Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 121 of 433
Found at i:37018098 original size:17 final size:18
Alignment explanation
Indices: 37018076--37018109 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37018066 ATAATTGCAA
37018076 TTTAAAT-TCTAATTATT
1 TTTAAATATCTAATTATT
*
37018093 TTTAAATATGTAATTAT
1 TTTAAATATCTAATTAT
37018110 CACAATTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTAAATATCTAATTATT
Found at i:37046132 original size:14 final size:14
Alignment explanation
Indices: 37046115--37046142 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37046105 TTAAAGCAAG
37046115 AATTAAGAACAAAT
1 AATTAAGAACAAAT
37046129 AATTAAGAACAAAT
1 AATTAAGAACAAAT
37046143 CAAGTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
AATTAAGAACAAAT
Found at i:37051846 original size:25 final size:25
Alignment explanation
Indices: 37051818--37051870 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
37051808 TTTAATCAAC
37051818 ATATATATACTT-A-AAATTTATAAAA
1 ATATAT-TACTTAATAAATTT-TAAAA
*
37051843 ATATATTATTTAATAAATTTTAAAA
1 ATATATTACTTAATAAATTTTAAAA
37051868 ATA
1 ATA
37051871 AACACGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 4 0.16
25 15 0.60
26 6 0.24
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (25 bp):
ATATATTACTTAATAAATTTTAAAA
Found at i:37055778 original size:39 final size:39
Alignment explanation
Indices: 37055719--37055858 Score: 156
Period size: 39 Copynumber: 3.6 Consensus size: 39
37055709 ATCGTGATCT
* * * *
37055719 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
* *
37055758 GAAGCTCGAAGGCTAACTGAAACACACAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
* * *
37055797 GAAGCCCGAAGGCTAACTGAAGTACGCAAGTACTAAAC-
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
* * *
37055835 GAAATCCCAAAGGCTAACTAAAGC
1 G-AAGCCCGAAGGCTAACTGAAGC
37055859 TCATCAGAGT
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
38 1 0.01
39 84 0.99
ACGTcount: A:0.41, C:0.24, G:0.22, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
Found at i:37058945 original size:20 final size:20
Alignment explanation
Indices: 37058920--37058966 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
37058910 GTGTAGGCTG
37058920 CACATGGGTGTAAAGACCAT
1 CACATGGGTGTAAAGACCAT
** *
37058940 CACATGGGTGTGTAGACCTT
1 CACATGGGTGTAAAGACCAT
37058960 CACATGG
1 CACATGG
37058967 CCTAGGTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (20 bp):
CACATGGGTGTAAAGACCAT
Found at i:37060275 original size:27 final size:27
Alignment explanation
Indices: 37060242--37060500 Score: 297
Period size: 27 Copynumber: 9.6 Consensus size: 27
37060232 AAAGTACTCC
37060242 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
37060269 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
* * *
37060296 CGATTTGTAAAATTACCGTTTTACCCC
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
37060323 CAATTTACATAATTACCGTTTTACCC-
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
37060349 CTGATTTACATAATTATCGTTTTACCCT
1 C-GATTTATAGAATTACCGTTTTACCCT
*
37060377 CGACTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
37060404 CGATTTACAGAATTATCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
37060431 TGATTTATAGAATTACTGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
37060458 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
37060485 CGATTTACAAAATTAC
1 CGATTTATAGAATTAC
37060501 TAAAATACCC
Statistics
Matches: 201, Mismatches: 27, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 197 0.98
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTATAGAATTACCGTTTTACCCT
Found at i:37060337 original size:81 final size:82
Alignment explanation
Indices: 37060211--37060500 Score: 318
Period size: 81 Copynumber: 3.6 Consensus size: 82
37060201 TACTGAAATG
* **** * * *
37060211 CCCTCGACTTGTAAAATTACCAAAGTACTCCCGATTTATAGAATTACCGTTTTACCCTCAG-TTT
1 CCCTCGACTTATAAAATTACCGTTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCTGATTT
37060275 ATAGAATTACTGTTTTA
66 ATAGAATTACTGTTTTA
* * * *
37060292 CCCTCGATTTGTAAAATTACCGTTTTACCCCCAATTTACATAATTACCGTTTTACCC-CTGATTT
1 CCCTCGACTTATAAAATTACCGTTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCTGATTT
* *
37060356 ACATAATTA-TCGTTTTA
66 ATAGAATTACT-GTTTTA
* * * *
37060373 CCCTCGACTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCATTTTACCCT-TGATTT
1 CCCTCGACTTATAAAATTACCGTTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCTGATTT
37060437 ATAGAATTACTGTTTTA
66 ATAGAATTACTGTTTTA
* * * * * * *
37060454 CCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTAC
1 CCCTCGACTTATAAAATTACCGTTTTACCCCCGATTTACAGAATTAC
37060501 TAAAATACCC
Statistics
Matches: 177, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
80 3 0.02
81 173 0.98
82 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (82 bp):
CCCTCGACTTATAAAATTACCGTTTTACCCCCGATTTACAGAATTACCGTTTTACCCTCTGATTT
ATAGAATTACTGTTTTA
Found at i:37060509 original size:27 final size:27
Alignment explanation
Indices: 37060425--37060700 Score: 155
Period size: 27 Copynumber: 10.1 Consensus size: 27
37060415 ATTATCATTT
* * ****
37060425 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ****
37060452 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
37060479 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
37060506 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
37060533 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACTAAAA
* *** *
37060560 TACCCTTGGTTTGTGAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
** ** *
37060587 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *
37060614 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
37060641 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
37060670 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
37060697 TACC
1 TACC
37060701 TTTGGTTTGT
Statistics
Matches: 204, Mismatches: 36, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
26 1 0.00
27 177 0.87
28 7 0.03
29 19 0.09
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:37060526 original size:54 final size:54
Alignment explanation
Indices: 37060479--37060700 Score: 205
Period size: 54 Copynumber: 4.1 Consensus size: 54
37060469 ATTACTGTTT
* ** * **
37060479 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTGAAA
* *
37060533 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACTGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTGAAA
* * ** * *
37060587 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTGAAA
* * * * * **
37060641 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCC-TCAATTTGT-AAAATTACCA-AAATACCCTTGGTTTGTAAAATTACTGAAA
37060697 TACC
1 TACC
37060701 TTTGGTTTGT
Statistics
Matches: 138, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
53 1 0.01
54 93 0.67
55 8 0.06
56 36 0.26
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTGAAA
Found at i:37060526 original size:81 final size:81
Alignment explanation
Indices: 37060272--37060527 Score: 237
Period size: 81 Copynumber: 3.2 Consensus size: 81
37060262 TTACCCTCAG
* * ** * * * *
37060272 TTTATAGAATTACTGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCCCAATTTACATAATT
1 TTTATAAAATTACTGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATT
* **** *
37060337 ACCGTTTTACCCCTGA
66 ATCAAAATACCCTTGA
* * * *
37060353 TTTACATAATTA-TCGTTTTACCCTCGACTTATAGAATTACCGTTTTACCCTCGATTTACAGAAT
1 TTTATAAAATTACT-GTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAAT
***
37060417 TATCATTTTACCCTTGA
65 TATCAAAATACCCTTGA
* * * *
37060434 TTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATT
1 TTTATAAAATTACTGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATT
*
37060499 A-CTAAAATACCCTTGG
66 ATC-AAAATACCCTTGA
*
37060515 TTTGTAAAATTAC
1 TTTATAAAATTAC
37060528 CAAAATACCC
Statistics
Matches: 148, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
80 2 0.01
81 145 0.98
82 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (81 bp):
TTTATAAAATTACTGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAAAATT
ATCAAAATACCCTTGA
Found at i:37060642 original size:81 final size:81
Alignment explanation
Indices: 37060494--37060648 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
37060484 TCGATTTACA
*** *
37060494 AAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
37060559 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
*
37060575 AAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACCA
37060637 GAAATACCCTTG
64 -AAATACCCTTG
37060649 ACTTTCTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 56 0.85
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACCAAA
ATACCCTTGGTTTGTG
Found at i:37060705 original size:27 final size:27
Alignment explanation
Indices: 37060492--37060709 Score: 163
Period size: 27 Copynumber: 8.0 Consensus size: 27
37060482 CCTCGATTTA
37060492 CAAAATTACTAAAATACCCTTGGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
* * * *
37060519 TAAAATTACCAAAATACCCCTAGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
* *
37060546 TAAAATTACCAAAATACCCTTGGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
** * ***
37060573 TGAAATTACTGAAATACCCTCAATTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
* * * * *
37060600 TAAAATTACCAAAATACCCCTGATTTA
1 CAAAATTACTAAAATACCCTTGGTTTG
* *
37060627 CAAAGTTAC-AGAAATACCCTTGACTTT-
1 CAAAATTACTA-AAATACCCTTG-GTTTG
* *
37060654 CTAAAAATTA-TAGAAATACCATTGGTTTA
1 C--AAAATTACTA-AAATACCCTTGGTTTG
* *
37060683 CAAAATTACTGAAATACCTTTGGTTTG
1 CAAAATTACTAAAATACCCTTGGTTTG
37060710 TTGATTTACC
Statistics
Matches: 155, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
26 1 0.01
27 128 0.83
28 7 0.05
29 19 0.12
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
CAAAATTACTAAAATACCCTTGGTTTG
Found at i:37060826 original size:27 final size:27
Alignment explanation
Indices: 37060762--37060826 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
37060752 ACCCCTAAAA
*
37060762 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
37060789 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
37060816 GGTAAAATGAC
1 GGTAAAATGAC
37060827 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:37062085 original size:9 final size:9
Alignment explanation
Indices: 37062073--37062129 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
37062063 TTTGATAAAC
37062073 ATGATATGT
1 ATGATATGT
37062082 ATGATATGT
1 ATGATATGT
*
37062091 ACATGACATGT
1 --ATGATATGT
*
37062102 ATGATATGCAC
1 ATGATATG--T
37062113 ATGATATGT
1 ATGATATGT
37062122 ATGATATG
1 ATGATATG
37062130 CACATGAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:37062096 original size:20 final size:20
Alignment explanation
Indices: 37062071--37062141 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
37062061 ATTTTGATAA
*
37062071 ACATGATATGTATGATATGT
1 ACATGATATGTATGATATGC
*
37062091 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
37062111 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
37062131 ACATGAGATGT
1 ACATGATATGT
37062142 TCATAAATGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37062218 original size:23 final size:23
Alignment explanation
Indices: 37062188--37062355 Score: 255
Period size: 23 Copynumber: 7.2 Consensus size: 23
37062178 AGGAAGTGCA
37062188 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
37062211 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
37062234 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
37062258 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
37062281 AAAGGGCTTATGCCCCAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
37062305 AAAAGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
37062328 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
37062351 GAAAG
1 -AAAG
37062356 AGGCAAGGCC
Statistics
Matches: 131, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
23 86 0.66
24 45 0.34
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:37062279 original size:47 final size:47
Alignment explanation
Indices: 37062188--37062349 Score: 272
Period size: 47 Copynumber: 3.5 Consensus size: 47
37062178 AGGAAGTGCA
*
37062188 AAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
37062234 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* * *
37062281 AAAGGGCTTATGCCCCAGTGATCAAAAAGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
37062328 AAAGGGCTTTTGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT
37062350 TGAAAGAGGC
Statistics
Matches: 109, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 22 0.20
47 87 0.80
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:37062299 original size:70 final size:71
Alignment explanation
Indices: 37062186--37062355 Score: 263
Period size: 70 Copynumber: 2.4 Consensus size: 71
37062176 GGAGGAAGTG
* * * *
37062186 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAAGGCTTACGCCCC
37062250 AGTTAT
66 AGTTAT
37062256 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAAGGCTTACGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAAGGCTTACGCCCC
37062321 AGTTAT
66 AGTTAT
* *
37062327 -TAAAGGGCTTTTGCCCCAGTTATTGAAAG
1 CAAAAGGGCTTATGCCCCAGTTATT-AAAG
37062356 AGGCAAGGCC
Statistics
Matches: 92, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
70 68 0.74
71 24 0.26
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGATCAAAAAGGCTTACGCCCC
AGTTAT
Found at i:37062558 original size:42 final size:42
Alignment explanation
Indices: 37062495--37062586 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
37062485 TAGTCTCCCC
* **
37062495 AAATGGGTTTGCATACATTCATTGGTATT-TCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTAT-ATGTGATATTG
* *
37062537 AAATGGGCTTGCATTCTTTCATTGACATTATATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTATATGTGATATTG
37062579 AAATGGGC
1 AAATGGGC
37062587 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTATATGTGATATTG
Found at i:37062645 original size:31 final size:31
Alignment explanation
Indices: 37062610--37062673 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37062600 CGTTTACAGT
*
37062610 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
37062641 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37062672 AA
1 AA
37062674 TATGAAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37062900 original size:24 final size:24
Alignment explanation
Indices: 37062873--37062923 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
37062863 GGTGATCGCT
37062873 TTTGGACCTTTAAATAAGCATTGG
1 TTTGGACCTTTAAATAAGCATTGG
37062897 TTTGGACCTTTAAATAAGCATTGG
1 TTTGGACCTTTAAATAAGCATTGG
37062921 TTT
1 TTT
37062924 TCATTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGGACCTTTAAATAAGCATTGG
Found at i:37065135 original size:21 final size:22
Alignment explanation
Indices: 37065109--37065167 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
37065099 GTTTTAAGAA
*
37065109 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
37065130 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
37065152 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
37065168 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:37065182 original size:26 final size:24
Alignment explanation
Indices: 37065138--37065186 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
37065128 ATTTGTTTTA
*
37065138 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
37065162 ATATTTGATTTATTATATTTTTAAA
1 ATATTTG-TTT-TTATATTTTTAAA
37065187 ATTTTTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:37066052 original size:4 final size:4
Alignment explanation
Indices: 37066043--37066100 Score: 116
Period size: 4 Copynumber: 14.5 Consensus size: 4
37066033 TACAAGTGTA
37066043 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37066091 ATAC ATAC AT
1 ATAC ATAC AT
37066101 TGTAGTATAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 54 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:37068357 original size:11 final size:11
Alignment explanation
Indices: 37068341--37068378 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
37068331 TCTCGTTTGT
37068341 TTCTTGATAGG
1 TTCTTGATAGG
37068352 TTCTTGATAGG
1 TTCTTGATAGG
*
37068363 TTCTTGACAGG
1 TTCTTGATAGG
37068374 TTCTT
1 TTCTT
37068379 TCCTGCAGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.16, C:0.13, G:0.24, T:0.47
Consensus pattern (11 bp):
TTCTTGATAGG
Found at i:37070892 original size:15 final size:17
Alignment explanation
Indices: 37070872--37070904 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
37070862 AAAAAAATTC
37070872 TTATTTT-ATTTT-TGT
1 TTATTTTGATTTTATGT
37070887 TTATTTTGATTTTATGT
1 TTATTTTGATTTTATGT
37070904 T
1 T
37070905 AACTTAGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (17 bp):
TTATTTTGATTTTATGT
Found at i:37071367 original size:44 final size:44
Alignment explanation
Indices: 37071304--37071393 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
37071294 ATCGGGATAG
37071304 ACCAATCATCCCTTAAAGTTAAACTCGATTTCAAGTCAAAGTGC
1 ACCAATCATCCCTTAAAGTTAAACTCGATTTCAAGTCAAAGTGC
37071348 ACCAATCATCCCTTAAAGTTAAACTCGATTTCAAGTCAAAGTGC
1 ACCAATCATCCCTTAAAGTTAAACTCGATTTCAAGTCAAAGTGC
37071392 AC
1 AC
37071394 GTTGGGTTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.27
Consensus pattern (44 bp):
ACCAATCATCCCTTAAAGTTAAACTCGATTTCAAGTCAAAGTGC
Found at i:37073795 original size:2 final size:2
Alignment explanation
Indices: 37073788--37073812 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37073778 ATCACATGCT
37073788 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
37073813 TTGTATTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37073852 original size:24 final size:24
Alignment explanation
Indices: 37073816--37073875 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
37073806 TATATATTTG
*
37073816 TATTTTCAATTTATTGGAAAAAAGT
1 TATTTT-AATTTATTAGAAAAAAGT
* *
37073841 TATTTTAATTTATTAGAAAACATT
1 TATTTTAATTTATTAGAAAAAAGT
*
37073865 TATTGTAATTT
1 TATTTTAATTT
37073876 TTTAATATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.50
Consensus pattern (24 bp):
TATTTTAATTTATTAGAAAAAAGT
Found at i:37075381 original size:22 final size:22
Alignment explanation
Indices: 37075328--37075373 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
37075318 TAGTGGTCTA
37075328 TTGAATCATCCACTAAACTAGC
1 TTGAATCATCCACTAAACTAGC
37075350 TTGAATCATCCACTAAACTAGC
1 TTGAATCATCCACTAAACTAGC
37075372 TT
1 TT
37075374 TTATCATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (22 bp):
TTGAATCATCCACTAAACTAGC
Found at i:37078643 original size:6 final size:6
Alignment explanation
Indices: 37078634--37078664 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
37078624 ATTTCATTAC
37078634 CATTTT CATTTT CATTTT CATTTT CATTTT C
1 CATTTT CATTTT CATTTT CATTTT CATTTT C
37078665 CAATAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.65
Consensus pattern (6 bp):
CATTTT
Found at i:37078648 original size:18 final size:18
Alignment explanation
Indices: 37078625--37078664 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
37078615 ACTCATATAA
37078625 TTTCATTACCATTTTCAT
1 TTTCATTACCATTTTCAT
**
37078643 TTTCATTTTCATTTTCAT
1 TTTCATTACCATTTTCAT
37078661 TTTC
1 TTTC
37078665 CAATAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTCATTACCATTTTCAT
Found at i:37078931 original size:17 final size:17
Alignment explanation
Indices: 37078905--37078939 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
37078895 AATCAGTAAT
*
37078905 AAACTTCGTACAATCAC
1 AAACTCCGTACAATCAC
*
37078922 AAACTCCGTACCATCAC
1 AAACTCCGTACAATCAC
37078939 A
1 A
37078940 TATACCCCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.34, G:0.06, T:0.20
Consensus pattern (17 bp):
AAACTCCGTACAATCAC
Found at i:37082275 original size:3 final size:3
Alignment explanation
Indices: 37082269--37082316 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
37082259 TTATTATTTG
37082269 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37082317 TGTTTTTATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37085857 original size:30 final size:32
Alignment explanation
Indices: 37085822--37085908 Score: 88
Period size: 33 Copynumber: 2.7 Consensus size: 32
37085812 ATAATATGAT
* * *
37085822 TCTTTAATTATGTCTTG-TTTATT-AAATGCA
1 TCTTTAATTATGCCTTGCATTATTGAAATACA
*
37085852 TCTTTAATTAATGCCTTGCATTATTGATATACA
1 TCTTTAATT-ATGCCTTGCATTATTGAAATACA
* *
37085885 TCTTTTAATTATGACATGCATTAT
1 TC-TTTAATTATGCCTTGCATTAT
37085909 GTGTTCTGCA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
30 9 0.19
31 7 0.15
32 5 0.11
33 19 0.40
34 7 0.15
ACGTcount: A:0.29, C:0.13, G:0.09, T:0.49
Consensus pattern (32 bp):
TCTTTAATTATGCCTTGCATTATTGAAATACA
Found at i:37094083 original size:21 final size:19
Alignment explanation
Indices: 37094058--37094105 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
37094048 TTCAATTTGT
37094058 TTTGAGTTAATGTTTTTCAAG
1 TTTGAGTTAATG-TTTT-AAG
**
37094079 TTTGAGGCAATGTTTTAAG
1 TTTGAGTTAATGTTTTAAG
37094098 TTTGAGTT
1 TTTGAGTT
37094106 GCACAGTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 9 0.39
20 4 0.17
21 10 0.43
ACGTcount: A:0.23, C:0.04, G:0.23, T:0.50
Consensus pattern (19 bp):
TTTGAGTTAATGTTTTAAG
Found at i:37095158 original size:15 final size:16
Alignment explanation
Indices: 37095123--37095160 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
37095113 TACCTTCAAT
37095123 TTATTTTAAGAAATAA
1 TTATTTTAAGAAATAA
* *
37095139 TTATTTTAA-ATATTA
1 TTATTTTAAGAAATAA
37095154 TTATTTT
1 TTATTTT
37095161 CTTAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TTATTTTAAGAAATAA
Found at i:37098176 original size:7 final size:7
Alignment explanation
Indices: 37098164--37098189 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37098154 CCCTACTATA
37098164 TTTAAAT
1 TTTAAAT
37098171 TTTAAAT
1 TTTAAAT
37098178 TTTAAAT
1 TTTAAAT
37098185 TTTAA
1 TTTAA
37098190 TATAATCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TTTAAAT
Found at i:37101918 original size:107 final size:108
Alignment explanation
Indices: 37101748--37101963 Score: 389
Period size: 107 Copynumber: 2.0 Consensus size: 108
37101738 AAAAAACACG
*
37101748 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAATTTTGTTAGAAATTTTATTATTT
1 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAAGTTTGTTAGAAATTTTATTATTT
*
37101813 AAAACTTATTCCAACTTAACATATCATTGTTTTGTTAAACTAA
66 AAAACTTATTCCAACTTAACATATCATTATTTTGTTAAACTAA
37101856 TCAAAAATTTTAT-AGAGTAATTAACAAAAATTTTAATACAAGTTTGTTAGAAATTTTATTATTT
1 TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAAGTTTGTTAGAAATTTTATTATTT
* *
37101920 AAAACTTATTCTAACTTAACATATTATTATTTTGTTAAACTAA
66 AAAACTTATTCCAACTTAACATATCATTATTTTGTTAAACTAA
37101963 T
1 T
37101964 TTTTTATTTA
Statistics
Matches: 104, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
107 91 0.88
108 13 0.12
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.44
Consensus pattern (108 bp):
TCAAAAATTTTATCAGAGTAATTAACAAAAATTTTAATACAAGTTTGTTAGAAATTTTATTATTT
AAAACTTATTCCAACTTAACATATCATTATTTTGTTAAACTAA
Found at i:37103329 original size:19 final size:19
Alignment explanation
Indices: 37103305--37103347 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
37103295 TTTTTTGTCT
*
37103305 TTTTATCT-TTATTTATTTA
1 TTTTATCTATTA-TTATTAA
*
37103324 TTTTATTTATTATTATTAA
1 TTTTATCTATTATTATTAA
37103343 TTTTA
1 TTTTA
37103348 AAATTTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTATCTATTATTATTAA
Found at i:37103330 original size:13 final size:14
Alignment explanation
Indices: 37103306--37103334 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
37103296 TTTTTGTCTT
37103306 TTTATCTTTATTTA
1 TTTATCTTTATTTA
37103320 TTTAT-TTTATTTA
1 TTTATCTTTATTTA
37103333 TT
1 TT
37103335 ATTATTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATCTTTATTTA
Found at i:37103368 original size:46 final size:46
Alignment explanation
Indices: 37103329--37103453 Score: 123
Period size: 48 Copynumber: 2.7 Consensus size: 46
37103319 ATTTATTTTA
*
37103329 TTTATTATTAT-TAATTTTAAAATTTTTGAAATATATATTTAAAATAT
1 TTTATTAATATATAATTTTAAAA-TTTT-AAATATATATTTAAAATAT
* * *
37103376 TTTATTAATATATATTTTTTAAATTTTAAATATATATTTTGAAATTAT
1 TTTATTAATATATAATTTTAAAATTTTAAATATATA-TTT-AAAATAT
* * *
37103424 TTTTTTAAT-TAT-TTTTTAATA-TTTAAATAT
1 TTTATTAATATATAATTTTAAAATTTTAAATAT
37103454 TTTAAACTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
45 9 0.13
46 16 0.24
47 20 0.29
48 23 0.34
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (46 bp):
TTTATTAATATATAATTTTAAAATTTTAAATATATATTTAAAATAT
Found at i:37103369 original size:22 final size:21
Alignment explanation
Indices: 37103344--37103414 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 21
37103334 TATTATTAAT
37103344 TTTAAAATTTTTGAAATATATA
1 TTTAAAATTTTT-AAATATATA
37103366 TTTAAAATATTTTATTAATATATA
1 TTTAAAAT-TTTTA--AATATATA
*
37103390 TTTTTTAAA-TTTTAAATATATA
1 --TTTAAAATTTTTAAATATATA
37103412 TTT
1 TTT
37103415 TGAAATTATT
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
20 3 0.07
22 17 0.40
23 4 0.09
24 13 0.30
26 6 0.14
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (21 bp):
TTTAAAATTTTTAAATATATA
Found at i:37103383 original size:13 final size:13
Alignment explanation
Indices: 37103350--37103442 Score: 53
Period size: 12 Copynumber: 7.7 Consensus size: 13
37103340 TAATTTTAAA
*
37103350 ATTTTTGAAATAT
1 ATTTTTTAAATAT
*
37103363 A-TATTTAAA-AT
1 ATTTTTTAAATAT
37103374 ATTTTATTAATATAT
1 ATTTT-TTAA-ATAT
37103389 ATTTTTT--A-A-
1 ATTTTTTAAATAT
37103398 A--TTTTAAATAT
1 ATTTTTTAAATAT
*
37103409 ATATTTTGAAAT-T
1 AT-TTTTTAAATAT
*
37103422 ATTTTTTTAAT-T
1 ATTTTTTAAATAT
37103434 ATTTTTTAA
1 ATTTTTTAA
37103443 TATTTAAATA
Statistics
Matches: 62, Mismatches: 7, Indels: 23
0.67 0.08 0.25
Matches are distributed among these distances:
7 4 0.06
9 2 0.03
10 2 0.03
11 5 0.08
12 24 0.39
13 8 0.13
14 10 0.16
15 7 0.11
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (13 bp):
ATTTTTTAAATAT
Found at i:37103410 original size:20 final size:22
Alignment explanation
Indices: 37103380--37103421 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
37103370 AAATATTTTA
*
37103380 TTAATATATAT-TTTTTAAATT
1 TTAATATATATATTTTGAAATT
37103401 TTAA-ATATATATTTTGAAATT
1 TTAATATATATATTTTGAAATT
37103422 ATTTTTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TTAATATATATATTTTGAAATT
Found at i:37103425 original size:24 final size:23
Alignment explanation
Indices: 37103342--37103426 Score: 70
Period size: 24 Copynumber: 3.7 Consensus size: 23
37103332 ATTATTATTA
*
37103342 ATTTTAAAATT-TTTGAAATATAT
1 ATTTT-AAATTATTTTAAATATAT
*
37103365 A-TTTAAAATATTTTATTAATATAT
1 ATTTTAAATTATTTTA--AATATAT
*
37103389 ATTTTTTAA--ATTTTAAATATAT
1 A-TTTTAAATTATTTTAAATATAT
37103411 ATTTTGAAATTATTTT
1 ATTTT-AAATTATTTT
37103427 TTTAATTATT
Statistics
Matches: 50, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
21 8 0.16
22 17 0.34
23 1 0.02
24 19 0.38
26 5 0.10
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
ATTTTAAATTATTTTAAATATAT
Found at i:37103425 original size:48 final size:45
Alignment explanation
Indices: 37103329--37103453 Score: 130
Period size: 47 Copynumber: 2.7 Consensus size: 45
37103319 ATTTATTTTA
* * *
37103329 TTTATTATTATTAATTTTAAAATTTTTGAAATATATATTTAAAATAT
1 TTTATTAATATTATTTTTTAAA-TTTT-AAATATATATTTAAAATAT
*
37103376 TTTATTAATATATATTTTTTAAATTTTAAATATATATTTTGAAATTAT
1 TTTATTAATAT-TATTTTTTAAATTTTAAATATATA-TTT-AAAATAT
*
37103424 TTT-TTTA-ATTATTTTTT-AATATTTAAATAT
1 TTTATTAATATTATTTTTTAAAT-TTTAAATAT
37103454 TTTAAACTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
44 3 0.04
45 17 0.25
46 11 0.16
47 20 0.29
48 18 0.26
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (45 bp):
TTTATTAATATTATTTTTTAAATTTTAAATATATATTTAAAATAT
Found at i:37103537 original size:14 final size:15
Alignment explanation
Indices: 37103512--37103544 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
37103502 TTAATTTGTT
37103512 TTATAATATTTTAAA
1 TTATAATATTTTAAA
37103527 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
37103541 TTAT
1 TTAT
37103545 TTTAAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:37103849 original size:55 final size:55
Alignment explanation
Indices: 37103772--37103880 Score: 218
Period size: 55 Copynumber: 2.0 Consensus size: 55
37103762 TTTAAAAGTT
37103772 AAAAAATAGTATTTTAATTAAAAAAGTGAAATTTGATTAATTAGAAAATAAAAAC
1 AAAAAATAGTATTTTAATTAAAAAAGTGAAATTTGATTAATTAGAAAATAAAAAC
37103827 AAAAAATAGTATTTTAATTAAAAAAGTGAAATTTGATTAATTAGAAAATAAAAA
1 AAAAAATAGTATTTTAATTAAAAAAGTGAAATTTGATTAATTAGAAAATAAAAA
37103881 ATATTTGTTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.59, C:0.01, G:0.09, T:0.31
Consensus pattern (55 bp):
AAAAAATAGTATTTTAATTAAAAAAGTGAAATTTGATTAATTAGAAAATAAAAAC
Found at i:37103881 original size:30 final size:30
Alignment explanation
Indices: 37103790--37103881 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
37103780 GTATTTTAAT
37103790 TAAAAAAGTGAAATTTGATTAATTAGAAAA
1 TAAAAAAGTGAAATTTGATTAATTAGAAAA
* * * *
37103820 TAAAAACA--AAAAATAGTATT--TT---AAT
1 TAAAAA-AGTGAAATTTG-ATTAATTAGAAAA
37103845 TAAAAAAGTGAAATTTGATTAATTAGAAAA
1 TAAAAAAGTGAAATTTGATTAATTAGAAAA
37103875 TAAAAAA
1 TAAAAAA
37103882 TATTTGTTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 18
0.63 0.11 0.25
Matches are distributed among these distances:
24 1 0.02
25 11 0.24
26 5 0.11
27 2 0.04
28 2 0.04
29 5 0.11
30 18 0.40
31 1 0.02
ACGTcount: A:0.60, C:0.01, G:0.10, T:0.29
Consensus pattern (30 bp):
TAAAAAAGTGAAATTTGATTAATTAGAAAA
Found at i:37103904 original size:19 final size:20
Alignment explanation
Indices: 37103882--37103925 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
37103872 AAATAAAAAA
37103882 TATTTGTTAAAAAAAG-ATT
1 TATTTGTTAAAAAAAGAATT
*
37103901 TATTTGTTAAAAAATGAATT
1 TATTTGTTAAAAAAAGAATT
37103921 TATTT
1 TATTT
37103926 AAAAATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (20 bp):
TATTTGTTAAAAAAAGAATT
Found at i:37103981 original size:20 final size:20
Alignment explanation
Indices: 37103928--37103987 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
37103918 ATTTATTTAA
37103928 AAATA-TATATATTAAAAAGT
1 AAATATTATATATTAAAAA-T
* *
37103948 AAAAATT-TAAATTAAAAAT
1 AAATATTATATATTAAAAAT
*
37103967 TAATATTATATATTATAAAAT
1 AAATATTATATATTA-AAAAT
37103988 CACATCATGT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 6 0.19
20 20 0.62
21 6 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
AAATATTATATATTAAAAAT
Found at i:37104338 original size:2 final size:2
Alignment explanation
Indices: 37104331--37104360 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
37104321 TGCGTAAATC
37104331 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37104361 ATCATATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:37104367 original size:230 final size:230
Alignment explanation
Indices: 37104114--37104547 Score: 733
Period size: 230 Copynumber: 1.9 Consensus size: 230
37104104 ACATGCGTAA
* *
37104114 ATATATATATATATAGAATCATATTAGTGAATCTGCTAATACATACTTCATCCAGATAAAGTATG
1 ATATATATATATATAGAATCATATTAGTAAATCTACTAATACATACTTCATCCAGATAAAGTATG
*
37104179 CATTATTAAAATTAAATTAAAATATTAAATAAGAAATAAAATTATAAAACAAAATGTTATTTGAA
66 CATTATTAAAATTAAACTAAAATATTAAATAAGAAATAAAATTATAAAACAAAATGTTATTTGAA
* * *
37104244 AAATAATTATTATTGTAATGAGATACATGTTTTATTAGGTATAAGTATTTAAATTTTTGTTTTTA
131 AAATAACTATTATTGTAACGAGATACATGTTTTATTAAGTATAAGTATTTAAATTTTTGTTTTTA
37104309 TAATATGATACATGCGTAAATCTATATATATATAT
196 TAATATGATACATGCGTAAATCTATATATATATAT
* * * *
37104344 ATATATATATATATATAATCATATTAGTAAATCTATTAATACATACTTTATCCGGATAAAGTATG
1 ATATATATATATATAGAATCATATTAGTAAATCTACTAATACATACTTCATCCAGATAAAGTATG
* *
37104409 CATTATTAAAATTAAACTAAAATATTAAATAAGAAATAAAATTATAAAATAATATGTTATTTGAA
66 CATTATTAAAATTAAACTAAAATATTAAATAAGAAATAAAATTATAAAACAAAATGTTATTTGAA
* *
37104474 AAATAACTATTATTGTAACGAGATACATGTTTTATTAAGTATAATTATTTAAATTTTTGTTTTTG
131 AAATAACTATTATTGTAACGAGATACATGTTTTATTAAGTATAAGTATTTAAATTTTTGTTTTTA
*
37104539 TAATGTGAT
196 TAATATGAT
37104548 CTATATATAT
Statistics
Matches: 189, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
230 189 1.00
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.41
Consensus pattern (230 bp):
ATATATATATATATAGAATCATATTAGTAAATCTACTAATACATACTTCATCCAGATAAAGTATG
CATTATTAAAATTAAACTAAAATATTAAATAAGAAATAAAATTATAAAACAAAATGTTATTTGAA
AAATAACTATTATTGTAACGAGATACATGTTTTATTAAGTATAAGTATTTAAATTTTTGTTTTTA
TAATATGATACATGCGTAAATCTATATATATATAT
Found at i:37106072 original size:2 final size:2
Alignment explanation
Indices: 37106065--37106090 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37106055 ATTATCATTA
37106065 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
37106091 TTGCATTCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37112175 original size:6 final size:6
Alignment explanation
Indices: 37112161--37112194 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
37112151 TAGATGGAGA
*
37112161 AGGGGG AGGGAG AGGGGG A-GGGG AGGGGG AGGGG
1 AGGGGG AGGGGG AGGGGG AGGGGG AGGGGG AGGGG
37112195 AGGAACTGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.21, C:0.00, G:0.79, T:0.00
Consensus pattern (6 bp):
AGGGGG
Found at i:37112186 original size:11 final size:11
Alignment explanation
Indices: 37112161--37112197 Score: 65
Period size: 11 Copynumber: 3.3 Consensus size: 11
37112151 TAGATGGAGA
37112161 AGGGGGAGGGAG
1 AGGGGGAGGG-G
37112173 AGGGGGAGGGG
1 AGGGGGAGGGG
37112184 AGGGGGAGGGG
1 AGGGGGAGGGG
37112195 AGG
1 AGG
37112198 AACTGCAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.22, C:0.00, G:0.78, T:0.00
Consensus pattern (11 bp):
AGGGGGAGGGG
Found at i:37118046 original size:28 final size:28
Alignment explanation
Indices: 37117981--37118056 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
37117971 TTTAGTGTTG
*
37117981 TTCTGTTCTAATAAGCACTACAGTGCTA
1 TTCTGTTCTGATAAGCACTACAGTGCTA
* *
37118009 TTTTGTTCTGATAAGCACTACATTGCTA
1 TTCTGTTCTGATAAGCACTACAGTGCTA
*
37118037 TTCTGTTCTGTTAACGCACT
1 TTCTGTTCTGATAA-GCACT
37118057 TCGGTGCCCT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 37 0.88
29 5 0.12
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (28 bp):
TTCTGTTCTGATAAGCACTACAGTGCTA
Found at i:37121284 original size:18 final size:22
Alignment explanation
Indices: 37121241--37121284 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 22
37121231 CTTAGTTGTA
37121241 AATTATGAATACTTATGCTAGT
1 AATTATGAATACTTATGCTAGT
37121263 -ATTAT-AA-ACTT-TGCTA-T
1 AATTATGAATACTTATGCTAGT
37121280 AATTA
1 AATTA
37121285 GAAGATATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
17 1 0.05
18 9 0.43
19 4 0.19
20 2 0.10
21 5 0.24
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (22 bp):
AATTATGAATACTTATGCTAGT
Found at i:37122892 original size:9 final size:9
Alignment explanation
Indices: 37122865--37122900 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
37122855 TTTTTACCTC
37122865 TCTTTTTTT
1 TCTTTTTTT
*
37122874 CCTTTTTTT
1 TCTTTTTTT
37122883 TCTTTTTTT
1 TCTTTTTTT
37122892 T-TTTTTTT
1 TCTTTTTTT
37122900 T
1 T
37122901 GGTTTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:37123752 original size:12 final size:12
Alignment explanation
Indices: 37123735--37123760 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37123725 AAGAATGTAA
37123735 TATTATTTTTGG
1 TATTATTTTTGG
37123747 TATTATTTTTGG
1 TATTATTTTTGG
37123759 TA
1 TA
37123761 ACAGAATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.15, T:0.65
Consensus pattern (12 bp):
TATTATTTTTGG
Found at i:37123999 original size:37 final size:37
Alignment explanation
Indices: 37123944--37124032 Score: 162
Period size: 37 Copynumber: 2.4 Consensus size: 37
37123934 TTGGTCTTAC
*
37123944 TTTTCATACAA-TTATGATAAATTGTGATAATTATTG
1 TTTTTATACAATTTATGATAAATTGTGATAATTATTG
37123980 TTTTTATACAATTTATGATAAATTGTGATAATTATTG
1 TTTTTATACAATTTATGATAAATTGTGATAATTATTG
37124017 TTTTTATACAATTTAT
1 TTTTTATACAATTTAT
37124033 ATATGAATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
36 10 0.20
37 41 0.80
ACGTcount: A:0.35, C:0.04, G:0.09, T:0.52
Consensus pattern (37 bp):
TTTTTATACAATTTATGATAAATTGTGATAATTATTG
Found at i:37136464 original size:16 final size:17
Alignment explanation
Indices: 37136423--37136464 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
37136413 AGTTTAGTAT
37136423 TTAATAATTTAATATTG
1 TTAATAATTTAATATTG
37136440 TTAAT-ATTTAAT-TATG
1 TTAATAATTTAATAT-TG
37136456 -TAATAATTT
1 TTAATAATTT
37136465 TATTTTACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 5 0.22
16 13 0.57
17 5 0.22
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TTAATAATTTAATATTG
Found at i:37146789 original size:5 final size:5
Alignment explanation
Indices: 37146768--37146820 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
37146758 TGTTAAAATA
* *
37146768 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
37146816 TATAT
1 TATAT
37146821 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:37146799 original size:10 final size:9
Alignment explanation
Indices: 37146765--37146821 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
37146755 ATGTGTTAAA
37146765 ATATATATT
1 ATATATATT
*
37146774 AAAT-TATT
1 ATATATATT
37146782 AT-TATATT
1 ATATATATT
37146790 ATAGTATATT
1 ATA-TATATT
37146800 ATAT-TA-T
1 ATATATATT
37146807 ATATTATATT
1 ATA-TATATT
37146817 ATATA
1 ATATA
37146822 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Found at i:37146811 original size:12 final size:12
Alignment explanation
Indices: 37146766--37146821 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
37146756 TGTGTTAAAA
*
37146766 TATATATTAAAT
1 TATATATTATAT
37146778 TAT-TATTATATT
1 TATATATTATA-T
37146790 ATAGTATATTATAT
1 -TA-TATATTATAT
37146804 TATATATTATAT
1 TATATATTATAT
37146816 TATATA
1 TATATA
37146822 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:37148156 original size:18 final size:19
Alignment explanation
Indices: 37148135--37148173 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
37148125 ATATATAGAT
37148135 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
37148153 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
37148172 AT
1 AT
37148174 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:37148522 original size:39 final size:39
Alignment explanation
Indices: 37148412--37148546 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
37148402 GACCTCGAGT
* * * *
37148412 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
37148453 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
37148491 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
37148530 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
37148547 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:37148690 original size:18 final size:19
Alignment explanation
Indices: 37148669--37148709 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
37148659 AATGAAATGA
37148669 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
37148687 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
37148706 GAAA
1 GAAA
37148710 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:37158588 original size:23 final size:23
Alignment explanation
Indices: 37158561--37158604 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
37158551 GAACATGTTT
37158561 ATAAAAATATGTATTTAATATAC
1 ATAAAAATATGTATTTAATATAC
* *
37158584 ATAAATATATTTATTTAATAT
1 ATAAAAATATGTATTTAATAT
37158605 TTACAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATAAAAATATGTATTTAATATAC
Found at i:37158981 original size:18 final size:20
Alignment explanation
Indices: 37158958--37158994 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
37158948 TATATTTTTG
37158958 AATTTTTT-A-TATTTATAT
1 AATTTTTTAATTATTTATAT
37158976 AATTTTTTAATTATTTATA
1 AATTTTTTAATTATTTATA
37158995 AAATGTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 1 0.06
20 8 0.47
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
AATTTTTTAATTATTTATAT
Found at i:37159026 original size:2 final size:2
Alignment explanation
Indices: 37159021--37159046 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37159011 AAAAACTTAC
37159021 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
37159047 TTATGTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37172223 original size:10 final size:10
Alignment explanation
Indices: 37172208--37172267 Score: 68
Period size: 10 Copynumber: 6.0 Consensus size: 10
37172198 TAAATTTAGG
*
37172208 ATTTATTTTT
1 ATTTATCTTT
*
37172218 ATTTATCTTC
1 ATTTATCTTT
*
37172228 AATTATCTTT
1 ATTTATCTTT
*
37172238 AATTATCTTT
1 ATTTATCTTT
37172248 ATTTAT-TTGT
1 ATTTATCTT-T
37172258 ATTTATCTTT
1 ATTTATCTTT
37172268 TAAAATTTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:37173805 original size:97 final size:97
Alignment explanation
Indices: 37173639--37173838 Score: 382
Period size: 97 Copynumber: 2.1 Consensus size: 97
37173629 TGAGGATTAG
*
37173639 ATTTTTTAGAATTAAAATTAAATTGATATCATATATGAATATTGAGTGTTAAAATTACTATTATG
1 ATTTTTTAGAATTAAAATTAAATTGATATCATATATAAATATTGAGTGTTAAAATTACTATTATG
37173704 TCAATTTTAAAAATTAAATAACTATTTTTTTA
66 TCAATTTTAAAAATTAAATAACTATTTTTTTA
37173736 ATTTTTTAGAATTAAAATTAAATTGATATCATATATAAATATTGAGTGTTAAAATTACTATTATG
1 ATTTTTTAGAATTAAAATTAAATTGATATCATATATAAATATTGAGTGTTAAAATTACTATTATG
37173801 TCAATTTTAAAAATTAAATAACTATTTTTTTA
66 TCAATTTTAAAAATTAAATAACTATTTTTTTA
*
37173833 ACTTTT
1 ATTTTT
37173839 ATAAAATAAT
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 101 1.00
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (97 bp):
ATTTTTTAGAATTAAAATTAAATTGATATCATATATAAATATTGAGTGTTAAAATTACTATTATG
TCAATTTTAAAAATTAAATAACTATTTTTTTA
Found at i:37181713 original size:19 final size:19
Alignment explanation
Indices: 37181691--37181745 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
37181681 AATAGAGAGT
37181691 TTTGTTAGTAATTTTGTTA
1 TTTGTTAGTAATTTTGTTA
** *
37181710 TTTGAAAGTTATTTTGTTA
1 TTTGTTAGTAATTTTGTTA
* *
37181729 --GGTTATTAATTTTGTTA
1 TTTGTTAGTAATTTTGTTA
37181746 GCTTTTGAAT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
17 12 0.43
19 16 0.57
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (19 bp):
TTTGTTAGTAATTTTGTTA
Found at i:37184770 original size:76 final size:76
Alignment explanation
Indices: 37184676--37184949 Score: 233
Period size: 77 Copynumber: 3.6 Consensus size: 76
37184666 TTATGTAAAT
* * *
37184676 AATACAAAGTTTATTATTTAAATT-ACAAAAAACCCCTAAAATTAATAACTAAAATAGCGAAAAA
1 AATACAAAATTGACTATTTAAATTAACAAAAAACCCCTAAAATTAATAACTAAAAT-GCGAAAAA
* *
37184740 AATCATTACATG
65 AGTCATTACATA
* *** * *
37184752 AATACAAAATTGACTATTTAAATTGCACAAAAAAAATCTAAAATTAATAATTAAAATTGTG-AAA
1 AATACAAAATTGACTATTTAAATT-AACAAAAAACCCCTAAAATTAATAACTAAAA-TGCGAAAA
37184816 AAGTCATTACATA
64 AAGTCATTACATA
* * * * *
37184829 AATATAAAGTTGACTATTTAAATTGCAAAAAAAAAACCTCATAAAAGTAATAACTAAAATGAC-A
1 AATACAAAATTGACTATTTAAATT---AACAAAAAACC-CCTAAAATTAATAACTAAAATG-CGA
*
37184893 AAAAAGTCATTATATA
61 AAAAAGTCATTACATA
* * *
37184909 AATA-TAAA--G-TTATTTAAATT-AC-AAAACCCCCTAAAATTAAT
1 AATACAAAATTGACTATTTAAATTAACAAAAAACCCCTAAAATTAAT
37184950 GGTTTGATAG
Statistics
Matches: 160, Mismatches: 30, Indels: 22
0.75 0.14 0.10
Matches are distributed among these distances:
70 10 0.06
71 6 0.04
72 1 0.01
76 31 0.19
77 37 0.23
78 28 0.17
79 12 0.08
80 35 0.22
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.28
Consensus pattern (76 bp):
AATACAAAATTGACTATTTAAATTAACAAAAAACCCCTAAAATTAATAACTAAAATGCGAAAAAA
GTCATTACATA
Found at i:37184798 original size:78 final size:77
Alignment explanation
Indices: 37184676--37184919 Score: 271
Period size: 77 Copynumber: 3.1 Consensus size: 77
37184666 TTATGTAAAT
* * ***
37184676 AATACAAAGTTTATTATTTAAATT--ACAAAAAACCCCTAAAATTAATAACTAAAATAGCGAAAA
1 AATACAAAGTTGACTATTTAAATTGCACAAAAAAAATCTAAAATTAATAACTAAAAT-GCGAAAA
* *
37184739 AAATCATTACATG
65 AAGTCATTACATA
* * *
37184752 AATACAAAATTGACTATTTAAATTGCACAAAAAAAATCTAAAATTAATAATTAAAATTGTG-AAA
1 AATACAAAGTTGACTATTTAAATTGCACAAAAAAAATCTAAAATTAATAACTAAAA-TGCGAAAA
37184816 AAGTCATTACATA
65 AAGTCATTACATA
* * *
37184829 AATATAAAGTTGACTATTTAAATTGCAAAAAAAAAACCTCATAAAAGTAATAACTAAAATGAC-A
1 AATACAAAGTTGACTATTTAAATTGCACAAAAAAAA--TC-TAAAATTAATAACTAAAATG-CGA
*
37184893 AAAAAGTCATTATATA
62 AAAAAGTCATTACATA
*
37184909 AATATAAAGTT
1 AATACAAAGTT
37184920 ATTTAAATTA
Statistics
Matches: 143, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
76 21 0.15
77 47 0.33
78 28 0.20
79 5 0.03
80 42 0.29
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.28
Consensus pattern (77 bp):
AATACAAAGTTGACTATTTAAATTGCACAAAAAAAATCTAAAATTAATAACTAAAATGCGAAAAA
AGTCATTACATA
Found at i:37184904 original size:80 final size:79
Alignment explanation
Indices: 37184702--37184919 Score: 273
Period size: 80 Copynumber: 2.8 Consensus size: 79
37184692 TTTAAATTAC
* * * * *
37184702 AAAAAACCCCTAAAATTAATAACTAAAAT-AGCGAAAAAAATCATTACATGAATACAAAATTGAC
1 AAAAAACCTCTAAAATTAATAACTAAAATGA-C-AAAAAAGTCATTACATAAATATAAAGTTGAC
*
37184766 TATTTAAATTGCACAA
64 TATTTAAATTGCAAAA
* **
37184782 AAAAAA--TCTAAAATTAATAATTAAAATTG-TGAAAAAGTCATTACATAAATATAAAGTTGACT
1 AAAAAACCTCTAAAATTAATAACTAAAA-TGACAAAAAAGTCATTACATAAATATAAAGTTGACT
37184844 ATTTAAATTGCAAAA
65 ATTTAAATTGCAAAA
* *
37184859 AAAAAACCTCATAAAAGTAATAACTAAAATGACAAAAAAGTCATTATATAAATATAAAGTT
1 AAAAAACCTC-TAAAATTAATAACTAAAATGACAAAAAAGTCATTACATAAATATAAAGTT
37184920 ATTTAAATTA
Statistics
Matches: 118, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
77 47 0.40
78 18 0.15
79 5 0.04
80 48 0.41
ACGTcount: A:0.56, C:0.11, G:0.07, T:0.27
Consensus pattern (79 bp):
AAAAAACCTCTAAAATTAATAACTAAAATGACAAAAAAGTCATTACATAAATATAAAGTTGACTA
TTTAAATTGCAAAA
Found at i:37187557 original size:34 final size:33
Alignment explanation
Indices: 37187519--37187625 Score: 123
Period size: 34 Copynumber: 3.3 Consensus size: 33
37187509 AAAAAACGTT
37187519 TAAATTAGGGTTTATGGTTTTTAAATAGATTAAG
1 TAAATTAGGGTTT-TGGTTTTTAAATAGATTAAG
* * *
37187553 TAAATTAGGGTTTTAGG-GTTT-AA-A-ATAAAT
1 TAAATTAGGGTTTT-GGTTTTTAAATAGATTAAG
*
37187583 TAAATTAAGGTTTTTGGTTTTTAAATAGATTAAG
1 TAAATT-AGGGTTTTGGTTTTTAAATAGATTAAG
37187617 TAAATTAGG
1 TAAATTAGG
37187626 TTTCTAGGGC
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
30 12 0.20
31 11 0.18
32 4 0.07
33 8 0.13
34 25 0.42
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (33 bp):
TAAATTAGGGTTTTGGTTTTTAAATAGATTAAG
Found at i:37187588 original size:30 final size:30
Alignment explanation
Indices: 37187553--37187660 Score: 94
Period size: 30 Copynumber: 3.5 Consensus size: 30
37187543 ATAGATTAAG
37187553 TAAATTAGGGTTTTAGGGTTTAAAATAAAT
1 TAAATTAGGGTTTTAGGGTTTAAAATAAAT
* * * * *
37187583 TAAATTAAGGTTTTTGGTTTTTAAATAGATTAAG
1 TAAATTAGGGTTTTAGG-GTTT-AA-A-ATAAAT
*
37187617 TAAATTA-GGTTTCTAGGGCTTT-AGATAAAT
1 TAAATTAGGGTTT-TAGGG-TTTAAAATAAAT
37187647 TAAATTAGGGTTTT
1 TAAATTAGGGTTTT
37187661 GAGTTTTGGG
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
30 27 0.44
31 8 0.13
32 3 0.05
33 6 0.10
34 17 0.28
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (30 bp):
TAAATTAGGGTTTTAGGGTTTAAAATAAAT
Found at i:37187589 original size:64 final size:63
Alignment explanation
Indices: 37187518--37187667 Score: 223
Period size: 64 Copynumber: 2.3 Consensus size: 63
37187508 TAAAAAACGT
37187518 TTAAATTAGGGTTTATGGTTTTTAAATAGATTAAGTAAATTAGGGTTT-TAGGG-TTTAAAATAA
1 TTAAATTAGGGTTT-TGGTTTTTAAATAGATTAAGTAAATTA-GGTTTCTAGGGCTTT-AAATAA
37187581 A
63 A
* *
37187582 TTAAATTAAGGTTTTTGGTTTTTAAATAGATTAAGTAAATTAGGTTTCTAGGGCTTTAGATAAA
1 TTAAATT-AGGGTTTTGGTTTTTAAATAGATTAAGTAAATTAGGTTTCTAGGGCTTTAAATAAA
37187646 TTAAATTAGGGTTTTGAGTTTT
1 TTAAATTAGGGTTTTG-GTTTT
37187668 GGGTTAAAAA
Statistics
Matches: 79, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
63 13 0.16
64 57 0.72
65 9 0.11
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.45
Consensus pattern (63 bp):
TTAAATTAGGGTTTTGGTTTTTAAATAGATTAAGTAAATTAGGTTTCTAGGGCTTTAAATAAA
Found at i:37187649 original size:34 final size:32
Alignment explanation
Indices: 37187519--37187649 Score: 99
Period size: 34 Copynumber: 4.0 Consensus size: 32
37187509 AAAAAACGTT
* * *
37187519 TAAATTAGGGTTTATGGTTTTTAAATAGATTAAG
1 TAAATTAGGTTTTA-GG-GTTTAAATAAATTAAG
37187553 TAAATTAGGGTTTTAGGGTTTAAAATAAA-T---
1 TAAATTA-GGTTTTAGGGTTT-AAATAAATTAAG
* * *
37187583 TAAATTAAGGTTTTTGGTTTTTAAATAGATTAAG
1 TAAATT-AGGTTTTAGG-GTTTAAATAAATTAAG
*
37187617 TAAATTAGGTTTCTAGGGCTTTAGATAAATTAA
1 TAAATTAGGTTT-TAGGG-TTTAAATAAATTAA
37187650 ATTAGGGTTT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
30 20 0.26
31 5 0.06
33 10 0.13
34 36 0.47
35 6 0.08
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.43
Consensus pattern (32 bp):
TAAATTAGGTTTTAGGGTTTAAATAAATTAAG
Found at i:37188017 original size:126 final size:125
Alignment explanation
Indices: 37187753--37188130 Score: 488
Period size: 126 Copynumber: 3.0 Consensus size: 125
37187743 TTATTTTCAC
* * * * *
37187753 CCTGAAAAATAATTTTGAGAAGACGTTTTTGAACAAATTGTGTCAACAATGCTTCAATCAGGATG
1 CCTGAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATG
* * * * * * *
37187818 CACTATTAGCAAAAATACAGAAAAAAAGCTACCAAGTGGACACTTTTTTGCTATAGTAGTT
66 CACTGTCAGCAAAAATATAG-AAAAAAGCTACCATGTGGACGCTATTTTGCTACAGTAGTT
* *
37187879 CCTGAAAAATAATTTTGAGAAGACGTTTCTGAACAAAGAGTGTCAAAAACACTTCAAGCAGGATG
1 CCTGAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATG
* *
37187944 CACTGTCAGCAAAAATATAGAAAAAAGCTACCATGTAGACGCTCTTTTGCTACAGTAGTT
66 CACTGTCAGCAAAAATATAGAAAAAAGCTACCATGTGGACGCTATTTTGCTACAGTAGTT
*
37188004 CCTGAAAAGATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGAT
1 CCTGAAAA-ATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGAT
* * * * * * * * *
37188069 GTAATGTCATCAAAATTTCTA-AAAAAAACTCCCATATGGACGCTATTTTTCTACAGTAGTT
65 GCACTGTCAGCAAAA-ATATAGAAAAAAGCTACCATGTGGACGCTATTTTGCTACAGTAGTT
37188130 C
1 C
37188131 ATACTTGGCC
Statistics
Matches: 221, Mismatches: 29, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
125 43 0.19
126 175 0.79
127 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (125 bp):
CCTGAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATG
CACTGTCAGCAAAAATATAGAAAAAAGCTACCATGTGGACGCTATTTTGCTACAGTAGTT
Found at i:37191574 original size:17 final size:18
Alignment explanation
Indices: 37191552--37191589 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
37191542 GGAAAAGGGA
* *
37191552 ACATATATGGGTTAGG-T
1 ACATATAAGGGCTAGGAT
37191569 ACATATAAGGGCTAGGAT
1 ACATATAAGGGCTAGGAT
37191587 ACA
1 ACA
37191590 CACCTGGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (18 bp):
ACATATAAGGGCTAGGAT
Found at i:37191676 original size:30 final size:30
Alignment explanation
Indices: 37191642--37191703 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
37191632 GTTGAGGTAT
37191642 TGGGCCCA-GTGATTGTGTGGGCGCTATTGA
1 TGGG-CCAGGTGATTGTGTGGGCGCTATTGA
* *
37191672 TGGGCCAGGTGATTGTGTGGGTGCTGTTGA
1 TGGGCCAGGTGATTGTGTGGGCGCTATTGA
37191702 TG
1 TG
37191704 AGCCTGTGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 3 0.10
30 26 0.90
ACGTcount: A:0.11, C:0.13, G:0.44, T:0.32
Consensus pattern (30 bp):
TGGGCCAGGTGATTGTGTGGGCGCTATTGA
Found at i:37192215 original size:7 final size:7
Alignment explanation
Indices: 37192203--37192228 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37192193 TTATATGCAT
37192203 AATACTA
1 AATACTA
37192210 AATACTA
1 AATACTA
37192217 AATACTA
1 AATACTA
37192224 AATAC
1 AATAC
37192229 GAAACGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:37193414 original size:21 final size:21
Alignment explanation
Indices: 37193381--37193424 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
37193371 TATAAAGAGC
*
37193381 TTTGAGAAATTTAATGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
** *
37193402 TTTGAGAGCTTTAGGGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
37193423 TT
1 TT
37193425 GTAGAGATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.34
Consensus pattern (21 bp):
TTTGAGAAATTTAAGGAGAAA
Found at i:37194095 original size:88 final size:96
Alignment explanation
Indices: 37193973--37194362 Score: 379
Period size: 104 Copynumber: 4.0 Consensus size: 96
37193963 ACTAAACTAT
37193973 AAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTT
1 AAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTT
* * *
37194038 TAAA-TTGCATTA-T-T-AA-A-AAATCATA
66 TAAATTTACATTACTATAAACACAAAACACA
* ***
37194063 AAACACTAACAATTTATA-AA-CTAATCATAAATTACTAACAAAATAACTATAACATT-TTTAAA
1 AAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTT
*
37194125 AAGAATTTACATTACTAATAAATCACAAAACACA
66 TA-AATTTACATTACT-ATAAA-CACAAAACACA
*
37194159 AAACACTAACAATTTATATAACCTAATCATAAATTACTAAAAAAATAACTATAAAATTATTTTTT
1 AAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTT
* * *
37194224 TAAAAAGATTACATTACTAAAAAATCACAAAACCCTAAA
66 T--AAA-TTTACATTACT-ATAAA-CACAAAA--C-ACA
* * *
37194263 TTAAACACTAACAATTTCTA-AA-CTAATCATAAATTACTAATAAAATAACTATAAAAATATTGT
1 --AAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTA-T-T
* * *
37194326 TTTTTATATTTTATATTACTAAAAAATCACAAAACAC
62 TTTTTA-AATTTACATTACT-ATAAA-CACAAAACAC
37194363 TAACATAAAT
Statistics
Matches: 253, Mismatches: 24, Indels: 35
0.81 0.08 0.11
Matches are distributed among these distances:
87 4 0.02
88 37 0.15
89 9 0.04
90 19 0.08
92 1 0.00
93 2 0.01
95 1 0.00
96 24 0.09
97 2 0.01
98 34 0.13
99 3 0.01
100 2 0.01
101 25 0.10
102 1 0.00
103 1 0.00
104 61 0.24
105 4 0.02
106 23 0.09
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (96 bp):
AAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTT
TAAATTTACATTACTATAAACACAAAACACA
Found at i:37194402 original size:65 final size:67
Alignment explanation
Indices: 37194333--37194492 Score: 195
Period size: 69 Copynumber: 2.4 Consensus size: 67
37194323 TGTTTTTTAT
* * *
37194333 ATTTTATATTACTAAAAAATCACAAAACACTAACATAAATTATTAACC-AA-AT-AA-T-TAATA
1 ATTTTACATTAATAAAAAATCACAAAACACTAAC--AAATTA-TAACCTAACATAAATTATAACA
37194393 AAATA
63 AAATA
* *
37194398 ATTTTACATTAATAAAAAATCACAAAACAGTAACAATTTATAACCTAATCATAAATTACTAACAA
1 ATTTTACATTAATAAAAAATCACAAAACACTAACAAATTATAACCTAA-CATAAATTA-TAACAA
37194463 AATA
64 AATA
37194467 ATTTTACATTAATAAAAAATCACAAA
1 ATTTTACATTAATAAAAAATCACAAA
37194493 CTACTAAACT
Statistics
Matches: 83, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
62 5 0.06
63 7 0.08
65 33 0.40
66 2 0.02
67 1 0.01
69 35 0.42
ACGTcount: A:0.56, C:0.13, G:0.01, T:0.30
Consensus pattern (67 bp):
ATTTTACATTAATAAAAAATCACAAAACACTAACAAATTATAACCTAACATAAATTATAACAAAA
TA
Found at i:37194765 original size:18 final size:17
Alignment explanation
Indices: 37194725--37194767 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
37194715 ATACGTTTTT
*
37194725 TTTCTTTTTTTCTTTCT
1 TTTCTTTTTTTCTTTCC
37194742 TCTTCTTTTTTTCTTCTCC
1 T-TTCTTTTTTTCTT-TCC
37194761 TTTCTTT
1 TTTCTTT
37194768 CCTTCTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 19 0.83
19 3 0.13
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTCTTTTTTTCTTTCC
Found at i:37195929 original size:27 final size:28
Alignment explanation
Indices: 37195898--37195966 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
37195888 TATGGTACTC
*
37195898 AGTGTACGAAATATTGAGAATG-CACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
37195925 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
37195953 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
37195967 CGAATGATTC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 20 0.54
28 17 0.46
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:37198022 original size:55 final size:56
Alignment explanation
Indices: 37197935--37198230 Score: 490
Period size: 56 Copynumber: 5.2 Consensus size: 56
37197925 AAGTGAACAT
* *
37197935 AGGCACTGTGTGTGTGAGTTCCGTAACTGAGCACTGTGTGTGCGAGATC-GTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAAC-CAGCACTGTGTGTGCGAGATCGGTTGTTG
37197991 AGGCACTGTGTGT-CGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACC-AGCACTGTGTGTGCGAGATCGGTTGTTG
37198047 AGGCACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTGTGC-AGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTGTGCGAGATCGGTTGTTG
37198102 AGGCACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTGTGCGAGATCGGTTGTTG
*
37198158 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACC-AGCACTGTGTGTGCGAGATCGGTTGTTG
*
37198215 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
37198231 AAATGAGATC
Statistics
Matches: 229, Mismatches: 4, Indels: 11
0.94 0.02 0.05
Matches are distributed among these distances:
55 87 0.38
56 88 0.38
57 47 0.21
59 7 0.03
ACGTcount: A:0.17, C:0.19, G:0.35, T:0.29
Consensus pattern (56 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:37198111 original size:111 final size:112
Alignment explanation
Indices: 37197935--37198230 Score: 490
Period size: 111 Copynumber: 2.6 Consensus size: 112
37197925 AAGTGAACAT
* * *
37197935 AGGCACTGTGTGTGTGAGTTCCGTAACTGAGCACTGTGTGTGCGAGATC-GTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAAC-CAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTG
37197999 TGTGT-CGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
65 TGTGTGCGAGTTCCGTAACC-AGCACTGTGTGTGCGAGATCGGTTGTTG
37198047 AGGCACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTGTGC-AGATCGGTTGTTGAGGCACTGT
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTGT
37198111 GTGTGCGAGTTCCGTAACCAGCACTGTGTGTGCGAGATCGGTTGTTG
66 GTGTGCGAGTTCCGTAACCAGCACTGTGTGTGCGAGATCGGTTGTTG
*
37198158 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGGGGCACTA
1 AGGCACTGTGTGTGCGAGTTCCGTAACC-AGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACT-
37198223 AGTGTGTG
64 -GTGTGTG
37198231 AAATGAGATC
Statistics
Matches: 175, Mismatches: 3, Indels: 9
0.94 0.02 0.05
Matches are distributed among these distances:
110 5 0.03
111 90 0.51
112 54 0.31
113 19 0.11
115 7 0.04
ACGTcount: A:0.17, C:0.19, G:0.35, T:0.29
Consensus pattern (112 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAGCACTGTGTGTGCAAGATCGGTTGTTGAGGCACTGT
GTGTGCGAGTTCCGTAACCAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:37202618 original size:28 final size:28
Alignment explanation
Indices: 37202557--37202618 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
37202547 TCAGTGTACG
*
37202557 AAATATTGAGAATGGCACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
*
37202585 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
37202613 AAATAT
1 AAATAT
37202619 CGAATGATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGTGCA
Found at i:37204647 original size:197 final size:194
Alignment explanation
Indices: 37204301--37204691 Score: 640
Period size: 197 Copynumber: 2.0 Consensus size: 194
37204291 ATAAAAATAA
* * *
37204301 AAAAAATTATTATAAAAAAGGTGGTGACGCCTATGAGAAAGGCTCCTCCAAAAAAATACCAATTT
1 AAAAAATTATTATAAAAAAGATGGTGACACCTATGAAAAAGGCTCCTCCAAAAAAATACCAATTT
37204366 CATAATTAATCCCATTGACAACCCATTTTAGAAATTAATTTTTTTATATTATTTATGTAAATTAA
66 CATAATTAATCCCATTGACAACCCATTTTAGAAATTAATTTTTTTATATTATTTATGTAAATTAA
* * *
37204431 CCTAGATTAGTTTAGACTTTTCTGCCAGCATATCCTATGGCATTATTTCCAATATTATGGAAAT
131 CCTAAATTAGTTTAGACTTTTCTACAAGCATATCCTATGGCATTATTTCCAATATTATGGAAAT
*
37204495 AAAAATTTATTATAAAAAAAGATGGCT-ACACCTATGAAAAAGGCTCCATCCAAAAAACATACCA
1 AAAAAATTATTAT-AAAAAAGATGG-TGACACCTATGAAAAAGGCTCC-TCCAAAAAA-ATACCA
* * *
37204559 ATTTCGTAATTAATCCTATTGACAACCTATTTTAGAAATTAATTTTTTTATATTATTTATGTAAA
62 ATTTCATAATTAATCCCATTGACAACCCATTTTAGAAATTAATTTTTTTATATTATTTATGTAAA
*
37204624 TTAACCTAAATTAGTTTAGACTTTTCTACAAGCATATCTTATGGCATTATTTCCAATATTATGGA
127 TTAACCTAAATTAGTTTAGACTTTTCTACAAGCATATCCTATGGCATTATTTCCAATATTATGGA
37204689 AAT
192 AAT
37204692 TTCCCTCTGA
Statistics
Matches: 182, Mismatches: 11, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
194 12 0.07
195 28 0.15
196 10 0.05
197 132 0.73
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (194 bp):
AAAAAATTATTATAAAAAAGATGGTGACACCTATGAAAAAGGCTCCTCCAAAAAAATACCAATTT
CATAATTAATCCCATTGACAACCCATTTTAGAAATTAATTTTTTTATATTATTTATGTAAATTAA
CCTAAATTAGTTTAGACTTTTCTACAAGCATATCCTATGGCATTATTTCCAATATTATGGAAAT
Found at i:37205236 original size:22 final size:22
Alignment explanation
Indices: 37205211--37205252 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
37205201 TAAAAGAGAC
* *
37205211 ATAATTATTCAATTAATATTTT
1 ATAACTATTCAAGTAATATTTT
37205233 ATAACTATTCAAGTAATATT
1 ATAACTATTCAAGTAATATT
37205253 ACTTGTATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (22 bp):
ATAACTATTCAAGTAATATTTT
Found at i:37207836 original size:26 final size:26
Alignment explanation
Indices: 37207788--37207837 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
37207778 ACCATCAAAT
*
37207788 AAATTTAAGAAAATAACAAAAATAAA
1 AAATTTAAGAAAAGAACAAAAATAAA
*
37207814 AAATTTAAGAATAGAA-AATAAATA
1 AAATTTAAGAAAAGAACAA-AAATA
37207838 TTAAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.10
26 19 0.90
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (26 bp):
AAATTTAAGAAAAGAACAAAAATAAA
Found at i:37208946 original size:11 final size:11
Alignment explanation
Indices: 37208930--37208963 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
37208920 TCCCTTTCCC
37208930 TTTTTCTTTTT
1 TTTTTCTTTTT
37208941 TTTTTCTTTCTT
1 TTTTTCTTT-TT
*
37208953 TTTGTCTTTTT
1 TTTTTCTTTTT
37208964 GATTTGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:37222490 original size:18 final size:18
Alignment explanation
Indices: 37222467--37222506 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
37222457 CCATAGTTTG
*
37222467 TAAG-AAACAAGGAATGTT
1 TAAGAAAACAA-GAAAGTT
37222485 TAAGAAAACAAGAAAGTT
1 TAAGAAAACAAGAAAGTT
37222503 TAAG
1 TAAG
37222507 CTTGGAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.55, C:0.05, G:0.20, T:0.20
Consensus pattern (18 bp):
TAAGAAAACAAGAAAGTT
Found at i:37228842 original size:15 final size:15
Alignment explanation
Indices: 37228822--37228858 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
37228812 GCTATGAAAC
37228822 ACTCACATTTGAGCT
1 ACTCACATTTGAGCT
37228837 ACTCACATTTGAGCT
1 ACTCACATTTGAGCT
37228852 ACTCACA
1 ACTCACA
37228859 GGCCTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (15 bp):
ACTCACATTTGAGCT
Found at i:37234674 original size:28 final size:28
Alignment explanation
Indices: 37234628--37234696 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
37234618 TTTAAAACCC
*
37234628 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
37234655 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
37234683 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
37234697 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:37236525 original size:19 final size:18
Alignment explanation
Indices: 37236488--37236531 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
37236478 ATACATACAG
37236488 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
37236505 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
37236524 TACTAATT
1 TAATAATT
37236532 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:37238940 original size:28 final size:28
Alignment explanation
Indices: 37238894--37238962 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
37238884 TTTAAAACCC
*
37238894 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
37238921 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
37238949 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
37238963 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:37240787 original size:19 final size:18
Alignment explanation
Indices: 37240750--37240793 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
37240740 ATACATACAG
37240750 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
37240767 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
37240786 TACTAATT
1 TAATAATT
37240794 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:37243200 original size:28 final size:28
Alignment explanation
Indices: 37243154--37243222 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
37243144 TTTAAAACCC
*
37243154 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
37243181 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
37243209 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
37243223 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:37245051 original size:19 final size:18
Alignment explanation
Indices: 37245014--37245057 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
37245004 ATACATACAG
37245014 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
37245031 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
37245050 TACTAATT
1 TAATAATT
37245058 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:37247085 original size:20 final size:20
Alignment explanation
Indices: 37247060--37247099 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
37247050 GCAAAACCCT
37247060 ATGAGAATTAGAGAAAGATA
1 ATGAGAATTAGAGAAAGATA
37247080 ATGAGAATTAGAGAAAGATA
1 ATGAGAATTAGAGAAAGATA
37247100 GGTCTTGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.25, T:0.20
Consensus pattern (20 bp):
ATGAGAATTAGAGAAAGATA
Found at i:37251538 original size:21 final size:21
Alignment explanation
Indices: 37251485--37251599 Score: 67
Period size: 21 Copynumber: 5.5 Consensus size: 21
37251475 GAGCTAAACA
37251485 GAAACCCATACA-AGTTGAATG
1 GAAACCCATA-AGAGTTGAATG
* * * *
37251506 GAAGCTCGTAAGAGCTGAATG
1 GAAACCCATAAGAGTTGAATG
* *
37251527 GAAACCCATAAGGGTTAAAT-
1 GAAACCCATAAGAGTTGAATG
* * * *
37251547 AAAAGCTCA-ATAGAGCTGAACG
1 GAAA-CCCATA-AGAGTTGAATG
37251569 GAAACCCATTAAG-GTTGAATG
1 GAAACCCA-TAAGAGTTGAATG
*
37251590 GAAACTCATA
1 GAAACCCATA
37251600 TAAGTTAAAC
Statistics
Matches: 67, Mismatches: 21, Indels: 13
0.66 0.21 0.13
Matches are distributed among these distances:
20 7 0.10
21 54 0.81
22 5 0.07
23 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.19
Consensus pattern (21 bp):
GAAACCCATAAGAGTTGAATG
Found at i:37267132 original size:13 final size:13
Alignment explanation
Indices: 37267114--37267139 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37267104 AAGTAATCGA
37267114 ACACGGGCGTGTC
1 ACACGGGCGTGTC
37267127 ACACGGGCGTGTC
1 ACACGGGCGTGTC
37267140 CCTGTCGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:37269784 original size:93 final size:93
Alignment explanation
Indices: 37269672--37269843 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
37269662 GCCCATAAGT
* *
37269672 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37269737 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
37269765 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37269830 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
37269844 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37269839 original size:46 final size:46
Alignment explanation
Indices: 37269664--37269839 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
37269654 TGTAACCCGC
* * *
37269664 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
37269710 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
37269760 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
37269803 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37269840 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:37272260 original size:30 final size:30
Alignment explanation
Indices: 37272216--37272304 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
37272206 CAAAGATAAC
37272216 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
37272245 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
37272275 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
37272305 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:37272264 original size:15 final size:15
Alignment explanation
Indices: 37272216--37272295 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
37272206 CAAAGATAAC
*
37272216 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37272230 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
37272245 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
37272260 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37272275 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37272290 AAGAAA
1 AAGAAA
37272296 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:37272304 original size:15 final size:15
Alignment explanation
Indices: 37272227--37272304 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
37272217 AGAAAACCGA
37272227 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
37272242 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
37272256 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
37272271 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37272287 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37272302 ATA
1 ATA
37272305 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37275365 original size:93 final size:93
Alignment explanation
Indices: 37275253--37275424 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
37275243 GCCCATAAGT
* *
37275253 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37275318 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
37275346 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37275411 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
37275425 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37275420 original size:46 final size:46
Alignment explanation
Indices: 37275245--37275420 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
37275235 TGTAACCCGC
* * *
37275245 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
37275291 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
37275341 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
37275384 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37275421 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:37279875 original size:39 final size:40
Alignment explanation
Indices: 37279821--37279905 Score: 136
Period size: 39 Copynumber: 2.1 Consensus size: 40
37279811 TGTGAATGAA
37279821 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* * *
37279860 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
37279900 TGTGCG
1 TGTGCG
37279906 GGTTACCATA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 25 0.60
40 17 0.40
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.27
Consensus pattern (40 bp):
TGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:37279903 original size:40 final size:40
Alignment explanation
Indices: 37279821--37279941 Score: 145
Period size: 40 Copynumber: 3.0 Consensus size: 40
37279811 TGTGAATGAA
* *
37279821 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
*
37279860 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
* *** * * *
37279900 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGCGTT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
37279940 TG
1 TG
37279942 AACGAGTAGC
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
39 25 0.36
40 45 0.64
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (40 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCATT
Found at i:37286811 original size:80 final size:80
Alignment explanation
Indices: 37286727--37286875 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
37286717 TATGGTAACC
* * * *
37286727 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
37286791 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
37286807 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
37286872 CCGG
66 CCGG
37286876 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:37286817 original size:40 final size:38
Alignment explanation
Indices: 37286768--37286875 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
37286758 ATCACGATTT
*
37286768 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
37286808 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
37286848 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
37286876 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Done.