Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 118 of 433
Found at i:36006545 original size:15 final size:14
Alignment explanation
Indices: 36006524--36006561 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
36006514 TTGTTACAGA
36006524 AACTTTTCTTC-CTT
1 AACTTTTCTTCTC-T
36006538 AACGTTTTCTTCTCT
1 AAC-TTTTCTTCTCT
36006553 AACTTTTCT
1 AACTTTTCT
36006562 GTTTTCTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.41
15 12 0.55
16 1 0.05
ACGTcount: A:0.16, C:0.26, G:0.03, T:0.55
Consensus pattern (14 bp):
AACTTTTCTTCTCT
Found at i:36006561 original size:14 final size:14
Alignment explanation
Indices: 36006524--36006561 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
36006514 TTGTTACAGA
36006524 AACTTTTCTTCCTT
1 AACTTTTCTTCCTT
36006538 AACGTTTTCTT-CTCT
1 AAC-TTTTCTTCCT-T
36006553 AACTTTTCT
1 AACTTTTCT
36006562 GTTTTCTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.16, C:0.26, G:0.03, T:0.55
Consensus pattern (14 bp):
AACTTTTCTTCCTT
Found at i:36009763 original size:40 final size:40
Alignment explanation
Indices: 36009669--36009893 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
36009659 TATTCGAATG
*
36009669 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGCGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GCGACT
* * * * *
36009710 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-CGACT
* *
36009750 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* *
36009790 ATATCCGGGCTAAGACCCGAAGGCATTTGAGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * *
36009830 ATATCCGGGCTAAG-TCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
*
36009870 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
36009894 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 128 0.81
41 28 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:36009843 original size:80 final size:80
Alignment explanation
Indices: 36009669--36009929 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
36009659 TATTCGAATG
* * * *
36009669 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAGACCCGAAGGC
* *
36009734 ATTCGTGCGAGTTGCT
65 ATTCGAGCGAGTCGCT
* *
36009750 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGACCCGAAGGCA
* *
36009815 TTTGAGCTAG-CGACT
66 TTCGAGCGAGTCG-CT
* * * *
36009830 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
36009895 TT-GTGCAAGTAGTT
66 TTCGAGCGAGTCGCT
*
36009909 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
36009930 ATTACTTGAG
Statistics
Matches: 157, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
78 14 0.09
79 13 0.08
80 98 0.62
81 32 0.20
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGAGCGAGTCGCT
Found at i:36009883 original size:120 final size:121
Alignment explanation
Indices: 36009669--36009893 Score: 332
Period size: 120 Copynumber: 1.9 Consensus size: 121
36009659 TATTCGAATG
* * *
36009669 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGAGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
36009734 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* *
36009790 ATATCCGGGCTAAGACCCGAAGGCATTTGAGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGAGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
36009853 CA-TCTGTGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
65 CATTC-GTGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
36009894 CTTGTGCAAG
Statistics
Matches: 94, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
119 5 0.05
120 58 0.62
121 31 0.33
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (121 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGAGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:36010994 original size:301 final size:301
Alignment explanation
Indices: 36010452--36011057 Score: 1203
Period size: 301 Copynumber: 2.0 Consensus size: 301
36010442 CCATACGAAA
36010452 ATGGCTTATATATATTTTTTGAGCATAATGTTATAATCATCTTGAATGTATATGTTCATTAAGAG
1 ATGGCTTATATATATTTTTTGAGCATAATGTTATAATCATCTTGAATGTATATGTTCATTAAGAG
36010517 GCATGGAAACGTTTGGCAACGATTAGCCATTGGAATGGTTAATCATGATCATATTTTGTGCTATA
66 GCATGGAAACGTTTGGCAACGATTAGCCATTGGAATGGTTAATCATGATCATATTTTGTGCTATA
36010582 TATGCTAAAGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAAGTCTACCTTAAAGGCAGAA
131 TATGCTAAAGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAAGTCTACCTTAAAGGCAGAA
36010647 GCTGACAGCAGCAGTGGTGTGAATTTGAAAAATCACTAAAAATAGTAGGAATGGATTTAAATAGT
196 GCTGACAGCAGCAGTGGTGTGAATTTGAAAAATCACTAAAAATAGTAGGAATGGATTTAAATAGT
36010712 GAATAAATTATGTAATCGAACGTTGATGAATCTACTTTCAT
261 GAATAAATTATGTAATCGAACGTTGATGAATCTACTTTCAT
36010753 ATGGCTTATATATATTTTTTGAGCATAATGTTATAATCATCTTGAATGTATATGTTCATTAAGAG
1 ATGGCTTATATATATTTTTTGAGCATAATGTTATAATCATCTTGAATGTATATGTTCATTAAGAG
36010818 GCATGGAAACGTTTGGCAACGATTAGCCATTGGAATGGTTAATCATGATCATATTTTGTGCTATA
66 GCATGGAAACGTTTGGCAACGATTAGCCATTGGAATGGTTAATCATGATCATATTTTGTGCTATA
36010883 TATGCTAAAGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAAGTCTACCTTAAAGGCAGAA
131 TATGCTAAAGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAAGTCTACCTTAAAGGCAGAA
*
36010948 GCTGACAGCAGTAGTGGTGTGAATTTGAAAAATCACTAAAAATAGTAGGAATGGATTTAAATAGT
196 GCTGACAGCAGCAGTGGTGTGAATTTGAAAAATCACTAAAAATAGTAGGAATGGATTTAAATAGT
36011013 GAATAAATTATGTAATCGAACGTTGATGAATCTACTTTCAT
261 GAATAAATTATGTAATCGAACGTTGATGAATCTACTTTCAT
36011054 ATGG
1 ATGG
36011058 AAGAAACGAA
Statistics
Matches: 304, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
301 304 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (301 bp):
ATGGCTTATATATATTTTTTGAGCATAATGTTATAATCATCTTGAATGTATATGTTCATTAAGAG
GCATGGAAACGTTTGGCAACGATTAGCCATTGGAATGGTTAATCATGATCATATTTTGTGCTATA
TATGCTAAAGGGCTAGTTGAATCATGGAAACTATGAAATAGGTAAAGTCTACCTTAAAGGCAGAA
GCTGACAGCAGCAGTGGTGTGAATTTGAAAAATCACTAAAAATAGTAGGAATGGATTTAAATAGT
GAATAAATTATGTAATCGAACGTTGATGAATCTACTTTCAT
Found at i:36018176 original size:40 final size:40
Alignment explanation
Indices: 36018082--36018306 Score: 215
Period size: 40 Copynumber: 5.6 Consensus size: 40
36018072 TATTCGAATG
* * ** * **
36018082 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-CT
* * *
36018123 ATAACCGGACTAAGATCCGAAGGCATTCATGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
36018163 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
* * *
36018203 ATATCCGGGCTAAGACCCGAAGGCATTTGA-GCTAG-CGACT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTCATGCGAGTTG-CT
* * * * *
36018243 ATATCCGGGCTAAGTCCCGAAAGCA-TCTGTGCTAG-TGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTC-ATGCGAGTTG-CT
36018283 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
36018307 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 123 0.79
41 31 0.20
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
Found at i:36018245 original size:80 final size:80
Alignment explanation
Indices: 36018082--36018306 Score: 251
Period size: 80 Copynumber: 2.8 Consensus size: 80
36018072 TATTCGAATG
* * * * * *
36018082 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
36018147 ATTCATGCGAGTTGCT
65 ATTCATGCGAGTCGCT
* * *
36018163 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-CTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAG-TGACTATATCCGGGCTAAGACCCGAAGGC
* *
36018227 ATTTGA-GCTAG-CGACT
65 A-TTCATGCGAGTCG-CT
* *
36018243 ATATCCGGGCTAAGTCCCGAAAGCA-TCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTC-GTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
36018307 CTTGTGCAAG
Statistics
Matches: 122, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
79 5 0.04
80 84 0.69
81 33 0.27
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCATGCGAGTCGCT
Found at i:36018296 original size:120 final size:121
Alignment explanation
Indices: 36018082--36018306 Score: 314
Period size: 120 Copynumber: 1.9 Consensus size: 121
36018072 TATTCGAATG
* * * *
36018082 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGAGCTAGGCGACTATAACCGGACTAAGATCCGAAAGC
*
36018147 ATTCATGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
66 ATTCATGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
* *
36018203 ATATCCGGGCTAAGACCCGAAGGCATTTGAGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGAGCTAGGCGACTATAACCGGACTAAGAT-CCGAAAG
* *
36018266 CA-TCTGTGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
65 CATTC-ATGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
36018307 CTTGTGCAAG
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
119 5 0.05
120 56 0.61
121 31 0.34
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (121 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGAGCTAGGCGACTATAACCGGACTAAGATCCGAAAGC
ATTCATGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
Found at i:36025123 original size:22 final size:20
Alignment explanation
Indices: 36025073--36025125 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
36025063 AACACTTGCA
*
36025073 AACATAT-ACCAACCAATTC
1 AACATATAACCAACCAAGTC
36025092 AAGCATTATAACCAAGCCAAGTC
1 AA-CA-TATAACCAA-CCAAGTC
36025115 TAACATATAAC
1 -AACATATAAC
36025126 ATGATATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 2 0.07
20 2 0.07
21 3 0.11
22 11 0.39
23 8 0.29
24 2 0.07
ACGTcount: A:0.47, C:0.26, G:0.06, T:0.21
Consensus pattern (20 bp):
AACATATAACCAACCAAGTC
Found at i:36035241 original size:21 final size:21
Alignment explanation
Indices: 36035215--36035255 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36035205 AGACAAGCGA
* *
36035215 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
36035236 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
36035256 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:36038767 original size:23 final size:22
Alignment explanation
Indices: 36038723--36038767 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
36038713 TGATTAAAGA
*
36038723 AATTACAAAAATATTATTTTAT
1 AATTACAAAAATATTATATTAT
36038745 AATTA-AAAAATAAATTATATTAT
1 AATTACAAAAAT--ATTATATTAT
36038768 TTAGGGGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 5 0.25
23 9 0.45
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AATTACAAAAATATTATATTAT
Found at i:36042093 original size:8 final size:8
Alignment explanation
Indices: 36042080--36042210 Score: 59
Period size: 8 Copynumber: 15.1 Consensus size: 8
36042070 TTTAGTTCTT
36042080 TTTATATA
1 TTTATATA
36042088 TTTATATA
1 TTTATATA
*
36042096 TTTTTTATAAA
1 ---TTTATATA
36042107 TTTATATA
1 TTTATATA
*
36042115 TTATATATT
1 TT-TATATA
36042124 TTTATATA
1 TTTATATA
* *
36042132 TTTTTCAAAA
1 TTTAT--ATA
**
36042142 TGTTATAGCC
1 T-TTATA-TA
36042152 TTTATATA
1 TTTATATA
* *
36042160 TATATTTAA
1 TTTATAT-A
36042169 TTGTATATA
1 TT-TATATA
*
36042178 TTTTTATAA
1 TTTATAT-A
36042187 TTTATA-A
1 TTTATATA
36042194 CTTTATA-A
1 -TTTATATA
36042202 TTTATATA
1 TTTATATA
36042210 T
1 T
36042211 ATTTTAAAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 26
0.68 0.12 0.19
Matches are distributed among these distances:
7 7 0.08
8 44 0.47
9 24 0.26
10 8 0.09
11 10 0.11
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (8 bp):
TTTATATA
Found at i:36042102 original size:19 final size:19
Alignment explanation
Indices: 36042078--36042136 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
36042068 TTTTTAGTTC
36042078 TTTTTATATATTTATATAT
1 TTTTTATATATTTATATAT
*
36042097 TTTTTATAAATTTATATA-
1 TTTTTATATATTTATATAT
* *
36042115 -TTATATATTTTTATATAT
1 TTTTTATATATTTATATAT
36042133 TTTT
1 TTTT
36042137 CAAAATGTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 14 0.42
19 19 0.58
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTTATATATTTATATAT
Found at i:36042158 original size:36 final size:35
Alignment explanation
Indices: 36042080--36042160 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 35
36042070 TTTAGTTCTT
* *
36042080 TTTATATATTTATATATTTTTTATAAATTTATATA
1 TTTATATATTTATATATTTTTCATAAATTTATACA
* *
36042115 TTATATATTTTTATATATTTTTCA-AAATGTTATAGCC
1 TT-TATATATTTATATATTTTTCATAAAT-TTATA-CA
36042152 TTTATATAT
1 TTTATATAT
36042161 ATATTTAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
35 6 0.16
36 30 0.79
37 2 0.05
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (35 bp):
TTTATATATTTATATATTTTTCATAAATTTATACA
Found at i:36042183 original size:28 final size:28
Alignment explanation
Indices: 36042090--36042185 Score: 71
Period size: 28 Copynumber: 3.5 Consensus size: 28
36042080 TTTATATATT
36042090 TATATATTTTT-TATA-A-ATTTATATAT-
1 TATATATTTTTATATATATATTTA-AT-TG
*
36042116 TATATATTTTTATATAT-T-TTTCAAAATG
1 TATATATTTTTATATATATATTT--AATTG
**
36042144 T-TATAGCCTTTATATATATATTTAATTG
1 TATATA-TTTTTATATATATATTTAATTG
36042172 TATATATTTTTATA
1 TATATATTTTTATA
36042186 ATTTATAACT
Statistics
Matches: 54, Mismatches: 6, Indels: 18
0.69 0.08 0.23
Matches are distributed among these distances:
26 11 0.20
27 12 0.22
28 22 0.41
29 6 0.11
30 3 0.06
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (28 bp):
TATATATTTTTATATATATATTTAATTG
Found at i:36048549 original size:12 final size:13
Alignment explanation
Indices: 36048524--36048552 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
36048514 TTTCACTCCA
36048524 TTTATGTATATAT
1 TTTATGTATATAT
36048537 TTTATGTAT-TAT
1 TTTATGTATATAT
36048549 TTTA
1 TTTA
36048553 ATATTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (13 bp):
TTTATGTATATAT
Found at i:36049058 original size:12 final size:12
Alignment explanation
Indices: 36049041--36049073 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
36049031 TCACCAACCC
36049041 ATATTAATTTTT
1 ATATTAATTTTT
36049053 ATATT-ATTTTT
1 ATATTAATTTTT
36049064 ATA-TAATTTT
1 ATATTAATTTT
36049074 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:36049231 original size:30 final size:30
Alignment explanation
Indices: 36049195--36049252 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
36049185 CAATTTAACA
*
36049195 AGCAAAT-ACCTCTAAAATAATAATAAAATT
1 AGCAAATGACCT-TAAAATAATAAAAAAATT
*
36049225 AGCAAATGTCCTTAAAATAATAAAAAAA
1 AGCAAATGACCTTAAAATAATAAAAAAA
36049253 ATTAACAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.59, C:0.12, G:0.05, T:0.24
Consensus pattern (30 bp):
AGCAAATGACCTTAAAATAATAAAAAAATT
Found at i:36049315 original size:22 final size:22
Alignment explanation
Indices: 36049290--36049332 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
36049280 TATCCAAACA
36049290 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
36049312 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
36049333 AATAGGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:36049336 original size:11 final size:11
Alignment explanation
Indices: 36049297--36049337 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
36049287 ACAATAACAA
36049297 CAAAATAGTAG
1 CAAAATAGTAG
* *
36049308 CAACATAATAG
1 CAAAATAGTAG
*
36049319 TAAAATAGTAG
1 CAAAATAGTAG
36049330 CAAAATAG
1 CAAAATAG
36049338 GAAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:36050461 original size:29 final size:29
Alignment explanation
Indices: 36050421--36050478 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
36050411 ATCCAACAAT
36050421 AATTAAATAAATAATTAAAAA-TTCATAAA
1 AATTAAATAAAT-ATTAAAAACTTCATAAA
*
36050450 AATT-AATGAAATATTAAAAACTTTATAAA
1 AATTAAAT-AAATATTAAAAACTTCATAAA
36050479 TAAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (29 bp):
AATTAAATAAATATTAAAAACTTCATAAA
Found at i:36050653 original size:40 final size:40
Alignment explanation
Indices: 36050609--36050685 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
36050599 ATGCTGCTAC
*
36050609 AGATTGAGCATTAGCGACATTTTTTGAAAAACGCCACTAT
1 AGATTGAGCATTAGCGACACTTTTTGAAAAACGCCACTAT
* *
36050649 AGATTGAGCATTAGCGGCGCTTTTTGAAAAACGCCAC
1 AGATTGAGCATTAGCGACACTTTTTGAAAAACGCCAC
36050686 AAAAAATAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (40 bp):
AGATTGAGCATTAGCGACACTTTTTGAAAAACGCCACTAT
Found at i:36050839 original size:40 final size:40
Alignment explanation
Indices: 36050729--36050921 Score: 187
Period size: 39 Copynumber: 4.9 Consensus size: 40
36050719 AGCTTTAGTG
** * * *
36050729 GCATTAGCGGTACTTTTTTAAAAACACTGCTATAGGTCGA
1 GCATTAGCGGCGCTTTCTGAAAAACGCTGCTATAGGTCGA
* *
36050769 GCATTAG-GGTGCTTTCTGAAAAACG-TCGCTATAGGCCGA
1 GCATTAGCGGCGCTTTCTGAAAAACGCT-GCTATAGGTCGA
* *
36050808 GCATTAGCGGCGCTTTCTGAAAAACGCCGCTAGAGAG--GA
1 GCATTAGCGGCGCTTTCTGAAAAACGCTGCTATAG-GTCGA
* * * * **
36050847 GCATTAGCGGCACTTTTTGAAAAACGCTACTATAGATTAA
1 GCATTAGCGGCGCTTTCTGAAAAACGCTGCTATAGGTCGA
* *
36050887 GTATTAGCGACGCTTTCTGAAAAACGCTGCTATAG
1 GCATTAGCGGCGCTTTCTGAAAAACGCTGCTATAG
36050922 AAAAATATTT
Statistics
Matches: 127, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 64 0.50
40 61 0.48
41 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTCTGAAAAACGCTGCTATAGGTCGA
Found at i:36050868 original size:79 final size:78
Alignment explanation
Indices: 36050767--36050918 Score: 180
Period size: 79 Copynumber: 1.9 Consensus size: 78
36050757 GCTATAGGTC
** * * * *
36050767 GAGCATTAGGGTGCTTTCTGAAAAACG-TCGCTATAGGCCGAGCATTAGCGGCGCTTTCTGAAAA
1 GAGCATTAGGGCACTTTCTGAAAAACGCT-ACTATAGACCAAGCATTAGCGACGCTTTCTGAAAA
36050831 ACGCCGCTAGAGAG
65 ACGCCGCTAGAGAG
* ** *
36050845 GAGCATTAGCGGCACTTTTTGAAAAACGCTACTATAGATTAAGTATTAGCGACGCTTTCTGAAAA
1 GAGCATTAG-GGCACTTTCTGAAAAACGCTACTATAGACCAAGCATTAGCGACGCTTTCTGAAAA
*
36050910 ACGCTGCTA
65 ACGCCGCTA
36050919 TAGAAAAATA
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
78 9 0.15
79 51 0.84
80 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (78 bp):
GAGCATTAGGGCACTTTCTGAAAAACGCTACTATAGACCAAGCATTAGCGACGCTTTCTGAAAAA
CGCCGCTAGAGAG
Found at i:36059147 original size:3 final size:3
Alignment explanation
Indices: 36059141--36059180 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
36059131 ACTATTATTT
36059141 ATC ATC ATC ATC AT- ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
36059181 TATTATTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.35, C:0.30, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:36059185 original size:3 final size:3
Alignment explanation
Indices: 36059179--36059545 Score: 323
Period size: 3 Copynumber: 121.7 Consensus size: 3
36059169 CATCATCATC
* * * * *
36059179 ATT ATT ATT ATT ATT ATT ATTT ACT ATT ATT ATTT ATA ATA ATA ATA
1 ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT A-TT ATT ATT ATT ATT
* * * * * *
36059226 ATA ATA ATA ATT ATT ATT ATT TTT ACT ATT ATTT ATT ATC ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT
* * * * *
36059272 ATT GTT -TCT ATT ATT GTT ATT ATT TTT TTCT ATT ATT ATTT ATT ATC
1 ATT ATT AT-T ATT ATT ATT ATT ATT ATT AT-T ATT ATT A-TT ATT ATT
* * * * *
36059319 ATT ATT ATT GTT ACT ACT ACT ACT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
36059367 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TTT ACT ATT ATTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
* * * * *
36059413 ATC ATT ATT ATT ACT ATT ATT ATTT ATT ATC ATT GTT ATC ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
* * * *
36059459 ATT ACT ATT ATT -TT ATT -TT ATT -TT TTT ACT ATG ATT ATT ATT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
36059503 -TT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
36059546 CATCATCATC
Statistics
Matches: 307, Mismatches: 44, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
2 11 0.04
3 275 0.90
4 21 0.07
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:36059588 original size:23 final size:22
Alignment explanation
Indices: 36059556--36059623 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 22
36059546 CATCATCATC
36059556 ATTTCTTATTTTGTTTTATTTAAT
1 ATTT-TTATTTTGTTTTATTT-AT
*
36059580 ATTTTTATTTTGTTTTATTTTT
1 ATTTTTATTTTGTTTTATTTAT
*
36059602 ATTTTTATATATTGATTTATTT
1 ATTTTTAT-T-TTGTTTTATTT
36059624 TACAATTAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.22
23 17 0.43
24 14 0.35
ACGTcount: A:0.21, C:0.01, G:0.04, T:0.74
Consensus pattern (22 bp):
ATTTTTATTTTGTTTTATTTAT
Found at i:36059614 original size:16 final size:16
Alignment explanation
Indices: 36059574--36059624 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
36059564 TTTTGTTTTA
36059574 TTTA-ATATTTTTATT
1 TTTATATATTTTTATT
*
36059589 TTGT-TTTATTTTTATT
1 TT-TATATATTTTTATT
36059605 TTTATATATTGATTTATT
1 TTTATATATT--TTTATT
36059623 TT
1 TT
36059625 ACAATTAGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
15 3 0.10
16 18 0.62
18 8 0.28
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (16 bp):
TTTATATATTTTTATT
Found at i:36066564 original size:31 final size:31
Alignment explanation
Indices: 36066529--36066587 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
36066519 CCGTACGTTG
36066529 CTTTTCTTAATCTTTATAATCAAATTTATTA
1 CTTTTCTTAATCTTTATAATCAAATTTATTA
*
36066560 CTTTTCTTGATCTTTATAATCAAATTTA
1 CTTTTCTTAATCTTTATAATCAAATTTA
36066588 ACTCATTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.14, G:0.02, T:0.54
Consensus pattern (31 bp):
CTTTTCTTAATCTTTATAATCAAATTTATTA
Found at i:36072675 original size:13 final size:13
Alignment explanation
Indices: 36072657--36072686 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
36072647 ACTTCTGCCG
36072657 CACGGCCAAGTCA
1 CACGGCCAAGTCA
36072670 CACGGCCAAGTCA
1 CACGGCCAAGTCA
36072683 CACG
1 CACG
36072687 CCCGTGTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.40, G:0.23, T:0.07
Consensus pattern (13 bp):
CACGGCCAAGTCA
Found at i:36082677 original size:28 final size:28
Alignment explanation
Indices: 36082608--36082708 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
36082598 GACAAGATTG
* * * *
36082608 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
36082638 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36082666 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
36082695 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36082709 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:36087462 original size:48 final size:48
Alignment explanation
Indices: 36087406--36087498 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
36087396 GAAGATGCTT
*
36087406 TTTCATCAAATAATAATAATGAAAGCTTCAAAGGTGATTGAAAACACG
1 TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAACACG
* * *
36087454 TTTCATCAAATAATAAAAATGAATGCTTCAGAGGTGCTTGAAAAC
1 TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAAC
36087499 GCATTTCAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (48 bp):
TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAACACG
Found at i:36087506 original size:48 final size:48
Alignment explanation
Indices: 36087406--36087511 Score: 149
Period size: 48 Copynumber: 2.2 Consensus size: 48
36087396 GAAGATGCTT
* *
36087406 TTTCATCAAATAATAATAATGAAAGCTTCAAAGGTGATTGAAAACACG
1 TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAACACA
* * * *
36087454 TTTCATCAAATAATAAAAATGAATGCTTCAGAGGTGCTTGAAAACGCA
1 TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAACACA
*
36087502 TTTCAACAAA
1 TTTCATCAAA
36087512 CATGTTTTCT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.27
Consensus pattern (48 bp):
TTTCATCAAATAATAAAAATGAAAGCTTCAAAGGTGATTGAAAACACA
Found at i:36088330 original size:47 final size:47
Alignment explanation
Indices: 36088259--36088357 Score: 117
Period size: 47 Copynumber: 2.1 Consensus size: 47
36088249 TCGACGGTCA
* ** * * *
36088259 TTATGCAGTTATGGATTGGGGTATAACTAGGATCCAATTGACAGTCG
1 TTATGCAGTCATGGATCAGAGTATAACTAGGAGCCAAATGACAGTCG
* * *
36088306 TTATGCAGTCATGGATCAGAGTATAACTGGGAGCCAAATGGCAGTTG
1 TTATGCAGTCATGGATCAGAGTATAACTAGGAGCCAAATGACAGTCG
36088353 TTATG
1 TTATG
36088358 TGGTCATGAG
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (47 bp):
TTATGCAGTCATGGATCAGAGTATAACTAGGAGCCAAATGACAGTCG
Found at i:36099091 original size:9 final size:9
Alignment explanation
Indices: 36099077--36099103 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
36099067 CACTAATGAT
36099077 TCACTCAAA
1 TCACTCAAA
36099086 TCACTCAAA
1 TCACTCAAA
36099095 TCACTCAAA
1 TCACTCAAA
36099104 GTGTTTAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22
Consensus pattern (9 bp):
TCACTCAAA
Found at i:36100684 original size:29 final size:29
Alignment explanation
Indices: 36100616--36100689 Score: 71
Period size: 29 Copynumber: 2.5 Consensus size: 29
36100606 GTCTTTTAAG
*
36100616 CAAATGATAAATAAAGACAAAAAGAAACACA
1 CAAATGAAAAATAAAGACAAAAAGAAA-A-A
* *
36100647 AAAAT-AAAAATAAA-AGAAAAAGAAAAA
1 CAAATGAAAAATAAAGACAAAAAGAAAAA
*
36100674 CAAATTGAAAATTAAA
1 CAAA-TGAAAAATAAA
36100690 TGGACTTAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
27 4 0.11
28 2 0.06
29 18 0.50
30 8 0.22
31 4 0.11
ACGTcount: A:0.73, C:0.07, G:0.08, T:0.12
Consensus pattern (29 bp):
CAAATGAAAAATAAAGACAAAAAGAAAAA
Found at i:36102399 original size:19 final size:19
Alignment explanation
Indices: 36102372--36102408 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36102362 AGGAAAAGAA
*
36102372 AAGAGAGGAAGATAGAGAT
1 AAGAAAGGAAGATAGAGAT
*
36102391 AAGAAAGGAAGATGGAGA
1 AAGAAAGGAAGATAGAGA
36102409 AGGAGGAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.38, T:0.08
Consensus pattern (19 bp):
AAGAAAGGAAGATAGAGAT
Found at i:36102460 original size:27 final size:27
Alignment explanation
Indices: 36102430--36102514 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 27
36102420 GAAATGGAGA
36102430 AAAAGAAGTAAGAAAGAATAGAAAGTG
1 AAAAGAAGTAAGAAAGAATAGAAAGTG
* ** * * *
36102457 AAAAGAAATGTGGAAGAAT-G-GAG-A
1 AAAAGAAGTAAGAAAGAATAGAAAGTG
36102481 AAAAGAAGTAAGAAAGAATAGAAAGTG
1 AAAAGAAGTAAGAAAGAATAGAAAGTG
36102508 AAAAGAA
1 AAAAGAA
36102515 ATGTGGAAGA
Statistics
Matches: 43, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
24 15 0.35
25 3 0.07
26 3 0.07
27 22 0.51
ACGTcount: A:0.62, C:0.00, G:0.27, T:0.11
Consensus pattern (27 bp):
AAAAGAAGTAAGAAAGAATAGAAAGTG
Found at i:36102480 original size:51 final size:51
Alignment explanation
Indices: 36102422--36102526 Score: 210
Period size: 51 Copynumber: 2.1 Consensus size: 51
36102412 AGGAAAGAGA
36102422 AATGGAGAAAAAGAAGTAAGAAAGAATAGAAAGTGAAAAGAAATGTGGAAG
1 AATGGAGAAAAAGAAGTAAGAAAGAATAGAAAGTGAAAAGAAATGTGGAAG
36102473 AATGGAGAAAAAGAAGTAAGAAAGAATAGAAAGTGAAAAGAAATGTGGAAG
1 AATGGAGAAAAAGAAGTAAGAAAGAATAGAAAGTGAAAAGAAATGTGGAAG
36102524 AAT
1 AAT
36102527 ACTGGAGAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.59, C:0.00, G:0.29, T:0.12
Consensus pattern (51 bp):
AATGGAGAAAAAGAAGTAAGAAAGAATAGAAAGTGAAAAGAAATGTGGAAG
Found at i:36102497 original size:24 final size:24
Alignment explanation
Indices: 36102422--36102499 Score: 75
Period size: 24 Copynumber: 3.1 Consensus size: 24
36102412 AGGAAAGAGA
36102422 AATGGAGAAAAAGAAGTAAGAAAG
1 AATGGAGAAAAAGAAGTAAGAAAG
* * * ** *
36102446 AATAGAAAGTGAAAAGAAATGTGGAAG
1 AAT-G-GAG-AAAAAGAAGTAAGAAAG
36102473 AATGGAGAAAAAGAAGTAAGAAAG
1 AATGGAGAAAAAGAAGTAAGAAAG
36102497 AAT
1 AAT
36102500 AGAAAGTGAA
Statistics
Matches: 39, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
24 18 0.46
25 3 0.08
26 3 0.08
27 15 0.38
ACGTcount: A:0.60, C:0.00, G:0.28, T:0.12
Consensus pattern (24 bp):
AATGGAGAAAAAGAAGTAAGAAAG
Found at i:36102524 original size:27 final size:27
Alignment explanation
Indices: 36102443--36102527 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 27
36102433 AGAAGTAAGA
36102443 AAGAATAGAAAGTGAAAAGAAATGTGG
1 AAGAATAGAAAGTGAAAAGAAATGTGG
* * * ** *
36102470 AAGAAT-G-GAG-AAAAAGAAGTAAGA
1 AAGAATAGAAAGTGAAAAGAAATGTGG
36102494 AAGAATAGAAAGTGAAAAGAAATGTGG
1 AAGAATAGAAAGTGAAAAGAAATGTGG
36102521 AAGAATA
1 AAGAATA
36102528 CTGGAGAAGG
Statistics
Matches: 43, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
24 15 0.35
25 3 0.07
26 3 0.07
27 22 0.51
ACGTcount: A:0.59, C:0.00, G:0.28, T:0.13
Consensus pattern (27 bp):
AAGAATAGAAAGTGAAAAGAAATGTGG
Found at i:36111491 original size:14 final size:14
Alignment explanation
Indices: 36111472--36111501 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36111462 ATTCAACTGA
36111472 ACTAAAATGATTAT
1 ACTAAAATGATTAT
*
36111486 ACTAAAGTGATTAT
1 ACTAAAATGATTAT
36111500 AC
1 AC
36111502 ATACTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (14 bp):
ACTAAAATGATTAT
Found at i:36118165 original size:46 final size:46
Alignment explanation
Indices: 36118115--36118230 Score: 196
Period size: 46 Copynumber: 2.5 Consensus size: 46
36118105 GATGAGTGCT
* *
36118115 AGTGTAAGACATGTCTGGAATATGCTTCGGCCTCGAGATGTAAGCG
1 AGTGTAAGACATGTCTGGAACATGCTTCGGCCTCGAGATGTAAGCA
*
36118161 AGTGTAAGACATGTCTGGGACATGCTTCGGCCTCGAGATGTAAGCA
1 AGTGTAAGACATGTCTGGAACATGCTTCGGCCTCGAGATGTAAGCA
*
36118207 AGTGTAAGACATGTCTGGGACATG
1 AGTGTAAGACATGTCTGGAACATG
36118231 GAATCGACAC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGAACATGCTTCGGCCTCGAGATGTAAGCA
Found at i:36126220 original size:21 final size:22
Alignment explanation
Indices: 36126180--36126221 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36126170 GCCTAAATGG
*
36126180 TCACACGGGTGTGTTGCCCCTC
1 TCACACGGGCGTGTTGCCCCTC
36126202 TCACACGGGCGTG-TGCCCCT
1 TCACACGGGCGTGTTGCCCCT
36126222 GTGTTAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.38, G:0.29, T:0.24
Consensus pattern (22 bp):
TCACACGGGCGTGTTGCCCCTC
Found at i:36126991 original size:24 final size:25
Alignment explanation
Indices: 36126945--36127007 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
36126935 TCCTGTACAT
*
36126945 GTATGCTCATAC-AGTTCTGAATCG
1 GTATGCTCATACGAGTTCTGAATCA
* *
36126969 GTATGCTCTTACGAGTTGT-AATCA
1 GTATGCTCATACGAGTTCTGAATCA
*
36126993 GTAAGCTCATACGAG
1 GTATGCTCATACGAG
36127008 CTGAGTAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (25 bp):
GTATGCTCATACGAGTTCTGAATCA
Found at i:36127024 original size:25 final size:26
Alignment explanation
Indices: 36126993--36127075 Score: 100
Period size: 25 Copynumber: 3.3 Consensus size: 26
36126983 GTTGTAATCA
*
36126993 GTAAGCTCATACGAGCTGAGTAATA-
1 GTAAGCTCATACAAGCTGAGTAATAG
* *
36127018 GTAAGCTCATGCAAGCTGAATAA-AG
1 GTAAGCTCATACAAGCTGAGTAATAG
* *
36127043 GTAAGCTTATACAAGTTGAG-AATAG
1 GTAAGCTCATACAAGCTGAGTAATAG
36127068 GTAAGCTC
1 GTAAGCTC
36127076 TCACGAGCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
24 3 0.06
25 45 0.94
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (26 bp):
GTAAGCTCATACAAGCTGAGTAATAG
Found at i:36128851 original size:52 final size:50
Alignment explanation
Indices: 36128778--36128916 Score: 152
Period size: 50 Copynumber: 2.7 Consensus size: 50
36128768 GTTGTGAAAA
* * **
36128778 CACATGTGTAGTCCTATGTGTAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACAAAATGG--TTAGGT
* * ***
36128830 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACAAAATGGTTAGGT
* * *
36128880 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 CACATGTGTAGTACTAAGTGTAGGCTACTATGTGTAC
36128917 CCGATAGCTT
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 38 0.52
52 35 0.48
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACAAAATGGTTAGGT
Found at i:36128917 original size:50 final size:51
Alignment explanation
Indices: 36128824--36128955 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 51
36128814 TAAAATGGTT
* * * * *
36128824 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGAT-GG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAGC
* *
36128874 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAGC
* * * *
36128925 TTCGATCACATGTATGGTACTAAGTGCAGGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGC
36128956 CACTTGTGTA
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 42 0.61
51 27 0.39
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (51 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAGC
Found at i:36128993 original size:50 final size:50
Alignment explanation
Indices: 36128885--36129009 Score: 135
Period size: 50 Copynumber: 2.5 Consensus size: 50
36128875 TAGGTCGCAT
* * *** *
36128885 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACAT
1 GTGTGGTACTAAGTGCAGGCCACT-TGCGTAAAAGATAGCTTCGATCACAA
* * * *
36128936 GTATGGTACTAAGTGCAGGCCACTTGTGTAAAAGATAGCTTTGGTCACAA
1 GTGTGGTACTAAGTGCAGGCCACTTGCGTAAAAGATAGCTTCGATCACAA
*
36128986 GTGTGGTACT-AGTGAAGGCCACTT
1 GTGTGGTACTAAGTGCAGGCCACTT
36129010 TTTGAAGAAG
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
49 13 0.21
50 28 0.45
51 21 0.34
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
GTGTGGTACTAAGTGCAGGCCACTTGCGTAAAAGATAGCTTCGATCACAA
Found at i:36131882 original size:51 final size:51
Alignment explanation
Indices: 36131771--36131892 Score: 120
Period size: 51 Copynumber: 2.4 Consensus size: 51
36131761 TAGGTCGCAT
*** * *
36131771 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCATAT
1 GTGTAGTACTAAGTGCAGGCTACTATGCGTAAAAGATAGCTTCGATCACAA
* * * * *
36131822 GTGTGGTACTAATTGCAGG-TCACTATGTGTAAAAGATAGCTTTGGTCACAA
1 GTGTAGTACTAAGTGCAGGCT-ACTATGCGTAAAAGATAGCTTCGATCACAA
* *
36131873 GTGTAGTACTATGTGAAGGC
1 GTGTAGTACTAAGTGCAGGC
36131893 CATTTTGTGA
Statistics
Matches: 55, Mismatches: 14, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
50 1 0.02
51 54 0.98
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (51 bp):
GTGTAGTACTAAGTGCAGGCTACTATGCGTAAAAGATAGCTTCGATCACAA
Found at i:36137023 original size:2 final size:2
Alignment explanation
Indices: 36137016--36137043 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
36137006 GTTTATATGA
36137016 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36137044 GCTGAATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36138705 original size:47 final size:47
Alignment explanation
Indices: 36138651--36139080 Score: 637
Period size: 47 Copynumber: 9.1 Consensus size: 47
36138641 TTAGGAATTT
** * *
36138651 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36138698 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36138745 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
*
36138796 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
36138843 ATGTGATGAATGTGAACAT-CTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGC-ATATATGTGATAAGGCCGAATGGCCA
* *
36138890 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36138937 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36138984 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36139031 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
36139078 ATG
1 ATG
36139081 CGAAATGTGT
Statistics
Matches: 350, Mismatches: 27, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 301 0.86
48 1 0.00
49 10 0.03
51 37 0.11
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36139190 original size:46 final size:46
Alignment explanation
Indices: 36139054--36139190 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
36139044 GAACATGTAT
* *
36139054 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
36139100 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
36139146 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
36139191 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:36145565 original size:13 final size:13
Alignment explanation
Indices: 36145547--36145572 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36145537 AAGAAATCGA
36145547 ACACGGGCGTGTC
1 ACACGGGCGTGTC
36145560 ACACGGGCGTGTC
1 ACACGGGCGTGTC
36145573 CCTGTCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:36146396 original size:74 final size:75
Alignment explanation
Indices: 36146275--36146427 Score: 247
Period size: 74 Copynumber: 2.0 Consensus size: 75
36146265 ATGGCCTAGC
*
36146275 ACACGGACGTGTGGCCTGGCCGTGTAGTTCAAATTGTTTTGCTGATGTCACAAAT-AGAGTTACA
1 ACACGGACGTGTGGCCTGGCCGTGTAGTTCAAATTATTTTGCTGATGTCACAAATAAGAGTTACA
*
36146339 TGGGCTGAGG
66 CGGGCTGAGG
*
36146349 ACACGAGA-GTGTGGCCTGGCCGTGTGGTTCAAATTATTTTGCTGATGTCACAAATAGAGAGTTA
1 ACACG-GACGTGTGGCCTGGCCGTGTAGTTCAAATTATTTTGCTGATGTCACAAATA-AGAGTTA
36146413 CACGGGCTGAGG
64 CACGGGCTGAGG
36146425 ACA
1 ACA
36146428 TGAGCATGTC
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
74 50 0.68
75 2 0.03
76 21 0.29
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (75 bp):
ACACGGACGTGTGGCCTGGCCGTGTAGTTCAAATTATTTTGCTGATGTCACAAATAAGAGTTACA
CGGGCTGAGG
Found at i:36151168 original size:24 final size:24
Alignment explanation
Indices: 36151127--36151173 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
36151117 ATGTATCTAT
36151127 ATATATATCATGTATAAATCATTTTC
1 ATATATATCATG-ATAAAT-ATTTTC
*
36151153 ATATATCTCATG-TAAATATTT
1 ATATATATCATGATAAATATTT
36151174 GTGGTATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 4 0.20
24 5 0.25
26 11 0.55
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (24 bp):
ATATATATCATGATAAATATTTTC
Found at i:36166745 original size:40 final size:40
Alignment explanation
Indices: 36166700--36166903 Score: 230
Period size: 40 Copynumber: 5.1 Consensus size: 40
36166690 CGGAATTTAG
* * *
36166700 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAAC
* *** * * *
36166740 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTTTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAAC
*
36166780 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
36166820 CCGGATACAGCAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAAC
* * * *
36166860 CCGAATATAATC-ACTAGCATAAATGCCTTCGGGGCTTAGC
1 CCGGATATAA-CAACTAGCACAAATGCCTTCGGGTCTTAAC
36166900 CCGG
1 CCGG
36166904 GTATCATTCA
Statistics
Matches: 136, Mismatches: 27, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
40 135 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:36166790 original size:80 final size:80
Alignment explanation
Indices: 36166695--36166903 Score: 267
Period size: 80 Copynumber: 2.6 Consensus size: 80
36166685 TTCTTCGGAA
* * *** * *
36166695 TTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCA
1 TTTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATACAGCAACTCGCA
36166759 CAAATGCCTTCGGGT
66 CAAATGCCTTCGGGT
* *
36166774 TTTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATACAGCAACTCGCA
1 TTTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATACAGCAACTCGCA
36166839 CAAATGCCTTCGGGT
66 CAAATGCCTTCGGGT
* * * * * * *
36166854 CTTAACCCGAATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGG
1 TTTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGG
36166904 GTATCATTCA
Statistics
Matches: 111, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 5 0.05
80 106 0.95
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
TTTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATACAGCAACTCGCA
CAAATGCCTTCGGGT
Found at i:36174173 original size:17 final size:17
Alignment explanation
Indices: 36174151--36174184 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36174141 TGAATTTACT
*
36174151 AAAATCAAATGCATAAA
1 AAAATCAAATGAATAAA
*
36174168 AAAATCTAATGAATAAA
1 AAAATCAAATGAATAAA
36174185 TGGTATGTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.09, G:0.06, T:0.21
Consensus pattern (17 bp):
AAAATCAAATGAATAAA
Found at i:36182159 original size:40 final size:40
Alignment explanation
Indices: 36182074--36182263 Score: 303
Period size: 40 Copynumber: 4.8 Consensus size: 40
36182064 CGATATAGCT
* * **
36182074 ACTCGCTCAAATGCCTTC-GGACATAGCCCGTTA-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
36182112 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
36182152 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
36182192 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
36182232 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
36182264 TTATCATCCG
Statistics
Matches: 140, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
38 16 0.11
39 11 0.08
40 113 0.81
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:36190099 original size:38 final size:38
Alignment explanation
Indices: 36190048--36190193 Score: 190
Period size: 39 Copynumber: 3.8 Consensus size: 38
36190038 GGATATAGCT
* *
36190048 ACTCGCTCAAATGCCTTCGGGACATAGCCCGTTATAGTA
1 ACTCGCACAAATGCCTTC-GGACTTAGCCCGTTATAGTA
*
36190087 ACTCGCAC-AATGCCTTCGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGACTTAGCCC-G-TTATAGTA
*
36190125 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-GATTAGTA
1 ACTCGCACAAATGCCTTC-GGACTTAGCCCGTTA-TAGTA
36190164 ACTCGCACAAATGCCTTCGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGACTTAGCCCG
36190194 GTATCATCCG
Statistics
Matches: 96, Mismatches: 5, Indels: 13
0.84 0.04 0.11
Matches are distributed among these distances:
37 10 0.10
38 34 0.35
39 41 0.43
40 11 0.11
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGGACTTAGCCCGTTATAGTA
Found at i:36190163 original size:77 final size:78
Alignment explanation
Indices: 36190048--36190194 Score: 244
Period size: 77 Copynumber: 1.9 Consensus size: 78
36190038 GGATATAGCT
* *
36190048 ACTCGCTCAAATGCCTTCGGGACATAGCCCGTTATAGTAACTCGCAC-AATGCCTTCGGACTTAG
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGATATAGTAACTCGCACAAATGCCTTCGGACTTAG
36190112 CCCGGATTTGGTA
66 CCCGGATTTGGTA
*
36190125 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGACTTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCC-GATATAGTAACTCGCACAAATGCCTTCGGACTTA
36190189 GCCCGG
65 GCCCGG
36190195 TATCATCCGA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
77 41 0.63
78 24 0.37
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (78 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGATATAGTAACTCGCACAAATGCCTTCGGACTTAG
CCCGGATTTGGTA
Found at i:36197302 original size:40 final size:40
Alignment explanation
Indices: 36197210--36197375 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
36197200 AAATTGAATG
* *
36197210 ATATCCGGGCTAAG-CCCGAAGACAATTATGCT-G-GAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-ATT
* **
36197248 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
36197288 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGATT
* *
36197328 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTGATT
36197368 ATATCCGG
1 ATATCCGG
36197376 TTATATTCCG
Statistics
Matches: 108, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
38 13 0.12
39 20 0.19
40 72 0.67
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:36200155 original size:32 final size:32
Alignment explanation
Indices: 36200108--36200172 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
36200098 AATTGTATTT
* *
36200108 TGAAATTGTGTATTTGAGATTTATTTGTTTAG
1 TGAAATCGTGCATTTGAGATTTATTTGTTTAG
36200140 TGAAATCGTGCATTTGAGATTTATTTGTTTAG
1 TGAAATCGTGCATTTGAGATTTATTTGTTTAG
36200172 T
1 T
36200173 TTACTTAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.22, T:0.51
Consensus pattern (32 bp):
TGAAATCGTGCATTTGAGATTTATTTGTTTAG
Found at i:36206341 original size:22 final size:19
Alignment explanation
Indices: 36206313--36206354 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
36206303 TGATAATCTT
36206313 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
36206335 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
36206354 T
1 T
36206355 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:36207141 original size:25 final size:24
Alignment explanation
Indices: 36207074--36207141 Score: 57
Period size: 25 Copynumber: 2.7 Consensus size: 24
36207064 TTCTCCTAAA
* *
36207074 TTTTAATTTTATTCAATTATTTAAT
1 TTTTAA-TTAATTAAATTATTTAAT
* *
36207099 TTTTCAATTTATTGAATTATTAATAAT
1 TTTT-AATTAATTAAATTATT--TAAT
36207126 TTTT-ATTAATTAAATT
1 TTTTAATTAATTAAATT
36207142 TTTGAGAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 27 0.73
26 2 0.05
27 8 0.22
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (24 bp):
TTTTAATTAATTAAATTATTTAAT
Found at i:36213681 original size:17 final size:18
Alignment explanation
Indices: 36213659--36213693 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36213649 GATATAATAC
*
36213659 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
36213676 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
36213694 CCGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:36213982 original size:22 final size:21
Alignment explanation
Indices: 36213947--36214077 Score: 59
Period size: 19 Copynumber: 6.7 Consensus size: 21
36213937 AAAAGGTATC
* *
36213947 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
36213968 TACAAAATCATATCTTTTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
36213991 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
36214010 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
**
36214028 T--GTATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
36214045 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
36214064 TGCATATCATATCT
1 TACAAATCATATCT
36214078 AAGATTGTAT
Statistics
Matches: 94, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
17 15 0.16
18 15 0.16
19 36 0.38
21 4 0.04
22 15 0.16
23 9 0.10
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:36214009 original size:19 final size:19
Alignment explanation
Indices: 36213985--36214092 Score: 186
Period size: 19 Copynumber: 5.8 Consensus size: 19
36213975 TCATATCTTT
36213985 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
36214004 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
36214022 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
36214039 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
36214058 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
*
36214077 TAAGATTGTATATCAT
1 TAAGATTGCATATCAT
36214093 TGAAGATTAT
Statistics
Matches: 85, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 53 0.62
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:36214595 original size:89 final size:89
Alignment explanation
Indices: 36214439--36214621 Score: 215
Period size: 89 Copynumber: 2.1 Consensus size: 89
36214429 GGAAGGCGAT
** * * * * * *
36214439 ATCTGCTATCTTTGATCTGCTCCCGTCTAATATAGAGACGCTAAATTTGTTATCTTCGATCTGCT
1 ATCTGCTATCTTCAATCTGCTCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCAATCTACT
**
36214504 CCCTGTCTAATACAAAGACGCCAA
66 CCCCATCTAATACAAAGACGCCAA
* *
36214528 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCAATTTAC
1 ATCTGCTATCTTCAATCTGCT-CCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCAATCTAC
** *
36214592 TCCCCATCTAATACCGAGATGCCAA
65 TCCCCATCTAATACAAAGACGCCAA
36214617 ATCTG
1 ATCTG
36214622 TCATCTTGGA
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
88 11 0.14
89 67 0.86
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.32
Consensus pattern (89 bp):
ATCTGCTATCTTCAATCTGCTCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCAATCTACT
CCCCATCTAATACAAAGACGCCAA
Found at i:36214605 original size:45 final size:45
Alignment explanation
Indices: 36214439--36214628 Score: 204
Period size: 45 Copynumber: 4.3 Consensus size: 45
36214429 GGAAGGCGAT
* ** * *
36214439 ATCTGCTATCTTTGATCTGCT-CCCGTCTAATATAGAGACGCTAA
1 ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
36214483 ATTTGTTATCTTCGATCTGCTCCCTGTCTAATACAAAGACGCCAA
1 ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
36214528 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * *
36214572 ATCTGTTATCTCCAATTTACTCCCCATCTAATACCGAGATGCCAA
1 ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
36214617 ATCTGTCATCTT
1 ATCTGTTATCTT
36214629 GGATCTGTTT
Statistics
Matches: 123, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
44 57 0.46
45 66 0.54
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (45 bp):
ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:36214780 original size:78 final size:78
Alignment explanation
Indices: 36214654--36214945 Score: 415
Period size: 78 Copynumber: 3.7 Consensus size: 78
36214644 TAAACACATG
* * *
36214654 AAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTATAATATAGAGATGCCAAATCATCTTGG
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
* *
36214719 ATCTACTTCAATG
66 ATCTGCTTCAATA
* * *
36214732 AAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTA
1 AAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
*
36214796 AATCTGCTTCAATA
65 GATCTGCTTCAATA
* * *
36214810 AAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCTGTCTAATACAGAGATACCAAATCATCTTGG
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
36214875 ATCTGCTTCAATA
66 ATCTGCTTCAATA
* * * **
36214888 AAGGTCAGATCTACTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATC
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
36214946 TGTTTCTTCG
Statistics
Matches: 189, Mismatches: 23, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
77 2 0.01
78 185 0.98
79 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (78 bp):
AAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
ATCTGCTTCAATA
Found at i:36215252 original size:217 final size:218
Alignment explanation
Indices: 36214888--36215495 Score: 950
Period size: 217 Copynumber: 2.8 Consensus size: 218
36214878 TGCTTCAATA
* *
36214888 AAGGTCAGATCTACTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCT
* * *
36214953 TCGATTTTTTCTCTGACAGTATAGAGATGCCAAATCATCTTAGATCTACTTCAGCGTAAACACGT
66 TCGA-TTTGTCTCT-ACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
*
36215018 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCAACGCAAGGGTGCCAAATCATCTTGG
129 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTGG
* *
36215083 ATCTACTTCGATGTGAAGACATTCG
194 ATCTACTTCGATGTGAAAACATCCG
* *
36215108 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTTTTTTT
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCT
* * ** *
36215173 TCGATTTGTCTAT-CAATACAGAGATGTTAAATCATCTTAGATCTGCTTTAGCGTAAACACGTGA
66 TCGATTTGTCTCTACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGA
* *
36215237 AAGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGAT
131 AAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTGGAT
36215302 CTACTTCGATGTGAAAACATCCG
196 CTACTTCGATGTGAAAACATCCG
* *
36215325 AAGGTTAGATCTGCTATGTCTTCTATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCT
* *
36215390 TCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCGTCTTAGATCTGCTTCAGCCTAAACACGT
66 TCGATTTG-TCTCT-ACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
* *
36215455 GAAAGCCAGATCCGCTATGTCTTCGATCTGCT-CTTCATCAA
129 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTT-ATCAA
36215496 ATATGGAGAT
Statistics
Matches: 352, Mismatches: 32, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
217 197 0.56
218 4 0.01
219 10 0.03
220 141 0.40
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (218 bp):
AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCT
TCGATTTGTCTCTACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGA
AAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCAACGCAAGGATGCCAAATCATCTTGGAT
CTACTTCGATGTGAAAACATCCG
Found at i:36215596 original size:45 final size:45
Alignment explanation
Indices: 36215543--36215708 Score: 239
Period size: 45 Copynumber: 3.7 Consensus size: 45
36215533 CTGACAGTAT
* *
36215543 AGAGATGCCAAATCTGTTATCTTCGATCTACTCCCCATCTAATAC
1 AGAGATGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAC
*
36215588 AGAGATGCCAAATCTGCTTA--TTCAATCTGCTCCCCGTCTAATAC
1 AGAGATGCCAAATCTG-TTATCTTCGATCTGCTCCCCGTCTAATAC
* *
36215632 AGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATAC
1 AGAGATGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAC
*
36215677 AGAGATGCCAAATCT-TTCATCTTGGATCTGCT
1 AGAGATGCCAAATCTGTT-ATCTTCGATCTGCT
36215709 TCGATGTAAA
Statistics
Matches: 108, Mismatches: 9, Indels: 8
0.86 0.07 0.06
Matches are distributed among these distances:
43 3 0.03
44 39 0.36
45 63 0.58
46 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (45 bp):
AGAGATGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAC
Found at i:36215796 original size:41 final size:41
Alignment explanation
Indices: 36215741--36215874 Score: 111
Period size: 41 Copynumber: 3.4 Consensus size: 41
36215731 ATCTGCTATG
*
36215741 TCTTTGATCTGCTTCCTGTCTAATACAGAGATGCCAAATCA
1 TCTTGGATCTGCTTCCTGTCTAATACAGAGATGCCAAATCA
* ** ** *
36215782 TCTTGGATCTGCTTCAATG---AAGGT-CAGATCTG-C-TGT-G
1 TCTTGGATCTGCTTC-CTGTCTAA--TACAGAGATGCCAAATCA
* *
36215819 TCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCA
1 TCTTGGATCTGCTTCCTGTCTAATACAGAGATGCCAAATCA
36215860 TCTTGGATCTGCTTC
1 TCTTGGATCTGCTTC
36215875 AATGAAGGTC
Statistics
Matches: 66, Mismatches: 17, Indels: 20
0.64 0.17 0.19
Matches are distributed among these distances:
36 2 0.03
37 14 0.21
38 7 0.11
39 6 0.09
40 7 0.11
41 28 0.42
42 2 0.03
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (41 bp):
TCTTGGATCTGCTTCCTGTCTAATACAGAGATGCCAAATCA
Found at i:36215849 original size:78 final size:78
Alignment explanation
Indices: 36215722--36215935 Score: 344
Period size: 78 Copynumber: 2.8 Consensus size: 78
36215712 ATGTAAACAC
* *
36215722 ATGAAGGTC--ATCTGCTATGTCTTTGATCTGCTTCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCT
36215785 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
36215798 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCT
36215863 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* **
36215876 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCC-GTCAAATATGGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTC-CCTGTCTAATACAGAGATGCCAAAT
36215936 TTGTTTCTTT
Statistics
Matches: 128, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
76 9 0.07
78 117 0.91
79 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:36215909 original size:37 final size:37
Alignment explanation
Indices: 36215782--36215909 Score: 91
Period size: 37 Copynumber: 3.4 Consensus size: 37
36215772 TGCCAAATCA
* *
36215782 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
** ** * *
36215819 TCTTCGATCTGC-TCCCTGTCTAA--TACAGAGATGCCAAATCA
1 TCTTCGATCTGCTTCAATG---AAGGT-CAGATCTG-C-TAT-G
*
36215860 TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATG
1 TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
36215897 TCTTCGATCTGCT
1 TCTTCGATCTGCT
36215910 CTCCGTCAAA
Statistics
Matches: 65, Mismatches: 16, Indels: 20
0.64 0.16 0.20
Matches are distributed among these distances:
36 4 0.06
37 24 0.37
38 8 0.12
39 6 0.09
40 7 0.11
41 12 0.18
42 4 0.06
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (37 bp):
TCTTCGATCTGCTTCAATGAAGGTCAGATCTGCTATG
Found at i:36216299 original size:180 final size:177
Alignment explanation
Indices: 36216015--36216535 Score: 518
Period size: 180 Copynumber: 3.0 Consensus size: 177
36216005 ACGTGAAAGC
* * *** *
36216015 CAAATCTGCTATGTCTTCGATCTGCTCCTTGTC-AATGTAAG-GATGCCAAATCATCTTGGATCT
1 CAAATCTGTTATCTCTTCGATCTGCTCCCCATCTAAT-AAAGAGATGCCAAATCATCTTGGATCT
* *
36216078 ACTTCGATGTGAAGACATC-TGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATA
65 GCTTCGATGT-AA-ACA-CATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATA
36216142 TGGAGATGCCAAATCTATTTCTTCGATTTGCTCTCTGACAATACAGAGATGT
127 TGGAGATGCCAAATCTATTTCTTCGATTTG-TCTCTGACAATACAGAGATGT
* * *
36216194 TAAATCTGTTATCTC-T-GATTTGCTCCGCATCTAATAAAGAGATGCCAAATTTGTCATCTTGGA
1 CAAATCTGTTATCTCTTCGATCTGCTCCCCATCTAATAAAGAGATGCCAAA----TCATCTTGGA
* *
36216257 TCTGCTTCGATGTAAACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATA
62 TCTGCTTCGATGTAAACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATA
** * * *
36216322 CAGAGATGCCAAATC-A--TCTTGGATCTG-CT-T--CAAT---GA-AGGT
127 TGGAGATGCCAAATCTATTTCTTCGATTTGTCTCTGACAATACAGAGATGT
* * * *
36216362 CCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTG
1 CAAATCTGTTATCTCTTCGATCTGCTCCCCATCTAATAAAGAGATGCCAAATCATCTTGGATCTG
* *
36216427 ---C--T-T---CA-ATAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAATATGGA
66 CTTCGATGTAAACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGA
* * * *
36216482 GATGCCAAATCTGTTTCTTCGATTTGTTCTCTGATAGTACAGAGATGC
131 GATGCCAAATCTATTTCTTCGATTTG-TCTCTGACAATACAGAGATGT
36216530 CAAATC
1 CAAATC
36216536 ATCTTAGAGC
Statistics
Matches: 283, Mismatches: 38, Indels: 53
0.76 0.10 0.14
Matches are distributed among these distances:
156 55 0.19
157 2 0.01
159 9 0.03
160 1 0.00
161 3 0.01
162 1 0.00
163 1 0.00
164 2 0.01
166 14 0.05
167 2 0.01
168 22 0.08
169 3 0.01
170 29 0.10
172 4 0.01
174 1 0.00
175 2 0.01
177 23 0.08
178 13 0.05
179 14 0.05
180 58 0.20
181 2 0.01
182 22 0.08
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (177 bp):
CAAATCTGTTATCTCTTCGATCTGCTCCCCATCTAATAAAGAGATGCCAAATCATCTTGGATCTG
CTTCGATGTAAACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGA
GATGCCAAATCTATTTCTTCGATTTGTCTCTGACAATACAGAGATGT
Found at i:36216405 original size:78 final size:78
Alignment explanation
Indices: 36216276--36216492 Score: 357
Period size: 78 Copynumber: 2.8 Consensus size: 78
36216266 ATGTAAACAC
36216276 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
36216341 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
36216354 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
36216418 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * **
36216432 ATAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGT-TGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCT-AATACAGAGATGCCAAATC
36216493 TGTTTCTTCG
Statistics
Matches: 130, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
77 3 0.02
78 125 0.96
79 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.31
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:36216489 original size:556 final size:552
Alignment explanation
Indices: 36215325--36216877 Score: 2133
Period size: 556 Copynumber: 2.8 Consensus size: 552
36215315 AAAACATCCG
* *
36215325 AAGGTTAGATCTGCTATGTCTTCTATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
* *
36215390 TCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCGTCTTAGATCTGCTTCAGCCTAAACACGT
66 TCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
* * * * * *
36215455 GAAAGCCAGATCCGCTATGTCTTCGATCTGCT-CTTCATCAAATATGGAGATGCCAATTC-TTTT
131 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTT-ATCAAGTA-AG-GATGCCAAATCATCTT
*** * * * * ** * * ** * * *
36215518 TCTTC-AATTTGTTCT-CTGACAGTATAGAGATGCCAAATCTG-T-TATCTTCGATCTACTCCCC
193 GGATCTACTTCGATGTGAAGACA-TCT-GA-AGGTTAGATCTGCTATGTCTTCGATCTACTCTCC
* * ** * * * * * * * **
36215579 ATCTAATACAGAGATGCCAAATCTGCTTATTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAA
255 GTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTTGCTCTCTGAC-AATACAGAGATGTTAAA
*
36215644 TCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTT-TCATCTTGGATCTGC
319 TCTGTTATCTCTGATTTGCT-CCC-TCTAATA-AGAGATGCCAAAT-TTGTCATCTTGGATCTGC
* * *
36215708 TTCGATGTAAACACATGAAGGTC--ATCTGCTATGTCTTTGATCTGCTTCCTGTCTAATACAGAG
380 TTCGATGTAAACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAG
* *
36215771 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCT
445 ATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCC
*
36215836 GTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATG
510 GTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATA
* *
36215879 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
* * * * *
36215944 TTGATTTGTTCTCTGACAGTATAGAGATGCTAAATCATCCTAGATCTGCTTCAACGTAAACACGT
66 TCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
*
36216009 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAATGTAAGGATGCCAAATCATCTTGG
131 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCAA-GTAAGGATGCCAAATCATCTTGG
* *
36216074 ATCTACTTCGATGTGAAGACATCTGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGA
195 ATCTACTTCGATGTGAAGACATCTGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCAA
*
36216139 ATATGGAGATGCCAAATCTATTTCTTCGATTTGCTCTCTGACAATACAGAGATGTTAAATCTGTT
260 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGCTCTCTGACAATACAGAGATGTTAAATCTGTT
36216204 ATCTCTGATTTGCTCCGCATCTAATAAAGAGATGCCAAATTTGTCATCTTGGATCTGCTTCGATG
325 ATCTCTGATTTGCTCC-C-TCTAAT-AAGAGATGCCAAATTTGTCATCTTGGATCTGCTTCGATG
36216269 TAAACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
387 TAAACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
36216334 ATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAA
452 ATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAA
36216398 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATA
516 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAATA
*
36216435 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
* *
36216500 TCGATTTGTTCTCTGATAGTACAGAGATGCCAAATCATCTTAGAGCTGCTTCAGCGTAAACACGT
66 TCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
* * * *
36216565 GAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTATCAGCGCAAGGATGCCGAATCATCTTGG
131 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCA-AGTAAGGATGCCAAATCATCTTGG
36216630 ATCTACTTCGATGTGAAGACATCTGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCAA
195 ATCTACTTCGATGTGAAGACATCTGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCAA
* ** *
36216695 ATATGGAGATGTCAAATCTGTTTCTTCGATTTATTCTCTGACAATACAGAGATGTTAAATCTATT
260 ATATGGAGATGCCAAATCTGTTTCTTCGATTTGCTCTCTGACAATACAGAGATGTTAAATCTGTT
*
36216760 ATCTCTGATTTGCT--C-C---------ATGCCAAATCTGTCATCTTGGATCTGCTTCGATGTAA
325 ATCTCTGATTTGCTCCCTCTAATAAGAGATGCCAAATTTGTCATCTTGGATCTGCTTCGATGTAA
* * **
36216813 ACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATC
390 ACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
36216878 TGTTTCTTCG
Statistics
Matches: 900, Mismatches: 85, Indels: 41
0.88 0.08 0.04
Matches are distributed among these distances:
541 97 0.11
551 1 0.00
553 23 0.03
554 254 0.28
555 65 0.07
556 458 0.51
557 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (552 bp):
AAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
TCGATTTGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTATCAAGTAAGGATGCCAAATCATCTTGGA
TCTACTTCGATGTGAAGACATCTGAAGGTTAGATCTGCTATGTCTTCGATCTACTCTCCGTCAAA
TATGGAGATGCCAAATCTGTTTCTTCGATTTGCTCTCTGACAATACAGAGATGTTAAATCTGTTA
TCTCTGATTTGCTCCCTCTAATAAGAGATGCCAAATTTGTCATCTTGGATCTGCTTCGATGTAAA
CACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCA
TCTTGGATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAG
AGATGCCAAATCATCTTGGATCTGCTTCAATA
Found at i:36217168 original size:133 final size:133
Alignment explanation
Indices: 36217003--36217283 Score: 544
Period size: 133 Copynumber: 2.1 Consensus size: 133
36216993 CAAGGATGCC
* *
36217003 AAATCATCTTGGATCTACTTTGATGTGAAGACATCCGAAGGTTAGATCTGCTATGTCTTCGATCT
1 AAATCATCTTGGATCTACTTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATATCTTCGATCT
36217068 GCTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAAAT
66 GCTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAAAT
36217133 GTT
131 GTT
36217136 AAATCATCTTGGATCTACTTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATATCTTCGATCT
1 AAATCATCTTGGATCTACTTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATATCTTCGATCT
36217201 GCTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAAAT
66 GCTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAAAT
36217266 GTT
131 GTT
36217269 AAATCATCTTGGATC
1 AAATCATCTTGGATC
36217284 CGCTTCAGCG
Statistics
Matches: 146, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 146 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (133 bp):
AAATCATCTTGGATCTACTTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATATCTTCGATCT
GCTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACAGAAAT
GTT
Found at i:36224931 original size:13 final size:13
Alignment explanation
Indices: 36224913--36224937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36224903 AAAAGATCAT
36224913 AGTTTTCAAATTG
1 AGTTTTCAAATTG
36224926 AGTTTTCAAATT
1 AGTTTTCAAATT
36224938 TCGATAAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (13 bp):
AGTTTTCAAATTG
Found at i:36225675 original size:17 final size:17
Alignment explanation
Indices: 36225653--36225686 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
36225643 GATATGATAC
36225653 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
36225670 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
36225687 CGAGAAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:36225975 original size:22 final size:21
Alignment explanation
Indices: 36225940--36226015 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
36225930 AAAAGGTAAC
* *
36225940 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
36225961 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
36225984 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
36226003 TGC-AATCATATCT
1 TACAAATCATATCT
36226016 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:36226000 original size:19 final size:19
Alignment explanation
Indices: 36225976--36226085 Score: 181
Period size: 19 Copynumber: 5.9 Consensus size: 19
36225966 AATCATATCT
36225976 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
36225995 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
36226013 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
36226030 TCTATGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
36226049 TCTAAAATTGCATATCATA
1 TCTAAGATTGCATATCATA
36226068 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
36226086 TGAAGATTAT
Statistics
Matches: 84, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
17 15 0.18
18 16 0.19
19 53 0.63
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:36226607 original size:139 final size:139
Alignment explanation
Indices: 36226382--36226685 Score: 506
Period size: 139 Copynumber: 2.2 Consensus size: 139
36226372 TTAATATAAA
* *
36226382 AAAAATATTAATTGTATATATTTTATCGAATTTATTAATATAAACAGTTATATTAATTAATTTCG
1 AAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAACAGTTATATTAATTAATTTCG
*
36226447 ATCAAAATATAAAAGACATGAAAATTAAAATTCTTTTGGAAAGAATATCATTAATATATGAATTT
66 ATCAAAATATAAAAGACATGAAAATTAAAATTCTTTTGGAAAGAATATAATTAATATATGAATTT
36226512 AATTCATAC
131 AATTCATAC
*
36226521 AAAAATATTCATTGTATATATTTTACCAAATTTATTAATATAAACAGTTATATTAA-TACATTTC
1 AAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAACAGTTATATTAATTA-ATTTC
*
36226585 -AGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAAT
65 GA-TCAAAATATAAAAGACATGAAAATTAAAATTCTTTTGGAAAGAATATAATTAATATATGAAT
*
36226649 TTGATTCATAC
129 TTAATTCATAC
*
36226660 -AAAATATTAATTGTATATAATTTACC
1 AAAAATATTAATTGTATATATTTTACC
36226686 GAGAAATTAA
Statistics
Matches: 155, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
138 27 0.17
139 128 0.83
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (139 bp):
AAAAATATTAATTGTATATATTTTACCAAATTTATTAATATAAACAGTTATATTAATTAATTTCG
ATCAAAATATAAAAGACATGAAAATTAAAATTCTTTTGGAAAGAATATAATTAATATATGAATTT
AATTCATAC
Found at i:36226693 original size:82 final size:82
Alignment explanation
Indices: 36226607--36226766 Score: 293
Period size: 82 Copynumber: 2.0 Consensus size: 82
36226597 AAAGACATGA
36226607 AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATT
36226672 GTATATAATTTACCGAG
66 GTATATAATTTACCGAG
* *
36226689 AAATTAATATTCTTTTGGAAAGAATATAATTAATATTTGAATTTGATTCATACAAAATATTGATT
1 AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATT
*
36226754 GTATATATTTTAC
66 GTATATAATTTAC
36226767 TGAATGTATT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 75 1.00
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.42
Consensus pattern (82 bp):
AAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATT
GTATATAATTTACCGAG
Found at i:36229780 original size:23 final size:23
Alignment explanation
Indices: 36229750--36229814 Score: 121
Period size: 23 Copynumber: 2.8 Consensus size: 23
36229740 TATCACAAGT
*
36229750 GAATTAATTCAAAAATGGATTTA
1 GAATTAATTCATAAATGGATTTA
36229773 GAATTAATTCATAAATGGATTTA
1 GAATTAATTCATAAATGGATTTA
36229796 GAATTAATTCATAAATGGA
1 GAATTAATTCATAAATGGA
36229815 GTCCAGTCTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.35
Consensus pattern (23 bp):
GAATTAATTCATAAATGGATTTA
Found at i:36236000 original size:26 final size:26
Alignment explanation
Indices: 36235942--36236015 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
36235932 AAGCAAGCAC
* * *
36235942 TAACGGGTAGCTCACGAAGAG-CTTT
1 TAACGGGAAGCTCACGAAGAGCCATA
36235967 TAATCGGGAAGCTCACGAAGAGCCATA
1 TAA-CGGGAAGCTCACGAAGAGCCATA
*
36235994 TAACGGGACA-CTCACAAAGAGC
1 TAACGGGA-AGCTCACGAAGAGC
36236016 TGCGGTGCGC
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 3 0.07
26 33 0.79
27 6 0.14
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.16
Consensus pattern (26 bp):
TAACGGGAAGCTCACGAAGAGCCATA
Found at i:36243065 original size:2 final size:2
Alignment explanation
Indices: 36243060--36243084 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36243050 TATATATATA
36243060 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
36243085 TACGCATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:36244148 original size:26 final size:27
Alignment explanation
Indices: 36244115--36244189 Score: 77
Period size: 26 Copynumber: 2.9 Consensus size: 27
36244105 AAGCGAGCAC
*
36244115 TAAT-GGGAAGCTCATAGAGAGCT-TT
1 TAATCGGGAAGCTCATAGAGAGCTATA
*
36244140 TAATCGGGAAGCTCAT-GAAAAGCTATA
1 TAATCGGGAAGCTCATAG-AGAGCTATA
* *
36244167 TAA-CGGGATGCTCATAAAGAGCT
1 TAATCGGGAAGCTCATAGAGAGCT
36244190 GTGGTGCACC
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
25 5 0.12
26 32 0.78
27 4 0.10
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (27 bp):
TAATCGGGAAGCTCATAGAGAGCTATA
Found at i:36244225 original size:242 final size:242
Alignment explanation
Indices: 36243800--36244268 Score: 911
Period size: 242 Copynumber: 1.9 Consensus size: 242
36243790 AAAGAGCCTA
*
36243800 TAACGGGTAGCTCCAGAGAGCATTTAATCAAGAAACACCGACTAGCACTTTAATAGGAAGTTCAA
1 TAACGGGTAGCTCCAGAGAGCATTTAATCAAGAAACACCGAATAGCACTTTAATAGGAAGTTCAA
36243865 GCGAGCACTAACGGGAAGCTCATAGAGAGCTTTTAATCGGGAAGCTCATGAAAAGCCATATAACG
66 GCGAGCACTAACGGGAAGCTCATAGAGAGCTTTTAATCGGGAAGCTCATGAAAAGCCATATAACG
36243930 GGATGCTCATAAAGAGCTGTGGTGCACCCACAACACATGTAGGGTCACAACCAATCGGGATGCTC
131 GGATGCTCATAAAGAGCTGTGGTGCACCCACAACACATGTAGGGTCACAACCAATCGGGATGCTC
36243995 CGAAGAGCATTTAACGAAAATCTCGTAAGAACAGTTCAAGCGAGCAC
196 CGAAGAGCATTTAACGAAAATCTCGTAAGAACAGTTCAAGCGAGCAC
36244042 TAACGGGTAGCTCCAGAGAGCATTTAATCAAGAAACACCGAATAGCACTTTAATAGGAAGTTCAA
1 TAACGGGTAGCTCCAGAGAGCATTTAATCAAGAAACACCGAATAGCACTTTAATAGGAAGTTCAA
* *
36244107 GCGAGCACTAATGGGAAGCTCATAGAGAGCTTTTAATCGGGAAGCTCATGAAAAGCTATATAACG
66 GCGAGCACTAACGGGAAGCTCATAGAGAGCTTTTAATCGGGAAGCTCATGAAAAGCCATATAACG
36244172 GGATGCTCATAAAGAGCTGTGGTGCACCCACAACACATGTAGGGTCACAACCAATCGGGATGCTC
131 GGATGCTCATAAAGAGCTGTGGTGCACCCACAACACATGTAGGGTCACAACCAATCGGGATGCTC
36244237 CGAAGAGCATTTAACGAAAATCTCGTAAGAAC
196 CGAAGAGCATTTAACGAAAATCTCGTAAGAAC
36244269 TATATACAGG
Statistics
Matches: 224, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
242 224 1.00
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (242 bp):
TAACGGGTAGCTCCAGAGAGCATTTAATCAAGAAACACCGAATAGCACTTTAATAGGAAGTTCAA
GCGAGCACTAACGGGAAGCTCATAGAGAGCTTTTAATCGGGAAGCTCATGAAAAGCCATATAACG
GGATGCTCATAAAGAGCTGTGGTGCACCCACAACACATGTAGGGTCACAACCAATCGGGATGCTC
CGAAGAGCATTTAACGAAAATCTCGTAAGAACAGTTCAAGCGAGCAC
Found at i:36257134 original size:14 final size:14
Alignment explanation
Indices: 36257117--36257143 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36257107 TTAAGTAATA
36257117 TATCACTTAAATTT
1 TATCACTTAAATTT
36257131 TATCACTTAAATT
1 TATCACTTAAATT
36257144 CAGTACTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (14 bp):
TATCACTTAAATTT
Found at i:36259832 original size:44 final size:41
Alignment explanation
Indices: 36259756--36259836 Score: 117
Period size: 44 Copynumber: 1.9 Consensus size: 41
36259746 ATCAGTATAC
*
36259756 GACACATAAGTGCCTGAAACGACACATGAAGTGCCTGATAT
1 GACACATAAGTGCCTGAAACGACACATAAAGTGCCTGATAT
*
36259797 GACACATGAGGTGCCTGAAATACGACACATAAAGTGCCTG
1 GACACAT-AAGTGCCTG-AA-ACGACACATAAAGTGCCTG
36259837 CTGGGAAGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
41 7 0.20
42 8 0.23
43 2 0.06
44 18 0.51
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (41 bp):
GACACATAAGTGCCTGAAACGACACATAAAGTGCCTGATAT
Found at i:36259833 original size:23 final size:22
Alignment explanation
Indices: 36259752--36259836 Score: 113
Period size: 21 Copynumber: 4.0 Consensus size: 22
36259742 CCTGATCAGT
36259752 ATACGACACAT-AAGTGCCTGA
1 ATACGACACATGAAGTGCCTGA
36259773 A-ACGACACATGAAGTGCCTG-
1 ATACGACACATGAAGTGCCTGA
* *
36259793 ATATGACACATGAGGTGCCTGAA
1 ATACGACACATGAAGTGCCTG-A
*
36259816 ATACGACACATAAAGTGCCTG
1 ATACGACACATGAAGTGCCTG
36259837 CTGGGAAGAG
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
20 10 0.18
21 27 0.49
23 18 0.33
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (22 bp):
ATACGACACATGAAGTGCCTGA
Found at i:36266986 original size:155 final size:155
Alignment explanation
Indices: 36266713--36267016 Score: 482
Period size: 155 Copynumber: 2.0 Consensus size: 155
36266703 TACAGATGGC
* * *
36266713 ACCTTACGAGGCCCTGTATGGTCGTAAGTGTCGCACTCCCTTGTGTTAGACTGAGTTGGGTGAGC
1 ACCTTACGAGGCCCTGTATGGTCGTAAATGTAGCACTCCCTTGTGCTAGACTGAGTTGGGTGAGC
* * *
36266778 AATGTATTCTGGGTTCGGAGTTGGTATCAGAGACTAAGGATAAAGTCTGCTTGATTCGAGATCAA
66 AACGTATTCTGGGTTCAGAGTTGGTATCAGAGACTAAGGATAAAGCCTGCTTGATTCGAGATCAA
*
36266843 CTGAAAGCTGCTTCTGACAGATAAA
131 CTGAAAGCTACTTCTGACAGATAAA
*
36266868 ACCTTACGAGGCCCTGTATGGTCGTAAATGTAGCACTCTCTTGTGCTAGACTGAGTTGGGTGAGC
1 ACCTTACGAGGCCCTGTATGGTCGTAAATGTAGCACTCCCTTGTGCTAGACTGAGTTGGGTGAGC
* * * ** *
36266933 GACGTGTTCTGGGTTTAGAGTTGGTATTGGAGACTGAGGATAAAGCCTGCTTGATTCGAGATCAA
66 AACGTATTCTGGGTTCAGAGTTGGTATCAGAGACTAAGGATAAAGCCTGCTTGATTCGAGATCAA
36266998 CTGAAAGCTACTTCTGACA
131 CTGAAAGCTACTTCTGACA
36267017 AATAGAAGTC
Statistics
Matches: 135, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
155 135 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (155 bp):
ACCTTACGAGGCCCTGTATGGTCGTAAATGTAGCACTCCCTTGTGCTAGACTGAGTTGGGTGAGC
AACGTATTCTGGGTTCAGAGTTGGTATCAGAGACTAAGGATAAAGCCTGCTTGATTCGAGATCAA
CTGAAAGCTACTTCTGACAGATAAA
Found at i:36270613 original size:29 final size:31
Alignment explanation
Indices: 36270536--36270615 Score: 137
Period size: 31 Copynumber: 2.6 Consensus size: 31
36270526 CCTTTTCATA
*
36270536 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
36270567 TTTCATATTTCATATTACTGGGCCGAAGCC-
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
36270597 TTT-ATATTTCATATTACTG
1 TTTCATATTTCATATTACTG
36270616 TAAACGGTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
29 16 0.33
30 3 0.06
31 29 0.60
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:36270855 original size:24 final size:24
Alignment explanation
Indices: 36270803--36270922 Score: 179
Period size: 24 Copynumber: 5.0 Consensus size: 24
36270793 GCTTTATCAT
* *
36270803 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
36270828 ATAACTGGGGCAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
36270852 ATAACTGGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
36270876 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
36270900 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
36270923 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 76 0.86
25 12 0.14
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:36270998 original size:20 final size:20
Alignment explanation
Indices: 36270973--36271032 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
36270963 TATGATTACC
36270973 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
36270993 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
36271013 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
36271033 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:36271102 original size:25 final size:25
Alignment explanation
Indices: 36271074--36271121 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36271064 ATACATAAAC
* * *
36271074 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
36271099 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
36271122 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:36272304 original size:27 final size:27
Alignment explanation
Indices: 36272274--36272338 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
36272264 GGGCATATTC
*
36272274 GTCATTTTACCATACAGGGG-TATCACG
1 GTCACTTTACCATACAGGGGCT-TCACG
* * *
36272301 GTCACTTCACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTCACG
36272328 GTCACTTTACC
1 GTCACTTTACC
36272339 TAATAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTCACG
Found at i:36272565 original size:27 final size:27
Alignment explanation
Indices: 36272397--36272648 Score: 116
Period size: 27 Copynumber: 9.3 Consensus size: 27
36272387 TCTACAAACT
* *
36272397 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*
36272424 AATGGTATTTCTA-TAATTTT-TAGAAAGTC
1 AAGGGTATTT-TAGTAATTTTGT--AAA-TC
* *
36272453 AAGGGTATTTCT-GTAACTTTGTAAATT
1 AAGGGTATTT-TAGTAATTTTGTAAATC
* * ** *
36272480 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTGTAAATC
* * *** *
36272507 GAGGGT-TTTTCGGTAATTTCACAAACC
1 AAGGGTATTTT-AGTAATTTTGTAAATC
36272534 AAGGGTATTTTAGTAATTTTGTAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
* **** * *
36272561 GAGGGTAAAACAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
**** * *
36272588 AAGGGTAAAACAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*** * *
36272615 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
36272642 AAGGGTA
1 AAGGGTA
36272649 AAACAGTAAT
Statistics
Matches: 186, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
26 6 0.03
27 150 0.81
28 11 0.06
29 18 0.10
30 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.36
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTGTAAATC
Found at i:36272577 original size:54 final size:54
Alignment explanation
Indices: 36272545--36272783 Score: 277
Period size: 54 Copynumber: 4.4 Consensus size: 54
36272535 AGGGTATTTT
*
36272545 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAAC
* * *
36272599 AGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAAC
* * * * * *
36272653 AGTAATTCAGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGATAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAAC
* * * * *
36272707 -GATAATTATGTAAATC-AGGGGTAAAAC-GATAATTATGTAAATTAGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAACAG-TAATTCTATAAATCAAGGGTAAAAC
* *
36272761 GGTAATTTTGTAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
36272784 CTTTGGTAAT
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
53 3 0.02
54 153 0.97
55 2 0.01
ACGTcount: A:0.43, C:0.08, G:0.21, T:0.28
Consensus pattern (54 bp):
AGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAAC
Found at i:36272593 original size:81 final size:81
Alignment explanation
Indices: 36272519--36272688 Score: 218
Period size: 81 Copynumber: 2.1 Consensus size: 81
36272509 GGGTTTTTCG
*** * * *
36272519 GTAATT-TCACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTA-
1 GTAATTCT-ACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTC-AG
36272582 TAAATCAAGGGTAAAACA
64 TAAATCAAGGGTAAAACA
* *
36272600 GTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCAGTA
1 GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCAGTA
* *
36272665 AATCGAGGGTAAAACG
66 AATCAAGGGTAAAACA
36272681 GTAATTCT
1 GTAATTCT
36272689 GTAAGTCGAG
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 1 0.01
81 75 0.97
82 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.18, T:0.29
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCAGTA
AATCAAGGGTAAAACA
Found at i:36272649 original size:27 final size:27
Alignment explanation
Indices: 36272545--36272783 Score: 241
Period size: 27 Copynumber: 8.9 Consensus size: 27
36272535 AGGGTATTTT
* * *
36272545 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
36272572 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
*
36272599 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTATAAATCAAGGGTAAAAC
36272626 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
*
36272653 AGTAATTC-AGTAAATCGAGGGTAAAAC
1 AGTAATTCTA-TAAATCAAGGGTAAAAC
* * * * *
36272680 GGTAATTCTGTAAGTCGAGGATAAAAC
1 AGTAATTCTATAAATCAAGGGTAAAAC
* * *
36272707 -GATAATTATGTAAATCAGGGGTAAAAC
1 AG-TAATTCTATAAATCAAGGGTAAAAC
* * * *
36272734 -GATAATTATGTAAATTAGGGGTAAAAC
1 AG-TAATTCTATAAATCAAGGGTAAAAC
* * * *
36272761 GGTAATTTTGTAAATCGAGGGTA
1 AGTAATTCTATAAATCAAGGGTA
36272784 CTTTGGTAAT
Statistics
Matches: 188, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.01
27 185 0.98
28 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.21, T:0.28
Consensus pattern (27 bp):
AGTAATTCTATAAATCAAGGGTAAAAC
Found at i:36272705 original size:81 final size:81
Alignment explanation
Indices: 36272544--36272780 Score: 275
Period size: 81 Copynumber: 2.9 Consensus size: 81
36272534 AAGGGTATTT
* * *
36272544 TAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTA-TAAATCAAGGGTAAAACAGTAATTCT
1 TAGTAATTATGTAAATCAAGGGTAAAACAGTAATTC-AGTAAATCAAGGGTAAAACGGTAATTCT
* * *
36272608 ATAAATCAAGGGTAAAA
65 GTAAATCGAGGATAAAA
* * *
36272625 TAGTAATTCTATAAATCAAGGGTAAAACAGTAATTCAGTAAATCGAGGGTAAAACGGTAATTCTG
1 TAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCAGTAAATCAAGGGTAAAACGGTAATTCTG
*
36272690 TAAGTCGAGGATAAAA
66 TAAATCGAGGATAAAA
* * * *
36272706 -CGATAATTATGTAAATCAGGGGTAAAAC-GATAATT-ATGTAAATTAGGGGTAAAACGGTAATT
1 TAG-TAATTATGTAAATCAAGGGTAAAACAG-TAATTCA-GTAAATCAAGGGTAAAACGGTAATT
*
36272768 TTGTAAATCGAGG
63 CTGTAAATCGAGG
36272781 GTACTTTGGT
Statistics
Matches: 134, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
80 4 0.03
81 130 0.97
ACGTcount: A:0.43, C:0.08, G:0.21, T:0.28
Consensus pattern (81 bp):
TAGTAATTATGTAAATCAAGGGTAAAACAGTAATTCAGTAAATCAAGGGTAAAACGGTAATTCTG
TAAATCGAGGATAAAA
Found at i:36272791 original size:27 final size:27
Alignment explanation
Indices: 36272760--36272878 Score: 134
Period size: 27 Copynumber: 4.4 Consensus size: 27
36272750 AGGGGTAAAA
**
36272760 CGGTAATTTTGTAAATCGAGGGTACTTT
1 CGGTAATTTTACAAATCGAGGGTA-TTT
* *
36272788 -GGTAATTTTACAAGTCGAAGGTATTT
1 CGGTAATTTTACAAATCGAGGGTATTT
*
36272814 CGGTAAATTTACAAATCGAGGGTATTT
1 CGGTAATTTTACAAATCGAGGGTATTT
* * *
36272841 CAGTATTTTTACAAA-CTAAGGGTATTT
1 CGGTAATTTTACAAATC-GAGGGTATTT
36272868 CGGTAATTTTA
1 CGGTAATTTTA
36272879 GTAAACTAAA
Statistics
Matches: 76, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
26 4 0.05
27 72 0.95
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
CGGTAATTTTACAAATCGAGGGTATTT
Found at i:36272892 original size:27 final size:27
Alignment explanation
Indices: 36272789--36272893 Score: 72
Period size: 27 Copynumber: 3.9 Consensus size: 27
36272779 GGGTACTTTG
* * *
36272789 GTAATTTTACAAGTCGAAG-GTATTTCG
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
36272816 GTAAATTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
36272843 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
36272870 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
36272894 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.84
28 8 0.13
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:36275054 original size:14 final size:15
Alignment explanation
Indices: 36275030--36275058 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36275020 GAATGGCTTC
36275030 TGCTATTCTTTCTTT
1 TGCTATTCTTTCTTT
36275045 TGCT-TTCTTTCTTT
1 TGCTATTCTTTCTTT
36275059 ATTTCATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.03, C:0.21, G:0.07, T:0.69
Consensus pattern (15 bp):
TGCTATTCTTTCTTT
Found at i:36276977 original size:11 final size:12
Alignment explanation
Indices: 36276961--36276989 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
36276951 TATTAAGTAG
36276961 AAAAATA-TAAT
1 AAAAATATTAAT
36276972 AAAAATATTAAT
1 AAAAATATTAAT
36276984 AAAAAT
1 AAAAAT
36276990 TAAGATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
AAAAATATTAAT
Found at i:36277157 original size:32 final size:32
Alignment explanation
Indices: 36277117--36277180 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
36277107 TATTGCTTAG
*
36277117 TTAGTTGATATTATTATTGCAACACCCTTAAC
1 TTAGTTGATATTATTATTACAACACCCTTAAC
*
36277149 TTAGTTGATATTATTATTATAACACCCTTAAC
1 TTAGTTGATATTATTATTACAACACCCTTAAC
36277181 CCGTCTCCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (32 bp):
TTAGTTGATATTATTATTACAACACCCTTAAC
Found at i:36286432 original size:40 final size:40
Alignment explanation
Indices: 36286387--36286554 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
36286377 CGGAATACAA
36286387 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
36286427 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
36286467 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
36286507 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
36286547 CCGGATAT
1 CCGGATAT
36286555 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:36294478 original size:40 final size:40
Alignment explanation
Indices: 36294433--36294600 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
36294423 CGGAATACAA
36294433 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
36294473 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
36294513 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
36294553 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
36294593 CCGGATAT
1 CCGGATAT
36294601 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:36296350 original size:38 final size:38
Alignment explanation
Indices: 36296308--36296527 Score: 199
Period size: 38 Copynumber: 5.3 Consensus size: 38
36296298 GGGCTGTCAC
36296308 AGCACCACGTTATATGTTTAACCGTGGTATATCCACTT
1 AGCACCACGTTATATGTTTAACCGTGGTATATCCACTT
*
36296346 AGCACCACGTTAATGAATCACTATATGTAACCGTGGCT-TATCCACTT
1 AGCACCACG-T--T--AT-A-TGT-T-TAACCGTGG-TATATCCACTT
* * *
36296393 AGTACCACGTTACATGTTTAACTGTGGTATATCCACTT
1 AGCACCACGTTATATGTTTAACCGTGGTATATCCACTT
* * *
36296431 GGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCACTT
1 AGCACCACG-T--T--AT--ATGT-T-TAACCGTGGTATATCCACTT
36296478 AGCACCACGTTATATGTTTAACCGTGGTATATCCACTT
1 AGCACCACGTTATATGTTTAACCGTGGTATATCCACTT
36296516 AGCACCACGTTA
1 AGCACCACGTTA
36296528 ATGAATCAAT
Statistics
Matches: 148, Mismatches: 14, Indels: 40
0.73 0.07 0.20
Matches are distributed among these distances:
37 1 0.01
38 64 0.43
39 4 0.03
40 5 0.03
41 3 0.02
42 3 0.02
43 3 0.02
44 3 0.02
45 5 0.03
46 4 0.03
47 52 0.35
48 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (38 bp):
AGCACCACGTTATATGTTTAACCGTGGTATATCCACTT
Found at i:36296389 original size:47 final size:47
Alignment explanation
Indices: 36296326--36296621 Score: 315
Period size: 47 Copynumber: 6.7 Consensus size: 47
36296316 GTTATATGTT
*
36296326 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCACTATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
36296373 TAACCGTGGCT-TATCCACTTAGTACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGG-TATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
36296411 TAACTGTGGTATATCCACTTGGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
36296458 TAACCGTGGCATATCCACTTAGCACCACG-T--T--AT--ATGT-T-
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
36296496 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
36296543 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* * * *
36296591 TGATCATGGTATATCCATTTAGCACCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
36296622 TTCCATTCCG
Statistics
Matches: 207, Mismatches: 21, Indels: 41
0.77 0.08 0.15
Matches are distributed among these distances:
37 1 0.00
38 52 0.25
39 4 0.02
40 5 0.02
41 3 0.01
42 3 0.01
43 3 0.01
44 3 0.01
45 6 0.03
46 4 0.02
47 83 0.40
48 40 0.19
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:36296456 original size:85 final size:85
Alignment explanation
Indices: 36296308--36296579 Score: 481
Period size: 85 Copynumber: 3.2 Consensus size: 85
36296298 GGGCTGTCAC
* *
36296308 AGCACCACGTTATATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCACTATATG
1 AGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
36296373 TAACCGTGGCTTATCCACTT
66 TAACCGTGGCATATCCACTT
* * *
36296393 AGTACCACGTTACATGTTTAACTGTGGTATATCCACTTGGCACCACGTTAATGAATCAATATATG
1 AGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
36296458 TAACCGTGGCATATCCACTT
66 TAACCGTGGCATATCCACTT
*
36296478 AGCACCACGTTATATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 AGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
36296543 TAACCGTGGCATATCCACTT
66 TAACCGTGGCATATCCACTT
36296563 AGCACCACGTTACATGT
1 AGCACCACGTTACATGT
36296580 ATCAATATGT
Statistics
Matches: 176, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 176 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (85 bp):
AGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
TAACCGTGGCATATCCACTT
Found at i:36296586 original size:48 final size:47
Alignment explanation
Indices: 36296496--36296621 Score: 180
Period size: 48 Copynumber: 2.7 Consensus size: 47
36296486 GTTATATGTT
36296496 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
36296543 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* * * *
36296591 TGATCATGGTATATCCATTTAGCACCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
36296622 TTCCATTCCG
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 31 0.44
48 39 0.56
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:36300439 original size:49 final size:49
Alignment explanation
Indices: 36300380--36300604 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
36300370 CTGGTATGCA
* * * *
36300380 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCCGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
36300429 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* ** ***
36300478 TAGTAGCCTGCACTTAATACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
36300528 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
36300579 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
36300605 TGCGACCTCA
Statistics
Matches: 153, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
49 77 0.50
50 41 0.27
51 34 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:36300550 original size:99 final size:101
Alignment explanation
Indices: 36300378--36300604 Score: 298
Period size: 99 Copynumber: 2.3 Consensus size: 101
36300368 ATCTGGTATG
* * * * ** ***
36300378 CATAGTAGCCTGCACATAGTACTACACATGCGACC-AATTATCCCGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAATACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCAC
36300442 TTAGTACTACACACGTGA-C-CAATTATCCGGTACA
66 TTAGTACTACACACGTGATCACAATTATCCGGTACA
*
36300476 CGTAGTAGCCTGCACTTAATACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAATACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCAC
* * * *
36300541 TTAGTACTACACACGTGATCACAGTTTTCGGGTACG
66 TTAGTACTACACACGTGATCACAATTATCCGGTACA
*
36300577 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAATACTACACA
36300605 TGCGACCTCA
Statistics
Matches: 110, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
98 30 0.27
99 42 0.38
100 1 0.01
101 37 0.34
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACTTAATACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCAC
TTAGTACTACACACGTGATCACAATTATCCGGTACA
Done.