Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 109 of 433
Found at i:33509226 original size:27 final size:27
Alignment explanation
Indices: 33509155--33509405 Score: 222
Period size: 27 Copynumber: 9.3 Consensus size: 27
33509145 AGGGTAAAAC
****
33509155 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
33509182 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
33509209 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** * *
33509236 AATAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
33509263 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
33509290 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * *
33509317 GATAATTTTTCAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * *
33509344 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
33509371 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
33509397 GGTAATTTT
1 GGTAATTTT
33509406 GTAAACCAAA
Statistics
Matches: 191, Mismatches: 30, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
26 19 0.10
27 170 0.89
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:33509242 original size:54 final size:53
Alignment explanation
Indices: 33508832--33509277 Score: 185
Period size: 54 Copynumber: 8.3 Consensus size: 53
33508822 GGGTAAAACA
** * * **
33508832 GTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTACAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGT-ATTTG
* ** * ** * ***
33508886 GTAATTCTGTAAATCGAGGGTGAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTACAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGT-ATTTG
* * ** * *** * **
33508940 ATAATTATGTAAATCGGGGGTAAAATGGTAATTCTGTAAATCGAGGGTGAAATG
1 GTAATTTTACAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGT-ATTTG
* ** * * * * ****
33508994 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAACA
1 GTAATTTTACAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGT-ATTTG
* ** ** ** ** *
33509048 GTAATTATGTAAATTAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTTTACAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGT-ATTTG
* * ** * ***
33509102 GTAATTCTGTA-AACT-AAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATT-T-TACAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGT-ATTTG
**
33509156 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTA-TTTG
* *** * * * *
33509210 GTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTATTT-G
*
33509264 GTAATTTCACAAAT
1 GTAATTTTACAAAT
33509278 TAGGGGTATT
Statistics
Matches: 331, Mismatches: 55, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
52 2 0.01
53 8 0.02
54 317 0.96
55 3 0.01
56 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (53 bp):
GTAATTTTACAAATCGAGGGTAAAACAATAATTCTATAAATCGAGGGTATTTG
Found at i:33509419 original size:26 final size:26
Alignment explanation
Indices: 33509282--33509422 Score: 131
Period size: 27 Copynumber: 5.3 Consensus size: 26
33509272 ACAAATTAGG
* * *
33509282 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTATAAACCA-A
* * *
33509309 GGTATTTTGATAATTTT-TCAAACTAGG
1 GGTATTTTGGTAATTTTAT-AAACCA-A
33509336 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
33509362 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTATAAACCAA
*
33509389 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
*
33509415 AGTATTTT
1 GGTATTTT
33509423 AAATAGGGAT
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
26 28 0.29
27 67 0.70
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:33510926 original size:27 final size:27
Alignment explanation
Indices: 33510896--33510952 Score: 51
Period size: 27 Copynumber: 2.1 Consensus size: 27
33510886 ATTTGTAAAC
* *
33510896 TTACCAAAGTACCCTCGATTTATAGAA
1 TTACCAAAATACCCTCGATTTACAGAA
**** *
33510923 TTACCGTTTTACCCTTGATTTACAGAA
1 TTACCAAAATACCCTCGATTTACAGAA
33510950 TTA
1 TTA
33510953 TCGTTTTACC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (27 bp):
TTACCAAAATACCCTCGATTTACAGAA
Found at i:33510957 original size:27 final size:27
Alignment explanation
Indices: 33510905--33511061 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
33510895 CTTACCAAAG
*
33510905 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
33510932 TACCCTTGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ** * *
33510959 TACCTTTAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
33510986 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
33511013 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
33511040 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
33511062 TAAAATACCC
Statistics
Matches: 114, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:33511052 original size:81 final size:81
Alignment explanation
Indices: 33510905--33511061 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
33510895 CTTACCAAAG
* * * * *
33510905 TACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTATCGTTTTACCTTTAATT
1 TACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
* *
33510970 TATAGAATTACCATTT
66 TACAAAATTACCATTT
* *
33510986 TACCCTCAATTTATAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
33511051 TACAAAATTAC
66 TACAAAATTAC
33511062 TAAAATACCC
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATT
TACAAAATTACCATTT
Found at i:33511070 original size:27 final size:27
Alignment explanation
Indices: 33511013--33511207 Score: 171
Period size: 27 Copynumber: 7.2 Consensus size: 27
33511003 ATTATCGTTT
* ****
33511013 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
33511040 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
33511067 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
33511094 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* * *
33511121 TACCACT-GGTTTGA-GAAATTACCGAAA
1 TACC-CTCGATTT-ACAAAATTACCAAAA
* **
33511148 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
33511175 TACCCTTGATTTACAAAATTACAAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
33511202 TACCCT
1 TACCCT
33511208 TGACTTTTTT
Statistics
Matches: 133, Mismatches: 29, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
26 2 0.02
27 130 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:33511071 original size:81 final size:81
Alignment explanation
Indices: 33510881--33511072 Score: 231
Period size: 81 Copynumber: 2.4 Consensus size: 81
33510871 ACTAAAATGT
** * * * *
33510881 CCTCAATTTGTAAACTTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTAC
1 CCTCAATTTACAAAATTACCAAAATACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTAC
*
33510946 AGAATTATCGTTTTAC
66 AGAATTACCGTTTTAC
* * * * *** *
33510962 CTTTAATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTATCGTTTTACCCTCGATTTAC
1 CCTCAATTTACAAAATTACCAAAATACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTAC
33511027 AGAATTACCGTTTTAC
66 AGAATTACCGTTTTAC
* *
33511043 CCTCGATTTACAAAATTACTAAAATACCCT
1 CCTCAATTTACAAAATTACCAAAATACCCT
33511073 TGGTTTACAA
Statistics
Matches: 90, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
CCTCAATTTACAAAATTACCAAAATACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTAC
AGAATTACCGTTTTAC
Found at i:33511080 original size:54 final size:54
Alignment explanation
Indices: 33511013--33511293 Score: 201
Period size: 54 Copynumber: 5.1 Consensus size: 54
33511003 ATTATCGTTT
* * *** * ** *
33511013 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
* * *
33511067 TACCCTTGGTTTACAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAA
* *
33511121 TACCAC-TGGTTTGA-GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTTGATTT-ACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
** * * * * *
33511175 TACCCTTGATTTACAAAATTACAAAAATACCCTTGACTTTTTTAAAAATTA-TAGGAA
1 TACCCTTGATTTACAAAATTACCGAAATACCC-TCA-ATTTGT-AAAATTACCA-AAA
* * * *** * *
33511232 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
*
33511286 CACCCTTG
1 TACCCTTG
33511294 TAGGATGAAA
Statistics
Matches: 178, Mismatches: 38, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
53 3 0.02
54 122 0.69
55 10 0.06
56 6 0.03
57 37 0.21
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
Found at i:33511260 original size:27 final size:27
Alignment explanation
Indices: 33511230--33511293 Score: 56
Period size: 27 Copynumber: 2.4 Consensus size: 27
33511220 AAATTATAGG
* **
33511230 AATACCATTGGTTTACAAAATTACTGA
1 AATACCCTTGGTTTACAAAATTACCAA
** * *
33511257 AATACCCTTGGTTTGTAGATTTACCAA
1 AATACCCTTGGTTTACAAAATTACCAA
*
33511284 AACACCCTTG
1 AATACCCTTG
33511294 TAGGATGAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (27 bp):
AATACCCTTGGTTTACAAAATTACCAA
Found at i:33511390 original size:27 final size:27
Alignment explanation
Indices: 33511315--33511378 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
33511305 GACTAAAATA
* *
33511315 GGTAAAAAGACCGTAA-AGCCTTGTAG
1 GGTAAAATGACCGTAATACCCTTGTAG
* *
33511341 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAATGACCGTAATACCCTTGTAG
33511368 GGTAAAATGAC
1 GGTAAAATGAC
33511379 GAATACGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 14 0.44
27 18 0.56
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCTTGTAG
Found at i:33512259 original size:24 final size:25
Alignment explanation
Indices: 33512189--33512257 Score: 95
Period size: 24 Copynumber: 2.8 Consensus size: 25
33512179 AGGAAGTGCT
* * * *
33512189 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
33512214 AAAA-GGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
33512238 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
33512258 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 20 0.51
25 19 0.49
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:33512264 original size:24 final size:24
Alignment explanation
Indices: 33512189--33512270 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
33512179 AGGAAGTGCT
* * * *
33512189 AAAAGGGCTATGCCCTAGTTTACC
1 AAAAAGGCTTTGCCCCAGTTTATC
*
33512213 GAAAAGGCTTTGCCCCAGTTTATC
1 AAAAAGGCTTTGCCCCAGTTTATC
*
33512237 AAAAAGGGCTTTGCCCCAG-TTATT
1 AAAAA-GGCTTTGCCCCAGTTTATC
33512261 AAAAGAGGCT
1 AAAA-AGGCT
33512271 AGGCCTCCAG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
24 35 0.71
25 14 0.29
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTATC
Found at i:33512529 original size:31 final size:31
Alignment explanation
Indices: 33512477--33512548 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
33512467 CGCTTACAGT
*
33512477 AAAGGCTTC-GACCAGTGATATGATTTATGA
1 AAAGGCTTCGGACCAGTAATATGATTTATGA
*
33512507 AAAGGCTTCGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGACCAGTAATATGATTTATGA
33512538 AAAGGCTTCGG
1 AAAGGCTTCGG
33512549 TCCAATATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 9 0.23
31 30 0.77
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGACCAGTAATATGATTTATGA
Found at i:33514102 original size:12 final size:12
Alignment explanation
Indices: 33514085--33514128 Score: 88
Period size: 12 Copynumber: 3.7 Consensus size: 12
33514075 TGAGACACAT
33514085 GACCGTGTGTCG
1 GACCGTGTGTCG
33514097 GACCGTGTGTCG
1 GACCGTGTGTCG
33514109 GACCGTGTGTCG
1 GACCGTGTGTCG
33514121 GACCGTGT
1 GACCGTGT
33514129 AGTCAACACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.09, C:0.25, G:0.41, T:0.25
Consensus pattern (12 bp):
GACCGTGTGTCG
Found at i:33517171 original size:27 final size:28
Alignment explanation
Indices: 33517115--33517184 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
33517105 AAATTTGTAC
33517115 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
33517143 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
33517170 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
33517185 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:33517195 original size:27 final size:27
Alignment explanation
Indices: 33517115--33517196 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
33517105 AAATTTGTAC
* *
33517115 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
33517143 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
33517170 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
33517197 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:33525759 original size:15 final size:15
Alignment explanation
Indices: 33525724--33525768 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
33525714 CAAACATAAC
*
33525724 AAGAAAACCAAG-TA
1 AAGAAATCCAAGATA
33525738 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
*
33525753 GAGAAATCCCAAGATA
1 AAGAAAT-CCAAGATA
33525769 CTATACTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 11 0.41
15 8 0.30
16 8 0.30
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:33529632 original size:72 final size:72
Alignment explanation
Indices: 33529516--33529761 Score: 221
Period size: 72 Copynumber: 3.4 Consensus size: 72
33529506 ACTGCATATT
* * * * **
33529516 ATGTAATGCCCG--CATTTGAGCTACTCACGGGTCTGTACCCAAAGTCAGCACCCGGACCTGAAA
1 ATGTAATGCCCGCTCA-TTGAGCTACTCACGGGTTTATACACAAAGTCAGCACCCGAACCCCAAA
* *
33529579 GCATTATC
65 ACATTAAC
** * *
33529587 ATGTAATGCCCGCTCATTGAGCTACTCACATGTTTATACACAAAGTCAGTACCTGAACCCCAAAA
1 ATGTAATGCCCGCTCATTGAGCTACTCACGGGTTTATACACAAAGTCAGCACCCGAACCCCAAAA
*
33529652 TATTAAC
66 CATTAAC
* ** * * *
33529659 ATG-ATATGCTCGCTCAGCGAGTTACTCACCGGGTTTATACACAAAGTCAGCACTCAAACCCCAA
1 ATGTA-ATGCCCGCTCATTGAGCTACTCA-CGGGTTTATACACAAAGTCAGCACCCGAACCCCAA
33529723 AACATTAAC
64 AACATTAAC
* ** *
33529732 ATG-ATATGCTCGCTCAGCGAGTTACTCACG
1 ATGTA-ATGCCCGCTCATTGAGCTACTCACG
33529762 AGCCTGATCA
Statistics
Matches: 147, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
71 13 0.09
72 67 0.46
73 67 0.46
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (72 bp):
ATGTAATGCCCGCTCATTGAGCTACTCACGGGTTTATACACAAAGTCAGCACCCGAACCCCAAAA
CATTAAC
Found at i:33529719 original size:73 final size:73
Alignment explanation
Indices: 33529618--33529760 Score: 243
Period size: 73 Copynumber: 2.0 Consensus size: 73
33529608 CTACTCACAT
* * *
33529618 GTTTATACACAAAGTCAGTACCTGAACCCCAAAATATTAACATGATATGCTCGCTCAGCGAGTTA
1 GTTTATACACAAAGTCAGCACCTAAACCCCAAAACATTAACATGATATGCTCGCTCAGCGAGTTA
33529683 CTCACCGG
66 CTCACCGG
33529691 GTTTATACACAAAGTCAGCA-CTCAAACCCCAAAACATTAACATGATATGCTCGCTCAGCGAGTT
1 GTTTATACACAAAGTCAGCACCT-AAACCCCAAAACATTAACATGATATGCTCGCTCAGCGAGTT
33529755 ACTCAC
65 ACTCAC
33529761 GAGCCTGATC
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
72 2 0.03
73 64 0.97
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (73 bp):
GTTTATACACAAAGTCAGCACCTAAACCCCAAAACATTAACATGATATGCTCGCTCAGCGAGTTA
CTCACCGG
Found at i:33533084 original size:37 final size:37
Alignment explanation
Indices: 33533043--33533138 Score: 97
Period size: 37 Copynumber: 2.6 Consensus size: 37
33533033 TCTTCAGAGT
*
33533043 ATTTGGCATGTTATCGGTTGGATTAGCTCT-TTGAAGC
1 ATTTGGCATGTTATCGGTTGGATTAGCTCTCATG-AGC
** *
33533080 ATTTGAAATGCTATCGGTTCGG-TTAGCTCTCATGAGC
1 ATTTGGCATGTTATCGGTT-GGATTAGCTCTCATGAGC
* * *
33533117 ATTTGGCGTGTTTTCTGTTGGA
1 ATTTGGCATGTTATCGGTTGGA
33533139 CTACTGTGCT
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
36 2 0.04
37 40 0.87
38 4 0.09
ACGTcount: A:0.18, C:0.15, G:0.27, T:0.41
Consensus pattern (37 bp):
ATTTGGCATGTTATCGGTTGGATTAGCTCTCATGAGC
Found at i:33534194 original size:50 final size:50
Alignment explanation
Indices: 33534113--33534299 Score: 180
Period size: 50 Copynumber: 3.7 Consensus size: 50
33534103 CCAAACCAAG
* * * *
33534113 CCTTTGTGGCGAATTGTCTAGG-AAGCCTTTGTGGTAAGTCATCTGTCAAA-
1 CCTTTGTGGCAAATTGT-TTGGAAAGCTTTTGTGGTGAGTCATCTGT-AAAT
* * *
33534163 CCTTTTTGGCAAATTGTTTGTAAAGCTTTTGTGGTGAGTCATTTGTAAAT
1 CCTTTGTGGCAAATTGTTTGGAAAGCTTTTGTGGTGAGTCATCTGTAAAT
* * * * **
33534213 CCTTTGTGGCGAATTGTTTGGGAAGCTTTTGTTGTGAGTAATCTGTAAGG
1 CCTTTGTGGCAAATTGTTTGGAAAGCTTTTGTGGTGAGTCATCTGTAAAT
* * * * *
33534263 CCTTTGGGGCGAATTTTTTGGGAAGCCTTTGTGGTGA
1 CCTTTGTGGCAAATTGTTTGGAAAGCTTTTGTGGTGA
33534300 ATTGTTTGGT
Statistics
Matches: 115, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 5 0.04
50 110 0.96
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (50 bp):
CCTTTGTGGCAAATTGTTTGGAAAGCTTTTGTGGTGAGTCATCTGTAAAT
Found at i:33534208 original size:25 final size:25
Alignment explanation
Indices: 33534135--33534363 Score: 102
Period size: 25 Copynumber: 9.2 Consensus size: 25
33534125 ATTGTCTAGG
** *
33534135 AAGCCTTTGTGGTAAGTCATCTGTCA
1 AAGCCTTTGTGGCGAGTCATTTGT-A
* * * **
33534161 AA-CCTTTTTGGCAAATTGTTTGTA
1 AAGCCTTTGTGGCGAGTCATTTGTA
* *
33534185 AAGCTTTTGTGGTGAGTCATTTGTA
1 AAGCCTTTGTGGCGAGTCATTTGTA
* * ** **
33534210 AATCCTTTGTGGCGAATTGTTTGGG
1 AAGCCTTTGTGGCGAGTCATTTGTA
* * * * *
33534235 AAGCTTTTGTTGTGAGTAATCTGTA
1 AAGCCTTTGTGGCGAGTCATTTGTA
* * * ** **
33534260 AGGCCTTTGGGGCGAATTTTTTGGG
1 AAGCCTTTGTGGCGAGTCATTTGTA
* * **
33534285 AAGCCTTTGTGGTGAATTGTTTGGT-
1 AAGCCTTTGTGGCGAGTCATTT-GTA
* * *
33534310 AAGCCTTTGTGCCGAGTCATCTATA
1 AAGCCTTTGTGGCGAGTCATTTGTA
*
33534335 AAGCCTTTGTGGCGAGTCATCTGTA
1 AAGCCTTTGTGGCGAGTCATTTGTA
33534360 AAGC
1 AAGC
33534364 TTTTATGATG
Statistics
Matches: 144, Mismatches: 56, Indels: 7
0.70 0.27 0.03
Matches are distributed among these distances:
24 4 0.03
25 137 0.95
26 3 0.02
ACGTcount: A:0.21, C:0.14, G:0.27, T:0.38
Consensus pattern (25 bp):
AAGCCTTTGTGGCGAGTCATTTGTA
Found at i:33534260 original size:75 final size:75
Alignment explanation
Indices: 33534181--33534401 Score: 219
Period size: 75 Copynumber: 2.9 Consensus size: 75
33534171 GCAAATTGTT
* * * * *
33534181 TGTAAAGCTTTTGTGGTGAGTCATTTGTAAATCCTTTGTGGCGAATTGTTTGGGAAGCTTTTGTT
1 TGTAAAGCCTTTGTGGCGAGTCATTTGTAAAGCCTTTGTGGTGAATTGTTTGGGAAGCCTTTG-T
*
33534246 G-TGAGTAATC
65 GCCGAGTAATC
* * * ** ** *
33534256 TGTAAGGCCTTTGGGGCGAATTTTTTGGGAAGCCTTTGTGGTGAATTGTTTGGTAAGCCTTTGTG
1 TGTAAAGCCTTTGTGGCGAGTCATTTGTAAAGCCTTTGTGGTGAATTGTTTGGGAAGCCTTTGTG
*
33534321 CCGAGTCATC
66 CCGAGTAATC
* * * * * * *
33534331 TATAAAGCCTTTGTGGCGAGTCATCTGTAAAGCTTTTATGATGAATTATTTGGGAAGCCCTTGTG
1 TGTAAAGCCTTTGTGGCGAGTCATTTGTAAAGCCTTTGTGGTGAATTGTTTGGGAAGCCTTTGTG
*
33534396 ACGAGT
66 CCGAGT
33534402 CATGTAGGAA
Statistics
Matches: 114, Mismatches: 31, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
74 2 0.02
75 112 0.98
ACGTcount: A:0.20, C:0.13, G:0.29, T:0.38
Consensus pattern (75 bp):
TGTAAAGCCTTTGTGGCGAGTCATTTGTAAAGCCTTTGTGGTGAATTGTTTGGGAAGCCTTTGTG
CCGAGTAATC
Found at i:33534294 original size:100 final size:100
Alignment explanation
Indices: 33534113--33534299 Score: 232
Period size: 100 Copynumber: 1.9 Consensus size: 100
33534103 CCAAACCAAG
* **
33534113 CCTTTGTGGCGAATTGTCTAGGAAGCCTTTGTGGTAAGTCATCTGTCAAACCTTTTTGGCAAATT
1 CCTTTGTGGCGAATTGTCTAGGAAGCCTTTGTGGTAAGTAATCTGTCAAACCTTTGGGGCAAATT
* *
33534178 GTTTGTAAAGCTTTTGTGGTGAGTCATTTGTAAAT
66 GTTTGGAAAGCCTTTGTGGTGAGTCATTTGTAAAT
* * * * * * *
33534213 CCTTTGTGGCGAATTGTTTGGGAAGCTTTTGTTGTGAGTAATCTGT-AAGGCCTTTGGGGCGAAT
1 CCTTTGTGGCGAATTGTCTAGGAAGCCTTTGTGGTAAGTAATCTGTCAA-ACCTTTGGGGCAAAT
* *
33534277 TTTTTGGGAAGCCTTTGTGGTGA
65 TGTTTGGAAAGCCTTTGTGGTGA
33534300 ATTGTTTGGT
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
99 2 0.03
100 70 0.97
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (100 bp):
CCTTTGTGGCGAATTGTCTAGGAAGCCTTTGTGGTAAGTAATCTGTCAAACCTTTGGGGCAAATT
GTTTGGAAAGCCTTTGTGGTGAGTCATTTGTAAAT
Found at i:33534317 original size:100 final size:100
Alignment explanation
Indices: 33534110--33534320 Score: 228
Period size: 100 Copynumber: 2.1 Consensus size: 100
33534100 AAACCAAACC
* **
33534110 AAGCCTTTGTGGCGAATTGTCTAGGAAGCCTTTGTGGTAAGTCATCTGTCAAACCTTTTTGGCAA
1 AAGCCTTTGTGGCGAATTGTCTAGGAAGCCTTTGTGGTAAGTAATCTGTCAAACCTTTGGGGCAA
* * *
33534175 ATTGTTTGTAAAGCTTTTGTGGTGAGTCATTTGTA
66 ATTGTTTGGAAAGCCTTTGTGGTGAATCATTTGTA
* * * * * * * *
33534210 AATCCTTTGTGGCGAATTGTTTGGGAAGCTTTTGTTGTGAGTAATCTGT-AAGGCCTTTGGGGCG
1 AAGCCTTTGTGGCGAATTGTCTAGGAAGCCTTTGTGGTAAGTAATCTGTCAA-ACCTTTGGGGCA
* * **
33534274 AATTTTTTGGGAAGCCTTTGTGGTGAATTGTTTGGT-
65 AATTGTTTGGAAAGCCTTTGTGGTGAATCATTT-GTA
33534310 AAGCCTTTGTG
1 AAGCCTTTGTG
33534321 CCGAGTCATC
Statistics
Matches: 90, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
99 2 0.02
100 86 0.96
101 2 0.02
ACGTcount: A:0.19, C:0.12, G:0.28, T:0.40
Consensus pattern (100 bp):
AAGCCTTTGTGGCGAATTGTCTAGGAAGCCTTTGTGGTAAGTAATCTGTCAAACCTTTGGGGCAA
ATTGTTTGGAAAGCCTTTGTGGTGAATCATTTGTA
Found at i:33536552 original size:46 final size:48
Alignment explanation
Indices: 33536480--33536747 Score: 168
Period size: 46 Copynumber: 5.7 Consensus size: 48
33536470 TTATTTGTGT
* * * *
33536480 GCCAATGTAAGA-CGTGTGTGGGACAT-GCATCGGCCTCGTGACGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGTGATGTAA
* *
33536526 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CTACGAGATGT--
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGTGATGTAA
* * *
33536570 GTCAGTGTAAGACCATGTCTGGGATATGGCATCGGCAC-AGAT-ATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCG-TGATGT-A-A
* * *
33536620 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCG-AAT-TCGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGTGATGT--A-A
* * * * * * * *
33536669 GTCATTGTAAGACCATGCCTAGGACGTGGCAT-TGACT--TGATGGATGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGTGAT-G-TAA
33536716 GCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCAT
33536748 TGGCATTATA
Statistics
Matches: 172, Mismatches: 33, Indels: 33
0.72 0.14 0.14
Matches are distributed among these distances:
44 11 0.06
45 15 0.09
46 46 0.27
47 30 0.17
48 5 0.03
49 31 0.18
50 34 0.20
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGTGATGTAA
Found at i:33539202 original size:40 final size:39
Alignment explanation
Indices: 33539147--33539364 Score: 217
Period size: 40 Copynumber: 5.5 Consensus size: 39
33539137 GCTCGATTGT
* * *
33539147 CTTCGGGACA-TAGCCCGGTTATAGTAATTCGTACAATTGC
1 CTTCGGGA-ATTAGCCCGGTT-TAGTAACTCGCACAAATGC
33539187 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATG-
1 CTTCGGGAATTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
33539226 CTTCGGGACTTAACCCGGTTTTGGTAACTCACACAAATGC
1 CTTCGGGAATTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * *
33539266 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * *
33539306 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
*
33539347 CTTCGGGACTTAGCCCGG
1 CTTCGGGAATTAGCCCGG
33539365 ACATCATTCG
Statistics
Matches: 155, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 35 0.23
40 92 0.59
41 27 0.17
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CTTCGGGAATTAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:33539268 original size:79 final size:80
Alignment explanation
Indices: 33539147--33539365 Score: 260
Period size: 79 Copynumber: 2.7 Consensus size: 80
33539137 GCTCGATTGT
* * * * ** * *
33539147 CTTCGGGACATAGCCCGGTTATAGTAATTCGTACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
33539212 AACTCGCACAAATG-
66 AACTCGCACAAATGC
* * * *
33539226 CTTCGGGACTTAACCCGGTTTTGGTAACTCACACAAATGCCTTCGGGACTTAACCCGGTTTTGGT
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
33539291 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* * * * * *
33539306 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCA-CACAAATGCCTTCGGGACTTAGCCCGGA
33539366 CATCATTCGA
Statistics
Matches: 117, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
79 67 0.57
80 25 0.21
81 25 0.21
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAACCCGGTTTTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
AACTCGCACAAATGC
Found at i:33546406 original size:143 final size:137
Alignment explanation
Indices: 33546059--33546421 Score: 392
Period size: 143 Copynumber: 2.6 Consensus size: 137
33546049 ATTTGTCTGC
* * * * * *
33546059 CAGTGTAAGACATGTCTGGGACATGCATCGACCACACTATGAGAACCAGTGTAAGACCATGTCTG
1 CAGTGTAAGACATGTCTGAGACATGCATCAACTATA-AATGTG-A-CAGTGTAAGACCATGTCTG
* * *
33546124 GGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG
63 GGACATGGCATCGGCATGGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCG
33546189 TGACATAAGG
128 TGACATAAGG
** *
33546199 CAGTGTAAGACATGTCTGAGACATGCATCGGCTACTAAATGTGTCAGTGTAAGACCATGTCTGGG
1 CAGTGTAAGACATGTCTGAGACATGCATCAACTA-TAAATGTGACAGTGTAAGACCATGTCTGGG
* * *
33546264 ACATGGCATCGGCATGGATATGTGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCAGCCT
65 ACATGGCATCGGCATGGAGA--CGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCT
* *
33546329 CGAAT-TCGAT-AGT
126 CG--TGAC-ATAAGG
* * *
33546342 CAGTGTAAGACCATGTCT-AGGACATGGCATCAACT-TGATTTTGACAGTGTAAGACCATGTCTG
1 CAGTGTAAGA-CATGTCTGA-GACAT-GCATCAACTATAAATGTGACAGTGTAAGACCATGTCTG
33546405 GGACATGGCATCGGCAT
63 GGACATGGCATCGGCAT
33546422 TATACCCTAT
Statistics
Matches: 191, Mismatches: 21, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
138 38 0.20
140 51 0.27
141 14 0.07
142 11 0.06
143 55 0.29
144 15 0.08
145 7 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (137 bp):
CAGTGTAAGACATGTCTGAGACATGCATCAACTATAAATGTGACAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCATGGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGTGA
CATAAGG
Found at i:33546409 original size:44 final size:45
Alignment explanation
Indices: 33546059--33546416 Score: 184
Period size: 46 Copynumber: 7.7 Consensus size: 45
33546049 ATTTGTCTGC
* *
33546059 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-CACACTATG-AGAA
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAACTC-GA-T-TGTAG-A
* * **
33546104 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACG-AGA
1 -CAGTGTAAGACCATGTCTGGGACATGGCATCAAC-TCGA-TTGTAGA
** *
33546151 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG--TGACATAAGG
1 -C-AGTGTAAGACCATGTCTGGGACATGGCATC-AACTCGATTG---T-AGA
* ** * * *
33546199 CAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCTACTAAATGT-GT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAACT-C-GATTGTAGA
** *
33546243 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATGTGAGA
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAAC-TCGAT-TGT-AGA
* * *
33546291 GCTAGTGTAAGACCATGTCTGGGATATGGCATCAGCCTCGAATTCGATAGT
1 -C-AGTGTAAGACCATGTCTGGGACATGGCATCA-ACTCG-ATT-G-TAGA
* * *
33546342 CAGTGTAAGACCATGTCTAGGACATGGCATCAACTTGATT-TTGA
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGATTGTAGA
33546386 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
33546417 GGCATTATAC
Statistics
Matches: 254, Mismatches: 31, Indels: 56
0.74 0.09 0.16
Matches are distributed among these distances:
43 1 0.00
44 43 0.17
45 17 0.07
46 57 0.22
47 37 0.15
48 26 0.10
49 33 0.13
50 33 0.13
51 6 0.02
52 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (45 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGATTGTAGA
Found at i:33546421 original size:99 final size:99
Alignment explanation
Indices: 33546241--33546416 Score: 256
Period size: 99 Copynumber: 1.8 Consensus size: 99
33546231 TACTAAATGT
* **
33546241 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATGTGAGAGCTAGTGTAAGACCA
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATCAACATGGATATGTGAGAGCTAGTGTAAGACCA
33546306 TGTCTGGGATATGGCATCAGCCTCGAATTCGATA
66 TGTCTGGGATATGGCATCAGCCTCGAATTCGATA
* *
33546340 GTCAGTGTAAGACCATGTCTAGGACATGGCATCAAC-TTGAT-T-T-TGA-C-AGTGTAAGACCA
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATCAACATGGATATGTGAGAGCTAGTGTAAGACCA
*
33546399 TGTCTGGGACATGGCATC
66 TGTCTGGGATATGGCATC
33546417 GGCATTATAC
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
93 29 0.41
94 1 0.01
95 2 0.03
96 1 0.01
97 1 0.01
98 4 0.06
99 33 0.46
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (99 bp):
GTCAGTGTAAGACCATGTCTAGGACATGGCATCAACATGGATATGTGAGAGCTAGTGTAAGACCA
TGTCTGGGATATGGCATCAGCCTCGAATTCGATA
Found at i:33547577 original size:21 final size:20
Alignment explanation
Indices: 33547552--33547591 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
33547542 GTTATAATGA
* *
33547552 CCACAGGGGTGTGTTGCCCTT
1 CCACACGGGCGTG-TGCCCTT
33547573 CCACACGGGCGTGTGCCCT
1 CCACACGGGCGTGTGCCCT
33547592 GTTTCAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.35, G:0.33, T:0.23
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCCTT
Found at i:33553142 original size:38 final size:38
Alignment explanation
Indices: 33553100--33553175 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
33553090 ATGATACTTA
*
33553100 GCCACCCTACCTTTTCCATGATTTTTTTTACATTTTAC
1 GCCACCCTACCTTTTCCATGATTATTTTTACATTTTAC
33553138 GCCACCCTACCTTTTCCATGATTATTTTTACATTTTAC
1 GCCACCCTACCTTTTCCATGATTATTTTTACATTTTAC
33553176 TTATTACTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.20, C:0.29, G:0.05, T:0.46
Consensus pattern (38 bp):
GCCACCCTACCTTTTCCATGATTATTTTTACATTTTAC
Found at i:33553320 original size:50 final size:48
Alignment explanation
Indices: 33553259--33553374 Score: 135
Period size: 50 Copynumber: 2.4 Consensus size: 48
33553249 TTTTGCTGAC
* *
33553259 AGACTTGTTTTATCATTTCAATCAAAAGGCTTCCATCAAATCATGT-AG
1 AGACTTATTTTATCATCTCAATCAAAAGGCTTCCATCAAATCAT-TCAG
* ** * *
33553307 AGAGTCTTATTTTATCATCTCAGTCATCAGGCTTCTATCAACTCATTCAG
1 AGA--CTTATTTTATCATCTCAATCAAAAGGCTTCCATCAAATCATTCAG
33553357 AGACTTATTTTATCATCT
1 AGACTTATTTTATCATCT
33553375 TATTCTTCCA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
48 18 0.31
49 1 0.02
50 39 0.67
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (48 bp):
AGACTTATTTTATCATCTCAATCAAAAGGCTTCCATCAAATCATTCAG
Found at i:33555439 original size:15 final size:15
Alignment explanation
Indices: 33555419--33555476 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
33555409 TGCATAATAG
*
33555419 AACAATAATAATGAA
1 AACAATAATAATAAA
33555434 AACAATAAT-ATAAA
1 AACAATAATAATAAA
** *
33555448 TAACAACGATAAAAAA
1 -AACAATAATAATAAA
33555464 AACAATAATAATA
1 AACAATAATAATA
33555477 GCAATACTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
14 4 0.12
15 26 0.76
16 4 0.12
ACGTcount: A:0.69, C:0.09, G:0.03, T:0.19
Consensus pattern (15 bp):
AACAATAATAATAAA
Found at i:33555716 original size:3 final size:3
Alignment explanation
Indices: 33555708--33555777 Score: 88
Period size: 3 Copynumber: 23.7 Consensus size: 3
33555698 AACAGTTAAA
* * *
33555708 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAC GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
33555756 GAT ATT AAT AAT AAT -AT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
33555778 AAAATTGAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
2 2 0.03
3 58 0.97
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:33555927 original size:29 final size:29
Alignment explanation
Indices: 33555878--33556015 Score: 88
Period size: 29 Copynumber: 4.8 Consensus size: 29
33555868 ATAATAATGA
* *
33555878 AAATAATATTAAT-ATATAAATAGAAATAG
1 AAAT-ATAATAATAATAGAAATAGAAATAG
* *
33555907 AAATATAATAATAGTAGAAATATAAATAG
1 AAATATAATAATAATAGAAATAGAAATAG
33555936 ATAA-ATAA-AA-AATAGACAAATA-ATAATAG
1 A-AATATAATAATAATAG--AAATAGA-AATAG
* * * * * *
33555965 TATTAGAATAACAAAATAAATAGAAATAG
1 AAATATAATAATAATAGAAATAGAAATAG
* *
33555994 AAACATAATAATAATAGCAATA
1 AAATATAATAATAATAGAAATA
33556016 ATATTTTAAA
Statistics
Matches: 82, Mismatches: 18, Indels: 18
0.69 0.15 0.15
Matches are distributed among these distances:
27 4 0.05
28 11 0.13
29 59 0.72
30 5 0.06
31 3 0.04
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.25
Consensus pattern (29 bp):
AAATATAATAATAATAGAAATAGAAATAG
Found at i:33556985 original size:15 final size:16
Alignment explanation
Indices: 33556967--33556998 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
33556957 TTTTTTACAA
33556967 TTTTTGCTTT-TTTTT
1 TTTTTGCTTTGTTTTT
33556982 TTTTTGCTTTGTTTTT
1 TTTTTGCTTTGTTTTT
33556998 T
1 T
33556999 CTTCTCTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.84
Consensus pattern (16 bp):
TTTTTGCTTTGTTTTT
Found at i:33560307 original size:58 final size:57
Alignment explanation
Indices: 33560161--33560307 Score: 145
Period size: 57 Copynumber: 2.6 Consensus size: 57
33560151 CATATAACAG
* * * * * * *
33560161 GATTGCCAGTCCAAGCTAAATCCTGTCTCTAACATATGCTCACAAGAGCTTAATTAG
1 GATTACCAGTCTAGGCTAAATCCTATCTGTAACATATGCTCACAAGAGATTAATTAA
* *
33560218 GATTACCAGTCTAGGCTAAATCCTAAT-TGTAACGTATGCTCA-AGAGGGATTATATTAA
1 GATTACCAGTCTAGGCTAAATCCT-ATCTGTAACATATGCTCACA-AGAGATTA-ATTAA
* * *
33560276 GATTACCCGTCTGGGCTAAATCCTTTCTGTAA
1 GATTACCAGTCTAGGCTAAATCCTATCTGTAA
33560308 TGAGGTCAAT
Statistics
Matches: 74, Mismatches: 12, Indels: 7
0.80 0.13 0.08
Matches are distributed among these distances:
56 1 0.01
57 41 0.55
58 32 0.43
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (57 bp):
GATTACCAGTCTAGGCTAAATCCTATCTGTAACATATGCTCACAAGAGATTAATTAA
Found at i:33561845 original size:42 final size:42
Alignment explanation
Indices: 33561798--33561894 Score: 185
Period size: 42 Copynumber: 2.3 Consensus size: 42
33561788 ATGGACAAAG
33561798 ACACGGGCGTGTGTCTCAGCCGTGTGTAGCACACGGCCTGGC
1 ACACGGGCGTGTGTCTCAGCCGTGTGTAGCACACGGCCTGGC
33561840 ACACGGGCGTGTGTCTCAGCCGTGTGTAGCACACGGCCTGGC
1 ACACGGGCGTGTGTCTCAGCCGTGTGTAGCACACGGCCTGGC
*
33561882 ACACGGGCATGTG
1 ACACGGGCGTGTG
33561895 ACTTAACCAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.15, C:0.30, G:0.36, T:0.19
Consensus pattern (42 bp):
ACACGGGCGTGTGTCTCAGCCGTGTGTAGCACACGGCCTGGC
Found at i:33565535 original size:20 final size:20
Alignment explanation
Indices: 33565507--33565548 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
33565497 GATAATTAAC
* *
33565507 CTTAGTTTAATTATATAATA
1 CTTAATTTAATTAAATAATA
33565527 CTTAATTTAATTAAATAATA
1 CTTAATTTAATTAAATAATA
33565547 CT
1 CT
33565549 CACATAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (20 bp):
CTTAATTTAATTAAATAATA
Found at i:33567724 original size:295 final size:296
Alignment explanation
Indices: 33567183--33567773 Score: 1166
Period size: 295 Copynumber: 2.0 Consensus size: 296
33567173 AAGAGAATTC
33567183 ATCTCCTTCAACTGAATGTGAGAAAGAACGAAGAGCTTGATGCCATAGCCAAGGGTTTTAAGCTT
1 ATCTCCTTCAACTGAATGTGAGAAAGAACGAAGAGCTTGATGCCATAGCCAAGGGTTTTAAGCTT
33567248 TTTAGCTTTAATTTCAAGTAAGTCTCTAGCCATTTTGCTTTGATTTTTATGGATATTGGAATCAT
66 TTTAGCTTTAATTTCAAGTAAGTCTCTAGCCATTTTGCTTTGATTTTTATGGATATTGGAATCAT
33567313 GGGAAGTTGATCCAACTAACCCATGTACTAGTTTACAAAATTTTTAAAGTTATAAAAAGTTTCCA
131 GGGAAGTTGATCCAACTAACCCATGTACTAGTTTACAAAATTTTTAAAGTTATAAAAAGTTTCCA
33567378 CGATAAAGAATTGAATGATTTTGGTGTTAAATTGTTAGAAATTAAGCTTAGTATGTGAAAAGGAC
196 CGATAAAGAATTGAATGATTTTGGTGTTAAATTGTTAGAAATTAAGCTTAGTATGTGAAAAGGAC
33567443 TAAATTGTAAAGCTTAATTATTAGTTTAGTACGTTA
261 TAAATTGTAAAGCTTAATTATTAGTTTAGTACGTTA
33567479 ATCTCCTTCAACTGAATGTGAGAAAGAACGAAGAGCTTGATGCCATAGCCAAGGGTTTTAAGCTT
1 ATCTCCTTCAACTGAATGTGAGAAAGAACGAAGAGCTTGATGCCATAGCCAAGGGTTTTAAGCTT
33567544 TTTAGCTTTAATTTCAAGTAAGTCTCTAGCCATTTTGCTTTGATTTTTATGGATATT-GAATCAT
66 TTTAGCTTTAATTTCAAGTAAGTCTCTAGCCATTTTGCTTTGATTTTTATGGATATTGGAATCAT
33567608 GGGAAGTTGATCCAACTAACCCATGTACTAGTTTACAAAATTTTTAAAGTTATAAAAAGTTTCCA
131 GGGAAGTTGATCCAACTAACCCATGTACTAGTTTACAAAATTTTTAAAGTTATAAAAAGTTTCCA
*
33567673 CGATAGAGAATTGAATGATTTTGGTGTTAAATTGTTAGAAATTAAGCTTAGTATGTGAAAAGGAC
196 CGATAAAGAATTGAATGATTTTGGTGTTAAATTGTTAGAAATTAAGCTTAGTATGTGAAAAGGAC
33567738 TAAATTGTAAAGCTTAATTATTAGTTTAGTACGTTA
261 TAAATTGTAAAGCTTAATTATTAGTTTAGTACGTTA
33567774 GGGACCAAAT
Statistics
Matches: 294, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
295 172 0.59
296 122 0.41
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (296 bp):
ATCTCCTTCAACTGAATGTGAGAAAGAACGAAGAGCTTGATGCCATAGCCAAGGGTTTTAAGCTT
TTTAGCTTTAATTTCAAGTAAGTCTCTAGCCATTTTGCTTTGATTTTTATGGATATTGGAATCAT
GGGAAGTTGATCCAACTAACCCATGTACTAGTTTACAAAATTTTTAAAGTTATAAAAAGTTTCCA
CGATAAAGAATTGAATGATTTTGGTGTTAAATTGTTAGAAATTAAGCTTAGTATGTGAAAAGGAC
TAAATTGTAAAGCTTAATTATTAGTTTAGTACGTTA
Found at i:33570902 original size:18 final size:18
Alignment explanation
Indices: 33570872--33570906 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
33570862 GATATTATTT
33570872 AACATAAATATCAAATTA
1 AACATAAATATCAAATTA
33570890 AACATTAAA-ATCAAATT
1 AACA-TAAATATCAAATT
33570907 CAAATATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (18 bp):
AACATAAATATCAAATTA
Found at i:33571121 original size:13 final size:13
Alignment explanation
Indices: 33571103--33571127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33571093 TGTATCTTTT
33571103 TTTTTAATATTTA
1 TTTTTAATATTTA
33571116 TTTTTAATATTT
1 TTTTTAATATTT
33571128 TACTATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTAATATTTA
Found at i:33576177 original size:6 final size:6
Alignment explanation
Indices: 33576166--33576190 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
33576156 TCAAACTATT
33576166 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
33576191 AGTTAGACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:33586222 original size:25 final size:23
Alignment explanation
Indices: 33586193--33586257 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
33586183 AATAAAAAAT
*
33586193 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
33586218 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
33586239 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
33586258 AATAATGAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:33586256 original size:19 final size:20
Alignment explanation
Indices: 33586219--33586257 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
33586209 TCAAATACAT
33586219 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
33586239 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
33586258 AATAATGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:33586761 original size:16 final size:17
Alignment explanation
Indices: 33586740--33586774 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
33586730 GAATTCAAAA
*
33586740 AATAATAA-TATAAATT
1 AATAATAATTAGAAATT
33586756 AATAATAATTAGAAATT
1 AATAATAATTAGAAATT
33586773 AA
1 AA
33586775 AAGAAGATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (17 bp):
AATAATAATTAGAAATT
Found at i:33590630 original size:2 final size:2
Alignment explanation
Indices: 33590623--33590649 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
33590613 GTGAGAAAGA
33590623 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
33590650 CACACATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33593631 original size:30 final size:31
Alignment explanation
Indices: 33593579--33593641 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
33593569 TAGCTATATC
*
33593579 TTTATAATTTTTAAAAGATTAAATTA-AATT
1 TTTATAATTTTTAAAAGATTAAAGTATAATT
**
33593609 TTTATAA-TTTTAGGAGAGTTAAAGTATAATT
1 TTTATAATTTTTAAAAGA-TTAAAGTATAATT
33593640 TT
1 TT
33593642 ACTTTTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 8 0.29
30 14 0.50
31 6 0.21
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (31 bp):
TTTATAATTTTTAAAAGATTAAAGTATAATT
Found at i:33602288 original size:38 final size:38
Alignment explanation
Indices: 33602227--33602429 Score: 230
Period size: 38 Copynumber: 5.3 Consensus size: 38
33602217 ATTTGATGTG
* * *
33602227 TATCCGGGCTTAAAGGCCCGCAGGCTTTATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCATGCTGGTATTA
*
33602267 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
*
33602305 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
* *
33602343 TATCCGGGTTAAATCCCACAGGCCT-AGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTATTA
* * * *
33602381 TAT-CGAGTTTAAAGTCCCGTAGGCTTCGTGCTGGTGTTA
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCATGCTGGTATTA
* *
33602420 TGTTCGGGTT
1 TATCCGGGTT
33602430 TTATACCTCG
Statistics
Matches: 143, Mismatches: 15, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
37 2 0.01
38 102 0.71
39 29 0.20
40 10 0.07
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
Found at i:33602326 original size:76 final size:77
Alignment explanation
Indices: 33602227--33602414 Score: 254
Period size: 76 Copynumber: 2.4 Consensus size: 77
33602217 ATTTGATGTG
* * * *
33602227 TATCCGGGCTTAAAGGCCCGCAGGCTTTATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTT
1 TATCCGGG-TTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCACAGGCCT
*
33602292 CGTGCTGGTATTA
65 AGTGCTGGTATTA
* *
33602305 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCACAGGCCTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCACAGGCCTA
33602369 GTGCTGGTATTA
66 GTGCTGGTATTA
* * *
33602381 TAT-CGAGTTTAAAGTCCCGTAGGCTTCGTGCTGG
1 TATCCG-GGTTAAAGTCCCGCAGGCTTCATGCTGG
33602415 TGTTATGTTC
Statistics
Matches: 99, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
75 2 0.02
76 65 0.66
77 24 0.24
78 8 0.08
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (77 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCACAGGCCTA
GTGCTGGTATTA
Found at i:33604801 original size:24 final size:24
Alignment explanation
Indices: 33604774--33604849 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
33604764 CATTTTCTGT
33604774 CATGTTGCCATGGTATCTTTCAAC
1 CATGTTGCCATGGTATCTTTCAAC
* * **
33604798 CATGGT-CTTAT--TAT-TTTCATGT
1 CATGTTGC-CATGGTATCTTTCA-AC
*
33604820 CACGTTGCCATGGTATCTTTCAAC
1 CATGTTGCCATGGTATCTTTCAAC
33604844 CATGTT
1 CATGTT
33604850 TTACACATTT
Statistics
Matches: 36, Mismatches: 10, Indels: 12
0.62 0.17 0.21
Matches are distributed among these distances:
21 5 0.14
22 9 0.25
23 2 0.06
24 15 0.42
25 5 0.14
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (24 bp):
CATGTTGCCATGGTATCTTTCAAC
Found at i:33604873 original size:91 final size:92
Alignment explanation
Indices: 33604733--33604959 Score: 309
Period size: 91 Copynumber: 2.5 Consensus size: 92
33604723 TTTGACATGA
* * * * *
33604733 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATG-TTGCCATGGTATCTTTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCA-GCTTGCCATGGTATCTTTCA
* * *
33604796 ACCATGGTCTTATTA-TTTTCATGTCACGT
64 ACCATGGTCTTA-CACATTTCATATCACGT
*
33604825 TGCCATGGTATCTTTCAACCAT-GTTTTACACATTTCATATCAGCTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGCTTGCCATGGTATCTTTCAAC
*
33604889 CATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTACACATTTCATATCACGT
33604916 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
33604960 AGAGTACACT
Statistics
Matches: 120, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
90 6 0.05
91 75 0.62
92 39 0.32
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGCTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGT
Found at i:33604959 original size:46 final size:46
Alignment explanation
Indices: 33604733--33604959 Score: 307
Period size: 46 Copynumber: 5.0 Consensus size: 46
33604723 TTTGACATGA
* * * * * *
33604733 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* * * *
33604779 TGCCATGGTATCTTTCAACCATGGTCTTATTA-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTA-CACATTTCATATCAGGT
* *
33604825 TGCCATGGTATCTTTCAACCAT-GTTTTACACATTTCATATCAGCT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
33604870 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
33604916 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
33604960 AGAGTACACT
Statistics
Matches: 162, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
44 1 0.01
45 41 0.25
46 120 0.74
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:33607109 original size:11 final size:11
Alignment explanation
Indices: 33607093--33607142 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
33607083 TATACTAATA
*
33607093 AATAATAATAT
1 AATAATAAAAT
33607104 AATAATAAAAT
1 AATAATAAAAT
*
33607115 ATATTATTAAAAT
1 A-A-TAATAAAAT
*
33607128 ATTAATAAAAT
1 AATAATAAAAT
33607139 AATA
1 AATA
33607143 TTTATCTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
11 22 0.69
12 1 0.03
13 9 0.28
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:33607156 original size:29 final size:27
Alignment explanation
Indices: 33607095--33607168 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 27
33607085 TACTAATAAA
*
33607095 TAATAATATAATAATAAAAT-ATATTAT
1 TAATAA-ATATTAATAAAATAATATTAT
33607122 T-A-AAATATTAATAAAATAATATTTAT
1 TAATAAATATTAATAAAATAATA-TTAT
33607148 CTAATAAATAATT-ATAAAATA
1 -TAATAAAT-ATTAATAAAATA
33607169 TCAAAATATC
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
24 12 0.30
25 5 0.12
26 5 0.12
27 2 0.05
28 1 0.03
29 12 0.30
30 3 0.08
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (27 bp):
TAATAAATATTAATAAAATAATATTAT
Found at i:33608227 original size:16 final size:17
Alignment explanation
Indices: 33608196--33608228 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
33608186 TTCATAAGTA
33608196 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
33608213 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
33608229 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:33608574 original size:46 final size:47
Alignment explanation
Indices: 33608514--33608741 Score: 304
Period size: 46 Copynumber: 5.0 Consensus size: 47
33608504 TTTGACATGA
* * * * * *
33608514 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
* ** * *
33608560 TGCCATGGTATCTTTCAACCATAGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
33608606 TGCCATGGTATCTTTCAACCATTGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
33608652 TGCCATGGTATGTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
33608698 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAG
33608742 AGAGCACACT
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 5 0.03
46 161 0.97
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
Found at i:33610915 original size:18 final size:18
Alignment explanation
Indices: 33610867--33610915 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 18
33610857 ATAATATAAT
33610867 TATTTAATTAATAAATATC
1 TATTTAA-TAATAAATATC
*
33610886 TTTTATAAAATAATAAATATC
1 TATT-T--AATAATAAATATC
33610907 TATTTAATA
1 TATTTAATA
33610916 TCTAATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
18 4 0.16
19 3 0.12
20 2 0.08
21 14 0.56
22 2 0.08
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTTAATAATAAATATC
Found at i:33611085 original size:29 final size:27
Alignment explanation
Indices: 33611014--33611085 Score: 65
Period size: 29 Copynumber: 2.5 Consensus size: 27
33611004 TATCATATAA
* *
33611014 ATATATTATAATATAATTATAATAAATT
1 ATATTTTATAAT-TTATTATAATAAATT
*
33611042 A-ATTTAATATTATTTATTACTAATAAATAT
1 ATATTT--TATAATTTATTA-TAATAAAT-T
33611072 ATATTTTATAATTT
1 ATATTTTATAATTT
33611086 GAAATCTAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
27 3 0.09
28 6 0.17
29 20 0.57
30 2 0.06
31 4 0.11
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (27 bp):
ATATTTTATAATTTATTATAATAAATT
Found at i:33612154 original size:117 final size:116
Alignment explanation
Indices: 33611901--33612326 Score: 374
Period size: 117 Copynumber: 3.6 Consensus size: 116
33611891 TTAATTTTTT
* * * *
33611901 TTGCGGCATTTA-TAACATAGCGCCGCTAATTCCACTAAATCCACAATTAAAATGACGATGTTTC
1 TTGCGGCGTTTATTAGC-TAGCGCCGCTAATTCCAC-AAA---GC-ATTAAAATGACGACGTTTC
** * *
33611965 CATTCAATTAAAAAAATTTTACGGTGTTTTTTAAAAAGCGCTGCTAATTCTTATCTA
60 CATTCAATTAAAAAAATACTACGGTGTTTTTTAAAAAGCGCCGCTAATTCTTATATA
* *
33612022 TTGCGGCGTTTATTAGCTAGGGCCGCTAATTCCACAAAGCATTAAAATGGCGACGTTTCCATTCA
1 TTGCGGCGTTTATTAGCTAGCGCCGCTAATTCCACAAAGCATTAAAATGACGACGTTTCCATTCA
* *
33612087 ATTACAAAAATACTACGGCT-TTTTTATAAAAAGCGCCGCTAGTTCTTATATA
66 ATTAAAAAAATACTACGG-TGTTTTT-TAAAAAGCGCCGCTAATTCTTATATA
* * * * * *
33612139 TTGCGGCGTTTATTAGCTAGCGTCGCTAATTTCACAAAGCATTAAAA-CAGCGTCCTTTTCATTC
1 TTGCGGCGTTTATTAGCTAGCGCCGCTAATTCCACAAAGCATTAAAATGA-CGACGTTTCCATTC
* *** ** ** * * * *
33612203 AGTTAAAATTTTTTTA-GGTGTTTTACAGAAAGCGCCGCTAATGCTGATCTA
65 AATTAAAAAAATACTACGGTGTTTTTTAAAAAGCGCCGCTAATTCTTATATA
* * * * * *
33612254 TTTCGGCATTTATAATCTAGCGCCGCTAATTCCACTAAACCCACAGTTAAAATGACGTCGTTTCC
1 TTGCGGCGTTTATTAGCTAGCGCCGCTAATTCCAC-AAA---GCA-TTAAAATGACGACGTTTCC
33612319 ATTCAATT
61 ATTCAATT
33612327 GAATTTTTTT
Statistics
Matches: 249, Mismatches: 45, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
115 50 0.20
116 52 0.21
117 89 0.36
119 2 0.01
120 24 0.10
121 29 0.12
122 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (116 bp):
TTGCGGCGTTTATTAGCTAGCGCCGCTAATTCCACAAAGCATTAAAATGACGACGTTTCCATTCA
ATTAAAAAAATACTACGGTGTTTTTTAAAAAGCGCCGCTAATTCTTATATA
Found at i:33612281 original size:115 final size:116
Alignment explanation
Indices: 33611961--33612288 Score: 381
Period size: 117 Copynumber: 2.8 Consensus size: 116
33611951 AATGACGATG
* * *
33611961 TTTCCATTCAATTAAAAAAATTTTACGGTGTTTTTTAAAAAGCGCTGCTAATTCTTATCTATTGC
1 TTTCCATTCAATTACAAAAATTTTACGGTGTTTTATAAAAAGCGCCGCTAATTCTTATCTATTGC
* ** *
33612026 GGCGTTTATTAGCTAGGGCCGCTAATTCCACAAAGCATTAAAATGGCGACG
66 GGCGTTTATTAGCTAGCGCCGCTAATTCCACAAAGCATTAAAACAGCGACC
** * * *
33612077 TTTCCATTCAATTACAAAAATACTACGGCTTTTTTATAAAAAGCGCCGCTAGTTCTTATATATTG
1 TTTCCATTCAATTACAAAAATTTTACGG-TGTTTTATAAAAAGCGCCGCTAATTCTTATCTATTG
* * *
33612142 CGGCGTTTATTAGCTAGCGTCGCTAATTTCACAAAGCATTAAAACAGCGTCC
65 CGGCGTTTATTAGCTAGCGCCGCTAATTCCACAAAGCATTAAAACAGCGACC
* * ** * * * * *
33612194 TTTTCATTCAGTTA-AAATTTTTTTA-GGTGTTTTACAGAAAGCGCCGCTAATGCTGATCTATTT
1 TTTCCATTCAATTACAAA-AATTTTACGGTGTTTTATAAAAAGCGCCGCTAATTCTTATCTATTG
* * *
33612257 CGGCATTTATAATCTAGCGCCGCTAATTCCAC
65 CGGCGTTTATTAGCTAGCGCCGCTAATTCCAC
33612289 TAAACCCACA
Statistics
Matches: 176, Mismatches: 34, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
115 55 0.31
116 30 0.17
117 91 0.52
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (116 bp):
TTTCCATTCAATTACAAAAATTTTACGGTGTTTTATAAAAAGCGCCGCTAATTCTTATCTATTGC
GGCGTTTATTAGCTAGCGCCGCTAATTCCACAAAGCATTAAAACAGCGACC
Found at i:33612625 original size:28 final size:28
Alignment explanation
Indices: 33612568--33612645 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 28
33612558 TTCAAATTTT
*
33612568 ATCCTTAAACCCT-AAAGCTGAAACTCTAA
1 ATCCTTAAACCCTAAAACCT--AACTCTAA
*
33612597 A-CCTTAAACCCTAAAATCTAACTCATAA
1 ATCCTTAAACCCTAAAACCTAACTC-TAA
*
33612625 ATCC-TCAACCCTAAAACCTAA
1 ATCCTTAAACCCTAAAACCTAA
33612646 AATAATTTGA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.12
28 30 0.70
29 8 0.19
ACGTcount: A:0.44, C:0.31, G:0.03, T:0.23
Consensus pattern (28 bp):
ATCCTTAAACCCTAAAACCTAACTCTAA
Found at i:33612736 original size:15 final size:15
Alignment explanation
Indices: 33612684--33612736 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
33612674 AAAATTAATT
*
33612684 ACCCTTAAACCCTAAT
1 ACCC-TAAACCCTAAA
*
33612700 ACCCTAACCCCTAAA
1 ACCCTAAACCCTAAA
** *
33612715 ATTCTAAACACTAAA
1 ACCCTAAACCCTAAA
33612730 ACCCTAA
1 ACCCTAA
33612737 CTATAAAATA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
15 25 0.86
16 4 0.14
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (15 bp):
ACCCTAAACCCTAAA
Found at i:33612956 original size:40 final size:40
Alignment explanation
Indices: 33612892--33612994 Score: 129
Period size: 40 Copynumber: 2.5 Consensus size: 40
33612882 TGCTTGATCT
*
33612892 TTTGCGGCTTTTTTTTCATAAACGCCGCTAATGTTTGACC
1 TTTGCGGCTTTTTTTTCATAAACGCCGCCAATGTTTGACC
* *
33612932 TTTGTGGCATTTTTTTT-ATAAACGCTGCCAATGTTTGACC
1 TTTGCGGC-TTTTTTTTCATAAACGCCGCCAATGTTTGACC
*
33612972 TTTTGCGG-TGTTTTTATCATAAA
1 -TTTGCGGCT-TTTTTTTCATAAA
33612995 TGTTGCTAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 34 0.63
41 19 0.35
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.46
Consensus pattern (40 bp):
TTTGCGGCTTTTTTTTCATAAACGCCGCCAATGTTTGACC
Found at i:33612986 original size:41 final size:40
Alignment explanation
Indices: 33612885--33613018 Score: 146
Period size: 41 Copynumber: 3.3 Consensus size: 40
33612875 CGGCGTTTGC
* *
33612885 TTGATCTTTTGCGGCTTTTTTTTCATAAACGCCGCTAATGT
1 TTGACCTTTTGCGG-TTTTTTTTCATAAACGCTGCTAATGT
* *
33612926 TTGACCTTTGTG-GCATTTTTTTT-ATAAACGCTGCCAATGT
1 TTGACCTTT-TGCG-GTTTTTTTTCATAAACGCTGCTAATGT
* * * *
33612966 TTGACCTTTTGCGGTGTTTTTATCATAAATGTTGCTAATGC
1 TTGACCTTTTGCGGT-TTTTTTTCATAAACGCTGCTAATGT
33613007 TTGACCTTTTGC
1 TTGACCTTTTGC
33613019 AAACGCCGCT
Statistics
Matches: 78, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
39 3 0.04
40 31 0.40
41 42 0.54
42 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.46
Consensus pattern (40 bp):
TTGACCTTTTGCGGTTTTTTTTCATAAACGCTGCTAATGT
Found at i:33613394 original size:34 final size:33
Alignment explanation
Indices: 33613356--33613436 Score: 85
Period size: 34 Copynumber: 2.4 Consensus size: 33
33613346 TGGTAAAAAT
* *
33613356 ATTTTTAAATTTT-TTTTATTTTTCGTA-AATTTAA
1 ATTTTTAAATTTTATTTTA-ATTTC-AAGAATTT-A
*
33613390 ATTTTAAAATTTTAATTTTAATTTCAAGAATTTA
1 ATTTTTAAATTTT-ATTTTAATTTCAAGAATTTA
33613424 ATTTTTAAATTTT
1 ATTTTTAAATTTT
33613437 CAGATTTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
34 26 0.65
35 9 0.22
36 5 0.12
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (33 bp):
ATTTTTAAATTTTATTTTAATTTCAAGAATTTA
Found at i:33613403 original size:15 final size:14
Alignment explanation
Indices: 33613381--33613454 Score: 55
Period size: 15 Copynumber: 5.3 Consensus size: 14
33613371 TTATTTTTCG
33613381 TAAA-TTTAAATTT
1 TAAATTTTAAATTT
33613394 TAAAATTTT-AATTT
1 T-AAATTTTAAATTT
* *
33613408 T-AATTTCAAGAATT
1 TAAATTTTAA-ATTT
*
33613422 TAATTTTTAAATTT
1 TAAATTTTAAATTT
* *
33613436 TCAGATTTTAAAATT
1 T-AAATTTTAAATTT
33613451 TAAA
1 TAAA
33613455 CTCAAGTATT
Statistics
Matches: 46, Mismatches: 9, Indels: 11
0.70 0.14 0.17
Matches are distributed among these distances:
12 5 0.11
13 2 0.04
14 19 0.41
15 20 0.43
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (14 bp):
TAAATTTTAAATTT
Found at i:33613467 original size:42 final size:43
Alignment explanation
Indices: 33613384--33613474 Score: 105
Period size: 42 Copynumber: 2.1 Consensus size: 43
33613374 TTTTTCGTAA
* **
33613384 ATTTAAATTTTAAAATTTTAATTTTAATTTCAAGAATTTAATT
1 ATTTAAATTTTAAAATTTTAAATTTAAACTCAAGAATTTAATT
* * *
33613427 -TTTAAATTTTCAGATTTTAAAATTTAAACTCAAGTA-TTAATT
1 ATTTAAATTTTAAAATTTT-AAATTTAAACTCAAGAATTTAATT
33613469 ATTTAA
1 ATTTAA
33613475 TTTATTAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
42 22 0.55
43 18 0.45
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (43 bp):
ATTTAAATTTTAAAATTTTAAATTTAAACTCAAGAATTTAATT
Found at i:33618006 original size:46 final size:45
Alignment explanation
Indices: 33617946--33618211 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
33617936 TTTGACATGA
* * * * * *
33617946 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
33617992 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
33618038 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
33618084 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
33618130 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
33618168 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
33618212 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:33618175 original size:38 final size:38
Alignment explanation
Indices: 33618124--33618199 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
33618114 ACATTTTATA
33618124 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
33618162 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
33618200 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:33620365 original size:11 final size:11
Alignment explanation
Indices: 33620349--33620400 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
33620339 TATACTAAAT
33620349 AAATAATAATA
1 AAATAATAATA
*
33620360 AAATAAT-ATT
1 AAATAATAATA
* *
33620370 AAATATCTCATA
1 AAATA-ATAATA
*
33620382 AAATATTAATA
1 AAATAATAATA
33620393 AAATAATA
1 AAATAATA
33620401 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:33624808 original size:54 final size:54
Alignment explanation
Indices: 33624743--33624935 Score: 196
Period size: 54 Copynumber: 3.5 Consensus size: 54
33624733 TCTTACAGCA
*
33624743 GGATTACCAGTCCAGGCTAAATCCCCCGTAATATAAACTCATAGAGTATCGTCG
1 GGATTACCAGTCCAAGCTAAATCCCCCGTAATATAAACTCATAGAGTATCGTCG
* * * * * *
33624797 GGATTATCAGTCCAAGCTAAATCCCCTAC-AACGACATATACTC-TAATGAG-CTCGGATCT
1 GGATTACCAGTCCAAGCTAAATCCCC--CGTA--ATATAAACTCAT-A-GAGTATC-G-TCG
*
33624856 GAATTACCAGTCC-AGACTAAATCCCCCGTAATATAAACTCATAGAGTATCGTCG
1 GGATTACCAGTCCAAG-CTAAATCCCCCGTAATATAAACTCATAGAGTATCGTCG
*
33624910 GGATTATCAGTCCAAGCTAAATCCCC
1 GGATTACCAGTCCAAGCTAAATCCCC
33624936 TACAACGACA
Statistics
Matches: 110, Mismatches: 16, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
54 47 0.43
55 7 0.06
56 13 0.12
57 13 0.12
58 7 0.06
59 23 0.21
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (54 bp):
GGATTACCAGTCCAAGCTAAATCCCCCGTAATATAAACTCATAGAGTATCGTCG
Found at i:33624868 original size:59 final size:59
Alignment explanation
Indices: 33624799--33624990 Score: 204
Period size: 59 Copynumber: 3.3 Consensus size: 59
33624789 TATCGTCGGG
*
33624799 ATTATCAGTCCAAGCTAAATCCCCTACAACGACATATACTCTAATGAGCTCGGATCTGA
1 ATTACCAGTCCAAGCTAAATCCCCTACAACGACATATACTCTAATGAGCTCGGATCTGA
** * * * *
33624858 ATTACCAGTCC-AGACTAAAT-CCC--C--CGTA-ATATAAACTCATAGAGTATC-G-TCGGG
1 ATTACCAGTCCAAG-CTAAATCCCCTACAACG-ACATATACTCTAAT-GAG-CTCGGATCTGA
*
33624912 ATTATCAGTCCAAGCTAAATCCCCTACAACGACATATACTCTAATGAGCTCGGATCTGA
1 ATTACCAGTCCAAGCTAAATCCCCTACAACGACATATACTCTAATGAGCTCGGATCTGA
*
33624971 ATTACCAGTCCAGGCTAAAT
1 ATTACCAGTCCAAGCTAAAT
33624991 TCATATCCTA
Statistics
Matches: 104, Mismatches: 16, Indels: 26
0.71 0.11 0.18
Matches are distributed among these distances:
54 30 0.29
55 10 0.10
56 3 0.03
57 3 0.03
58 10 0.10
59 48 0.46
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.25
Consensus pattern (59 bp):
ATTACCAGTCCAAGCTAAATCCCCTACAACGACATATACTCTAATGAGCTCGGATCTGA
Found at i:33624943 original size:113 final size:113
Alignment explanation
Indices: 33624745--33624990 Score: 483
Period size: 113 Copynumber: 2.2 Consensus size: 113
33624735 TTACAGCAGG
33624745 ATTACCAGTCCAGGCTAAATCCCCCGTAATATAAACTCATAGAGTATCGTCGGGATTATCAGTCC
1 ATTACCAGTCCAGGCTAAATCCCCCGTAATATAAACTCATAGAGTATCGTCGGGATTATCAGTCC
33624810 AAGCTAAATCCCCTACAACGACATATACTCTAATGAGCTCGGATCTGA
66 AAGCTAAATCCCCTACAACGACATATACTCTAATGAGCTCGGATCTGA
*
33624858 ATTACCAGTCCAGACTAAATCCCCCGTAATATAAACTCATAGAGTATCGTCGGGATTATCAGTCC
1 ATTACCAGTCCAGGCTAAATCCCCCGTAATATAAACTCATAGAGTATCGTCGGGATTATCAGTCC
33624923 AAGCTAAATCCCCTACAACGACATATACTCTAATGAGCTCGGATCTGA
66 AAGCTAAATCCCCTACAACGACATATACTCTAATGAGCTCGGATCTGA
33624971 ATTACCAGTCCAGGCTAAAT
1 ATTACCAGTCCAGGCTAAAT
33624991 TCATATCCTA
Statistics
Matches: 131, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 131 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (113 bp):
ATTACCAGTCCAGGCTAAATCCCCCGTAATATAAACTCATAGAGTATCGTCGGGATTATCAGTCC
AAGCTAAATCCCCTACAACGACATATACTCTAATGAGCTCGGATCTGA
Found at i:33627017 original size:46 final size:46
Alignment explanation
Indices: 33626790--33627017 Score: 341
Period size: 46 Copynumber: 5.0 Consensus size: 46
33626780 TTTGACATGA
* * * * * *
33626790 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* * *
33626836 TGCCATGGTATCTTTCAACCATGGTCTTACACTTTTCATGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
33626882 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
**
33626928 TGCCACAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
33626974 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
33627018 AGAGCACACT
Statistics
Matches: 169, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 165 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:33632840 original size:5 final size:5
Alignment explanation
Indices: 33632832--33632859 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
33632822 TTTAGAAGGC
33632832 AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAA
33632860 CAAACCCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:33635499 original size:43 final size:43
Alignment explanation
Indices: 33635399--33635508 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 43
33635389 TATGTTATCG
* * *
33635399 TGTAAGACCACGTCTGGGA-TGTTGGAATCGTACTTAATTTCG
1 TGTAAGACCACGTCTGGGACAGTTGGAATCGTACTTAATTACA
* * *
33635441 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTCATTACA
1 TGTAAGACCAC-GTCTGGGACAGTTGGAATCG-TACTTAATTACA
*
33635484 TGTAAGACCACGTCTGAGACA-TTGG
1 TGTAAGACCACGTCTGGGACAGTTGG
33635509 TATTGTACGA
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.02
42 24 0.43
43 30 0.54
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTTGGAATCGTACTTAATTACA
Found at i:33639175 original size:24 final size:23
Alignment explanation
Indices: 33639148--33639208 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
33639138 ATATAGTATT
33639148 TAAAAATATATACAT-AAGATGGTA
1 TAAAAATATATACATGAA-AT-GTA
*
33639172 TAAAAATATGTACATGGAAATGTA
1 TAAAAATATATACAT-GAAATGTA
33639196 TAAGAAATATATA
1 TAA-AAATATATA
33639209 TAATTAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 20 0.62
25 10 0.31
26 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.30
Consensus pattern (23 bp):
TAAAAATATATACATGAAATGTA
Found at i:33639388 original size:21 final size:21
Alignment explanation
Indices: 33639351--33639465 Score: 117
Period size: 21 Copynumber: 5.3 Consensus size: 21
33639341 ATATATATAT
* *
33639351 ATATAAATAATAGTATTAGAA
1 ATATAAATAATAATATTAAAA
*
33639372 ATATACAAT-ATAATATTAGAA
1 ATATA-AATAATAATATTAAAA
*
33639393 ATATACATATAATAGTATTAAAA
1 ATATA-A-ATAATAATATTAAAA
33639416 ATATATAACTAATAATATT-AAA
1 ATATA-AA-TAATAATATTAAAA
*
33639438 ATATATATAATAATATATAAAA
1 ATATAAATAATAATAT-TAAAA
33639460 ATATAA
1 ATATAA
33639466 TATTAAAAAC
Statistics
Matches: 81, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
20 9 0.11
21 25 0.31
22 22 0.27
23 25 0.31
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (21 bp):
ATATAAATAATAATATTAAAA
Found at i:33639397 original size:44 final size:45
Alignment explanation
Indices: 33639349--33639464 Score: 150
Period size: 44 Copynumber: 2.6 Consensus size: 45
33639339 ACATATATAT
*
33639349 ATATATAAATAATAGTATTAGAAATATACAA-T-ATAATATTAGAA
1 ATATATAAATAATAGTATTAAAAATATACAACTAATAATATTA-AA
* * *
33639393 ATATACATATAATAGTATTAAAAATATATAACTAATAATATTAAA
1 ATATATAAATAATAGTATTAAAAATATACAACTAATAATATTAAA
33639438 ATATATATAATAATA-TA-TAAAAATATA
1 ATATATA-AATAATAGTATTAAAAATATA
33639465 ATATTAAAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 37 0.59
45 11 0.17
46 15 0.24
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (45 bp):
ATATATAAATAATAGTATTAAAAATATACAACTAATAATATTAAA
Found at i:33639463 original size:8 final size:10
Alignment explanation
Indices: 33639399--33639467 Score: 54
Period size: 10 Copynumber: 6.8 Consensus size: 10
33639389 AGAAATATAC
*
33639399 ATATAATAGT
1 ATATAATAAT
*
33639409 AT-TAAAAAT
1 ATATAATAAT
33639418 ATATAACTAAT
1 ATATAA-TAAT
*
33639429 AATATTAAAATAT
1 -ATA-TAATA-AT
33639442 ATATAATAAT
1 ATATAATAAT
33639452 ATATAA-AA-
1 ATATAATAAT
33639460 ATATAATA
1 ATATAATA
33639468 TTAAAAACAT
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
8 6 0.12
9 10 0.21
10 13 0.27
11 7 0.15
12 7 0.15
13 5 0.10
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (10 bp):
ATATAATAAT
Found at i:33639689 original size:21 final size:20
Alignment explanation
Indices: 33639669--33639708 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 20
33639659 ATGTAAATAT
33639669 ATATACATACA-T-ATA-TA
1 ATATACATACACTAATATTA
33639686 ATATACATACACTAATATTA
1 ATATACATACACTAATATTA
33639706 ATA
1 ATA
33639709 ATAATAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.55
18 1 0.05
19 3 0.15
20 5 0.25
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (20 bp):
ATATACATACACTAATATTA
Found at i:33639691 original size:17 final size:16
Alignment explanation
Indices: 33639665--33639696 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
33639655 CTATATGTAA
33639665 ATATATATACATACAT
1 ATATATATACATACAT
33639681 ATATAATATACATACA
1 ATAT-ATATACATACA
33639697 CTAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:33639712 original size:3 final size:3
Alignment explanation
Indices: 33639698--33639858 Score: 59
Period size: 3 Copynumber: 53.7 Consensus size: 3
33639688 ATACATACAC
* *
33639698 TAA TAT TAA TAA TAA TAA -AA CTAGA -AA TAA TAA TAA TTAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA TAA
* * * ** * *
33639744 TAA TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG TAA
1 TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
33639789 TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA TAGA -AA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA
** *
33639834 -AA TAA TCG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
33639859 TGTAAAAAAA
Statistics
Matches: 114, Mismatches: 28, Indels: 32
0.66 0.16 0.18
Matches are distributed among these distances:
2 13 0.11
3 89 0.78
4 11 0.10
5 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:33640496 original size:2 final size:2
Alignment explanation
Indices: 33640491--33640528 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
33640481 GAAAGAAAAA
33640491 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
33640529 CTCCTATTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:33641511 original size:14 final size:15
Alignment explanation
Indices: 33641492--33641521 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
33641482 AATTGCATTT
33641492 TAAATATT-ATTTTA
1 TAAATATTAATTTTA
33641506 TAAATATTAATTTTA
1 TAAATATTAATTTTA
33641521 T
1 T
33641522 TCATAGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TAAATATTAATTTTA
Found at i:33644875 original size:21 final size:22
Alignment explanation
Indices: 33644820--33644914 Score: 77
Period size: 24 Copynumber: 4.1 Consensus size: 22
33644810 CCAGAGATAT
* *
33644820 AAAAAA-AATTTTACATGGAAA
1 AAAAAATAAATTTACATGTAAA
33644841 AAAATAATTAAATTTACATGTAAA
1 AAAA-AA-TAAATTTACATGTAAA
* *
33644865 AAAAGAT-AATTTAAATGAAATAAGA
1 AAAAAATAAATTTACATG---TAA-A
*
33644890 AAAAAATAAATTTACATGGAAA
1 AAAAAATAAATTTACATGTAAA
33644912 AAA
1 AAA
33644915 TAATTTAAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
21 13 0.22
22 7 0.12
23 3 0.05
24 20 0.34
25 7 0.12
26 9 0.15
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.25
Consensus pattern (22 bp):
AAAAAATAAATTTACATGTAAA
Found at i:33644945 original size:45 final size:45
Alignment explanation
Indices: 33644840--33644993 Score: 256
Period size: 45 Copynumber: 3.4 Consensus size: 45
33644830 TTACATGGAA
*
33644840 AAAAATAATTAAATTTACATGTAAAAAAAGATAATTTAAATGAAATAAG
1 AAAAA-AATTAAATTTACATG--GAAAAA-ATAATTTAAATGAAATAAG
33644889 AAAAAAA-TAAATTTACATGGAAAAAATAATTTAAATGAAATAAG
1 AAAAAAATTAAATTTACATGGAAAAAATAATTTAAATGAAATAAG
33644933 AAAAAAATTAAATTTACATGGAAAAAATAATTTAAATGAAATAAG
1 AAAAAAATTAAATTTACATGGAAAAAATAATTTAAATGAAATAAG
33644978 AAAAAAATTAAATTTA
1 AAAAAAATTAAATTTA
33644994 AATGAAATGA
Statistics
Matches: 103, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
44 26 0.25
45 58 0.56
47 12 0.12
48 2 0.02
49 5 0.05
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (45 bp):
AAAAAAATTAAATTTACATGGAAAAAATAATTTAAATGAAATAAG
Found at i:33644982 original size:116 final size:120
Alignment explanation
Indices: 33644829--33645064 Score: 308
Period size: 116 Copynumber: 2.0 Consensus size: 120
33644819 TAAAAAAAAT
* * *
33644829 TTTACATGGAAAAAAATAATTAAATTTACATGTAAAAAAAGAT-AATTTAAATGAAATAAGAAAA
1 TTTACATGGAAAAAAATAATTAAATTGAAATGTAAAAAAA-ATAAATTTAAATGAAATAACAAAA
* *
33644893 AAA-TAAATTTACAT-GGAA-A-AAATAATTTAAATGAAATAAGAAAAAAATTAAA
65 AAATTAAATTAAAATGGGAAGATAAATAATTTAAATGAAATAAGAAAAAAATTAAA
* *
33644945 TTTACATGG-AAAAAATAATTTAAA-TGAAATAAG-AAAAAAATTAAATTTAAATGAAATGACAA
1 TTTACATGGAAAAAAATAA-TTAAATTGAAAT--GTAAAAAAAATAAATTTAAATGAAATAACAA
*
33645007 AAAAATTAAATTAAAATGGGAAGATAAATAATTTAAATGAAATGAGAAAAAAATTAAA
63 AAAAATTAAATTAAAATGGGAAGATAAATAATTTAAATGAAATAAGAAAAAAATTAAA
33645065 CTTAAATGAA
Statistics
Matches: 104, Mismatches: 8, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
115 14 0.13
116 43 0.41
117 10 0.10
118 4 0.04
119 1 0.01
120 32 0.31
ACGTcount: A:0.62, C:0.02, G:0.10, T:0.26
Consensus pattern (120 bp):
TTTACATGGAAAAAAATAATTAAATTGAAATGTAAAAAAAATAAATTTAAATGAAATAACAAAAA
AATTAAATTAAAATGGGAAGATAAATAATTTAAATGAAATAAGAAAAAAATTAAA
Found at i:33644992 original size:27 final size:27
Alignment explanation
Indices: 33644954--33645085 Score: 127
Period size: 27 Copynumber: 5.1 Consensus size: 27
33644944 ATTTACATGG
33644954 AAAAAA-T-AATTTAAATGAAATAAGA
1 AAAAAATTAAATTTAAATGAAATAAGA
* *
33644979 AAAAAATTAAATTTAAATGAAATGACA
1 AAAAAATTAAATTTAAATGAAATAAGA
* **
33645006 AAAAAATTAAATTAAAATG--GGAAG-
1 AAAAAATTAAATTTAAATGAAATAAGA
* *
33645030 -ATAAA-T-AATTTAAATGAAATGAGA
1 AAAAAATTAAATTTAAATGAAATAAGA
*
33645054 AAAAAATTAAACTTAAATGAAATAAAGA
1 AAAAAATTAAATTTAAATGAAAT-AAGA
33645082 AAAA
1 AAAA
33645086 TAAAGTTAAA
Statistics
Matches: 83, Mismatches: 15, Indels: 15
0.73 0.13 0.13
Matches are distributed among these distances:
21 9 0.11
22 1 0.01
23 6 0.07
25 11 0.13
26 2 0.02
27 47 0.57
28 7 0.08
ACGTcount: A:0.65, C:0.02, G:0.10, T:0.23
Consensus pattern (27 bp):
AAAAAATTAAATTTAAATGAAATAAGA
Found at i:33645060 original size:75 final size:70
Alignment explanation
Indices: 33644909--33645102 Score: 241
Period size: 75 Copynumber: 2.7 Consensus size: 70
33644899 ATTTACATGG
* *
33644909 AAAAAA-T-AATTTAAATGAAATAAGAAAAAAATTAAATTTACATGGAAAAAATAATTTAAATGA
1 AAAAAATTAAATTTAAATGAAAT-A-AAAAAAATTAAATTAAAATGGAAAAAATAATTTAAATGA
33644972 AATAAGA
64 AATAAGA
33644979 AAAAAATTAAATTTAAATGAAATGACAAAAAAATTAAATTAAAATGGGAAGATAAATAATTTAAA
1 AAAAAATTAAATTTAAATGAAAT-A-AAAAAAATTAAATTAAAAT-GGAA-A-AAATAATTTAAA
*
33645044 TGAAATGAGA
61 TGAAATAAGA
* *
33645054 AAAAAATTAAACTTAAATGAAATAAAGAAAAA-TAAAGTTAAAACGGAAA
1 AAAAAATTAAATTTAAATGAAATAAA-AAAAATTAAA-TTAAAATGGAAA
33645103 GAAAGATAAC
Statistics
Matches: 110, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
70 6 0.05
71 1 0.01
72 33 0.30
73 14 0.13
74 13 0.12
75 43 0.39
ACGTcount: A:0.64, C:0.02, G:0.10, T:0.24
Consensus pattern (70 bp):
AAAAAATTAAATTTAAATGAAATAAAAAAAATTAAATTAAAATGGAAAAAATAATTTAAATGAAA
TAAGA
Found at i:33645201 original size:23 final size:22
Alignment explanation
Indices: 33645157--33645201 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
33645147 ATTTGTATAG
*
33645157 GAAAAAAATAATAAATTTAAAT
1 GAAAAAAATAATAAATTGAAAT
33645179 GAAAAAAATTAATGAAA-TGAAAT
1 GAAAAAAA-TAAT-AAATTGAAAT
33645202 ATGAATATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 8 0.40
23 9 0.45
24 3 0.15
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (22 bp):
GAAAAAAATAATAAATTGAAAT
Found at i:33645641 original size:25 final size:26
Alignment explanation
Indices: 33645595--33645644 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
33645585 TGAGAATTTT
* *
33645595 TTTTTTAATTTAAGTGAAATTTAAAA
1 TTTTGTAATGTAAGTGAAATTTAAAA
*
33645621 TTTTGTAATGTAA-TGATATTTAAA
1 TTTTGTAATGTAAGTGAAATTTAAA
33645645 TTGAAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (26 bp):
TTTTGTAATGTAAGTGAAATTTAAAA
Found at i:33645751 original size:16 final size:15
Alignment explanation
Indices: 33645726--33645758 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
33645716 GAAAAAATAT
33645726 AAAATGAATTGAAAA
1 AAAATGAATTGAAAA
33645741 AAAATTGAATTGAAAA
1 AAAA-TGAATTGAAAA
33645757 AA
1 AA
33645759 GATAACTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.21
Consensus pattern (15 bp):
AAAATGAATTGAAAA
Found at i:33645849 original size:5 final size:5
Alignment explanation
Indices: 33645839--33645914 Score: 53
Period size: 5 Copynumber: 13.6 Consensus size: 5
33645829 TAAAAAAATT
* * *
33645839 AATGA AATGA AATGTTA AATGA GATATGA ATATCA AATGA AATGTA ATTTGT
1 AATGA AATGA AATG--A AATGA -A-ATGA A-ATGA AATGA AATG-A A-ATGA
33645891 AATGA ATATGA AATGA AATGA AAT
1 AATGA A-ATGA AATGA AATGA AAT
33645915 AAAAGTTTAA
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
5 32 0.55
6 15 0.26
7 11 0.19
ACGTcount: A:0.51, C:0.01, G:0.17, T:0.30
Consensus pattern (5 bp):
AATGA
Found at i:33645895 original size:35 final size:33
Alignment explanation
Indices: 33645839--33645929 Score: 96
Period size: 33 Copynumber: 2.7 Consensus size: 33
33645829 TAAAAAAATT
33645839 AATGAAATGAAATGTTAAATGAGATATGAATATCA
1 AATGAAATGAAATGTTAAATGA-ATATGAA-ATCA
* * *
33645874 AATGAAATGTAAT-TTGTAATGAATATGAAATGA
1 AATGAAATGAAATGTT-AAATGAATATGAAATCA
*
33645907 AATGAAAT-AAAAGTTTAAATGAA
1 AATGAAATGAAATG-TTAAATGAA
33645930 AAAAATTATA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
32 2 0.04
33 17 0.36
34 11 0.23
35 17 0.36
ACGTcount: A:0.53, C:0.01, G:0.16, T:0.30
Consensus pattern (33 bp):
AATGAAATGAAATGTTAAATGAATATGAAATCA
Found at i:33645987 original size:39 final size:39
Alignment explanation
Indices: 33645906--33645994 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 39
33645896 ATATGAAATG
** * *
33645906 AAATGAAATAAAAGTTTAAATGAAAAAAATTATAAATTT
1 AAATGAAATAAAAACTGAAATGAAAAAAATTAGAAATTT
33645945 AAATGAAAATAAAAACTGAAATGAAAAAAA-T-GAAATTAT
1 AAATG-AAATAAAAACTGAAATGAAAAAAATTAGAAATT-T
33645984 AAAT-AAATAAA
1 AAATGAAATAAA
33645995 TTTAAATGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
37 7 0.16
38 5 0.11
39 11 0.25
40 21 0.48
ACGTcount: A:0.66, C:0.01, G:0.08, T:0.25
Consensus pattern (39 bp):
AAATGAAATAAAAACTGAAATGAAAAAAATTAGAAATTT
Found at i:33646016 original size:16 final size:16
Alignment explanation
Indices: 33645839--33646033 Score: 79
Period size: 16 Copynumber: 12.2 Consensus size: 16
33645829 TAAAAAAATT
33645839 AATGAAATGAAATGTTA
1 AATGAAATGAAATG-TA
*
33645856 AATGAGATATGAATAT-CA
1 AATGA-A-ATGAA-ATGTA
*
33645874 AATGAAATGTAATTTGT-
1 AATGAAATG-AA-ATGTA
33645891 AATGAATATGAAATG-A
1 AATGAA-ATGAAATGTA
* *
33645907 AATGAAATAAAAGTTTA
1 AATGAAATGAAA-TGTA
* *
33645924 AATGAAA-AAAATTATA
1 AATGAAATGAAA-TGTA
* *
33645940 AATTTAAATGAAA-ATA
1 AA-TGAAATGAAATGTA
*
33645956 AA--AACTGAAATG-A
1 AATGAAATGAAATGTA
* *
33645969 AA-AAAATGAAATTATA
1 AATGAAATGAAA-TGTA
*
33645985 AAT-AAAT-AAATTTA
1 AATGAAATGAAATGTA
33645999 AATGAAATGAAATGTA
1 AATGAAATGAAATGTA
** *
33646015 AACAAAATGAAATGGA
1 AATGAAATGAAATGTA
33646031 AAT
1 AAT
33646034 TAAAATGGAA
Statistics
Matches: 140, Mismatches: 20, Indels: 37
0.71 0.10 0.19
Matches are distributed among these distances:
13 10 0.07
14 13 0.09
15 13 0.09
16 54 0.39
17 30 0.21
18 13 0.09
19 5 0.04
20 2 0.01
ACGTcount: A:0.58, C:0.02, G:0.13, T:0.27
Consensus pattern (16 bp):
AATGAAATGAAATGTA
Found at i:33646022 original size:21 final size:21
Alignment explanation
Indices: 33645998--33646037 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
33645988 AAATAAATTT
33645998 AAATGAAAT-GAAATGTAAACA
1 AAATGAAATGGAAAT-TAAACA
33646019 AAATGAAATGGAAATTAAA
1 AAATGAAATGGAAATTAAA
33646038 ATGGAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.62, C:0.03, G:0.15, T:0.20
Consensus pattern (21 bp):
AAATGAAATGGAAATTAAACA
Found at i:33648809 original size:20 final size:20
Alignment explanation
Indices: 33648781--33648818 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
33648771 TAATTTTGAG
*
33648781 ACTTCTACTGACACAAGTCC
1 ACTTATACTGACACAAGTCC
*
33648801 ACTTATACTGATACAAGT
1 ACTTATACTGACACAAGT
33648819 ATATCTGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (20 bp):
ACTTATACTGACACAAGTCC
Found at i:33649241 original size:29 final size:29
Alignment explanation
Indices: 33649186--33649241 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
33649176 AAGTAGATTG
* *
33649186 TAAAAGGTTTCTAGTTAAGCCTCAAAAGC
1 TAAAAGGTTTCTAGTTAAGCATAAAAAGC
*
33649215 TAAAGGGTTT-TAGTTAAGCTATAAAAA
1 TAAAAGGTTTCTAGTTAAGC-ATAAAAA
33649242 CTAGGAGGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (29 bp):
TAAAAGGTTTCTAGTTAAGCATAAAAAGC
Found at i:33651797 original size:7 final size:7
Alignment explanation
Indices: 33651781--33651810 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
33651771 AGATTTTTCA
*
33651781 TTATTTT
1 TTATTAT
33651788 TTATTAT
1 TTATTAT
33651795 TTATTAT
1 TTATTAT
33651802 TTATTAT
1 TTATTAT
33651809 TT
1 TT
33651811 TATAAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTATTAT
Found at i:33660117 original size:47 final size:49
Alignment explanation
Indices: 33659999--33660177 Score: 196
Period size: 47 Copynumber: 3.8 Consensus size: 49
33659989 TGTAACCCGC
* * * * *
33659999 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG--GC-GTTCGCAC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
33660045 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-AGTTCACAT
* *
33660095 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA--CATTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
*
33660139 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
33660178 TTTAACCATC
Statistics
Matches: 113, Mismatches: 9, Indels: 19
0.80 0.06 0.13
Matches are distributed among these distances:
43 3 0.03
44 5 0.04
45 1 0.01
46 36 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 2 0.02
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCAGTTCACAT
Found at i:33660167 original size:94 final size:93
Alignment explanation
Indices: 33660007--33660177 Score: 279
Period size: 94 Copynumber: 1.8 Consensus size: 93
33659997 GCCCATAAGT
* * *
33660007 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCACCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACACCCATAAGTGAACTCGGACTCAACTCAA
33660072 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
33660100 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGAC-GTTCACACCCATAAGTGAACTCGGACTCAACTCA
33660165 ACGAGTTCGGATG
65 ACGAGTTCGGATG
33660178 TTTAACCATC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 27 0.38
94 44 0.62
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACACCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:33662315 original size:18 final size:18
Alignment explanation
Indices: 33662292--33662328 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
33662282 GCTAGGGCAA
*
33662292 ATGGAGAAGGAAGAAGAG
1 ATGGAGAAAGAAGAAGAG
33662310 ATGGAGAAAGAAGAAGAG
1 ATGGAGAAAGAAGAAGAG
33662328 A
1 A
33662329 AGCAAAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.41, T:0.05
Consensus pattern (18 bp):
ATGGAGAAAGAAGAAGAG
Found at i:33662356 original size:6 final size:6
Alignment explanation
Indices: 33662347--33662376 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
33662337 ATGAAAAATG
*
33662347 AAAAAT AAAACT AAAACT AAAACT AAAACT
1 AAAACT AAAACT AAAACT AAAACT AAAACT
33662377 TATCTGTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAACT
Found at i:33670479 original size:25 final size:24
Alignment explanation
Indices: 33670451--33670507 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
33670441 TAATATAATA
*
33670451 ATATTATCTGATATT-TTATTAATTT
1 ATATTATCT-ATATTACTATT-ATTT
33670476 ATATTCATCTATATTACTATTATTT
1 ATATT-ATCTATATTACTATTATTT
*
33670501 AAATTAT
1 ATATTAT
33670508 TTAAAACTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 2 0.07
25 18 0.64
26 8 0.29
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (24 bp):
ATATTATCTATATTACTATTATTT
Found at i:33673490 original size:36 final size:36
Alignment explanation
Indices: 33673450--33673520 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
33673440 TTTAAGTTAA
*
33673450 TTAAATTATCTATCGAATATTCAAATATGTTAAATG
1 TTAAATTATCTATCGAATATTCAAATATGCTAAATG
*
33673486 TTAAATTATCTATCGGATATTCAAATATGCTAAAT
1 TTAAATTATCTATCGAATATTCAAATATGCTAAAT
33673521 ATTTGTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (36 bp):
TTAAATTATCTATCGAATATTCAAATATGCTAAATG
Found at i:33679191 original size:9 final size:9
Alignment explanation
Indices: 33679177--33679208 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
33679167 CAGAGAAAGA
33679177 AAAATAAAT
1 AAAATAAAT
33679186 AAAATAAAT
1 AAAATAAAT
33679195 AAAATAAAAT
1 AAAAT-AAAT
33679205 AAAA
1 AAAA
33679209 CTTCGTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAATAAAT
Found at i:33679192 original size:5 final size:5
Alignment explanation
Indices: 33679177--33679208 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
33679167 CAGAGAAAGA
33679177 AAAAT -AAAT AAAAT -AAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
33679209 CTTCGTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
4 8 0.32
5 17 0.68
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:33681816 original size:24 final size:23
Alignment explanation
Indices: 33681776--33681822 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
33681766 TTTTAATGTA
* *
33681776 TTAAGTATAATTCTTAAATATTT
1 TTAAGTATAAATATTAAATATTT
*
33681799 TTAAGTAATAAATATTAATTATTT
1 TTAAGT-ATAAATATTAAATATTT
33681823 ATAAAATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (23 bp):
TTAAGTATAAATATTAAATATTT
Found at i:33682846 original size:2 final size:2
Alignment explanation
Indices: 33682839--33682869 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
33682829 ATCCATTATT
33682839 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33682870 AACATCCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33684943 original size:28 final size:28
Alignment explanation
Indices: 33684901--33684973 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 28
33684891 ATTTAATTAA
* * *
33684901 ATAAA-TTTAATAATATTAAAATTTAAAT
1 ATAAATTTTAA-AATATAAAAAATAAAAT
*
33684929 TTAAATTTTAAAATATAAAAAATAAAAT
1 ATAAATTTTAAAATATAAAAAATAAAAT
33684957 ATAAATTCTTTAAAATA
1 ATAAA-T-TTTAAAATA
33684974 AAATTGAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 22 0.59
29 6 0.16
30 9 0.24
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (28 bp):
ATAAATTTTAAAATATAAAAAATAAAAT
Found at i:33684947 original size:14 final size:14
Alignment explanation
Indices: 33684901--33684978 Score: 54
Period size: 14 Copynumber: 5.5 Consensus size: 14
33684891 ATTTAATTAA
33684901 ATAAA-TTTAATAAT
1 ATAAATTTTAA-AAT
*
33684915 ATTAAAATTT-AAAT
1 A-TAAATTTTAAAAT
*
33684929 TTAAATTTTAAAAT
1 ATAAATTTTAAAAT
***
33684943 ATAAAAAATAAAAT
1 ATAAATTTTAAAAT
33684957 ATAAATTCTTTAAAAT
1 ATAAA-T-TTTAAAAT
33684973 A-AAATT
1 ATAAATT
33684979 GAAAAATTAA
Statistics
Matches: 50, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
13 8 0.16
14 24 0.48
15 8 0.16
16 10 0.20
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (14 bp):
ATAAATTTTAAAAT
Found at i:33685282 original size:18 final size:18
Alignment explanation
Indices: 33685254--33685338 Score: 70
Period size: 18 Copynumber: 4.8 Consensus size: 18
33685244 TTTTAAAAAT
*
33685254 TATTTTT-ATAATTTTTA
1 TATTTTTAAAAATTTTTA
* *
33685271 TATTTTTAATAATTTATA
1 TATTTTTAAAAATTTTTA
*
33685289 -ATTTATAAAATATTTTTAAA
1 TATTTTTAAAA-ATTTTT--A
33685309 TATTTTT--AAATTTTTA
1 TATTTTTAAAAATTTTTA
*
33685325 AATTTTTAAAAATT
1 TATTTTTAAAAATT
33685339 AATTAATTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
16 7 0.13
17 15 0.27
18 25 0.45
19 2 0.04
20 1 0.02
21 5 0.09
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTTTAAAAATTTTTA
Found at i:33685284 original size:45 final size:46
Alignment explanation
Indices: 33685235--33685325 Score: 114
Period size: 45 Copynumber: 2.0 Consensus size: 46
33685225 TATTAGCAAT
** * *
33685235 TAATTAATTTTTTA-AAAATTATTTTTATA-ATTTTTATATTTTTAA
1 TAATTAATAATTTATAAAA-TATTTTTAAATATTTTTAAATTTTTAA
*
33685280 TAATTTATAATTTATAAAATATTTTTAAATATTTTTAAATTTTTAA
1 TAATTAATAATTTATAAAATATTTTTAAATATTTTTAAATTTTTAA
33685326 ATTTTTAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
45 20 0.51
46 19 0.49
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (46 bp):
TAATTAATAATTTATAAAATATTTTTAAATATTTTTAAATTTTTAA
Found at i:33685285 original size:10 final size:9
Alignment explanation
Indices: 33685255--33685332 Score: 58
Period size: 8 Copynumber: 8.8 Consensus size: 9
33685245 TTTAAAAATT
33685255 ATTTTTATA
1 ATTTTTATA
33685264 ATTTTTAT-
1 ATTTTTATA
33685272 ATTTTTAATA
1 ATTTTT-ATA
33685282 A--TTTATA
1 ATTTTTATA
* *
33685289 ATTTATAAAA
1 ATTT-TTATA
*
33685299 TATTTTTAAA
1 -ATTTTTATA
33685309 TATTTTTA-A
1 -ATTTTTATA
33685318 ATTTTTA-A
1 ATTTTTATA
33685326 ATTTTTA
1 ATTTTTA
33685333 AAAATTAATT
Statistics
Matches: 60, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
7 4 0.07
8 24 0.40
9 12 0.20
10 16 0.27
11 4 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
ATTTTTATA
Done.