATTTAATTTC
1 ATTCGATTCGATTTC-ACTCGACTTGAATTTAATTTC
* * *
32149398 ATTCGATTCGATTTCACTTGATTTGAATTTCATTTC
1 ATTCGATTCGATTTCACTCGACTTGAATTTAATTTC
32149434 ATTCGA
1 ATTCGA
32149440 CTCAATTTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 35 0.92
37 3 0.08
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.45
Consensus pattern (36 bp):
ATTCGATTCGATTTCACTCGACTTGAATTTAATTTC
Found at i:32149405 original size:31 final size:30
Alignment explanation
Indices: 32149367--32149443 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 30
32149357 ACTCAATTCG
32149367 ATTCGATTCGACTCGACTTGAATTT-AATTTC
1 ATTCGATTCGACTC-ACTTG-ATTTGAATTTC
*
32149398 ATTCGATTCGATTTCACTTGATTTGAATTTC
1 ATTCGATTCGA-CTCACTTGATTTGAATTTC
32149429 ATTTC-ATTCGACTCA
1 A-TTCGATTCGACTCA
32149444 ATTTGAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
30 7 0.17
31 29 0.71
32 5 0.12
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (30 bp):
ATTCGATTCGACTCACTTGATTTGAATTTC
Found at i:32149762 original size:18 final size:19
Alignment explanation
Indices: 32149725--32149769 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
32149715 ATTATGAAAG
*
32149725 TATTTTTTTTTGTATAATT
1 TATTTTTATTTGTATAATT
*
32149744 TATTTTTATTT-TATGATT
1 TATTTTTATTTGTATAATT
*
32149762 TATATTTA
1 TATTTTTA
32149770 GAGTTTGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (19 bp):
TATTTTTATTTGTATAATT
Found at i:32150291 original size:20 final size:21
Alignment explanation
Indices: 32150266--32150309 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
32150256 AAAAAATTAA
32150266 TTAAAT-TTATTTTAAAATAT
1 TTAAATATTATTTTAAAATAT
*
32150286 TTAAATATTATTTTAAAATTT
1 TTAAATATTATTTTAAAATAT
32150307 TTA
1 TTA
32150310 TTACTCTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TTAAATATTATTTTAAAATAT
Found at i:32155498 original size:5 final size:5
Alignment explanation
Indices: 32155490--32155520 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
32155480 ACAAAAGATA
32155490 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
32155521 CCAAGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:32157724 original size:28 final size:28
Alignment explanation
Indices: 32157684--32157740 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
32157674 GGTTCAAATC
32157684 AATCAACATAACCATAATGATTTTTCAG
1 AATCAACATAACCATAATGATTTTTCAG
32157712 AATCAACATAACCATAATGATTTTTCAG
1 AATCAACATAACCATAATGATTTTTCAG
32157740 A
1 A
32157741 CCTAAATTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.32
Consensus pattern (28 bp):
AATCAACATAACCATAATGATTTTTCAG
Found at i:32171966 original size:44 final size:45
Alignment explanation
Indices: 32171896--32171981 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
32171886 TTTCTATAGC
*
32171896 TGTTGATTGGAAACCACTGAGAAATGTATC-CGAAGTTAGAAGCT
1 TGTTGATTGGAAACCACCGAGAAATGTATCGCGAAGTTAGAAGCT
* *
32171940 TGTTGATTGGAAACCACCGAGTAATGTATCGTGAAGTTAGAA
1 TGTTGATTGGAAACCACCGAGAAATGTATCGCGAAGTTAGAA
32171982 TTGCACCTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 28 0.74
45 10 0.26
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.28
Consensus pattern (45 bp):
TGTTGATTGGAAACCACCGAGAAATGTATCGCGAAGTTAGAAGCT
Found at i:32175159 original size:2 final size:2
Alignment explanation
Indices: 32175152--32175181 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
32175142 CCTTGAAATT
32175152 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
32175182 CTAGGGTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:32182328 original size:57 final size:59
Alignment explanation
Indices: 32182238--32182378 Score: 157
Period size: 57 Copynumber: 2.4 Consensus size: 59
32182228 ATCGTATTAC
* ** * *
32182238 AGGATTACCAGTTCAGGCTAAAT-ATTTTATGTAACGTATGCTC-AGAAGAGCTTA-ATT
1 AGGATTACCAGTTCAGGCTAAATCCTAATATGTAACATATGCTCGAGAA-AGATTATATT
*
32182295 AGGATTACCAGTCCAGGCTAAATCCTAAT-TGTAACATATGCTCGAGAAAGATTATATT
1 AGGATTACCAGTTCAGGCTAAATCCTAATATGTAACATATGCTCGAGAAAGATTATATT
* *
32182353 AGAATTACCCGTTC-GGACTAAATCCT
1 AGGATTACCAGTTCAGG-CTAAATCCT
32182379 TTCTATAAAG
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
57 42 0.59
58 29 0.41
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (59 bp):
AGGATTACCAGTTCAGGCTAAATCCTAATATGTAACATATGCTCGAGAAAGATTATATT
Found at i:32183743 original size:16 final size:16
Alignment explanation
Indices: 32183722--32183754 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
32183712 GATTAAACCT
32183722 TGATACAAGAAAGTTG
1 TGATACAAGAAAGTTG
32183738 TGATACAAGAAAGTTG
1 TGATACAAGAAAGTTG
32183754 T
1 T
32183755 ATATATAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.24, T:0.27
Consensus pattern (16 bp):
TGATACAAGAAAGTTG
Found at i:32185559 original size:5 final size:5
Alignment explanation
Indices: 32185551--32185584 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
32185541 TATTAAAGAC
*
32185551 ATTAC ATTAA ATTAA ATTAA ATTAA ATTAA ATTA
1 ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA ATTA
32185585 TATATGTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:32186332 original size:18 final size:18
Alignment explanation
Indices: 32186311--32186370 Score: 77
Period size: 18 Copynumber: 3.3 Consensus size: 18
32186301 TTAATTTTTT
32186311 AAATTTTAAAAATTTAAA
1 AAATTTTAAAAATTTAAA
*
32186329 AAATTTAAAAAATTT-AA
1 AAATTTTAAAAATTTAAA
*
32186346 AAATTATTAAAAATGTATAA
1 AAATT-TTAAAAATTTA-AA
32186366 AAATT
1 AAATT
32186371 AAAAAGAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 7 0.19
18 22 0.61
20 7 0.19
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
AAATTTTAAAAATTTAAA
Found at i:32186355 original size:10 final size:9
Alignment explanation
Indices: 32186311--32186370 Score: 68
Period size: 9 Copynumber: 6.6 Consensus size: 9
32186301 TTAATTTTTT
32186311 AAATTTTAA
1 AAATTTTAA
32186320 AAA-TTTAA
1 AAATTTTAA
*
32186328 AAAATTTAA
1 AAATTTTAA
*
32186337 AAAATTTAA
1 AAATTTTAA
32186346 AAATTATTAA
1 AAATT-TTAA
*
32186356 AAATGTATAA
1 AAAT-TTTAA
32186366 AAATT
1 AAATT
32186371 AAAAAGAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
8 8 0.17
9 22 0.48
10 15 0.33
11 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (9 bp):
AAATTTTAA
Found at i:32186375 original size:18 final size:17
Alignment explanation
Indices: 32186316--32186375 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
32186306 TTTTTAAATT
*
32186316 TTAAAAATTTA-AAAAA
1 TTAAAAAATTATAAAAA
32186332 TTTAAAAAATT-TAAAAA
1 -TTAAAAAATTATAAAAA
32186349 TTATTAAAAATGTATAAAAA
1 TTA--AAAAAT-TATAAAAA
32186369 TTAAAAA
1 TTAAAAA
32186376 GAATATTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
16 3 0.08
17 14 0.38
18 10 0.27
19 1 0.03
20 9 0.24
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
TTAAAAAATTATAAAAA
Found at i:32187447 original size:19 final size:19
Alignment explanation
Indices: 32187419--32187466 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
32187409 TTCAATTTTT
32187419 AAAA-AAAATATTTTTCAA
1 AAAATAAAATATTTTTCAA
*
32187437 AAAATAAAATATTTTTTAA
1 AAAATAAAATATTTTTCAA
*
32187456 ATAATTAAAAT
1 A-AAATAAAAT
32187467 GTGCACAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 4 0.15
19 14 0.54
20 8 0.31
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATAAAATATTTTTCAA
Found at i:32187452 original size:20 final size:18
Alignment explanation
Indices: 32187419--32187466 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
32187409 TTCAATTTTT
32187419 AAAA-AAAATATTTTTCAA
1 AAAATAAAATATTTTT-AA
32187437 AAAATAAAATATTTTTTAA
1 AAAATAAAATA-TTTTTAA
*
32187456 ATAATTAAAAT
1 A-AAATAAAAT
32187467 GTGCACAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 4 0.15
19 9 0.35
20 13 0.50
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATAAAATATTTTTAA
Found at i:32187561 original size:21 final size:21
Alignment explanation
Indices: 32187536--32187579 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
32187526 TTAAAGACTC
* *
32187536 AAAAATTATAAAAAATATTTA
1 AAAAACTATAAAAAATATATA
*
32187557 AAAAACTCTAAAAAATATATA
1 AAAAACTATAAAAAATATATA
32187578 AA
1 AA
32187580 GATTTAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (21 bp):
AAAAACTATAAAAAATATATA
Found at i:32187911 original size:39 final size:39
Alignment explanation
Indices: 32187855--32187933 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
32187845 ATCTTAAGAA
32187855 ACCAAAAAAATAATTTGCCTTTTTTCACCAACTAACTCT
1 ACCAAAAAAATAATTTGCCTTTTTTCACCAACTAACTCT
* * * *
32187894 ACCAAAAATATAGTTTGCCTTTTTTCACTAACTAGCTCT
1 ACCAAAAAAATAATTTGCCTTTTTTCACCAACTAACTCT
32187933 A
1 A
32187934 GCAGAATTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (39 bp):
ACCAAAAAAATAATTTGCCTTTTTTCACCAACTAACTCT
Found at i:32189190 original size:17 final size:17
Alignment explanation
Indices: 32189172--32189217 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
32189162 TAAATTAATA
32189172 AAATAAA-AATAAAAAT
1 AAATAAATAATAAAAAT
*
32189188 AAATAAATAATAAAACT
1 AAATAAATAATAAAAAT
*
32189205 AACTAAAATAATA
1 AAAT-AAATAATA
32189218 TCTTCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 7 0.27
17 11 0.42
18 8 0.31
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (17 bp):
AAATAAATAATAAAAAT
Found at i:32199626 original size:17 final size:17
Alignment explanation
Indices: 32199608--32199653 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
32199598 TAAATTAATA
32199608 AAATAAA-AATAAAAAT
1 AAATAAATAATAAAAAT
*
32199624 AAATAAATAATAAAACT
1 AAATAAATAATAAAAAT
*
32199641 AACTAAAATAATA
1 AAAT-AAATAATA
32199654 TCTTCTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 7 0.27
17 11 0.42
18 8 0.31
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (17 bp):
AAATAAATAATAAAAAT
Done.