Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 124 of 433
Found at i:37904239 original size:20 final size:20
Alignment explanation
Indices: 37904216--37904253 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37904206 CACATCCAAA
*
37904216 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
37904236 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
37904254 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:37910575 original size:28 final size:28
Alignment explanation
Indices: 37910529--37910597 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
37910519 TTTAAAACCC
*
37910529 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
37910556 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
37910584 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
37910598 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:37912245 original size:20 final size:20
Alignment explanation
Indices: 37912222--37912259 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37912212 CACATCCAAA
*
37912222 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
37912242 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
37912260 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:37913557 original size:48 final size:48
Alignment explanation
Indices: 37913406--37913726 Score: 243
Period size: 48 Copynumber: 6.6 Consensus size: 48
37913396 GGTAAAATGT
* * * *
37913406 CGATGCTATGTCTCAGACATGGTCTTATACTGGCTCTCATACATCG-GTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGCATA-AT-GAG-GC
* * * * ** * ** *
37913456 CAATGCCATGTCCCAAACATGGTCTTACACTGACACATAAAACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGCATAATGAGGC
* * * * *
37913504 TGATGCCATGTTCCAAATATGGTCTTACACTGGCTCGCATATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGCATAATGAGGC
* * *
37913552 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGCATAATGAGGC
* * * * * **
37913600 CGATGCCATGTCCCAGACATGGTCTTATACTAGCACACAT-ATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGCATAAT-GAGGC
* ** * * * *
37913648 CGATGCCATGTCCCCGACATGGTCTTACACAAGCACACAT-ATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGCATAAT-GAGGC
*
37913696 TGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
37913727 AGCACACATA
Statistics
Matches: 219, Mismatches: 50, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
47 2 0.01
48 185 0.84
49 1 0.00
50 31 0.14
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCGCATAATGAGGC
Found at i:37913671 original size:144 final size:145
Alignment explanation
Indices: 37913419--37913726 Score: 365
Period size: 144 Copynumber: 2.1 Consensus size: 145
37913409 TGCTATGTCT
*
37913419 CAGACATGGTCTTATACTGGCTCTCATACATCGGTGCCAATGCCATGTCCCAAACATGGTCTTAC
1 CAGACATGGTCTTACACTGGCTCTCATACATCGGTGCCAATGCCATGTCCCAAACATGGTCTTAC
* * * ** * * **
37913484 ACTGACACATAAAACAATGCTGATGCCATGTTCCAAATATGGTCTTACACTGGCTCGCATATTGA
66 ACTGACACATAAAACAA-GCCGATGCCATGTCCCAAACATGGTCTTACACAAGCACACATATCAA
*
37913549 GGCCGATGCCATATCC
130 CGCCGATGCCATATCC
* *
37913565 CAGACATGGTCTTACACTGGCTCTCATA-AT--GTGGCCGATGCCATGTCCCAGACATGGTCTTA
1 CAGACATGGTCTTACACTGGCTCTCATACATCGGT-GCCAATGCCATGTCCCAAACATGGTCTTA
* * **
37913627 TACTAGCACACATATCAAC-A-CCGATGCCATGTCCCCGACATGGTCTTACACAAGCACACATAT
65 CACT-G-ACACATA-AAACAAGCCGATGCCATGTCCCAAACATGGTCTTACACAAGCACACATAT
* *
37913690 CAACGCTGATGCCATGTCC
127 CAACGCCGATGCCATATCC
37913709 CAGACATGGTCTTACACT
1 CAGACATGGTCTTACACT
37913727 AGCACACATA
Statistics
Matches: 139, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
143 2 0.01
144 96 0.69
145 3 0.02
146 35 0.25
147 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (145 bp):
CAGACATGGTCTTACACTGGCTCTCATACATCGGTGCCAATGCCATGTCCCAAACATGGTCTTAC
ACTGACACATAAAACAAGCCGATGCCATGTCCCAAACATGGTCTTACACAAGCACACATATCAAC
GCCGATGCCATATCC
Found at i:37913731 original size:48 final size:48
Alignment explanation
Indices: 37913458--37913741 Score: 295
Period size: 48 Copynumber: 5.9 Consensus size: 48
37913448 ATCGGTGCCA
* * * *
37913458 ATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATAAAACAATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT--ATCAACGCCG
* * * * * * ** *
37913506 ATGCCATGTTCCAAATATGGTCTTACACTGGCTCGCATATTGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
* * * * ***
37913554 ATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAACGCCG
* *
37913602 ATGCCATGTCCCAGACATGGTCTTATACTAGCACACATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
* * *
37913650 ATGCCATGTCCCCGACATGGTCTTACACAAGCACACATATCAACGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
37913698 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
37913742 CAAATGTCTT
Statistics
Matches: 201, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
47 2 0.01
48 192 0.96
49 3 0.01
50 4 0.02
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
Found at i:37913955 original size:31 final size:31
Alignment explanation
Indices: 37913915--37913976 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
37913905 CATATACATA
*
37913915 GCTTTCAATATAATTTCGTGACGCATAACAC
1 GCTTACAATATAATTTCGTGACGCATAACAC
37913946 GCTTACAATATAATTTCGTGACGCATAACAC
1 GCTTACAATATAATTTCGTGACGCATAACAC
37913977 CATCACGTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.31
Consensus pattern (31 bp):
GCTTACAATATAATTTCGTGACGCATAACAC
Found at i:37916426 original size:15 final size:15
Alignment explanation
Indices: 37916393--37916460 Score: 50
Period size: 15 Copynumber: 4.4 Consensus size: 15
37916383 TTATGAAATA
*
37916393 AAGATGACATGAAAACC
1 AAGATGA-A-GAAATCC
37916410 AAGATGAAGAAATCC
1 AAGATGAAGAAATCC
*
37916425 AA-ATTGGAA-AATTCC
1 AAGA-T-GAAGAAATCC
* *
37916440 AAAATAAAGAAATCC
1 AAGATGAAGAAATCC
37916455 AAGATG
1 AAGATG
37916461 CGATACCGTA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
14 3 0.07
15 26 0.63
16 5 0.12
17 7 0.17
ACGTcount: A:0.54, C:0.13, G:0.16, T:0.16
Consensus pattern (15 bp):
AAGATGAAGAAATCC
Found at i:37920166 original size:48 final size:48
Alignment explanation
Indices: 37920041--37920280 Score: 187
Period size: 48 Copynumber: 5.0 Consensus size: 48
37920031 AAAAAGGTAA
* * ** * *
37920041 AATGTCGATGCCATGTCCCGGACATGGTCTTACACTGGCGCTCA-AAC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAACACACATAAC
* * *
37920088 ATCGGTGCCGATGCCATGTCCCAGATATGGTCTTACACTAACACATATAAC
1 A---ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAACACACATAAC
* * * * * **
37920139 AATGCCGATGCCATGTTCTAAACATGGTCTTACACTAGCTCACATATT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAACACACATAAC
* * ** * *
37920187 GAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAA-
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAACACACATAAC
** * * *
37920234 TGTGGCTGATGCCACGTCCCAGACATGGTCTTACACTAGCACACATA
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAACACACATA
37920281 TCAACCAAAT
Statistics
Matches: 153, Mismatches: 35, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
47 1 0.01
48 114 0.75
50 34 0.22
51 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAACACACATAAC
Found at i:37920245 original size:96 final size:96
Alignment explanation
Indices: 37920094--37920281 Score: 236
Period size: 96 Copynumber: 2.0 Consensus size: 96
37920084 AAACATCGGT
* * * *
37920094 GCCGATGCCATGTCCCAGATATGGTCTTACACTAACACATATAACAATGCCGATGCCATGTTCTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACACATATAACAATGCCGATGCCACGTCCCA
*
37920159 AACATGGTCTTACACTAGCTCACATATTGAG
66 AACATGGTCTTACACTAGCACACATATTGAG
** * ** *
37920190 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAA-TGTGGCTGATGCCACGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACACAT-ATAACAAT-GCCGATGCCACGTCC
*
37920253 CAGACATGGTCTTACACTAGCACACATAT
64 CAAACATGGTCTTACACTAGCACACATAT
37920282 CAACCAAATG
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
95 2 0.03
96 76 0.97
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAACACATATAACAATGCCGATGCCACGTCCCA
AACATGGTCTTACACTAGCACACATATTGAG
Found at i:37921986 original size:32 final size:34
Alignment explanation
Indices: 37921940--37922007 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 34
37921930 GTATCTGATA
* *
37921940 TTTTAAATATATATATTTTTATTT-TATTT-TAT
1 TTTTAAATAAATATATGTTTATTTATATTTATAT
*
37921972 TTTTATATAAATATATGTTTATTTATATTTATAT
1 TTTTAAATAAATATATGTTTATTTATATTTATAT
37922006 TT
1 TT
37922008 GTTCGCTAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 21 0.68
33 5 0.16
34 5 0.16
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.66
Consensus pattern (34 bp):
TTTTAAATAAATATATGTTTATTTATATTTATAT
Found at i:37922278 original size:84 final size:84
Alignment explanation
Indices: 37922133--37922419 Score: 371
Period size: 84 Copynumber: 3.4 Consensus size: 84
37922123 GAATAAAAAA
* ** ** * * * *
37922133 TAAAATTGAATAATTCTATTTTAAGATTTATTTTTGTTGTCCAATAGATTTTATTCTATTTTGAT
1 TAAAATTGAATAATTCTGTTTTGGGATTTATTCCTGTAGTTCAACAGATTTTATTCAATTTTGAT
* *
37922198 TTTATTTCCAAATGAGAAT
66 TTTGTTTCCAAACGAGAAT
*
37922217 TAAAATTGAATAATTCTGTTTTGGGATTTATTCCTGTAGTTCAACAGATTTTATTCCATTTTGAT
1 TAAAATTGAATAATTCTGTTTTGGGATTTATTCCTGTAGTTCAACAGATTTTATTCAATTTTGAT
*
37922282 TTTGTTTCCAAAGGAGAAT
66 TTTGTTTCCAAACGAGAAT
* * *
37922301 TAAAATTGAATAATTCTGTTTTGGGATTTATTCCTGTCGTTTAACAGATTTTATTCAATTTTGAC
1 TAAAATTGAATAATTCTGTTTTGGGATTTATTCCTGTAGTTCAACAGATTTTATTCAATTTTGAT
*
37922366 TTTGTTTCCAAACAAG-AT
66 TTTGTTTCCAAACGAGAAT
* * * *
37922384 T-TAATTAAATAATTTTGTTTTGGGATTTAATCCTGT
1 TAAAATTGAATAATTCTGTTTTGGGATTTATTCCTGT
37922420 TGTCAACGTA
Statistics
Matches: 182, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
82 31 0.17
83 3 0.02
84 148 0.81
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.48
Consensus pattern (84 bp):
TAAAATTGAATAATTCTGTTTTGGGATTTATTCCTGTAGTTCAACAGATTTTATTCAATTTTGAT
TTTGTTTCCAAACGAGAAT
Found at i:37927432 original size:46 final size:45
Alignment explanation
Indices: 37927288--37927498 Score: 192
Period size: 46 Copynumber: 4.5 Consensus size: 45
37927278 TGTGTGAGCT
* * * **
37927288 AGTGTAAGACATGTCTAGGACATGCATTGGCCACGTTATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AAGCC
* * * * *
37927334 AGTGTAAGACCATGTCTGGTACATGGCATCGGCATTGAGA-CAAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAA--GCC
37927382 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AAGCC
* * * * *
37927428 AGTGTAAGACATGTTTGGGACATGCGTTGG-CTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGA-AGCC
37927474 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
37927499 GTATCGACAC
Statistics
Matches: 135, Mismatches: 21, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
45 3 0.02
46 71 0.53
47 39 0.29
48 22 0.16
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAAGCC
Found at i:37940627 original size:48 final size:48
Alignment explanation
Indices: 37940556--37940662 Score: 126
Period size: 48 Copynumber: 2.2 Consensus size: 48
37940546 TGCTTATCTG
*** * *
37940556 GGACATGGCATCGGTGATGATATGTGTG-CCAGTGTAAGACCATGTCTA
1 GGACATGGCATCAACGATGATATGTGGGTCCA-TGTAAGACCATGTCGA
* * *
37940604 GGACATGGCATCAACGATGATATGTGGGTTCATGTAAGGCCATGTCGG
1 GGACATGGCATCAACGATGATATGTGGGTCCATGTAAGACCATGTCGA
37940652 GGACATGGCAT
1 GGACATGGCAT
37940663 TGATACTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
48 48 0.96
49 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (48 bp):
GGACATGGCATCAACGATGATATGTGGGTCCATGTAAGACCATGTCGA
Found at i:37942846 original size:6 final size:6
Alignment explanation
Indices: 37942837--37942861 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
37942827 AATATTTTTT
37942837 TATTTA TATTTA TATTTA TATTTA T
1 TATTTA TATTTA TATTTA TATTTA T
37942862 TCACTAACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATTTA
Found at i:37942849 original size:32 final size:33
Alignment explanation
Indices: 37942789--37942857 Score: 106
Period size: 32 Copynumber: 2.1 Consensus size: 33
37942779 GAAATTTTAA
*
37942789 ATATAAATATTTATTTTATTTTATTTTATTTTT
1 ATATAAATATTTATTTTATTTTATTTTATATTT
37942822 ATATAAATATTT-TTTTA-TTTATATTTATATTT
1 ATATAAATATTTATTTTATTTTAT-TTTATATTT
37942854 ATAT
1 ATAT
37942858 TTATTCACTA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 5 0.15
32 17 0.50
33 12 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (33 bp):
ATATAAATATTTATTTTATTTTATTTTATATTT
Found at i:37942854 original size:12 final size:12
Alignment explanation
Indices: 37942795--37942861 Score: 59
Period size: 12 Copynumber: 5.7 Consensus size: 12
37942785 TTAAATATAA
37942795 ATATTTAT-TTT
1 ATATTTATATTT
37942806 AT-TTTAT-TTT
1 ATATTTATATTT
* *
37942816 ATTTTTATATAAAT
1 ATATTTATAT--TT
* *
37942830 ATTTTTTTATTT
1 ATATTTATATTT
37942842 ATATTTATATTT
1 ATATTTATATTT
37942854 ATATTTAT
1 ATATTTAT
37942862 TCACTAACGT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
10 10 0.21
11 7 0.15
12 20 0.43
14 10 0.21
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
ATATTTATATTT
Found at i:37942857 original size:26 final size:28
Alignment explanation
Indices: 37942795--37942862 Score: 88
Period size: 26 Copynumber: 2.5 Consensus size: 28
37942785 TTAAATATAA
*
37942795 ATATTTAT-TTTATTTTATTTTATTTTT
1 ATATTTATATTTATTTTATTTTATATTT
**
37942822 ATATAAATATTT-TTTTA-TTTATATTT
1 ATATTTATATTTATTTTATTTTATATTT
37942848 ATATTTATATTTATT
1 ATATTTATATTTATT
37942863 CACTAACGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
26 18 0.53
27 13 0.38
28 3 0.09
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (28 bp):
ATATTTATATTTATTTTATTTTATATTT
Found at i:37944433 original size:131 final size:131
Alignment explanation
Indices: 37944194--37944454 Score: 362
Period size: 131 Copynumber: 2.0 Consensus size: 131
37944184 ACCCAGTTTT
* *
37944194 AGCTCGCCAATGCTAATACTTCACCAAGATTAAGGACCTCACTGGCTTATAACATACTCTAGAAA
1 AGCTCGCCAATGCTAATACTTCACCAAGATTAAGGACCTCACTGACTTATAACATACTCTACAAA
* * * * *
37944259 TAAAAGCTTATCCCCGAGCTTCACCAAGTCAAGCAATCAAGTTTCCTTTCAGCATGGCGACATAT
66 TAAAAGCTTATCCCCAAGCCTCACCAAATCAAGCAATCAAGTTTCCTTTCAACATGGCAACATAT
37944324 G
131 G
* * * * * *
37944325 AGCTTGCCAATGCTAATACTTCACCAAGATTGAGGACCTCATTGACTTATAGCATATTTTACAAA
1 AGCTCGCCAATGCTAATACTTCACCAAGATTAAGGACCTCACTGACTTATAACATACTCTACAAA
* * *
37944390 T-AGAGACTTATCCCTAAGCCTCGCCAAATCAAGCAATCAAGTTTCCTTTCAACATGGCAACATA
66 TAAAAG-CTTATCCCCAAGCCTCACCAAATCAAGCAATCAAGTTTCCTTTCAACATGGCAACATA
37944454 T
130 T
37944455 AAACCTCTAT
Statistics
Matches: 113, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
130 3 0.03
131 110 0.97
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (131 bp):
AGCTCGCCAATGCTAATACTTCACCAAGATTAAGGACCTCACTGACTTATAACATACTCTACAAA
TAAAAGCTTATCCCCAAGCCTCACCAAATCAAGCAATCAAGTTTCCTTTCAACATGGCAACATAT
G
Found at i:37950737 original size:42 final size:42
Alignment explanation
Indices: 37950629--37950739 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 42
37950619 ATATATCAGT
* * * **
37950629 GAAGCTCCCCACATGAGCTTAAGTGACAAGCTGTGTATTATT
1 GAAGCTCCCCACAAGAGCTTAAGTGACAAACTATGTATTAGC
*
37950671 GAATCTCCCCCACAAGAGCTTAAGTGACAAACTATGTATTAGC
1 GAAGCT-CCCCACAAGAGCTTAAGTGACAAACTATGTATTAGC
***
37950714 GAAGCTCCCCATGCGAGCTTAAGTGA
1 GAAGCTCCCCACAAGAGCTTAAGTGA
37950740 TTGTGCTCCT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 22 0.38
43 36 0.62
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (42 bp):
GAAGCTCCCCACAAGAGCTTAAGTGACAAACTATGTATTAGC
Found at i:37954263 original size:48 final size:46
Alignment explanation
Indices: 37954205--37954360 Score: 154
Period size: 48 Copynumber: 3.3 Consensus size: 46
37954195 AAAGCATGAG
* *
37954205 AGCCAGTGTAAGACATGTCTGGGACATGCGTCGGTCTCGAGATATTTA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATA--TA
* * *
37954253 AGCCAGTGTAAGACATGTCTGTGACATGCATC-GACATTGAGACGA-A
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGAC-TCGAGA-TATA
* * * *
37954299 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCTCGATATACA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGG--ACTCGAGATATA
*
37954347 AGCTAGTGTAAGAC
1 AGCCAGTGTAAGAC
37954361 CTATCTAAGA
Statistics
Matches: 91, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
46 31 0.34
47 4 0.04
48 54 0.59
49 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATATA
Found at i:37954452 original size:49 final size:49
Alignment explanation
Indices: 37954392--37954503 Score: 152
Period size: 49 Copynumber: 2.3 Consensus size: 49
37954382 CTTGTTGTGT
* *
37954392 GCCAGTGTAAGACCTATTCGGGACATGGCATCGACATCGATAGATGAGA
1 GCCAGTGTAAGACCTATTCGGGACATGGCACCGACATCGATAGATGAAA
* * * * * *
37954441 GCCAGTGTAAGAACTGTTTGGGACATGGCACCGACCTCGTTATATGAAA
1 GCCAGTGTAAGACCTATTCGGGACATGGCACCGACATCGATAGATGAAA
37954490 GCCAGTGTAAGACC
1 GCCAGTGTAAGACC
37954504 ATGTCTAGGA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
49 54 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.21
Consensus pattern (49 bp):
GCCAGTGTAAGACCTATTCGGGACATGGCACCGACATCGATAGATGAAA
Found at i:37961074 original size:10 final size:10
Alignment explanation
Indices: 37961042--37961178 Score: 65
Period size: 10 Copynumber: 13.8 Consensus size: 10
37961032 GGCATGTGAC
*
37961042 AAAAAATAAT
1 AAAAATTAAT
*
37961052 AATAAAATAAT
1 AA-AAATTAAT
37961063 AAAAATTAAT
1 AAAAATTAAT
37961073 --AAATTAAT
1 AAAAATTAAT
**
37961081 AAATTTTAAT
1 AAAAATTAAT
37961091 AAAAA--AATT
1 AAAAATTAA-T
*
37961100 AAAAATTAGAA
1 AAAAATTA-AT
37961111 AAAAATATAA-
1 AAAAAT-TAAT
* *
37961121 AAAATTGTAAG
1 AAAAAT-TAAT
*
37961132 AAAAATT-GT
1 AAAAATTAAT
* *
37961141 AAAATTTTAT
1 AAAAATTAAT
37961151 AAAAATTGTAA-
1 AAAAA-T-TAAT
37961162 AAAAATT-AT
1 AAAAATTAAT
37961171 AAAAATTA
1 AAAAATTA
37961179 TCATACAAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
8 11 0.11
9 20 0.20
10 33 0.34
11 29 0.30
12 5 0.05
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (10 bp):
AAAAATTAAT
Found at i:37961074 original size:18 final size:18
Alignment explanation
Indices: 37961051--37961107 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
37961041 CAAAAAATAA
37961051 TAATAAAATAATAAAAAT
1 TAATAAAATAATAAAAAT
* **
37961069 TAATAAATTAATAAATTT
1 TAATAAAATAATAAAAAT
*
37961087 TAATAAAAAAATTAAAAAT
1 TAATAAAATAA-TAAAAAT
37961106 TA
1 TA
37961108 GAAAAAAATA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 24 0.77
19 7 0.23
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAATAAAATAATAAAAAT
Found at i:37961144 original size:20 final size:19
Alignment explanation
Indices: 37961121--37961163 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
37961111 AAAAATATAA
37961121 AAAATTGTAAGAAAAATTGT
1 AAAATT-TAAGAAAAATTGT
* *
37961141 AAAATTTTATAAAAATTGT
1 AAAATTTAAGAAAAATTGT
37961160 AAAA
1 AAAA
37961164 AAATTATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (19 bp):
AAAATTTAAGAAAAATTGT
Found at i:37962300 original size:15 final size:14
Alignment explanation
Indices: 37962280--37962309 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
37962270 AATTTTAATT
37962280 GGAAATAAAATTAAA
1 GGAAATAAAA-TAAA
37962295 GGAAATAAAATAAA
1 GGAAATAAAATAAA
37962309 G
1 G
37962310 AAAAGGGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (14 bp):
GGAAATAAAATAAA
Found at i:37965964 original size:3 final size:3
Alignment explanation
Indices: 37965956--37965994 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
37965946 CTACATGATT
*
37965956 TTC TTC TTC TTC TTC TTC TTC CTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
37965995 AATAGCGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:37968918 original size:46 final size:46
Alignment explanation
Indices: 37968866--37968956 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
37968856 AGTATATTCG
* *
37968866 AACTCATATTTTTTTGTATTAATAATAATAATACCAATATCAATCA
1 AACTCATATTTTTTTATACTAATAATAATAATACCAATATCAATCA
37968912 AACTCATATTTTTTTATACTAATAATAATAATACCAATATCAATC
1 AACTCATATTTTTTTATACTAATAATAATAATACCAATATCAATC
37968957 GAGTTAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.44, C:0.14, G:0.01, T:0.41
Consensus pattern (46 bp):
AACTCATATTTTTTTATACTAATAATAATAATACCAATATCAATCA
Found at i:37968981 original size:46 final size:47
Alignment explanation
Indices: 37968884--37968982 Score: 121
Period size: 46 Copynumber: 2.1 Consensus size: 47
37968874 TTTTTTTGTA
* * **
37968884 TTAATAATAATAATACCAATATCAATCAAACTCATATTTTTTTATAC
1 TTAATAATAATAATACCAATATCAATCAAACTAAAATTTAATTATAC
* **
37968931 -TAATAATAATAATACCAATATCAATCGAGTTAAAATTTAATTA-AC
1 TTAATAATAATAATACCAATATCAATCAAACTAAAATTTAATTATAC
37968976 TTAATAA
1 TTAATAA
37968983 ATATATTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
45 2 0.05
46 42 0.95
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.37
Consensus pattern (47 bp):
TTAATAATAATAATACCAATATCAATCAAACTAAAATTTAATTATAC
Found at i:37969503 original size:21 final size:22
Alignment explanation
Indices: 37969463--37969504 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
37969453 ATTTTTAATA
37969463 TTTAAAAATATTCATAAATTTT
1 TTTAAAAATATTCATAAATTTT
* *
37969485 TTTAAAACTATT-ATTAATTT
1 TTTAAAAATATTCATAAATTT
37969505 ATTCTTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTAAAAATATTCATAAATTTT
Found at i:37970119 original size:4 final size:4
Alignment explanation
Indices: 37970106--37970179 Score: 141
Period size: 4 Copynumber: 18.8 Consensus size: 4
37970096 CTTGAGGAGT
37970106 TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
37970153 TGTA TGTA TGTA TGTA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGT
37970180 TTTCTATGAA
Statistics
Matches: 69, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 3 0.04
4 66 0.96
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:37970551 original size:45 final size:45
Alignment explanation
Indices: 37970447--37970551 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
37970437 ATGCTCACCG
* * *
37970447 GGATAGTAAACACGAAGGCCAATATGGTGAATACGTAGTCCGTCA
1 GGATAGTAAACATGAAGGCCAATATGGCGAATACGTAGTCCATCA
*
37970492 GGATAGTAAACATGAAGGCCAATGTGGCGAATACGTAGTCCATCA
1 GGATAGTAAACATGAAGGCCAATATGGCGAATACGTAGTCCATCA
* *
37970537 GGATTGTAACCATGA
1 GGATAGTAAACATGA
37970552 GGTTCACCAG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (45 bp):
GGATAGTAAACATGAAGGCCAATATGGCGAATACGTAGTCCATCA
Found at i:37970810 original size:25 final size:25
Alignment explanation
Indices: 37970780--37970905 Score: 146
Period size: 25 Copynumber: 5.0 Consensus size: 25
37970770 CCAAACCTAA
*
37970780 CCTTTGTGGC-AGATTATTTGTAAAG
1 CCTTTGTGGCGAG-TTATCTGTAAAG
37970805 CCTTTGTGGCGAGTTATCTGTAAAG
1 CCTTTGTGGCGAGTTATCTGTAAAG
*
37970830 CCTTTGTGGCGAGTTAACTGTAAAG
1 CCTTTGTGGCGAGTTATCTGTAAAG
* * * *
37970855 GCTATATGGCGAGCTATCTGTAAAG
1 CCTTTGTGGCGAGTTATCTGTAAAG
* ** *
37970880 CATTTGTGGAAAATTATCTGTAAAG
1 CCTTTGTGGCGAGTTATCTGTAAAG
37970905 C
1 C
37970906 TCTTGGGGTG
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
25 83 0.98
26 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.34
Consensus pattern (25 bp):
CCTTTGTGGCGAGTTATCTGTAAAG
Found at i:37970839 original size:50 final size:50
Alignment explanation
Indices: 37970780--37970990 Score: 160
Period size: 50 Copynumber: 4.2 Consensus size: 50
37970770 CCAAACCTAA
*
37970780 CCTTTGTGGCAGATTATTTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAG
1 CCTTTGTGGCAGATTATCTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAG
* * * * *
37970830 CCTTTGTGGC-GAGTTAACTGTAAAGGCTATATGGCGAGCTATCTGTAAAG
1 CCTTTGTGGCAGA-TTATCTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAG
* * * * * * **
37970880 CATTTGTGGAAAATTATCTGTAAAG-CTCTTGGGGTGAATTATCTAAAAAG
1 CCTTTGTGGCAGATTATCTGTAAAGCCT-TTGTGGCGAGTTATCTGTAAAG
* * * * * *
37970930 CCTATGTGACATATTAT-TCATAAAGCCTTAGTGGCAAAGTTATCTG-AGAAG
1 CCTTTGTGGCAGATTATCT-GTAAAGCCTTTGTGGC-GAGTTATCTGTA-AAG
*
37970981 CCCTTGTGGC
1 CCTTTGTGGC
37970991 GAGTCATGTG
Statistics
Matches: 121, Mismatches: 33, Indels: 13
0.72 0.20 0.08
Matches are distributed among these distances:
49 5 0.04
50 96 0.79
51 20 0.17
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.33
Consensus pattern (50 bp):
CCTTTGTGGCAGATTATCTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAG
Found at i:37970919 original size:25 final size:25
Alignment explanation
Indices: 37970869--37970923 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
37970859 TATGGCGAGC
*
37970869 TATCTGTAAAGCATTTGTGGAAAAT
1 TATCTGTAAAGCATTTGGGGAAAAT
**
37970894 TATCTGTAAAGC-TCTTGGGGTGAAT
1 TATCTGTAAAGCAT-TTGGGGAAAAT
37970919 TATCT
1 TATCT
37970924 AAAAAGCCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (25 bp):
TATCTGTAAAGCATTTGGGGAAAAT
Found at i:37972491 original size:32 final size:32
Alignment explanation
Indices: 37972446--37972522 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
37972436 TAATATTTTT
* *
37972446 TAAAGGTTGATTAATACAAA-TGCTTGAAGAAA
1 TAAAGATTGATTAATACAAACCG-TTGAAGAAA
* *
37972478 TTAGGATTGATTAATACAAACCGTTGAAGAAA
1 TAAAGATTGATTAATACAAACCGTTGAAGAAA
37972510 TAAAGATTGATTA
1 TAAAGATTGATTA
37972523 CAATTTTAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
32 37 0.97
33 1 0.03
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.30
Consensus pattern (32 bp):
TAAAGATTGATTAATACAAACCGTTGAAGAAA
Found at i:37978030 original size:43 final size:43
Alignment explanation
Indices: 37977952--37978053 Score: 152
Period size: 43 Copynumber: 2.4 Consensus size: 43
37977942 GCCACTATCT
* * * *
37977952 CAGACAGGGTCTTACACGAAATCGATTAACGATGCCAATGTCC
1 CAGACATGGTCTTACACGAAATCCAATAACAATGCCAATGTCC
37977995 CAGACATGGTCTTACACGAAATCTCAAT-ACAATGCCAATGTCC
1 CAGACATGGTCTTACACGAAATC-CAATAACAATGCCAATGTCC
37978038 CAGACATGGTCTTACA
1 CAGACATGGTCTTACA
37978054 TGTATTCACA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 52 0.96
44 2 0.04
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
CAGACATGGTCTTACACGAAATCCAATAACAATGCCAATGTCC
Found at i:37979815 original size:40 final size:40
Alignment explanation
Indices: 37979771--37979847 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
37979761 TTAGTGCCAC
* *
37979771 ATATAGCCGAAGTTAT-TCCAATTCGCACACTAAGTGCTTT
1 ATATAACCGAAGCTATCTCCAA-TCGCACACTAAGTGCTTT
* * *
37979811 ATATAACCTAAGCTATCTCGAATCGCACGCTAAGTGC
1 ATATAACCGAAGCTATCTCCAATCGCACACTAAGTGC
37979848 CAAACATAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 27 0.87
41 4 0.13
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (40 bp):
ATATAACCGAAGCTATCTCCAATCGCACACTAAGTGCTTT
Found at i:37983046 original size:26 final size:26
Alignment explanation
Indices: 37983017--37983124 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
37983007 TCATACAAAT
37983017 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
37983043 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37983069 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37983095 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37983121 TGAT
1 TGAT
37983125 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:37984751 original size:27 final size:27
Alignment explanation
Indices: 37984711--37984845 Score: 126
Period size: 27 Copynumber: 5.2 Consensus size: 27
37984701 AGGAAGCGTC
* *
37984711 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
37984738 CTGGTGGCTCTGCCAC-A-TA--T-AT
1 CTGGTGGCTCTGCCACAATTATCTGAT
** *
37984760 CT-GTCCACTATGCCACAATTATCTGAT
1 CTGGT-GGCTCTGCCACAATTATCTGAT
*
37984787 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
37984814 CTGGTGGCTCTGCCACAA-TAT-TGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
37984840 CTGGTG
1 CTGGTG
37984846 ACTTCGTCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 21
0.75 0.08 0.18
Matches are distributed among these distances:
21 2 0.02
22 12 0.13
23 2 0.02
24 2 0.02
25 4 0.04
26 14 0.16
27 50 0.56
28 3 0.03
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:37984790 original size:49 final size:49
Alignment explanation
Indices: 37984718--37984812 Score: 181
Period size: 49 Copynumber: 1.9 Consensus size: 49
37984708 GTCCTGGTGG
37984718 CTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCA
1 CTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCA
*
37984767 CTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGT
1 CTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGT
37984813 TCTGGTGGCT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (49 bp):
CTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCA
Found at i:37990098 original size:25 final size:26
Alignment explanation
Indices: 37990057--37990161 Score: 189
Period size: 25 Copynumber: 4.2 Consensus size: 26
37990047 TGATACAAAT
37990057 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37990083 TGATAAT-GGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
37990107 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37990133 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
37990158 TGAT
1 TGAT
37990162 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
24 9 0.12
25 52 0.68
26 16 0.21
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:37991344 original size:8 final size:8
Alignment explanation
Indices: 37991331--37991362 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
37991321 CTAGATTGGC
37991331 AAAAGCCG
1 AAAAGCCG
37991339 AAAAGCCG
1 AAAAGCCG
*
37991347 AAATGCCG
1 AAAAGCCG
37991355 AAAAGCCG
1 AAAAGCCG
37991363 GTATTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:37991793 original size:27 final size:27
Alignment explanation
Indices: 37991751--37991891 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
37991741 AGGTAGAGTC
*
37991751 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
37991778 CTGGTGGCTCTACCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
37991804 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
37991832 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
37991859 CTGGTGGCTCTGCCACAA-TATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
37991886 CTGGTG
1 CTGGTG
37991892 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
26 10 0.10
27 85 0.86
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:37991830 original size:54 final size:54
Alignment explanation
Indices: 37991748--37991891 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
37991738 TGGAGGTAGA
37991748 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
*
37991802 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
* * *
37991856 GTTCTGGTGGCTCTGCCACAA-TATTTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
37991892 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
Found at i:37991903 original size:81 final size:80
Alignment explanation
Indices: 37991751--37991909 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 80
37991741 AGGTAGAGTC
*
37991751 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTCCTGGTGACTAT
37991816 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * * *
37991832 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATTTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTACCACATATATCTGT-CCTGGTGACT
*
37991895 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
37991910 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
80 16 0.24
81 52 0.76
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:37998816 original size:46 final size:46
Alignment explanation
Indices: 37998714--37998935 Score: 238
Period size: 46 Copynumber: 4.8 Consensus size: 46
37998704 GGGGTAGGAT
37998714 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG--CTCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AG
*
37998760 GCAGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAG
* * * *
37998806 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
* * *
37998852 GCCGATGCCATGTCCCATACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAG
* * * *
37998900 GTCGACGCATGTCCTAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
37998936 ACAATAACCC
Statistics
Matches: 150, Mismatches: 18, Indels: 16
0.82 0.10 0.09
Matches are distributed among these distances:
44 12 0.08
45 16 0.11
46 73 0.49
47 26 0.17
48 22 0.15
49 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
Found at i:37998910 original size:94 final size:90
Alignment explanation
Indices: 37998722--37998936 Score: 249
Period size: 94 Copynumber: 2.3 Consensus size: 90
37998712 ATGCCGATGC
*
37998722 CATGTCCCAGACATGGTCTTACACTGGCTCATCTCGTAGCAGATGCATGTCCCAGACATGTCTTA
1 CATGTCCCAGACAT-GTCTTACACTAGCTCATCTCGTAGCAGATGCATGTCCCAGACATGTCTTA
* *
37998787 CACTGGCTTACATCTCGAGGCCGATG
65 CACTGGCTTACATATCGAGGCCGACG
* *
37998813 CATGTCCCAGACATGTCTTACACTAGCTC-TCGTC-TCAATGCCGATGCCATGTCCCATACATGG
1 CATGTCCCAGACATGTCTTACACTAGCTCATC-TCGT--A-GCAGATG-CATGTCCCAGACAT-G
* *
37998876 TCTTACACTGGCTCT-CATAAT-GTGGTCGACG
60 TCTTACACTGGCT-TACAT-ATCGAGGCCGACG
*
37998907 CATGTCCTAGACATGTCTTACACTAGCTCA
1 CATGTCCCAGACATGTCTTACACTAGCTCA
37998937 CAATAACCCG
Statistics
Matches: 107, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
89 3 0.03
90 16 0.15
91 15 0.14
92 6 0.06
93 13 0.12
94 52 0.49
95 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (90 bp):
CATGTCCCAGACATGTCTTACACTAGCTCATCTCGTAGCAGATGCATGTCCCAGACATGTCTTAC
ACTGGCTTACATATCGAGGCCGACG
Found at i:38003152 original size:40 final size:40
Alignment explanation
Indices: 38003093--38003261 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
38003083 CGGGACTTTA
* * *
38003093 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
38003133 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
38003173 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
38003213 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
38003253 CCCGGATAT
1 CCCGGATAT
38003262 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:38009764 original size:46 final size:46
Alignment explanation
Indices: 38009662--38009883 Score: 238
Period size: 46 Copynumber: 4.8 Consensus size: 46
38009652 GGGGTAGGAT
38009662 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG--CTCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AG
*
38009708 GCAGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAG
* * * * * *
38009754 GTCGATGCATGTCACAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
* * *
38009800 GCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAG
* *
38009848 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
38009884 ACAATAACCT
Statistics
Matches: 148, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 12 0.08
45 16 0.11
46 69 0.47
47 27 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
Found at i:38009854 original size:94 final size:89
Alignment explanation
Indices: 38009662--38009884 Score: 247
Period size: 94 Copynumber: 2.4 Consensus size: 89
38009652 GGGGTAGGAT
*
38009662 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCGTAGCAGATGCATGTCCCAGAC
1 GCCGATG-CATGT-CCAGACAT-GTCTTACACTAGCTCATCTCGTAGCAGATGCATGTCCCAGAC
*
38009727 ATGTCTTACACTGGCTTACATCTCGAG
63 ATGTCTTACACTGGCTTACATATCGAG
* *
38009754 GTCGATGCATGTCACAGACATGTCTTACACTAGCTC-TCGTC-TCAATGCCGATGCCATGTCCCA
1 GCCGATGCATGTC-CAGACATGTCTTACACTAGCTCATC-TCGT--A-GCAGATG-CATGTCCCA
* *
38009817 GACATGGTCTTATACTGGCTCT-CATAAT-GTG
60 GACAT-GTCTTACACTGGCT-TACAT-ATCGAG
38009848 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTCA
1 GCCGATGCATGTCC-AGACATGTCTTACACTAGCTCA
38009885 CAATAACCTG
Statistics
Matches: 113, Mismatches: 7, Indels: 19
0.81 0.05 0.14
Matches are distributed among these distances:
89 3 0.03
90 17 0.15
91 13 0.12
92 12 0.11
93 15 0.13
94 51 0.45
95 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (89 bp):
GCCGATGCATGTCCAGACATGTCTTACACTAGCTCATCTCGTAGCAGATGCATGTCCCAGACATG
TCTTACACTGGCTTACATATCGAG
Found at i:38015600 original size:29 final size:29
Alignment explanation
Indices: 38015568--38015667 Score: 109
Period size: 29 Copynumber: 3.5 Consensus size: 29
38015558 ATAGTGAATC
* *
38015568 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTCAACT
38015597 CGCACACTTAGTGCTATAGAA---TCAAACT
1 CGCACACTTAGTGCTATA-AATTTTC-AACT
* *
38015625 CGCACACTTAGTGCTGTACAATTTT-AACC
1 CGCACACTTAGTGCTATA-AATTTTCAACT
38015654 CGCACACTTAGTGC
1 CGCACACTTAGTGC
38015668 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
27 2 0.03
28 22 0.36
29 35 0.57
30 1 0.02
31 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATAAATTTTCAACT
Found at i:38023483 original size:29 final size:30
Alignment explanation
Indices: 38023450--38023523 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
38023440 TATAGTGAAT
* * *
38023450 CCGCACACTTAGTGCTATA-TATTTTCAGC
1 CCGCACACTTAGTGCTATACAATTTTAAAC
* *
38023479 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATACAATTTTAAAC
38023509 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
38023524 CAATCTTGTC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
29 17 0.45
30 21 0.55
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (30 bp):
CCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:38030247 original size:30 final size:30
Alignment explanation
Indices: 38030211--38030311 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
38030201 GACAAGATTG
* * *
38030211 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
38030241 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
38030269 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
38030298 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
38030312 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:38030323 original size:29 final size:28
Alignment explanation
Indices: 38030240--38030315 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
38030230 AAAATTGTAC
* *
38030240 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
38030268 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
38030297 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
38030316 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:38043017 original size:80 final size:80
Alignment explanation
Indices: 38042933--38043081 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
38042923 TATGGTAACC
* * * *
38042933 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
38042997 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
38043013 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
38043078 CCGG
66 CCGG
38043082 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:38043023 original size:40 final size:38
Alignment explanation
Indices: 38042974--38043081 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
38042964 ATCACGATTT
*
38042974 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
38043014 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
38043054 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
38043082 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:38047211 original size:39 final size:39
Alignment explanation
Indices: 38047157--38047308 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
38047147 GAATGTTCGA
38047157 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
*
38047196 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCG-AGT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* *
38047234 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* **
38047273 GTGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
38047309 GGTTACCATA
Statistics
Matches: 103, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 36 0.35
39 51 0.50
40 16 0.16
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
Found at i:38047228 original size:30 final size:30
Alignment explanation
Indices: 38047192--38047266 Score: 78
Period size: 38 Copynumber: 2.2 Consensus size: 30
38047182 CAATTGTGCG
38047192 AATTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATTGTGATATCCGGGCTAAGCCCGAAGGC
38047222 AATTGTGCGAGTATGATATCCGGGCTAAGCCCGAAGGC
1 AA-T-T----G--TGATATCCGGGCTAAGCCCGAAGGC
38047260 AATTGTG
1 AATTGTG
38047267 CGAGTTGTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 16
0.70 0.00 0.30
Matches are distributed among these distances:
30 4 0.11
31 1 0.03
32 2 0.05
36 2 0.05
37 1 0.03
38 27 0.73
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (30 bp):
AATTGTGATATCCGGGCTAAGCCCGAAGGC
Found at i:38047253 original size:77 final size:78
Alignment explanation
Indices: 38047158--38047308 Score: 259
Period size: 77 Copynumber: 1.9 Consensus size: 78
38047148 AATGTTCGAG
38047158 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
38047222 AATTGTGCGAGTA
66 AATTGTGCGAGTA
* *
38047235 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
**
38047300 CTTTGTGCG
66 AATTGTGCG
38047309 GGTTACCATA
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
77 53 0.77
78 16 0.23
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTA
Found at i:38050832 original size:24 final size:24
Alignment explanation
Indices: 38050804--38050872 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
38050794 CTTATCAAGA
38050804 TAAATATTAGATTAAATTAATAGG
1 TAAATATTAGATTAAATTAATAGG
*
38050828 TAAATATTAGATTAAATTTAATA-T
1 TAAATATTAGATTAAA-TTAATAGG
*
38050852 TAAATCTT--ATTAAATTAATAG
1 TAAATATTAGATTAAATTAATAG
38050873 AATCTTTATC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.15
22 6 0.15
24 23 0.56
25 6 0.15
ACGTcount: A:0.49, C:0.01, G:0.07, T:0.42
Consensus pattern (24 bp):
TAAATATTAGATTAAATTAATAGG
Found at i:38050942 original size:20 final size:18
Alignment explanation
Indices: 38050892--38050943 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
38050882 CTACAAGATA
38050892 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
38050909 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
38050929 AATATTAAATTAATA
1 AATATTAAATTAATA
38050944 AAATACTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 11 0.37
18 1 0.03
19 3 0.10
20 15 0.50
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:38054239 original size:8 final size:8
Alignment explanation
Indices: 38054226--38054268 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
38054216 ACTTAAGTAT
38054226 ATAATATA
1 ATAATATA
38054234 ATAATATA
1 ATAATATA
*
38054242 TTAATATA
1 ATAATATA
38054250 ATAATATA
1 ATAATATA
*
38054258 ACAATATA
1 ATAATATA
38054266 ATA
1 ATA
38054269 TACTAAAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:38054253 original size:24 final size:25
Alignment explanation
Indices: 38054213--38054265 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
38054203 GACATATATT
*
38054213 TATACTTAAGTATATAATATAATAA
1 TATACTTAAGTATATAATATAACAA
38054238 TATA-TTAA-TATAATAATATAACAA
1 TATACTTAAGTAT-ATAATATAACAA
38054262 TATA
1 TATA
38054266 ATATACTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 3 0.12
24 19 0.73
25 4 0.15
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (25 bp):
TATACTTAAGTATATAATATAACAA
Found at i:38054319 original size:21 final size:21
Alignment explanation
Indices: 38054294--38054338 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
38054284 AAACTAAAGT
38054294 AAATAAA-ACAAAGAAAAAGAG
1 AAATAAAGA-AAAGAAAAAGAG
* *
38054315 AAATAAAGAAACGAAACAGAG
1 AAATAAAGAAAAGAAAAAGAG
38054336 AAA
1 AAA
38054339 AATAGGGGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.73, C:0.07, G:0.16, T:0.04
Consensus pattern (21 bp):
AAATAAAGAAAAGAAAAAGAG
Found at i:38059665 original size:27 final size:24
Alignment explanation
Indices: 38059635--38059704 Score: 65
Period size: 23 Copynumber: 2.9 Consensus size: 24
38059625 GTTTGAAATC
38059635 AAGATTTGGGTGAAGAAAATGCAAGA
1 AAGATTT-GGTGAAGAAAATG-AAGA
*
38059661 GAAGATTT-GAGAA-AAAATGAAGA
1 -AAGATTTGGTGAAGAAAATGAAGA
* *
38059684 AAGATTT-GTGTAGAAGATGAA
1 AAGATTTGGTGAAGAAAATGAA
38059705 AGTGGTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
22 10 0.26
23 11 0.29
24 6 0.16
25 4 0.11
27 7 0.18
ACGTcount: A:0.49, C:0.01, G:0.29, T:0.21
Consensus pattern (24 bp):
AAGATTTGGTGAAGAAAATGAAGA
Found at i:38074824 original size:2 final size:2
Alignment explanation
Indices: 38074817--38074860 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
38074807 GTTAAAACTC
38074817 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38074859 AT
1 AT
38074861 TCACAAAACT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38075098 original size:33 final size:33
Alignment explanation
Indices: 38075061--38075135 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
38075051 CATTACTTAC
* *
38075061 ATGTATTTATATTTAATGAATGTA-TTAGAGTAG
1 ATGTATCTA-ATTTAATGAATGTATTTAGAGAAG
*
38075094 ATGTATCTAGTTTAATGAATGTATTTAGAGAAG
1 ATGTATCTAATTTAATGAATGTATTTAGAGAAG
38075127 ATGTATCTA
1 ATGTATCTA
38075136 GTAGTCATGC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 13 0.34
33 25 0.66
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.43
Consensus pattern (33 bp):
ATGTATCTAATTTAATGAATGTATTTAGAGAAG
Found at i:38075109 original size:32 final size:33
Alignment explanation
Indices: 38075072--38075137 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
38075062 TGTATTTATA
*
38075072 TTTAATGAATGTA-TTAGAGTAGATGTATCTAG
1 TTTAATGAATGTATTTAGAGAAGATGTATCTAG
38075104 TTTAATGAATGTATTTAGAGAAGATGTATCTAG
1 TTTAATGAATGTATTTAGAGAAGATGTATCTAG
38075137 T
1 T
38075138 AGTCATGCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (33 bp):
TTTAATGAATGTATTTAGAGAAGATGTATCTAG
Found at i:38075988 original size:12 final size:12
Alignment explanation
Indices: 38075971--38076012 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
38075961 GGCTGTGGAT
*
38075971 GCGGACGCGGAC
1 GCGGACGCGAAC
38075983 GCGGACGCGAAC
1 GCGGACGCGAAC
* *
38075995 GCGAACGCGAAT
1 GCGGACGCGAAC
38076007 GCGGAC
1 GCGGAC
38076013 AAGGATGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.24, C:0.31, G:0.43, T:0.02
Consensus pattern (12 bp):
GCGGACGCGAAC
Found at i:38093420 original size:2 final size:2
Alignment explanation
Indices: 38093413--38093443 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
38093403 ACTATCCCAT
38093413 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
38093444 TTAAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:38099875 original size:2 final size:2
Alignment explanation
Indices: 38099868--38099893 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
38099858 TAAAACTGCA
38099868 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
38099894 GTGTAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38100458 original size:40 final size:40
Alignment explanation
Indices: 38100413--38100512 Score: 148
Period size: 41 Copynumber: 2.5 Consensus size: 40
38100403 GTGGCATTAA
38100413 CGGCGCTTTTTAAAAAACGCCACTAATGCTCGATCTTTAG
1 CGGCGCTTTTTAAAAAACGCCACTAATGCTCGATCTTTAG
* * *
38100453 TGGCGCTTTTTTAACAAACGCCGCTAATGCTCGATCTTTAG
1 CGGCGC-TTTTTAAAAAACGCCACTAATGCTCGATCTTTAG
*
38100494 CGGCGC-TTTGAAAAAACGC
1 CGGCGCTTTTTAAAAAACGC
38100513 AGCTAAAAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 11 0.21
40 5 0.09
41 37 0.70
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (40 bp):
CGGCGCTTTTTAAAAAACGCCACTAATGCTCGATCTTTAG
Found at i:38102112 original size:46 final size:45
Alignment explanation
Indices: 38102059--38102234 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 45
38102049 TATTTGGGCA
38102059 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* * * *
38102104 GTCCGAACTCGTTGAGTGGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GC
* * *
38102151 ATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
* * * *
38102197 ACCTGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
38102235 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
43 4 0.04
45 3 0.03
46 63 0.59
47 30 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
Found at i:38102219 original size:93 final size:93
Alignment explanation
Indices: 38102055--38102227 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
38102045 GGGATATTTG
* * *
38102055 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACCGAACTCATTGAG
38102120 TGGAGTCCGAGTTCGTGAGATGTAACTA
66 TGGAGTCCGAGTTCGTGAGATGTAACTA
* * *
38102148 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-ACCTGAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACC-GAACTCATTGA
*
38102212 GTTGAGTCCGAGTTCG
65 GTGGAGTCCGAGTTCG
38102228 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACCGAACTCATTGAG
TGGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:38103783 original size:32 final size:32
Alignment explanation
Indices: 38103747--38103811 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
38103737 TCTTATATAA
38103747 TTGTAAAAGAGATAGTATTAATTTTAAAATAT
1 TTGTAAAAGAGATAGTATTAATTTTAAAATAT
38103779 TTGTAAAAGAGATAGTATTAATTTTAAAATAT
1 TTGTAAAAGAGATAGTATTAATTTTAAAATAT
38103811 T
1 T
38103812 GAATTAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.42
Consensus pattern (32 bp):
TTGTAAAAGAGATAGTATTAATTTTAAAATAT
Found at i:38103912 original size:14 final size:14
Alignment explanation
Indices: 38103893--38103926 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
38103883 ACTATTTTAA
*
38103893 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
38103907 GGTTTAGGGATTAT
1 GGTTTAGGGATTAT
*
38103921 AGTTTA
1 GGTTTA
38103927 AGGGTTGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:38103937 original size:21 final size:22
Alignment explanation
Indices: 38103913--38103958 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
38103903 TTATGGTTTA
38103913 GGGATTATA-GTTTAAGGGTT-G
1 GGGATTA-AGGTTTAAGGGTTAG
*
38103934 GGGATTAAGGTTTAGGGGTTAG
1 GGGATTAAGGTTTAAGGGTTAG
38103956 GGG
1 GGG
38103959 TCTAGGGGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 1 0.05
21 17 0.77
22 4 0.18
ACGTcount: A:0.22, C:0.00, G:0.46, T:0.33
Consensus pattern (22 bp):
GGGATTAAGGTTTAAGGGTTAG
Found at i:38104005 original size:14 final size:14
Alignment explanation
Indices: 38103988--38104035 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
38103978 GTGTTTATGT
38103988 TTTAGGATTTAGGG
1 TTTAGGATTTAGGG
* *
38104002 TTTAAGAATTAGGG
1 TTTAGGATTTAGGG
* *
38104016 ATTAGAAGTTTAGGG
1 TTTAGGA-TTTAGGG
38104031 TTTAG
1 TTTAG
38104036 ATTAATTAGT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 16 0.62
15 10 0.38
ACGTcount: A:0.29, C:0.00, G:0.31, T:0.40
Consensus pattern (14 bp):
TTTAGGATTTAGGG
Found at i:38106088 original size:40 final size:40
Alignment explanation
Indices: 38105847--38106074 Score: 370
Period size: 40 Copynumber: 5.7 Consensus size: 40
38105837 ATTCGGATTG
* * *
38105847 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
38105887 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
38105926 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
38105966 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
38106006 ATAACCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
38106046 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
38106075 AGGTAGTAGC
Statistics
Matches: 176, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 35 0.20
40 141 0.80
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:38112155 original size:23 final size:23
Alignment explanation
Indices: 38112125--38112190 Score: 114
Period size: 23 Copynumber: 2.9 Consensus size: 23
38112115 TGGCTGCTGT
*
38112125 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
38112148 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
*
38112171 TGTTTAAATGTTGTAAATTG
1 TGTTTAAATGCTGTAAATTG
38112191 GTGTCTGGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (23 bp):
TGTTTAAATGCTGTAAATTGAAG
Found at i:38112179 original size:46 final size:45
Alignment explanation
Indices: 38112125--38112397 Score: 137
Period size: 46 Copynumber: 6.1 Consensus size: 45
38112115 TGGCTGCTGT
38112125 TGTTTAAATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGCAAATTG-AGTGTTTAAATGCTGTAAATTGAAG
* * *
38112171 TGTTTAAATGTTGTAAATTG-GTG------T-CTGGAAATTG-AG
1 TGTTTAAATGCTGCAAATTGAGTGTTTAAATGCTGTAAATTGAAG
* * *
38112207 ATGATTT--ATCGCTG-TAATTGAGT-TATATAAATGTTGTTAATTG-AG
1 -TG-TTTAAAT-GCTGCAAATTGAGTGT-T-TAAATGCTGTAAATTGAAG
*
38112252 ATG-TTAAAGTGCTGCAAATTGAAGTGTTTAAACGCTGTAAATTGAAG
1 -TGTTTAAA-TGCTGCAAATTG-AGTGTTTAAATGCTGTAAATTGAAG
* * * * * * *
38112299 TGCTTAAATGTTGTAAATTAAAGTGTTTTAAGTACTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATT-GAGTG-TTTAAATGCTGTAAATTGAAG
** * * * *
38112346 TGTTTAGTTGTTGGAAATTGAGATGTTT-TATCGCTGCAAATTGAAG
1 TGTTTAAATGCTGCAAATTGAG-TGTTTAAAT-GCTGTAAATTGAAG
38112392 TGTTTA
1 TGTTTA
38112398 GTTGCTGGAA
Statistics
Matches: 175, Mismatches: 27, Indels: 50
0.69 0.11 0.20
Matches are distributed among these distances:
36 9 0.05
37 16 0.09
38 4 0.02
43 2 0.01
44 4 0.02
45 18 0.10
46 76 0.43
47 45 0.26
48 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.40
Consensus pattern (45 bp):
TGTTTAAATGCTGCAAATTGAGTGTTTAAATGCTGTAAATTGAAG
Found at i:38112279 original size:23 final size:23
Alignment explanation
Indices: 38112255--38112397 Score: 119
Period size: 23 Copynumber: 6.1 Consensus size: 23
38112245 AATTGAGATG
38112255 TTAAAGTGCTGCAAATTGAAGTGT
1 TTAAA-TGCTGCAAATTGAAGTGT
* * *
38112279 TTAAACGCTGTAAATTGAAGTGC
1 TTAAATGCTGCAAATTGAAGTGT
* * *
38112302 TTAAATGTTGTAAATTAAAGTGTT
1 TTAAATGCTGCAAATTGAAGTG-T
* *
38112326 TTAAGTACTGCAAATTGAAGTGT
1 TTAAATGCTGCAAATTGAAGTGT
** * *
38112349 TTAGTTGTTGGAAATTG-AGATGT
1 TTAAATGCTGCAAATTGAAG-TGT
*
38112372 TT-TATCGCTGCAAATTGAAGTGT
1 TTAAAT-GCTGCAAATTGAAGTGT
38112395 TTA
1 TTA
38112398 GTTGCTGGAA
Statistics
Matches: 93, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
22 3 0.03
23 66 0.71
24 24 0.26
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.38
Consensus pattern (23 bp):
TTAAATGCTGCAAATTGAAGTGT
Found at i:38112358 original size:47 final size:46
Alignment explanation
Indices: 38112290--38112408 Score: 134
Period size: 47 Copynumber: 2.6 Consensus size: 46
38112280 TAAACGCTGT
* ** *
38112290 AAATTGAAGTGCTTAAATGTTGTAAATTAA-AGTGTTTTAAGT-ACTGC
1 AAATTGAAGTGTTTAGTTGTTGGAAATTAAGA-TGTTTT-A-TCACTGC
* *
38112337 AAATTGAAGTGTTTAGTTGTTGGAAATTGAGATGTTTTATCGCTGC
1 AAATTGAAGTGTTTAGTTGTTGGAAATTAAGATGTTTTATCACTGC
*
38112383 AAATTGAAGTGTTTAGTTGCTGGAAA
1 AAATTGAAGTGTTTAGTTGTTGGAAA
38112409 AGAGATCTCT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
45 1 0.02
46 30 0.48
47 31 0.49
48 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.39
Consensus pattern (46 bp):
AAATTGAAGTGTTTAGTTGTTGGAAATTAAGATGTTTTATCACTGC
Found at i:38112850 original size:19 final size:19
Alignment explanation
Indices: 38112827--38112873 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
38112817 ATTTAATCTA
*
38112827 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
38112845 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
38112865 ATTTTTATT
1 ATTTTTATT
38112874 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:38112875 original size:31 final size:30
Alignment explanation
Indices: 38112794--38112885 Score: 100
Period size: 31 Copynumber: 3.0 Consensus size: 30
38112784 AAAAGACTTG
*
38112794 CTATA-TTTTATTTATATCTTTATATTTAAT
1 CTATATTTTTATTTTTAT-TTTATATTTAAT
*
38112824 CTA-ATTTTTATTATTTATTTTAGT-TTTGATT
1 CTATATTTTTATT-TTTATTTTA-TATTT-AAT
38112855 CTATATTTTTATTTTTATTTTAATATTTAAT
1 CTATATTTTTATTTTTATTTT-ATATTTAAT
38112886 AACTTGAGTT
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
29 1 0.02
30 17 0.33
31 21 0.40
32 13 0.25
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.66
Consensus pattern (30 bp):
CTATATTTTTATTTTTATTTTATATTTAAT
Found at i:38113031 original size:11 final size:11
Alignment explanation
Indices: 38113011--38113039 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
38113001 TTTAATTTGA
38113011 TAAT-GAATTT
1 TAATAGAATTT
38113021 TAATAGAATTT
1 TAATAGAATTT
38113032 TAATAGAA
1 TAATAGAA
38113040 AATTTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (11 bp):
TAATAGAATTT
Found at i:38115742 original size:15 final size:17
Alignment explanation
Indices: 38115706--38115742 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
38115696 TCTTGTATTT
38115706 TATATAATTATTTAAAA
1 TATATAATTATTTAAAA
38115723 TATATAATTATTTAAAA
1 TATATAATTATTTAAAA
38115740 TAT
1 TAT
38115743 TTCACATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TATATAATTATTTAAAA
Found at i:38127950 original size:33 final size:32
Alignment explanation
Indices: 38127913--38127974 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
38127903 TATTATGTTA
* * *
38127913 TTATATATTTTATATTATCATTAAAGTTTAATT
1 TTATAGATTTTA-ATAATCATTAAAATTTAATT
*
38127946 TTATAGATTTTAATAATTATTAAAATTTA
1 TTATAGATTTTAATAATCATTAAAATTTA
38127975 TATATTAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 14 0.56
33 11 0.44
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (32 bp):
TTATAGATTTTAATAATCATTAAAATTTAATT
Found at i:38128039 original size:25 final size:28
Alignment explanation
Indices: 38128010--38128068 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 28
38128000 TAATATTATC
38128010 TTATTT-AATTTAT-ATTT-TTAAAAAT
1 TTATTTCAATTTATAATTTATTAAAAAT
* *
38128035 TTATTTCACTTTATAATTTAATTTAAAAT
1 TTATTTCAATTTATAATTT-ATTAAAAAT
38128064 TTATT
1 TTATT
38128069 ATTAATTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 6 0.21
26 6 0.21
27 4 0.14
29 12 0.43
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.59
Consensus pattern (28 bp):
TTATTTCAATTTATAATTTATTAAAAAT
Found at i:38128836 original size:15 final size:15
Alignment explanation
Indices: 38128816--38128857 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
38128806 GTAGTAAAAA
38128816 TTCAGTACTTAATTT
1 TTCAGTACTTAATTT
38128831 TTCAGTACTTAATTT
1 TTCAGTACTTAATTT
* *
38128846 TCCAATACTTAA
1 TTCAGTACTTAA
38128858 AATTTTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.05, T:0.48
Consensus pattern (15 bp):
TTCAGTACTTAATTT
Found at i:38129429 original size:21 final size:21
Alignment explanation
Indices: 38129405--38129482 Score: 83
Period size: 21 Copynumber: 3.8 Consensus size: 21
38129395 AATATAAATA
38129405 ATAAAATATTATTAAAAATTT
1 ATAAAATATTATTAAAAATTT
* *
38129426 ATAAAATATTA-TAATAA-CT
1 ATAAAATATTATTAAAAATTT
*
38129445 ATTAAAA-ATTATAAAAAATTT
1 A-TAAAATATTATTAAAAATTT
38129466 ATAGAAATATT-TTAAAA
1 ATA-AAATATTATTAAAA
38129483 GTTATAAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 6 0.13
20 16 0.35
21 21 0.46
22 3 0.07
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (21 bp):
ATAAAATATTATTAAAAATTT
Found at i:38129437 original size:10 final size:10
Alignment explanation
Indices: 38129405--38129482 Score: 56
Period size: 11 Copynumber: 7.6 Consensus size: 10
38129395 AATATAAATA
38129405 ATAAAATATT
1 ATAAAATATT
38129415 ATTAAAA-ATTT
1 A-TAAAATA-TT
38129426 ATAAAATATT
1 ATAAAATATT
38129436 ATAATAACTA-T
1 ATAA-AA-TATT
38129447 -TAAAA-ATT
1 ATAAAATATT
*
38129455 ATAAAAAATTT
1 ATAAAATA-TT
38129466 ATAGAAATATT
1 ATA-AAATATT
*
38129477 TTAAAA
1 ATAAAA
38129483 GTTATAAGTT
Statistics
Matches: 56, Mismatches: 2, Indels: 20
0.72 0.03 0.26
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 7 0.12
10 20 0.36
11 21 0.38
12 6 0.11
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (10 bp):
ATAAAATATT
Found at i:38129441 original size:29 final size:29
Alignment explanation
Indices: 38129400--38129460 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
38129390 TTTTTAATAT
*
38129400 AAATAATAAAAT-ATTATTAAAAATTTATA
1 AAATAATAAAATAACTATTAAAAA-TTATA
* *
38129429 AAATATTATAATAACTATTAAAAATTATA
1 AAATAATAAAATAACTATTAAAAATTATA
38129458 AAA
1 AAA
38129461 AATTTATAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (29 bp):
AAATAATAAAATAACTATTAAAAATTATA
Found at i:38129722 original size:16 final size:16
Alignment explanation
Indices: 38129701--38129771 Score: 70
Period size: 16 Copynumber: 4.4 Consensus size: 16
38129691 GTTTGGTTCA
* *
38129701 CTGTAATAGACTAGGG
1 CTGTAATAGAATAGAG
*
38129717 CTGTAATTGAATAGAG
1 CTGTAATAGAATAGAG
*
38129733 CTGTAATAGAATAAAG
1 CTGTAATAGAATAGAG
* * *
38129749 TTGTAATGGAATATAG
1 CTGTAATAGAATAGAG
*
38129765 TTGTAAT
1 CTGTAAT
38129772 CAGTAATTCA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (16 bp):
CTGTAATAGAATAGAG
Found at i:38129952 original size:25 final size:26
Alignment explanation
Indices: 38129918--38129967 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
38129908 TAGGTAGATG
*
38129918 ATTATTGTT-ATTAAATTTTAATAAC
1 ATTATTGTTAAATAAATTTTAATAAC
*
38129943 ATTATTGTTAAATACATTTTAATAA
1 ATTATTGTTAAATAAATTTTAATAA
38129968 AAATAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (26 bp):
ATTATTGTTAAATAAATTTTAATAAC
Found at i:38130008 original size:61 final size:58
Alignment explanation
Indices: 38129943--38130068 Score: 155
Period size: 61 Copynumber: 2.1 Consensus size: 58
38129933 TTTTAATAAC
* * * *
38129943 ATTATTGTTAAATACATTTTAATAAAAATAAAAATAAATAATTTAATCATATT-TTAACATA
1 ATTATTATTAAATACAATTTAAT-AAAAT---AATAAATAATTTAATAACATTCTTAACATA
* *
38130004 ATTATTATTAAATACAATTTAATAAAATAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATACAATTTAATAAAATAATAAATAATTTAATAACATTCTTAACATA
38130062 ATTATTA
1 ATTATTA
38130069 ATAATTATTA
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
57 18 0.31
58 14 0.24
60 5 0.09
61 21 0.36
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.43
Consensus pattern (58 bp):
ATTATTATTAAATACAATTTAATAAAATAATAAATAATTTAATAACATTCTTAACATA
Found at i:38130445 original size:25 final size:27
Alignment explanation
Indices: 38130415--38130465 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 27
38130405 TAAAAATATC
38130415 AAAACTCATAG-TCCTT-TGTTATTCA
1 AAAACTCATAGTTCCTTATGTTATTCA
*
38130440 AAAACTCATAGTTCTTTATGTTATTC
1 AAAACTCATAGTTCCTTATGTTATTC
38130466 TCGTATAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.48
26 4 0.17
27 8 0.35
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (27 bp):
AAAACTCATAGTTCCTTATGTTATTCA
Found at i:38132841 original size:73 final size:73
Alignment explanation
Indices: 38132761--38132903 Score: 227
Period size: 73 Copynumber: 2.0 Consensus size: 73
38132751 TACAAGTAAT
*
38132761 TAACATTTACCAGCTATCAAAGTTGTA-AAAGACCCAGAAAAAAATCAAAAATTGCAAAGAAAAC
1 TAACATTTACCAGCTATCAAAGTTGTAGAAA-ACCCA-AAAAAAATAAAAAATTGCAAAGAAAAC
38132825 A-GAGAAAAA
64 ATGAGAAAAA
* *
38132834 TAACATTTACCAGCTATCGAAGTTGTAGAAAACCCAAGAAAAATAAAAAATTGCAAAGAAAACAT
1 TAACATTTACCAGCTATCAAAGTTGTAGAAAACCCAAAAAAAATAAAAAATTGCAAAGAAAACAT
38132899 GAGAA
66 GAGAA
38132904 TTAAAAAAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
72 26 0.40
73 36 0.55
74 3 0.05
ACGTcount: A:0.55, C:0.15, G:0.13, T:0.17
Consensus pattern (73 bp):
TAACATTTACCAGCTATCAAAGTTGTAGAAAACCCAAAAAAAATAAAAAATTGCAAAGAAAACAT
GAGAAAAA
Found at i:38133158 original size:43 final size:43
Alignment explanation
Indices: 38133097--38133329 Score: 153
Period size: 43 Copynumber: 5.6 Consensus size: 43
38133087 TAACATTTTG
* *
38133097 ACGCCGCTATAGAACATGAACTTTAGCGGCGCTTTTACCACAA
1 ACGCCGCTAAAGAACATGAACTTTAGCGGCGCTTTTCCCACAA
** ** *
38133140 ACGCCGCTAAAGAACATG-ACATTTAGCCACAATTTTCCTACAA
1 ACGCCGCTAAAGAACATGAAC-TTTAGCGGCGCTTTTCCCACAA
** * * * * *
38133183 ACGCCATTAAAG-A-ATGGACCTTTAACGACACTTTTCCCAGAA
1 ACGCCGCTAAAGAACAT-GAACTTTAGCGGCGCTTTTCCCACAA
** * ** *
38133225 ACATCGCT-AA-AA-ATGACCTTTAGCGGCGCTTTTTCAAAAAA
1 ACGCCGCTAAAGAACATGAACTTTAGCGGCGC-TTTTCCCACAA
** * *
38133266 ACGCTACTATAGAACA-GACCTTTAGCGGCGCTTTTCCCACAA
1 ACGCCGCTAAAGAACATGAACTTTAGCGGCGCTTTTCCCACAA
38133308 ACGCCGCT-AA-AACATG-ACTTTA
1 ACGCCGCTAAAGAACATGAACTTTA
38133330 AAAAATATTT
Statistics
Matches: 144, Mismatches: 37, Indels: 21
0.71 0.18 0.10
Matches are distributed among these distances:
40 21 0.15
41 21 0.15
42 40 0.28
43 61 0.42
44 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (43 bp):
ACGCCGCTAAAGAACATGAACTTTAGCGGCGCTTTTCCCACAA
Found at i:38137651 original size:64 final size:63
Alignment explanation
Indices: 38137537--38137657 Score: 163
Period size: 64 Copynumber: 1.9 Consensus size: 63
38137527 ATCCACTAAA
* *
38137537 CCTTAAATCATAAAACATAAACTATAAACCCTTAACCCCTAACACCTAAACCTTAAACCCCAAC
1 CCTTAAATCATAAAACATAAACTATAAACCCTAAACCCATAACA-CTAAACCTTAAACCCCAAC
* * *
38137601 CCTTAAATCATAAATCATAAATTATAATCCCTAAACCCATAATCTA-TAAACCTTAAA
1 CCTTAAATCATAAAACATAAACTATAAACCCTAAACCCATAA-C-ACTAAACCTTAAA
38137658 ATAGTAACTC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
64 48 0.96
65 1 0.02
66 1 0.02
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (63 bp):
CCTTAAATCATAAAACATAAACTATAAACCCTAAACCCATAACACTAAACCTTAAACCCCAAC
Found at i:38138086 original size:40 final size:39
Alignment explanation
Indices: 38138027--38138130 Score: 147
Period size: 40 Copynumber: 2.6 Consensus size: 39
38138017 TTTTGAGGCG
*
38138027 TTTTTCAAAAAGCGCCGCTAATGGTCG-ACTTATAGCGGCA
1 TTTTTCAAAAAGCG-CGCTAATGCTCGAAC-TATAGCGGCA
*
38138067 TTTTTCAAAAAGCGTCGCTAATGCTCGAACTATAGCGGCG
1 TTTTTCAAAAAGCG-CGCTAATGCTCGAACTATAGCGGCA
38138107 TTTTTCAAAAAGCGCTGCTAATGC
1 TTTTTCAAAAAGCGC-GCTAATGC
38138131 GACTAAAGCT
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
39 1 0.02
40 56 0.95
41 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (39 bp):
TTTTTCAAAAAGCGCGCTAATGCTCGAACTATAGCGGCA
Found at i:38138202 original size:12 final size:12
Alignment explanation
Indices: 38138193--38138228 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
38138183 TTCAAAAAGG
38138193 GCCGCTAAAAAC
1 GCCGCTAAAAAC
38138205 GCCGCTAAAAAC
1 GCCGCTAAAAAC
38138217 GCCGCTAAAAAC
1 GCCGCTAAAAAC
38138229 CTGTTTTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.42, C:0.33, G:0.17, T:0.08
Consensus pattern (12 bp):
GCCGCTAAAAAC
Found at i:38139304 original size:19 final size:19
Alignment explanation
Indices: 38139260--38139305 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
38139250 AATTAAAAAA
38139260 TTAAT-TTTTTTCATATTT
1 TTAATATTTTTTCATATTT
*
38139278 TCAA-ATTTTTT-ATAATTT
1 TTAATATTTTTTCAT-ATTT
38139296 TTAATATTTT
1 TTAATATTTT
38139306 AAATAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
17 2 0.09
18 16 0.70
19 5 0.22
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.67
Consensus pattern (19 bp):
TTAATATTTTTTCATATTT
Found at i:38152417 original size:80 final size:80
Alignment explanation
Indices: 38152235--38152400 Score: 323
Period size: 80 Copynumber: 2.1 Consensus size: 80
38152225 TGAAAAGTGT
38152235 TAGCATGAAAACACCTAAAGGGGCTATTTTGCATAAGTTGCAAAATATGTGGTAAGTGTGTGAAA
1 TAGC-TGAAAACACCTAAAGGGGCTATTTTGCATAAGTTGCAAAATATGTGGTAAGTGTGTGAAA
38152300 TAGTGAGAAATTGGGG
65 TAGTGAGAAATTGGGG
38152316 TAGCTGAAAACACCTAAAGGGGCTATTTTGCATAAGTTGCAAAATATGTGGTAAGTGTGTGAAAT
1 TAGCTGAAAACACCTAAAGGGGCTATTTTGCATAAGTTGCAAAATATGTGGTAAGTGTGTGAAAT
38152381 AGTGAGAAATTGGGG
66 AGTGAGAAATTGGGG
38152396 TAGCT
1 TAGCT
38152401 ATAAGAGTAA
Statistics
Matches: 85, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
80 81 0.95
81 4 0.05
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.28
Consensus pattern (80 bp):
TAGCTGAAAACACCTAAAGGGGCTATTTTGCATAAGTTGCAAAATATGTGGTAAGTGTGTGAAAT
AGTGAGAAATTGGGG
Found at i:38152937 original size:47 final size:45
Alignment explanation
Indices: 38152867--38153186 Score: 263
Period size: 47 Copynumber: 6.8 Consensus size: 45
38152857 GATTTCTTGT
*
38152867 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TATGATGA
* * * *
38152913 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTA-TGATGA
* * *
38152961 GTGCCAGTGTAAGACATGTTTGGGACATACATCGGCCT-TGACGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTATGATGA
* * *
38153005 TGATAGCCAGTGTAAGACGTGTCTGGGACATGCATCGG-CTAAGA-GTT
1 -G-T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTATGATG-A
* **
38153052 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAACACGTAT-ATACGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-C-TATGAT--GA
** * *
38153100 AAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCT--ATGATGA
*
38153149 -TAGCCAATGTAAGACTATGTCTGGGACATGGCATCGGC
1 GT-GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
38153187 AACTTTTCCT
Statistics
Matches: 221, Mismatches: 32, Indels: 39
0.76 0.11 0.13
Matches are distributed among these distances:
44 33 0.15
45 2 0.01
46 27 0.12
47 63 0.29
48 37 0.17
49 49 0.22
50 8 0.04
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (45 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTATGATGA
Found at i:38153135 original size:141 final size:140
Alignment explanation
Indices: 38152869--38153187 Score: 367
Period size: 141 Copynumber: 2.2 Consensus size: 140
38152859 TTTCTTGTGT
**
38152869 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGTGCTAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATAAGATGAGTGCTAGTGTAAGACCATGTC
*** * ** * *
38152934 TGGGACATGGCATTGGCGTAGAGATGAGTGCCAGTGTAAGACATGTTTGGGACATACATCGGCCT
65 TGGGACATGGCATACACGTAGAGACGAAAGCCAGTATAAGACATGTCTGGGACATACATCGGCCT
*
38152999 TGACGATGATA
130 CGACGATGATA
* *
38153010 GCCAGTGTAAGACGTGTCTGGGACATGCATCGGC-TAAGA-GTTGTGCTAGTGTAAGA-CATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAAGATG-AGTGCTAGTGTAAGACCATGTC
* * * *
38153072 TGGGACAT-GCATCAACACGTATATACGAAAGCTAGTATAAGACCATGTCTGGGACATGGCATCG
65 TGGGACATGGCAT--ACACGTAGAGACGAAAGCCAGTATAAGA-CATGTCTGGGACAT-ACATCG
*
38153136 GCCTCGATGATGATA
126 GCCTCGACGATGATA
*
38153151 GCCAATGTAAGACTATGTCTGGGACATGGCATCGGCA
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCA
38153188 ACTTTTCCTA
Statistics
Matches: 150, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
137 4 0.03
138 15 0.10
139 35 0.23
140 14 0.09
141 62 0.41
142 12 0.08
143 8 0.05
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (140 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAAGATGAGTGCTAGTGTAAGACCATGTCT
GGGACATGGCATACACGTAGAGACGAAAGCCAGTATAAGACATGTCTGGGACATACATCGGCCTC
GACGATGATA
Found at i:38161171 original size:29 final size:29
Alignment explanation
Indices: 38161139--38161211 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
38161129 CTTCGAGCTC
*
38161139 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
38161168 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
38161197 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
38161212 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:38169110 original size:29 final size:29
Alignment explanation
Indices: 38169078--38169150 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
38169068 CTTCGAGCTC
*
38169078 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
38169107 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
38169136 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
38169151 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:38183979 original size:29 final size:29
Alignment explanation
Indices: 38183906--38184003 Score: 123
Period size: 29 Copynumber: 3.5 Consensus size: 29
38183896 AATTTAAGCC
* ** *
38183906 GCACACATAGTGCCATA-CCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
38183933 GCACAC--AGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
38183960 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
38183989 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
38184004 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
25 8 0.13
26 6 0.10
27 13 0.21
29 35 0.56
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:38189748 original size:48 final size:48
Alignment explanation
Indices: 38189672--38189935 Score: 315
Period size: 48 Copynumber: 5.6 Consensus size: 48
38189662 AGGGTAAAAT
* * * * * *
38189672 GCCGGTGCCATGTTCCAAACGTAGTCTTACATTGGCTCACATATCGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* * *
38189720 GCTGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATAGCAAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* * *
38189768 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCCTATCAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAAG
**
38189816 GCCGATGCCA---T--AAACATGGTCTTACACTGGCT-TACATATTGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCT-CATATCAAG
* * * *
38189859 GCCGATGCCATGTTCCAAGCATGGTCTTACACTAGCTCTCCTATCAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAAG
38189907 GCCGATGCCATGTTCCAAACATGGTCTTA
1 GCCGATGCCATGTTCCAAACATGGTCTTA
38189936 TGTAACACCC
Statistics
Matches: 184, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.01
43 35 0.19
45 1 0.01
46 1 0.01
48 145 0.79
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAAG
Found at i:38189867 original size:91 final size:91
Alignment explanation
Indices: 38189736--38189917 Score: 303
Period size: 91 Copynumber: 2.0 Consensus size: 91
38189726 GCCATGTTCC
*
38189736 AAACATGGTCTTACATTGGCTCTCATAGCAAGGCCGATGCCATGTTCCAAACATGGTCTTACACT
1 AAACATGGTCTTACACTGGCTCTCATAGCAAGGCCGATGCCATGTTCCAAACATGGTCTTACACT
38189801 AGCTCTCCTATCAATGCCGATGCCAT
66 AGCTCTCCTATCAATGCCGATGCCAT
*** *
38189827 AAACATGGTCTTACACTGGCT-TACATATTGAGGCCGATGCCATGTTCCAAGCATGGTCTTACAC
1 AAACATGGTCTTACACTGGCTCT-CATAGCAAGGCCGATGCCATGTTCCAAACATGGTCTTACAC
38189891 TAGCTCTCCTATCAATGCCGATGCCAT
65 TAGCTCTCCTATCAATGCCGATGCCAT
38189918 GTTCCAAACA
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
90 1 0.01
91 84 0.99
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (91 bp):
AAACATGGTCTTACACTGGCTCTCATAGCAAGGCCGATGCCATGTTCCAAACATGGTCTTACACT
AGCTCTCCTATCAATGCCGATGCCAT
Found at i:38191350 original size:37 final size:37
Alignment explanation
Indices: 38191297--38191385 Score: 137
Period size: 37 Copynumber: 2.4 Consensus size: 37
38191287 TATAAAAGAA
38191297 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
38191334 GTCTTACCCGGTCATAATCTCCACACGTAGTCATC--
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
38191369 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
38191386 TTCCAAGTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
35 10 0.21
36 4 0.08
37 34 0.71
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:38191536 original size:49 final size:49
Alignment explanation
Indices: 38191481--38191743 Score: 456
Period size: 49 Copynumber: 5.4 Consensus size: 49
38191471 TTTTACATTA
38191481 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
38191530 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
38191579 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
38191628 GCCATTAGGCC-TATCACATATACACACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
38191676 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
38191725 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
38191744 CATATATGTA
Statistics
Matches: 205, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 45 0.22
49 160 0.78
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:38191693 original size:97 final size:98
Alignment explanation
Indices: 38191481--38191743 Score: 456
Period size: 97 Copynumber: 2.7 Consensus size: 98
38191471 TTTTACATTA
38191481 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
*
38191546 ACATATACATACACTTTCACATTCACCACATCG
66 ACATATACACACACTTTCACATTCACCACATCG
*
38191579 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCC-TATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
*
38191643 ACATATACACACACTTTCACATTCATCACATCG
66 ACATATACACACACTTTCACATTCACCACATCG
* * * *
38191676 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTGGCCATTCGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
38191741 ACA
66 ACA
38191744 CATATATGTA
Statistics
Matches: 156, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
97 90 0.58
98 66 0.42
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.29
Consensus pattern (98 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
ACATATACACACACTTTCACATTCACCACATCG
Found at i:38200572 original size:40 final size:40
Alignment explanation
Indices: 38200517--38200653 Score: 213
Period size: 40 Copynumber: 3.4 Consensus size: 40
38200507 TGAATGATAC
*
38200517 CCGGGCTAAGCCCCGAAGGCATTTGTGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
38200557 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
*
38200597 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
*
38200637 CCGGGCTAAGCCCCGAA
1 CCGGGCTAAGACCCGAA
38200654 TGTGACAGCC
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 87 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:38202233 original size:27 final size:28
Alignment explanation
Indices: 38202177--38202246 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
38202167 AAATTTGTAC
38202177 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
38202205 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
38202232 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
38202247 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:38202257 original size:27 final size:27
Alignment explanation
Indices: 38202177--38202258 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
38202167 AAATTTGTAC
* *
38202177 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
38202205 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
38202232 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
38202259 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:38211648 original size:40 final size:39
Alignment explanation
Indices: 38211588--38211795 Score: 256
Period size: 40 Copynumber: 5.2 Consensus size: 39
38211578 TGAATGATAC
*
38211588 CCGGGCTAAGCCCCGAAGGCATTTGTGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
* * *
38211628 CCGGCCTAAGACTCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
*
38211668 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* * *
38211708 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* * * *
38211748 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GTTATAT
38211788 CC-GGCTAA
1 CCGGGCTAA
38211796 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 18, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
39 6 0.04
40 140 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
Found at i:38215683 original size:43 final size:42
Alignment explanation
Indices: 38215636--38215716 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
38215626 ACCACGTTTT
* * *
38215636 GGACATGGCTTCGAAGATGAGGCTTCGTATAAGACCATATCTG
1 GGACATGGCATCG-AGATGAGACATCGTATAAGACCATATCTG
* *
38215679 GGACATGGCATCGATATGAGACATCGTGTAAGACCATA
1 GGACATGGCATCGAGATGAGACATCGTATAAGACCATA
38215717 GCTAGGCTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 21 0.64
43 12 0.36
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (42 bp):
GGACATGGCATCGAGATGAGACATCGTATAAGACCATATCTG
Done.