Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 13 of 433
Found at i:3543139 original size:21 final size:21
Alignment explanation
Indices: 3543113--3543154 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
3543103 GCCCCAAGAC
3543113 ATCACTCTCCAAAGCATTGTT
1 ATCACTCTCCAAAGCATTGTT
3543134 ATCACTCTCCAAAGCATTGTT
1 ATCACTCTCCAAAGCATTGTT
3543155 TGCTTGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (21 bp):
ATCACTCTCCAAAGCATTGTT
Found at i:3545213 original size:23 final size:23
Alignment explanation
Indices: 3545182--3545228 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
3545172 CAATGACGTT
* *
3545182 CCAATAAGAAGAATCACCATGTC
1 CCAACAAGAAGAACCACCATGTC
*
3545205 CCAACAAGAAGAACCACTATGTC
1 CCAACAAGAAGAACCACCATGTC
3545228 C
1 C
3545229 TGATGATGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.30, G:0.13, T:0.15
Consensus pattern (23 bp):
CCAACAAGAAGAACCACCATGTC
Found at i:3550918 original size:13 final size:13
Alignment explanation
Indices: 3550900--3550928 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
3550890 TTTAGTTTAA
3550900 TTAGTTAATTAGT
1 TTAGTTAATTAGT
3550913 TTAGTTAATTAGT
1 TTAGTTAATTAGT
3550926 TTA
1 TTA
3550929 ATAAACAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:3553940 original size:27 final size:27
Alignment explanation
Indices: 3553902--3553955 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
3553892 TGACAGCAGG
3553902 AATGAGGAGTATGAACTCCTCAAACCA
1 AATGAGGAGTATGAACTCCTCAAACCA
3553929 AATGAGGAGTATGAACTCCTCAAACCA
1 AATGAGGAGTATGAACTCCTCAAACCA
3553956 CCATAATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (27 bp):
AATGAGGAGTATGAACTCCTCAAACCA
Found at i:3554818 original size:19 final size:21
Alignment explanation
Indices: 3554780--3554818 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
3554770 TCCCCGAGTC
*
3554780 ACACGCCCGTGCTCGCCACCA
1 ACACGCCCATGCTCGCCACCA
3554801 ACACGCCCATG-T-GCCACC
1 ACACGCCCATGCTCGCCACC
3554819 CTACCGCAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 10 0.59
ACGTcount: A:0.21, C:0.51, G:0.18, T:0.10
Consensus pattern (21 bp):
ACACGCCCATGCTCGCCACCA
Found at i:3555128 original size:6 final size:6
Alignment explanation
Indices: 3555082--3555115 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
3555072 TCCTCTTATC
*
3555082 TTTTTA -TTTTA TTTTTA TTTTTA CTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
3555116 TTATTTTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:3558465 original size:41 final size:41
Alignment explanation
Indices: 3558419--3558499 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
3558409 TAAAAGACTT
3558419 AAACAAAATAAGATCTCTCACTA-ATTATCTGTTTGCTTTCC
1 AAACAAAATAAGATCTCTCAC-AGATTATCTGTTTGCTTTCC
3558460 AAACAAAATAAGATCTCTCACAGATTATCTGTTTGCTTTC
1 AAACAAAATAAGATCTCTCACAGATTATCTGTTTGCTTTC
3558500 AGCAATTGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 1 0.03
41 38 0.97
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.36
Consensus pattern (41 bp):
AAACAAAATAAGATCTCTCACAGATTATCTGTTTGCTTTCC
Found at i:3561985 original size:17 final size:17
Alignment explanation
Indices: 3561945--3561985 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
3561935 TAAAAATAAC
3561945 AATAAAAACAAAAGGAA
1 AATAAAAACAAAAGGAA
*
3561962 AAGAAAAAC-AAAGTGAA
1 AATAAAAACAAAAG-GAA
3561979 AATAAAA
1 AATAAAA
3561986 GGACTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.76, C:0.05, G:0.12, T:0.07
Consensus pattern (17 bp):
AATAAAAACAAAAGGAA
Found at i:3563636 original size:16 final size:17
Alignment explanation
Indices: 3563603--3563637 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
3563593 TTATGGTCTG
3563603 AAATAGCAATAAAAATA
1 AAATAGCAATAAAAATA
*
3563620 AAATAGCAA-AGAAATA
1 AAATAGCAATAAAAATA
3563636 AA
1 AA
3563638 TATGTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.14
Consensus pattern (17 bp):
AAATAGCAATAAAAATA
Found at i:3570397 original size:51 final size:48
Alignment explanation
Indices: 3570220--3570405 Score: 187
Period size: 50 Copynumber: 3.8 Consensus size: 48
3570210 CCCGAAGCTA
* * *
3570220 TCTGGTACGCATAGTAG-CTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-ACAG
* * *
3570268 TCTGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTAACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CA-CAG
** * *
3570318 TCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCACAG
* *
3570366 TTTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 --TCT-GGTACACATAGTAGCCTGCACTTAGTACTACACA
3570406 TGCGACCTCA
Statistics
Matches: 114, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
47 2 0.02
48 17 0.15
49 20 0.18
50 42 0.37
51 33 0.29
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (48 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCACAG
Found at i:3570414 original size:101 final size:98
Alignment explanation
Indices: 3570231--3570416 Score: 239
Period size: 101 Copynumber: 1.9 Consensus size: 98
3570221 CTGGTACGCA
* * *
3570231 TAGTAGCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGTACTTAG
1 TAGTAGCTGCACTTAGTACTACACACGCGACCAACAGTCTGGTACACATAGTAGCCTGCACTTAG
*
3570296 TACTACACACGTAACCTCACCATCTAATACACG
66 TACTACACACGCAACCTCACCATCTAATACACG
* * * *
3570329 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTTGGGTACGCATAGTAGCCTGCAC
1 TAGTAG-CTGCACTTAGTACTACACACGCGACCAACAG--TCT-GGTACACATAGTAGCCTGCAC
* *
3570393 TTAGTACTACACATGCGACCTCAC
62 TTAGTACTACACACGCAACCTCAC
3570417 AATAGATCAT
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
98 10 0.14
99 23 0.31
100 2 0.03
101 39 0.53
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (98 bp):
TAGTAGCTGCACTTAGTACTACACACGCGACCAACAGTCTGGTACACATAGTAGCCTGCACTTAG
TACTACACACGCAACCTCACCATCTAATACACG
Found at i:3573933 original size:2 final size:2
Alignment explanation
Indices: 3573926--3573956 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3573916 GAGACTAGTC
3573926 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3573957 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3574380 original size:89 final size:89
Alignment explanation
Indices: 3574229--3574418 Score: 380
Period size: 89 Copynumber: 2.1 Consensus size: 89
3574219 TAAGATCCGT
3574229 AAATTTCCCCTGAAACTAGACTCACATATCTGTCCACCATAAAATTTTCATAATTTTTGGTTTAG
1 AAATTTCCCCTGAAACTAGACTCACATATCTGTCCACCATAAAATTTTCATAATTTTTGGTTTAG
3574294 CCAATTAGTACAGTTTATTCATTA
66 CCAATTAGTACAGTTTATTCATTA
3574318 AAATTTCCCCTGAAACTAGACTCACATATCTGTCCACCATAAAATTTTCATAATTTTTGGTTTAG
1 AAATTTCCCCTGAAACTAGACTCACATATCTGTCCACCATAAAATTTTCATAATTTTTGGTTTAG
3574383 CCAATTAGTACAGTTTATTCATTA
66 CCAATTAGTACAGTTTATTCATTA
3574407 AAATTTCCCCTG
1 AAATTTCCCCTG
3574419 TTTCACTTTC
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 101 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (89 bp):
AAATTTCCCCTGAAACTAGACTCACATATCTGTCCACCATAAAATTTTCATAATTTTTGGTTTAG
CCAATTAGTACAGTTTATTCATTA
Found at i:3575304 original size:62 final size:63
Alignment explanation
Indices: 3575130--3575383 Score: 185
Period size: 67 Copynumber: 3.9 Consensus size: 63
3575120 TATAGTTCGA
* * * * *
3575130 CTCTCTTGTAC-ACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGTAG
1 CTCTCTTGT-CTACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATATATCCCGTAG
* * * *
3575193 CTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACACATGCGACCTAGCTACATATATCCCGT
1 CTCTCTTGTCTACATGGTG---TACA-CTAGTACCACCCATGCGACCTAGCTACATATATCCCGT
3575258 AG
62 AG
* **
3575260 CTCTCTT-T-TACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTG
1 CTCTCTTGTCTACATGGTGTACAC-TAGTACCACCCATGCGACCTAGCTACAT-AT-A--TCCCG
3575323 TAG
61 TAG
* * * * ** *
3575326 CTCTCTTGTAC-ACATGATGTGCACCAGCACCATACATGTGACCTAGCTACATACTATC
1 CTCTCTTGT-CTACATGGTGTACACTAGTACCACCCATGCGACCTAGCTACATA-TATC
3575384 TGTATCATCC
Statistics
Matches: 152, Mismatches: 24, Indels: 29
0.74 0.12 0.14
Matches are distributed among these distances:
61 1 0.01
62 28 0.18
63 19 0.12
64 3 0.02
65 9 0.06
66 37 0.24
67 44 0.29
68 11 0.07
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (63 bp):
CTCTCTTGTCTACATGGTGTACACTAGTACCACCCATGCGACCTAGCTACATATATCCCGTAG
Found at i:3575828 original size:28 final size:28
Alignment explanation
Indices: 3575784--3575843 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
3575774 ACAGCATTAT
*
3575784 TGCTGTATTATTGTCATACCAACTTACA
1 TGCTGTATTATTATCATACCAACTTACA
3575812 TGCTGTATTATTATCATACCAACTTACA
1 TGCTGTATTATTATCATACCAACTTACA
3575840 TGCT
1 TGCT
3575844 TTCAACACCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (28 bp):
TGCTGTATTATTATCATACCAACTTACA
Found at i:3601634 original size:20 final size:21
Alignment explanation
Indices: 3601588--3601635 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
3601578 TCATAAAATT
3601588 TAAAA-ATAAATAAATTATAA
1 TAAAATATAAATAAATTATAA
3601608 TACAAATATAAA-AAATTATAA
1 TA-AAATATAAATAAATTATAA
3601629 TAAAATA
1 TAAAATA
3601636 GATTAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.27
21 14 0.54
22 5 0.19
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
TAAAATATAAATAAATTATAA
Found at i:3601643 original size:20 final size:21
Alignment explanation
Indices: 3601591--3601653 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 21
3601581 TAAAATTTAA
3601591 AAATA-AATAAATTATAATAC
1 AAATAGAATAAATTATAATAC
* *
3601611 AAATATAAAAAATTATAATA-
1 AAATAGAATAAATTATAATAC
* *
3601631 AAATAGATTAAATT-TAATTC
1 AAATAGAATAAATTATAATAC
3601651 AAA
1 AAA
3601654 CTATATTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.11
20 19 0.53
21 13 0.36
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (21 bp):
AAATAGAATAAATTATAATAC
Found at i:3602722 original size:3 final size:3
Alignment explanation
Indices: 3602714--3602751 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
3602704 CAAATTCAGA
3602714 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
3602752 GTACTAAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:3609721 original size:12 final size:11
Alignment explanation
Indices: 3609699--3609733 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
3609689 TGTGCAGTAT
3609699 AGAAAACAAAAA
1 AGAAAA-AAAAA
3609711 AGAAGAAAAAAA
1 AGAA-AAAAAAA
3609723 AGAAAAAAAAA
1 AGAAAAAAAAA
3609734 GAGGGATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.32
12 13 0.59
13 2 0.09
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:3612315 original size:18 final size:20
Alignment explanation
Indices: 3612294--3612334 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
3612284 AAAAATTTAA
3612294 AAATTAGA-C-CATAAAAAT
1 AAATTAGATCACATAAAAAT
*
3612312 AAATTAGATCACATATAAAT
1 AAATTAGATCACATAAAAAT
3612332 AAA
1 AAA
3612335 CTTTATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 1 0.05
20 11 0.55
ACGTcount: A:0.61, C:0.10, G:0.05, T:0.24
Consensus pattern (20 bp):
AAATTAGATCACATAAAAAT
Found at i:3619452 original size:43 final size:43
Alignment explanation
Indices: 3619404--3619500 Score: 113
Period size: 43 Copynumber: 2.3 Consensus size: 43
3619394 CTGAAACCAT
*
3619404 AGTGCATCATCAGATAAACCAAAATAGATAAACTGGAACACAA
1 AGTGCATCATCAGATAAACCAAAATAAATAAACTGGAACACAA
* *** * * *
3619447 AGTGCATAATCAGATAAATTGAAGTAAATATACTGGCACACAA
1 AGTGCATCATCAGATAAACCAAAATAAATAAACTGGAACACAA
*
3619490 AGTGCACCATC
1 AGTGCATCATC
3619501 GTACAAGCTG
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (43 bp):
AGTGCATCATCAGATAAACCAAAATAAATAAACTGGAACACAA
Found at i:3626086 original size:25 final size:25
Alignment explanation
Indices: 3626058--3626154 Score: 97
Period size: 25 Copynumber: 3.9 Consensus size: 25
3626048 TACGACCCGT
* *
3626058 ATATCAGAAAGCTCTTGCGAGCCAA
1 ATATCAGGAAGCTCTTGAGAGCCAA
* * *
3626083 ATATCGGGATGCTCATGAGAGCCAA
1 ATATCAGGAAGCTCTTGAGAGCCAA
* *
3626108 GTATCAGGAAGCT-TATGAGAGTCAA
1 ATATCAGGAAGCTCT-TGAGAGCCAA
* *
3626133 GTATCAGGAAGCTCATGAGAGC
1 ATATCAGGAAGCTCTTGAGAGC
3626155 TGTGGTGTGT
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.21
Consensus pattern (25 bp):
ATATCAGGAAGCTCTTGAGAGCCAA
Found at i:3626113 original size:50 final size:50
Alignment explanation
Indices: 3626059--3626154 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
3626049 ACGACCCGTA
* * *
3626059 TATCAGAAAGCTCT-TGCGAGCCAAATATCGGGATGCTCATGAGAGCCAAG
1 TATCAGAAAGCT-TATGAGAGCCAAATATCAGGAAGCTCATGAGAGCCAAG
* * *
3626109 TATCAGGAAGCTTATGAGAGTCAAGTATCAGGAAGCTCATGAGAGC
1 TATCAGAAAGCTTATGAGAGCCAAATATCAGGAAGCTCATGAGAGC
3626155 TGTGGTGTGT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
49 1 0.03
50 38 0.97
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (50 bp):
TATCAGAAAGCTTATGAGAGCCAAATATCAGGAAGCTCATGAGAGCCAAG
Found at i:3636391 original size:41 final size:41
Alignment explanation
Indices: 3636334--3636416 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
3636324 AGTAGATTCA
3636334 TTGCTAAGCCTCTTAAATCACTTAGTTAAAATTTACAAAGT
1 TTGCTAAGCCTCTTAAATCACTTAGTTAAAATTTACAAAGT
3636375 TTGCTAAGCCTCTTAAATCACTTAGTTAAAATTTACAAAGT
1 TTGCTAAGCCTCTTAAATCACTTAGTTAAAATTTACAAAGT
3636416 T
1 T
3636417 ACAAAATATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (41 bp):
TTGCTAAGCCTCTTAAATCACTTAGTTAAAATTTACAAAGT
Found at i:3656744 original size:3 final size:3
Alignment explanation
Indices: 3656720--3656790 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
3656710 AATATCCTTG
* * * * *
3656720 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA TTA TTA TTA CTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
3656767 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
3656791 GTACGTATAA
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 44 0.86
4 5 0.10
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:3657141 original size:5 final size:5
Alignment explanation
Indices: 3657133--3657193 Score: 60
Period size: 5 Copynumber: 13.0 Consensus size: 5
3657123 AATGTTATAT
*
3657133 TATTA TATT- T-TTA TATTA TATTA CA-TA TATTA TATTA TATTCA TATT-
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATT-A TATTA
*
3657180 TTTTA TA-TA TATTA
1 TATTA TATTA TATTA
3657194 CAATGTATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
3 2 0.04
4 12 0.26
5 27 0.59
6 5 0.11
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:3657167 original size:19 final size:19
Alignment explanation
Indices: 3657143--3657195 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
3657133 TATTATATTT
3657143 TTATATTATATTACATATA
1 TTATATTATATTACATATA
*
3657162 TTATATTATATT-CATATT
1 TTATATTATATTACATATA
*
3657180 TTTTATATATATTACA
1 TTATAT-TATATTACA
3657196 ATGTATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 10 0.33
19 18 0.60
20 2 0.07
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATATTATATTACATATA
Found at i:3664979 original size:22 final size:22
Alignment explanation
Indices: 3664951--3665015 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
3664941 ACAAACGAAT
*
3664951 AGAGAGCACTAAAGTGCTATAC
1 AGAGAGCACTAAAGTGCTAAAC
*
3664973 AGAGAGCAC-AGATGTGCTAAAC
1 AGAGAGCACTA-AAGTGCTAAAC
*
3664995 AGAGAGCACTTAACGTGCTAA
1 AGAGAGCAC-TAAAGTGCTAA
3665016 TAATAGAACG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 1 0.03
22 27 0.73
23 8 0.22
24 1 0.03
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (22 bp):
AGAGAGCACTAAAGTGCTAAAC
Found at i:3666201 original size:5 final size:5
Alignment explanation
Indices: 3666193--3666232 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
3666183 TTATGTTTTA
* * *
3666193 TATAT TATAT TATAT TATAT AATAA TATAA TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
3666233 ATTAATACTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (5 bp):
TATAT
Found at i:3666226 original size:20 final size:20
Alignment explanation
Indices: 3666198--3666239 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
3666188 TTTTATATAT
*
3666198 TATATTATATTATATAATAA
1 TATAATATATTATATAATAA
*
3666218 TATAATATATTATATATTAA
1 TATAATATATTATATAATAA
3666238 TA
1 TA
3666240 CTTAAATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TATAATATATTATATAATAA
Found at i:3669654 original size:3 final size:3
Alignment explanation
Indices: 3669646--3670022 Score: 157
Period size: 3 Copynumber: 125.3 Consensus size: 3
3669636 CTTTATTAAA
*
3669646 TAT TAT TAT TAT T-T CTAA TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
3669691 TAGT GTAT ATAT TTT TAT TGT ATAT GTA- TAT GTA- TAT ATAT T-T ATAT
1 TA-T -TAT -TAT TAT TAT TAT -TAT -TAT TAT -TAT TAT -TAT TAT -TAT
* * * *
3669738 ATAA TAT TAT T-T TAAT TAC T-T TAT T-T TAA TAT TTT TAT TA- TAT
1 -TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
** * * *
3669781 T-T GCT T-T TTT GTAT T-T CAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
3669824 TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT GTAGG TA- TAT GTA- TACA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TA-T TAT TAT -TAT TA-T
* * * *
3669872 TAT T-T ATAT ATAG TAT TAT TTT TAT TAC T-T TAT T-T TGA- TAT TTT
1 TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT
** * * *
3669916 TAT TA- TAT TAT ATAT GCT T-T T-T GTAT T-T CAA TAT TAT TAC TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* * * * *
3669959 TAT CAT CAT CAT CAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
3670007 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
3670023 GTTGTTGTTG
Statistics
Matches: 292, Mismatches: 45, Indels: 74
0.71 0.11 0.18
Matches are distributed among these distances:
2 32 0.11
3 217 0.74
4 41 0.14
5 2 0.01
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:3670256 original size:12 final size:12
Alignment explanation
Indices: 3670241--3670474 Score: 123
Period size: 12 Copynumber: 19.9 Consensus size: 12
3670231 TTATTTGTCT
*
3670241 TATTGTTATTAC
1 TATTATTATTAC
3670253 TATT-TGTATTTAC
1 TATTAT-TA-TTAC
**
3670266 CGTTATTATTAC
1 TATTATTATTAC
*
3670278 TATTATTTTTAC
1 TATTATTATTAC
3670290 --TT-TTATTAC
1 TATTATTATTAC
*
3670299 TATTACTATT--
1 TATTATTATTAC
3670309 TATTATTATTAC
1 TATTATTATTAC
*
3670321 TATTATTATCAC
1 TATTATTATTAC
3670333 TATTATT-TTA-
1 TATTATTATTAC
*
3670343 T-TTTTTATTAC
1 TATTATTATTAC
*
3670354 TATTATCATTTTA-
1 TATTAT--TATTAC
* ** *
3670367 AAACATTGTTAC
1 TATTATTATTAC
*
3670379 TATTATTCTTTTAC
1 TATTA-T-TATTAC
* **
3670393 CA-T-TTAACAC
1 TATTATTATTAC
* *
3670403 ATAATATTATTAT
1 -TATTATTATTAC
*
3670416 TATTATTATTAT
1 TATTATTATTAC
*
3670428 TATTATTATTAT
1 TATTATTATTAC
*
3670440 TATTATTATTAT
1 TATTATTATTAC
*
3670452 TATTATTATTAT
1 TATTATTATTAC
3670464 TATTATTATTA
1 TATTATTATTA
3670475 TGTTTCTATT
Statistics
Matches: 173, Mismatches: 30, Indels: 38
0.72 0.12 0.16
Matches are distributed among these distances:
9 10 0.06
10 18 0.10
11 12 0.07
12 105 0.61
13 17 0.10
14 11 0.06
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:3670276 original size:3 final size:3
Alignment explanation
Indices: 3670268--3670475 Score: 142
Period size: 3 Copynumber: 70.3 Consensus size: 3
3670258 GTATTTACCG
* * * *
3670268 TTA TTA TTA CTA TTA TTT TTA CTT- TTA TTA CTA TTA CTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA -TTA TTA
* * * *
3670314 TTA TTA CTA TTA TTA TCA CTA TTA TT- TTA TT- TT- TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * * * ** **
3670359 TCA TT- TTA -AA ACA TTG TTA CTA TTA TTC TT- TTA CCA TTTA ACA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* *
3670402 CATA ATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
3670448 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
3670476 GTTTCTATTA
Statistics
Matches: 160, Mismatches: 35, Indels: 20
0.74 0.16 0.09
Matches are distributed among these distances:
2 13 0.08
3 140 0.88
4 7 0.04
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:3683021 original size:155 final size:155
Alignment explanation
Indices: 3682718--3683141 Score: 609
Period size: 155 Copynumber: 2.7 Consensus size: 155
3682708 ATATTTCTAC
* * *
3682718 TTCTGTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAATGGAGCCTCGGGTCACACGCTGA
1 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGA
* * *
3682783 GGTATTTTCAATTTCT-GTTTTTCAAAAAAATCAACTAATATTACGAGAGGTGAGTGGAGCCTCA
66 GGTATTTTCAATTTCTACTTTTTTAAAAAAATCAACTCATATTACGAGAGGTGAGTGGAGCCTCA
*
3682847 CGTCACACGCTGAGGTATTTTCAAT
131 CGTCACACACTGAGGTATTTTCAAT
* *
3682872 TTCTGTTTTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
1 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGA
* *
3682937 GGTATTTTCAATTTCTATTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCA
66 GGTATTTTCAATTTCTACTTTTTTAAAAAAATCAACTCATATTACGAGAGGTGAGTGGAGCCTCA
* *
3683002 GGTCACATACTGAGGTATTTTCAAT
131 CGTCACACACTGAGGTATTTTCAAT
* * * **
3683027 TTTTGTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATACTGA
1 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGA
* * * * * *
3683092 GGTATTTTCTATTTTTTACTTTTTT-CAAAAATTAACTCATAATCCGAGAG
66 GGTATTTTC-AATTTCTACTTTTTTAAAAAAATCAACTCATATTACGAGAG
3683142 ATAAGTTGAA
Statistics
Matches: 242, Mismatches: 26, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
154 76 0.31
155 154 0.64
156 12 0.05
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (155 bp):
TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGA
GGTATTTTCAATTTCTACTTTTTTAAAAAAATCAACTCATATTACGAGAGGTGAGTGGAGCCTCA
CGTCACACACTGAGGTATTTTCAAT
Found at i:3683107 original size:77 final size:77
Alignment explanation
Indices: 3682718--3683105 Score: 587
Period size: 77 Copynumber: 5.0 Consensus size: 77
3682708 ATATTTCTAC
* * *
3682718 TTCTGTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAATGGAGCCTCGGGTCACACGCTGA
1 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGTCACACGCTGA
3682783 GGTATTTTCAAT
66 GGTATTTTCAAT
* * *
3682795 TTCTGTTTTTCAAAAAAATCAACTAATATTACGAGAGGTGAGTGGAGCCTCACGTCACACGCTGA
1 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGTCACACGCTGA
3682860 GGTATTTTCAAT
66 GGTATTTTCAAT
* * * *
3682872 TTCTGTTTTTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGA
1 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGTCACACGCTGA
3682937 GGTATTTTCAAT
66 GGTATTTTCAAT
* * **
3682949 TTCTATTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGTCACATACTG
1 TTCT-GTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGTCACACGCTG
3683014 AGGTATTTTCAAT
65 AGGTATTTTCAAT
* * * **
3683027 TTTTGTTTTCCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATACTGA
1 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGTCACACGCTGA
*
3683092 GGTATTTTCTAT
66 GGTATTTTCAAT
3683104 TT
1 TT
3683106 TTTACTTTTT
Statistics
Matches: 283, Mismatches: 27, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
77 215 0.76
78 68 0.24
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (77 bp):
TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGTCACACGCTGA
GGTATTTTCAAT
Found at i:3684158 original size:10 final size:10
Alignment explanation
Indices: 3684121--3684160 Score: 53
Period size: 10 Copynumber: 3.7 Consensus size: 10
3684111 ATTGTTCTTT
3684121 AAAAATACATAA
1 AAAAATA-A-AA
3684133 AAAATATAAAA
1 AAAA-ATAAAA
3684144 AAAAATAAAA
1 AAAAATAAAA
3684154 AAAAATA
1 AAAAATA
3684161 CATTTTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 13 0.48
11 6 0.22
12 5 0.19
13 3 0.11
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAATAAAA
Found at i:3684733 original size:3 final size:3
Alignment explanation
Indices: 3684725--3685206 Score: 233
Period size: 3 Copynumber: 160.0 Consensus size: 3
3684715 CTTTATTAAA
3684725 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAGT GTA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T -TAT
* * *
3684771 TAT T-T TTT TAT TGT ATAT GTA- TAT GTA- TAT ATAT T-T ATAT ATAA
1 TAT TAT TAT TAT TAT -TAT -TAT TAT -TAT TAT -TAT TAT -TAT -TAT
** *
3684815 TAT TAT T-T TAAT TGC T-T TAT T-T TAT TAT TTT TAT TA- TAT T-T
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
** * * *
3684856 GCT T-T TTT GTAT T-T CAA TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
3684900 TAT TAT TAT TAT TAT TAGT GTA- TAT TAT TTT TAT TAT ATAT GTAGG
1 TAT TAT TAT TAT TAT TA-T -TAT TAT TAT TAT TAT TAT -TAT -TA-T
* * *
3684946 TA- TAT GTA- TACA TAT T-T ATAT ATAG TAT TAT T-T T-T TAT TAC T-T
1 TAT TAT -TAT TA-T TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
3684989 TAT T-T TGA- TAT TTT TAT CA- TAT TAT ATAT GTTT TTT GTAT T-T CAA
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT -TAT TAT TAT
* * * * * * *
3685034 TAT TAT TAC TAT TAT CAT CAT CAT CAT CAT CAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
3685082 TAT TAT TAT TAT TAT TAT TAT TAT TACCT T-T T-T TAC TAT CTAAT GTAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA--T TAT TAT TAT TAT -T-AT -TAT
3685130 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* **
3685178 TAT T-G TAT TAT TGC TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
3685207 ATTTTCCATT
Statistics
Matches: 382, Mismatches: 51, Indels: 92
0.73 0.10 0.18
Matches are distributed among these distances:
2 42 0.11
3 287 0.75
4 44 0.12
5 9 0.02
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:3685399 original size:12 final size:12
Alignment explanation
Indices: 3685384--3685609 Score: 117
Period size: 12 Copynumber: 18.7 Consensus size: 12
3685374 TTATTTGTCT
*
3685384 TATTGTTATTAC
1 TATTATTATTAC
3685396 TATT-TGTATTTAC
1 TATTAT-TA-TTAC
**
3685409 CGTTATTATTAC
1 TATTATTATTAC
*
3685421 TATTATTTTTAC
1 TATTATTATTAC
*
3685433 TTTTATTACTATTAC
1 ---TATTATTATTAC
*
3685448 TATTACTATT--
1 TATTATTATTAC
3685458 TATTATTATTAC
1 TATTATTATTAC
*
3685470 TATTATTATCAC
1 TATTATTATTAC
*
3685482 TATTATTTTTA-
1 TATTATTATTAC
*
3685493 T-TTTTTATTAC
1 TATTATTATTAC
*
3685504 TATTATCATTTTA-
1 TATTAT--TATTAC
* ** *
3685517 AAACATTGTTAC
1 TATTATTATTAC
*
3685529 TATTATTCTTTTAC
1 TATTA-T-TATTAC
* *
3685543 CA-T-TTAATAC
1 TATTATTATTAC
*
3685553 ATATTATTATTAT
1 -TATTATTATTAC
*
3685566 TATTATTATTAT
1 TATTATTATTAC
*
3685578 TATTATTATTAT
1 TATTATTATTAC
*
3685590 TATTATTATTAT
1 TATTATTATTAC
3685602 TATTATTA
1 TATTATTA
3685610 GTGTATGTTT
Statistics
Matches: 167, Mismatches: 29, Indels: 36
0.72 0.12 0.16
Matches are distributed among these distances:
10 20 0.12
11 9 0.05
12 99 0.59
13 18 0.11
14 11 0.07
15 10 0.06
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:3685419 original size:3 final size:3
Alignment explanation
Indices: 3685411--3685609 Score: 131
Period size: 3 Copynumber: 67.0 Consensus size: 3
3685401 GTATTTACCG
* * * * *
3685411 TTA TTA TTA CTA TTA TTT TTA CTT- TTA TTA CTA TTA CTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
3685456 TTTA TTA TTA TTA CTA TTA TTA TCA CTA TTA TTT TTA TT- TT- TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * ** * * * **
3685500 TTA CTA TTA TCA TT- TTA -AA ACA TTG TTA CTA TTA TTC TT- TTA CCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
3685545 TTTA ATA CATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 -TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
3685592 TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
3685610 GTGTATGTTT
Statistics
Matches: 150, Mismatches: 37, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
2 11 0.07
3 131 0.87
4 8 0.05
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:3685509 original size:34 final size:34
Alignment explanation
Indices: 3685415--3685509 Score: 97
Period size: 34 Copynumber: 2.8 Consensus size: 34
3685405 TTACCGTTAT
* * * *
3685415 TATTACTA-TTATTTTTACTT-TTATTACTATTAC
1 TATTACTATTTATTATTA-TTACTATTATTATCAC
3685448 TATTACTATTTATTATTATTACTATTATTATCAC
1 TATTACTATTTATTATTATTACTATTATTATCAC
* *
3685482 TATTA-TTTTTATTTTTTATTACTATTAT
1 TATTACTATTTA-TTATTATTACTATTAT
3685510 CATTTTAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
33 15 0.28
34 38 0.72
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (34 bp):
TATTACTATTTATTATTATTACTATTATTATCAC
Found at i:3688395 original size:23 final size:23
Alignment explanation
Indices: 3688365--3688417 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
3688355 TCCAAATAAT
*
3688365 ATTAAAAGCGGCAGCGGAACAAC
1 ATTAAAAGCAGCAGCGGAACAAC
*
3688388 ATTAAAAGCAGCAGTGGAACAAC
1 ATTAAAAGCAGCAGCGGAACAAC
3688411 ATTAAAA
1 ATTAAAA
3688418 ACGATAGTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.49, C:0.17, G:0.21, T:0.13
Consensus pattern (23 bp):
ATTAAAAGCAGCAGCGGAACAAC
Found at i:3690029 original size:112 final size:112
Alignment explanation
Indices: 3689832--3690043 Score: 352
Period size: 112 Copynumber: 1.9 Consensus size: 112
3689822 GGGTTGTAAT
* * * * *
3689832 AACATAAGATTCAATCATTATGATGCTCAGCTAGATATTTATACATCTCGAAAGCTGCCCTTTTG
1 AACATAAGATCCAATCATCATGATGCTCAGCTAGATATCTATACATCTCGAAAGCTACCATTTTG
3689897 TCTTTATAAGGCAGGAAAGTCGAGCTAATTTTTATAAAGATGATGAC
66 TCTTTATAAGGCAGGAAAGTCGAGCTAATTTTTATAAAGATGATGAC
* *
3689944 AACATAAGATCCAATCATCATGATGCTCAGCTAGATATCTGTACATCTCTAAAGCTACCATTTTG
1 AACATAAGATCCAATCATCATGATGCTCAGCTAGATATCTATACATCTCGAAAGCTACCATTTTG
*
3690009 TCTTTGTAAGGCAGGAAAGTCGAGCTAATTTTTAT
66 TCTTTATAAGGCAGGAAAGTCGAGCTAATTTTTAT
3690044 CTCATCCCTT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
112 92 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (112 bp):
AACATAAGATCCAATCATCATGATGCTCAGCTAGATATCTATACATCTCGAAAGCTACCATTTTG
TCTTTATAAGGCAGGAAAGTCGAGCTAATTTTTATAAAGATGATGAC
Found at i:3692574 original size:33 final size:33
Alignment explanation
Indices: 3692537--3692603 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
3692527 GCTTGACTGT
3692537 CGGCTAACTATCCTGTCCCATCACCCATACCGC
1 CGGCTAACTATCCTGTCCCATCACCCATACCGC
3692570 CGGCTAACTATCCTGTCCCATCACCCATACCGC
1 CGGCTAACTATCCTGTCCCATCACCCATACCGC
3692603 C
1 C
3692604 ACTGGCCACC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.21, C:0.46, G:0.12, T:0.21
Consensus pattern (33 bp):
CGGCTAACTATCCTGTCCCATCACCCATACCGC
Found at i:3692754 original size:25 final size:24
Alignment explanation
Indices: 3692721--3692776 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 24
3692711 CTCTCTGGAC
3692721 AAAAA-AAAATAAAAAAGAGATTCA
1 AAAAATAAAATAAAAAA-AGATTCA
3692745 AAAAATAAAATAAAAAAAGATTCA
1 AAAAATAAAATAAAAAAAGATTCA
3692769 AGAAAATA
1 A-AAAATA
3692777 GGAGCAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 13 0.43
25 17 0.57
ACGTcount: A:0.75, C:0.04, G:0.07, T:0.14
Consensus pattern (24 bp):
AAAAATAAAATAAAAAAAGATTCA
Found at i:3692759 original size:24 final size:25
Alignment explanation
Indices: 3692721--3692776 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
3692711 CTCTCTGGAC
*
3692721 AAAAA-AAAATAAAAAAGAGATTCA
1 AAAAATAAAATAAAAAAAAGATTCA
3692745 AAAAATAAAAT-AAAAAAAGATTCA
1 AAAAATAAAATAAAAAAAAGATTCA
3692769 AGAAAATA
1 A-AAAATA
3692777 GGAGCAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 18 0.62
25 11 0.38
ACGTcount: A:0.75, C:0.04, G:0.07, T:0.14
Consensus pattern (25 bp):
AAAAATAAAATAAAAAAAAGATTCA
Found at i:3693601 original size:22 final size:20
Alignment explanation
Indices: 3693576--3693624 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 20
3693566 TTAATTTTAA
3693576 TATTATATATACTATTATATTT
1 TATTATAT-TACTATTATA-TT
*
3693598 TATTACTATTATTATTATATT
1 TATTA-TATTACTATTATATT
3693619 TATTAT
1 TATTAT
3693625 TTATTAGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 7 0.28
22 14 0.56
23 3 0.12
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTATATTACTATTATATT
Found at i:3693606 original size:16 final size:17
Alignment explanation
Indices: 3693575--3693630 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
3693565 TTTAATTTTA
3693575 ATATTATATATACTATT
1 ATATTATATATACTATT
*
3693592 ATATTTTAT-TACTATT
1 ATATTATATATACTATT
* *
3693608 ATTATTATATTTATTATT
1 A-TATTATATATACTATT
3693626 -TATTA
1 ATATTA
3693631 GCATTAGTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 13 0.38
17 15 0.44
18 6 0.18
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (17 bp):
ATATTATATATACTATT
Found at i:3693621 original size:28 final size:30
Alignment explanation
Indices: 3693576--3693643 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 30
3693566 TTAATTTTAA
3693576 TATTATATATACTATTA-TATTTTATTA-CTAT
1 TATTAT-TATACTATTATTA-TTTATTAGC-AT
3693607 TATTATTATA-T-TTATTATTTATTAGCAT
1 TATTATTATACTATTATTATTTATTAGCAT
*
3693635 TAGTATTAT
1 TATTATTAT
3693644 TTTCACTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
28 20 0.59
29 4 0.12
30 4 0.12
31 6 0.18
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (30 bp):
TATTATTATACTATTATTATTTATTAGCAT
Found at i:3693629 original size:22 final size:22
Alignment explanation
Indices: 3693588--3693630 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
3693578 TTATATATAC
3693588 TATTATATTTTATTACTATTAT
1 TATTATATTTTATTACTATTAT
3693610 TATTATA-TTTATTA-T-TTAT
1 TATTATATTTTATTACTATTAT
3693629 TA
1 TA
3693631 GCATTAGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 1 0.05
21 7 0.33
22 7 0.33
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTATATTTTATTACTATTAT
Found at i:3693636 original size:22 final size:21
Alignment explanation
Indices: 3693589--3693641 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
3693579 TATATATACT
**
3693589 ATTATATTTTATTACTATTATT
1 ATTATA-TTTATTACTATTAGC
*
3693611 ATTATATTTATTATTTATTAGC
1 ATTATATTTATTA-CTATTAGC
3693633 ATTAGTATT
1 ATTA-TATT
3693642 ATTTTCACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 7 0.27
22 15 0.58
23 4 0.15
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (21 bp):
ATTATATTTATTACTATTAGC
Found at i:3693716 original size:18 final size:18
Alignment explanation
Indices: 3693682--3693715 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3693672 TTATATAGTA
3693682 TTATTAATAGTTTTTTTG
1 TTATTAATAGTTTTTTTG
*
3693700 TTATTATTA-TTTTTTT
1 TTATTAATAGTTTTTTT
3693716 TAACCTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TTATTAATAGTTTTTTTG
Found at i:3693751 original size:24 final size:24
Alignment explanation
Indices: 3693722--3693837 Score: 67
Period size: 24 Copynumber: 4.7 Consensus size: 24
3693712 TTTTTAACCT
3693722 TATATTATGTATATATTCTTTTAA
1 TATATTATGTATATATTCTTTTAA
* * *** *
3693746 TATATTAGGTATATTTTAAATT-C
1 TATATTATGTATATATTCTTTTAA
* *
3693769 TATATTACGTATATATATATTTTTATA
1 TATATTATGTATATAT-T-CTTTTA-A
* *
3693796 CTATATTATGTATACATTC-TTAAA
1 -TATATTATGTATATATTCTTTTAA
3693820 TATTATTA-GTTATATATT
1 TA-TATTATG-TATATATT
3693838 TTTATGTTAT
Statistics
Matches: 68, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
23 17 0.25
24 31 0.46
25 5 0.07
27 1 0.01
28 14 0.21
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (24 bp):
TATATTATGTATATATTCTTTTAA
Found at i:3693841 original size:48 final size:48
Alignment explanation
Indices: 3693782--3693905 Score: 187
Period size: 48 Copynumber: 2.6 Consensus size: 48
3693772 ATTACGTATA
*
3693782 TATATATTTTTATACTAT-ATTATGTATACATTCTTAAATATTATTAGT
1 TATATATTTTTATACTATCA-TATATATACATTCTTAAATATTATTAGT
**
3693830 TATATATTTTTATGTTATCATATATATACATTCTTAAATATTATTAGT
1 TATATATTTTTATACTATCATATATATACATTCTTAAATATTATTAGT
**
3693878 TATATATTTTTATGTTATCATATATATA
1 TATATATTTTTATACTATCATATATATA
3693906 TGTGTCTAAT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
48 71 0.99
49 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (48 bp):
TATATATTTTTATACTATCATATATATACATTCTTAAATATTATTAGT
Found at i:3693881 original size:24 final size:24
Alignment explanation
Indices: 3693806--3693881 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
3693796 CTATATTATG
3693806 TATACATTCTTAAATATTATTAGT
1 TATACATTCTTAAATATTATTAGT
* * *
3693830 TATATATT-TT-TATGTTATCATA-T
1 TATACATTCTTAAATATTAT--TAGT
3693853 ATATACATTCTTAAATATTATTAGT
1 -TATACATTCTTAAATATTATTAGT
3693878 TATA
1 TATA
3693882 TATTTTTATG
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
22 6 0.15
23 3 0.08
24 22 0.55
25 3 0.08
26 6 0.15
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.53
Consensus pattern (24 bp):
TATACATTCTTAAATATTATTAGT
Found at i:3694230 original size:21 final size:22
Alignment explanation
Indices: 3694192--3694238 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
3694182 AATCAATACT
3694192 TATATGTATATATCTTTA-ATGAA
1 TATATGTATATA-CTTTATAT-AA
*
3694215 TATATGTATGTA-TTTATATAA
1 TATATGTATATACTTTATATAA
3694236 TAT
1 TAT
3694239 TATTAATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 9 0.41
22 2 0.09
23 11 0.50
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (22 bp):
TATATGTATATACTTTATATAA
Found at i:3694316 original size:24 final size:26
Alignment explanation
Indices: 3694274--3694343 Score: 81
Period size: 24 Copynumber: 2.7 Consensus size: 26
3694264 TTCATTATCA
*
3694274 TTAATATGTATATACTATGTAAATATT
1 TTAATATATATATA-TATGTAAATATT
*
3694301 TTAATAT-TATAT-TATGTATATATT
1 TTAATATATATATATATGTAAATATT
3694325 TATATATATATATATATAT
1 T-TA-ATATATATATATAT
3694344 ATTTTTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
24 12 0.32
25 2 0.05
26 9 0.24
27 12 0.32
28 3 0.08
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.53
Consensus pattern (26 bp):
TTAATATATATATATATGTAAATATT
Found at i:3694330 original size:2 final size:2
Alignment explanation
Indices: 3694304--3694345 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
3694294 AAATATTTTA
* *
3694304 AT AT -T AT AT -T AT GT AT AT AT TT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3694344 AT
1 AT
3694346 TTTTTTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (2 bp):
AT
Found at i:3694601 original size:3 final size:3
Alignment explanation
Indices: 3694593--3694882 Score: 93
Period size: 3 Copynumber: 94.7 Consensus size: 3
3694583 TTTCTAATAC
** * *
3694593 TAT TAT TAT TAT TAT TAT TAT TAT TAT TATT TAT CGT TAT TAT AAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * *
3694639 TAT T-T T-T TAT TCT TAT TAA TA- TAT TAT TAT TAT TGT T-T TCCACCT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T--A--T
* * * * *
3694684 TAT TAT TAT TAC TAG TAT TAT CA- TCT TGT TAT TAGGT TAAT TAAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA--T T-AT T-AT TAT
* * * *
3694731 TAT ATAGG TAT TAT TA- TAT TAT TA- TACA TAT TCT CTCT ATATT TACT
1 TAT -TA-T TAT TAT TAT TAT TAT TAT TA-T TAT TAT -TAT -TA-T TA-T
* * * *
3694778 TA- TAT TAT TACT TA- AAT TAT TAT CAT TAT TAT CAT TAT AATT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* * * *
3694823 TAC T-T TAT TAT TAT CAT TAT TAC TAC TAT TA- TAT TAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
3694868 TAT TTT TAT TCAT TA
1 TAT TAT TAT T-AT TA
3694883 CTCTTTAAAT
Statistics
Matches: 216, Mismatches: 43, Indels: 56
0.69 0.14 0.18
Matches are distributed among these distances:
2 22 0.10
3 155 0.72
4 32 0.15
5 4 0.02
6 1 0.00
7 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:3694842 original size:45 final size:44
Alignment explanation
Indices: 3694739--3694854 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 44
3694729 TTTATATAGG
*
3694739 TATTATTATATTATTATACATATTCTCTCTATATTTACTTATAT
1 TATTATTATATTATTATACATATTATCTCTATATTTACTTATAT
*
3694783 TATTACTTAAATTATTAT-CATTATTATCAT-TATAATTTA-TTACT-T
1 TATTA-TTATATTATTATACA-TATTATC-TCTAT-ATTTACTTA-TAT
3694828 TATTATTATCATTATTACTAC-TATTAT
1 TATTATTAT-ATTATTA-TACATATTAT
3694855 ATTATTATTA
Statistics
Matches: 61, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
44 10 0.16
45 42 0.69
46 8 0.13
47 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (44 bp):
TATTATTATATTATTATACATATTATCTCTATATTTACTTATAT
Found at i:3694857 original size:23 final size:23
Alignment explanation
Indices: 3694823--3694867 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
3694813 TATAATTTAT
3694823 TACTTTATTATTATCATTATTAC
1 TACTTTATTATTATCATTATTAC
*
3694846 TACTATTA-TATTATTATTATTA
1 TACT-TTATTATTATCATTATTA
3694868 TATTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (23 bp):
TACTTTATTATTATCATTATTAC
Found at i:3698092 original size:21 final size:20
Alignment explanation
Indices: 3698059--3698101 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
3698049 TCCAACAGCC
3698059 AAAATTCACTTATAGCTAGG
1 AAAATTCACTTATAGCTAGG
* *
3698079 AAAATATCTCTTATAGCTTGG
1 AAAAT-TCACTTATAGCTAGG
3698100 AA
1 AA
3698102 TTATGACAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (20 bp):
AAAATTCACTTATAGCTAGG
Found at i:3704204 original size:2 final size:2
Alignment explanation
Indices: 3704197--3704222 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3704187 CATGAAAAAT
3704197 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
3704223 AAGATAGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3705514 original size:24 final size:22
Alignment explanation
Indices: 3705461--3705515 Score: 58
Period size: 25 Copynumber: 2.4 Consensus size: 22
3705451 ATATTAAAAA
*
3705461 ATAAAAA-ATATTTTTTTATAT
1 ATAAAAATATATTTTTTTATAC
*
3705482 TTAATAAATATAATTATTTTTATAC
1 ATAA-AAATAT-ATT-TTTTTATAC
3705507 ATAAAAATA
1 ATAAAAATA
3705516 AAATAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
21 3 0.11
22 3 0.11
23 2 0.07
24 8 0.30
25 11 0.41
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAAAAATATATTTTTTTATAC
Found at i:3707890 original size:20 final size:19
Alignment explanation
Indices: 3707843--3707913 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 19
3707833 GTCCCAAAAT
3707843 TATTATTTAAATTTTTTTAAA
1 TATT-TTTAAATTTTTTT-AA
* * *
3707864 AAATTTTAACTTTTTTTATA
1 TATTTTTAAATTTTTTTA-A
3707884 TATTTTTAGAATTTTTTGTAA
1 TATTTTTA-AATTTTTT-TAA
3707905 T-TTTTTAAA
1 TATTTTTAAA
3707914 AATCAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
19 3 0.07
20 25 0.61
21 11 0.27
22 2 0.05
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (19 bp):
TATTTTTAAATTTTTTTAA
Found at i:3707952 original size:19 final size:20
Alignment explanation
Indices: 3707928--3707972 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
3707918 AAAATTTTGA
*
3707928 AATTTTTATAAA-TATTATG
1 AATTTTTAAAAATTATTATG
*
3707947 AA-TTTTAAAAATTATTTTG
1 AATTTTTAAAAATTATTATG
3707966 AATTTTT
1 AATTTTT
3707973 GTTGTGAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 8 0.36
19 10 0.45
20 4 0.18
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (20 bp):
AATTTTTAAAAATTATTATG
Found at i:3710789 original size:28 final size:27
Alignment explanation
Indices: 3710744--3710799 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
3710734 AAGAATGTAC
* *
3710744 ATATTTAATAAATAATAAAAATAGTGT
1 ATATTTAATAAAAAATAAAAATAATGT
* *
3710771 ATATTTTATAATAAAATAAAGATAATGT
1 ATATTTAATAA-AAAATAAAAATAATGT
3710799 A
1 A
3710800 AATAAATATG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (27 bp):
ATATTTAATAAAAAATAAAAATAATGT
Found at i:3710891 original size:17 final size:17
Alignment explanation
Indices: 3710856--3710908 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
3710846 ATAAAAATGT
**
3710856 ATATAATATATAA-AAA
1 ATATAATATGGAATAAA
* *
3710872 ATATCATATGGAGTAAA
1 ATATAATATGGAATAAA
*
3710889 ATATAATATGTAATAAA
1 ATATAATATGGAATAAA
3710906 ATA
1 ATA
3710909 ATATGAAAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
16 9 0.31
17 20 0.69
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (17 bp):
ATATAATATGGAATAAA
Found at i:3712384 original size:17 final size:17
Alignment explanation
Indices: 3712362--3712394 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3712352 GTATTCGGGC
3712362 TTGGGT-GTAACCAGGTT
1 TTGGGTAGTAA-CAGGTT
3712379 TTGGGTAGTAACAGGT
1 TTGGGTAGTAACAGGT
3712395 CTGTTGGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.21, C:0.09, G:0.36, T:0.33
Consensus pattern (17 bp):
TTGGGTAGTAACAGGTT
Found at i:3715048 original size:44 final size:44
Alignment explanation
Indices: 3714977--3715621 Score: 373
Period size: 44 Copynumber: 14.9 Consensus size: 44
3714967 GCTATGTTGA
* * * * * *
3714977 TATCCTCGACCTGTTCTCTGTCCATACAGAGACGCCAAGTCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
3715021 TATCTTTGATTTGCTCTCTGACAATACAGAGACGCCAAATCTTC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
**
3715065 T-TCTTCGATCTATTCTCTGACAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
*
3715108 T-TCTTCGGTCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * * *
3715151 T-TCTTGGATTTGTTC-CTCGTCAAATAC-GAAGATGCCAAA--T-C
1 TATCTTCGATCTGCTCTCT-GAC-AATACAG-AGACGCCAAATCTGC
* * *
3715192 -ATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * *
3715235 TATCTTCGATCTGCTCTCCGACAATATAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* *
3715279 TATCTTCGATCTACTCTCTGCCAATACAGAGACGCCAAA--T-C
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * * * * *
3715320 -ATTTTAGATTTGCT-TC-AACGTAA-ACGCGTGAAAGCCAAATCTGC
1 TATCTTCGATCTGCTCTCTGAC--AATAC-AGAG-ACGCCAAATCTGC
* * *
3715364 TATATCTTCGATTTGCTCCTCAT-A-AACACA-AGGATGCCAAA--T-C
1 --TATCTTCGATCTGCT-CTC-TGACAATACAGA-GACGCCAAATCTGC
* * * *
3715407 -ATCTTCGATTTGTTCTCTGATAATACAGAGATGCCAAATCTG-
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * **
3715449 TCATCTTTGATTTGCTCTCTGACAATATAGAGATACCAAA--T-C
1 T-ATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
* * * * * *
3715491 -ATCTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAGC
1 TATCTTCGATCTGCTCTCTGAC--AATACA-GAG-ACGCCAAATCTGC
* * *
3715535 TATGTCTTCGATCTGCTCCCTGTCGAATACAGAGATGCCAAATCTG-
1 TA--TCTTCGATCTGCTCTCTGAC-AATACAGAGACGCCAAATCTGC
* * * *
3715581 TTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATC
1 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATC
3715622 ATCTTGGATC
Statistics
Matches: 473, Mismatches: 80, Indels: 97
0.73 0.12 0.15
Matches are distributed among these distances:
38 4 0.01
39 12 0.03
40 73 0.15
41 29 0.06
42 9 0.02
43 113 0.24
44 174 0.37
45 1 0.00
46 8 0.02
47 36 0.08
48 7 0.01
49 6 0.01
50 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (44 bp):
TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGC
Found at i:3715305 original size:128 final size:127
Alignment explanation
Indices: 3715000--3715333 Score: 395
Period size: 128 Copynumber: 2.6 Consensus size: 127
3714990 TTCTCTGTCC
* * *
3715000 ATACAGAGACGCCAAGTCTGCTATCTTTGATTTGCTCTCTGACAATACAGAGACGCCAAATCTTC
1 ATACAGAGACGCCAAATCTGCTATCTTCGATTTGCTCTCTGCCAATACAGAGACGCCAAA---TC
* * ** * *
3715065 TTCTTCGATCTATTCTCTGACAATACAGAGACGCCAAATCTGCTTCTTCGGTCTGCTCTCTGACA
63 ATCTTAGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTTCTTCGATCTGCTCTCCGACA
* * * *
3715130 ATACAGAGACGCCAAATCTGCT-TCTTGGATTTGTTC-CTCGTCAAATAC-GAAGATGCCAAATC
1 ATACAGAGACGCCAAATCTGCTATCTTCGATTTGCTCTCT-G-CCAATACAG-AGACGCCAAATC
* *
3715192 ATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCCGAC
63 ATCTTAGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-TCTTCGATCTGCTCTCCGAC
3715257 A
127 A
* * * * *
3715258 ATATAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCCAATACAGAGACGCCAAATCATT
1 ATACAGAGACGCCAAATCTGCTATCTTCGATTTGCTCTCTGCCAATACAGAGACGCCAAATCATC
*
3715323 TTAGATTTGCT
66 TTAGATCTGCT
3715334 TCAACGTAAA
Statistics
Matches: 173, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
127 40 0.23
128 70 0.40
129 26 0.15
130 37 0.21
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (127 bp):
ATACAGAGACGCCAAATCTGCTATCTTCGATTTGCTCTCTGCCAATACAGAGACGCCAAATCATC
TTAGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTTCTTCGATCTGCTCTCCGACA
Found at i:3715411 original size:215 final size:213
Alignment explanation
Indices: 3714991--3715495 Score: 569
Period size: 215 Copynumber: 2.4 Consensus size: 213
3714981 CTCGACCTGT
* * * * *
3714991 TCTCTGTCCATACAGAGACGCCAAGTCTGCTATCTTTGATTTGCTCTCTGACAATACAGAGACGC
1 TCTCTGACAATACAGAGATGCCAAATCTGCTATCTTTGATTTGCTCTCTGACAATATAGAGACGC
* * * *
3715056 CAAATCTTCTTCTTCGATCTATTCTCTGACAATACAGAGACGCCAAATCTGCTTCTTCGGTCTGC
66 CAAATCTTCTTCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATC-GATTCTTAGATCTGC
* * * * * *
3715121 TCTCTGACAATACAGAGACGCCAAATCTGCTTCTTGGATTTGTTCCTCGTCAAATACGAAGATGC
130 TCTCTAACAATACAGAGAAGCCAAATCTGCTTCTTCGATTTGCTCCTCATCAAACACGAAGATGC
3715186 CAAATCATCTTAGATCTGC
195 CAAATCATCTTAGATCTGC
* * * *
3715205 TCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCCGACAATATAGAGACGC
1 TCTCTGACAATACAGAGATGCCAAATCTGCTATCTTTGATTTGCTCTCTGACAATATAGAGACGC
* *
3715270 CAAATCTGT-TATCTTCGATCTACTCTCTGCCAATACAGAGACGCCAAATC-ATT-TTAGATTTG
66 CAAATCT-TCT-TCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCGATTCTTAGATCTG
* *
3715332 CT-TC-AACGTAA-ACGCGTGAAAGCCAAATCTGCTATATCTTCGATTTGCTCCTCAT-AAACAC
129 CTCTCTAAC--AATAC-AGAG-AAGCCAAATCTGC--T-TCTTCGATTTGCTCCTCATCAAACAC
* * *
3715393 -AAGGATGCCAAATCATCTTCGATTTGT
187 GAA-GATGCCAAATCATCTTAGATCTGC
* **
3715420 TCTCTGATAATACAGAGATGCCAAATCTG-TCATCTTTGATTTGCTCTCTGACAATATAGAGATA
1 TCTCTGACAATACAGAGATGCCAAATCTGCT-ATCTTTGATTTGCTCTCTGACAATATAGAGACG
*
3715484 CCAAATCATCTT
65 CCAAATCTTCTT
3715496 AGATTTGCTT
Statistics
Matches: 245, Mismatches: 34, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
210 2 0.01
211 4 0.02
212 12 0.05
213 14 0.06
214 69 0.28
215 128 0.52
216 16 0.07
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.31
Consensus pattern (213 bp):
TCTCTGACAATACAGAGATGCCAAATCTGCTATCTTTGATTTGCTCTCTGACAATATAGAGACGC
CAAATCTTCTTCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCGATTCTTAGATCTGCT
CTCTAACAATACAGAGAAGCCAAATCTGCTTCTTCGATTTGCTCCTCATCAAACACGAAGATGCC
AAATCATCTTAGATCTGC
Found at i:3715626 original size:171 final size:170
Alignment explanation
Indices: 3715021--3715635 Score: 522
Period size: 171 Copynumber: 3.6 Consensus size: 170
3715011 CCAAGTCTGC
* * * * * * * *
3715021 TATCTTTGATTTGCTCTCTGACAATACAGAGACGCCAAATCT-TCTTCTTCGATCTATTCTCTGA
1 TATCTTCGATCTGCTCCCTGTCAATACAGAGATGCCAAATCTGT-ATCTTCGATTTGTTCTCTGA
* * * * *
3715085 CAATACAGAGACGCCAAATCTGCTTCTTCGGTCTGCTCTCTGACAATACAGAGACGCCAAATCTG
65 CAATACAGAGATGCCAAA--T-CATCTTCGATCTACTCTCTGACAATACAGAGACACCAAA--T-
* * ** *
3715150 CTTCTTGGATTTG-TTCCTCGTCAAATAC--GAAGATGCCAAAT---C--
124 CATCTTAGATTTGCTTCAACGT-AAACACGTGAA-A-GCCAAATCAGCTA
* * * * * * *
3715192 -ATCTTAGATCTGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTCGATCTGCTCTCCGA
1 TATCTTCGATCTGCTCCCTGTCAATACAGAGATGCCAAATCTG-TATCTTCGATTTGTTCTCTGA
* * * *
3715256 CAATATAGAGACGCCAAATCTGTTATCTTCGATCTACTCTCTGCCAATACAGAGACGCCAAATCA
65 CAATACAGAGATGCCAAATC----ATCTTCGATCTACTCTCTGACAATACAGAGACACCAAATCA
* * *
3715321 TTTTAGATTTGCTTCAACGTAAACGCGTGAAAGCCAAATCTGCTA
126 TCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
* * * *
3715366 TATCTTCGATTTGCT-CCTCATAAACACA-AGGATGCCAAATC---ATCTTCGATTTGTTCTCTG
1 TATCTTCGATCTGCTCCCT-GTCAATACAGA-GATGCCAAATCTGTATCTTCGATTTGTTCTCTG
* * * * * *
3715426 ATAATACAGAGATGCCAAATCTGTCATCTTTGATTTGCTCTCTGACAATATAGAGATACCAAATC
64 ACAATACAGAGATGCCAAA----TCATCTTCGATCTACTCTCTGACAATACAGAGACACCAAATC
3715491 ATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
125 ATCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
* *
3715537 TGTCTTCGATCTGCTCCCTGTCGAATACAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGA
1 TATCTTCGATCTGCTCCCTGTC-AATACAGAGATGCCAAATCTGTATCTTCGATTTGTTCTCTGA
*
3715602 CAATACAGAGATGCCAAATCATCTTGGATCTACT
65 CAATACAGAGATGCCAAATCATCTTCGATCTACT
3715636 TCAGTGTAAA
Statistics
Matches: 363, Mismatches: 54, Indels: 54
0.77 0.11 0.11
Matches are distributed among these distances:
168 1 0.00
169 22 0.06
170 45 0.12
171 171 0.47
172 55 0.15
173 1 0.00
174 3 0.01
175 65 0.18
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (170 bp):
TATCTTCGATCTGCTCCCTGTCAATACAGAGATGCCAAATCTGTATCTTCGATTTGTTCTCTGAC
AATACAGAGATGCCAAATCATCTTCGATCTACTCTCTGACAATACAGAGACACCAAATCATCTTA
GATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTA
Found at i:3718680 original size:29 final size:30
Alignment explanation
Indices: 3718633--3718700 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
3718623 TGGCCCAAGA
* *
3718633 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
3718663 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
3718693 GCAAATAT
1 GTAAATAT
3718701 TTTAAGAGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:3721174 original size:46 final size:46
Alignment explanation
Indices: 3721127--3721308 Score: 222
Period size: 46 Copynumber: 4.0 Consensus size: 46
3721117 GCTCTCTGAT
* * * *
3721127 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGACAACATGAC
* *
3721173 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATAACAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGACAACATGAC
** *
3721219 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGACAACATGAC
* * * * *
3721265 A-GAAAATGAGTAAGACCATAGTTTAAAGACACTATGACATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGACAACATG
3721309 TCAAAGATAA
Statistics
Matches: 119, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 1 0.01
46 118 0.99
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGACAACATGAC
Found at i:3721610 original size:16 final size:17
Alignment explanation
Indices: 3721589--3721621 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
3721579 ATGATGGAGC
3721589 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
3721605 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
3721622 TATACTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:3727473 original size:31 final size:31
Alignment explanation
Indices: 3727430--3727489 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
3727420 CCTTTTCATA
3727430 TTTCATAATTCATAACACTGGGCCGAAGCTT
1 TTTCATAATTCATAACACTGGGCCGAAGCTT
* **
3727461 TTTCATATTTCATATTACTGGGCCGAAGC
1 TTTCATAATTCATAACACTGGGCCGAAGC
3727490 CTTTACTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.35
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCTT
Found at i:3727787 original size:24 final size:24
Alignment explanation
Indices: 3727706--3727829 Score: 207
Period size: 24 Copynumber: 5.2 Consensus size: 24
3727696 GCCTAGCCTT
*
3727706 TTTTAATAACTGGGGCA-AAGCTCTT
1 TTTTAATAACTGGGGCATAAGC-C-C
3727731 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
3727755 -TTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
3727778 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
3727802 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
3727826 TTTT
1 TTTT
3727830 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
23 23 0.24
24 51 0.53
25 18 0.19
26 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (24 bp):
TTTTAATAACTGGGGCATAAGCCC
Found at i:3727906 original size:20 final size:20
Alignment explanation
Indices: 3727883--3727945 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
3727873 GAACATCTCG
*
3727883 TGTGCATATCATACATATTA
1 TGTGCATATCATACATATCA
* *
3727903 TGTGTATATCATACATGTCA
1 TGTGCATATCATACATATCA
3727923 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
3727943 TGT
1 TGT
3727946 TTATCAAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.40
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:3733927 original size:28 final size:27
Alignment explanation
Indices: 3733882--3733937 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
3733872 AAGAATGTAC
* *
3733882 ATATTTAATAAATAATAAAAATAGTGT
1 ATATTTAATAAAAAATAAAAATAATGT
* *
3733909 ATATTTTATAATAAAATAAAGATAATGT
1 ATATTTAATAA-AAAATAAAAATAATGT
3733937 A
1 A
3733938 AATAAATATG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (27 bp):
ATATTTAATAAAAAATAAAAATAATGT
Found at i:3734006 original size:17 final size:17
Alignment explanation
Indices: 3733984--3734083 Score: 63
Period size: 16 Copynumber: 5.9 Consensus size: 17
3733974 GATAAATAAA
3733984 ATAAAAATATATATATG
1 ATAAAAATATATATATG
*
3734001 ATAAAATGTATATAATAT-
1 ATAAAA-ATATAT-ATATG
3734019 ATAAAAA-ATATCATATGG
1 ATAAAAATATAT-ATAT-G
3734037 AGT-AAAATATA-ATATG
1 A-TAAAAATATATATATG
3734053 -TAATAAA-ATA-ATATG
1 ATAA-AAATATATATATG
*
3734068 AAAACAAATA-ATATAT
1 ATAA-AAATATATATAT
3734084 AAATATAGTG
Statistics
Matches: 67, Mismatches: 5, Indels: 22
0.71 0.05 0.23
Matches are distributed among these distances:
14 1 0.01
15 9 0.13
16 18 0.27
17 15 0.22
18 16 0.24
19 8 0.12
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (17 bp):
ATAAAAATATATATATG
Found at i:3734331 original size:18 final size:17
Alignment explanation
Indices: 3734310--3734370 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 17
3734300 TTTCCATATT
3734310 TAATAATAATATAACATA
1 TAATAATAATATAA-ATA
**
3734328 TAATTTTAATATAAA-A
1 TAATAATAATATAAATA
3734344 TAATAATATATATTAAATA
1 TAATAATA-ATA-TAAATA
3734363 -AATAATAA
1 TAATAATAA
3734371 AATTCAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 7 0.19
17 5 0.14
18 23 0.64
19 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATAATATAAATA
Found at i:3734352 original size:24 final size:23
Alignment explanation
Indices: 3734325--3734370 Score: 60
Period size: 21 Copynumber: 2.0 Consensus size: 23
3734315 ATAATATAAC
3734325 ATATAATTTTAATATAAAATAATA
1 ATAT-ATTTTAATATAAAATAATA
*
3734349 ATATATATTAA-AT-AAATAATA
1 ATATATTTTAATATAAAATAATA
3734370 A
1 A
3734371 AATTCAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 2 0.10
23 6 0.29
24 4 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
ATATATTTTAATATAAAATAATA
Found at i:3735542 original size:17 final size:17
Alignment explanation
Indices: 3735520--3735552 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3735510 GTATTCGGGC
3735520 TTGGGT-GTAACCGGGTT
1 TTGGGTAGTAA-CGGGTT
3735537 TTGGGTAGTAACGGGT
1 TTGGGTAGTAACGGGT
3735553 CTGCTGGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.15, C:0.09, G:0.42, T:0.33
Consensus pattern (17 bp):
TTGGGTAGTAACGGGTT
Found at i:3737557 original size:4 final size:4
Alignment explanation
Indices: 3737548--3737596 Score: 59
Period size: 4 Copynumber: 12.5 Consensus size: 4
3737538 TTAAAAAGTT
3737548 TAAA TAAA TAAA TAAA TAAA TAAA TAAA -ATAA -AAA TAAA -AAA TGAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TA-AA TAAA TAAA TAAA T-AAA
3737595 TA
1 TA
3737597 GGCAAAAACA
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
3 6 0.15
4 31 0.76
5 4 0.10
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (4 bp):
TAAA
Found at i:3737693 original size:3 final size:3
Alignment explanation
Indices: 3737687--3737962 Score: 103
Period size: 3 Copynumber: 94.0 Consensus size: 3
3737677 TAGTATGTGA
* * * * *
3737687 AAT AAT AAT AGT AA- AAA AAT AGT AAT AAT AAT ATT GAT AAT AGAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * ** * *
3737732 AAT AAT AAT ACT AAT AAT AAT AGT AGG AA- AA- AAA AAT AA- AA- AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
3737776 AAT AAT AAT AAT AAC AAT AGT ACA- AA- AAT GAC AAT AA- AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT
* * * * ***
3737818 GAT GAT AAA AAA AAT AAT AAT AAT AAT AAT GGC AAT AAT AAT ACCAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A--AT
* * * * * *
3737865 AAT AA- AAG AAA AAT AAAT AAT AAC ATGT AAAT AAT AAC AAT AAT AAC
1 AAT AAT AAT AAT AAT -AAT AAT AAT A-AT -AAT AAT AAT AAT AAT AAT
* * *
3737912 AAT AAT -AT ATT TAT AAT AAT AAT AAT AGT AA- AAT AAT AA- AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
3737956 AACT AAT
1 AA-T AAT
3737963 TTTTTAGTAA
Statistics
Matches: 205, Mismatches: 50, Indels: 36
0.70 0.17 0.12
Matches are distributed among these distances:
2 26 0.13
3 165 0.80
4 10 0.05
5 4 0.02
ACGTcount: A:0.64, C:0.04, G:0.06, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:3737695 original size:38 final size:37
Alignment explanation
Indices: 3737650--3737788 Score: 133
Period size: 38 Copynumber: 3.8 Consensus size: 37
3737640 AGAAGAAGTG
*
3737650 ATAATAATAAAAACAAAATAGTAATAATAGTATGTGAA
1 ATAATAATAAAAA-AAAATAATAATAATAGTATGTGAA
* * *
3737688 ATAATAATAGTAAAAAAATAGTAATAATAATAT-TGATA
1 ATAATAATA-AAAAAAAATAATAATAATAGTATGTGA-A
* * *
3737726 ATAGATAAT-AATAATACTAATAATAATAGTA-G-GAA
1 ATA-ATAATAAAAAAAAATAATAATAATAGTATGTGAA
* *
3737761 AAAAAAATAAAAAAAAATAATAATAATA
1 ATAATAATAAAAAAAAATAATAATAATA
3737789 ACAATAGTAC
Statistics
Matches: 83, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
34 4 0.05
35 19 0.23
36 2 0.02
37 19 0.23
38 31 0.37
39 8 0.10
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.27
Consensus pattern (37 bp):
ATAATAATAAAAAAAAATAATAATAATAGTATGTGAA
Found at i:3738406 original size:27 final size:24
Alignment explanation
Indices: 3738375--3738433 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 24
3738365 TAAATCAGAT
3738375 TTTTTTTAAAACTTCATTCTTTCTCTGC
1 TTTTTTTAAAA-TTC-TTCTTTCTC--C
3738403 TTTTTTTAAAATTCTTCTTTCTCC
1 TTTTTTTAAAATTCTTCTTTCTCC
3738427 TTTTTTT
1 TTTTTTT
3738434 CTCTGCGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 8 0.26
26 9 0.29
27 3 0.10
28 11 0.35
ACGTcount: A:0.15, C:0.19, G:0.02, T:0.64
Consensus pattern (24 bp):
TTTTTTTAAAATTCTTCTTTCTCC
Found at i:3738551 original size:6 final size:6
Alignment explanation
Indices: 3738542--3738572 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
3738532 AAAAAGTATG
3738542 TTTTAT TTTTAT TTTTAT TTTATAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTT-TAT TTTTAT
3738573 ATATATCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:3739518 original size:44 final size:44
Alignment explanation
Indices: 3739470--3739615 Score: 120
Period size: 44 Copynumber: 3.3 Consensus size: 44
3739460 CAGCCTGTTA
3739470 CCTACTTCTTAGGGGGTTAAGGCTCATCGTCTTCGATCTGTTCC
1 CCTACTTCTTAGGGGGTTAAGGCTCATCGTCTTCGATCTGTTCC
* * * * * *
3739514 CCTACTGCTTA--GGGTTATAAGATC-TGCAATCTTC-AGCCTGTTAC
1 CCTACTTCTTAGGGGGTTA-AGGCTCAT-C-GTCTTCGA-TCTGTTCC
* * *
3739558 CCTATTTCTTAGGGCGTTAAGGCTCATCGTCTTCGATCTGCTCC
1 CCTACTTCTTAGGGGGTTAAGGCTCATCGTCTTCGATCTGTTCC
** *
3739602 AATACTACTTAGGG
1 CCTACTTCTTAGGG
3739616 AGACAAGATC
Statistics
Matches: 75, Mismatches: 19, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
42 7 0.09
43 6 0.08
44 50 0.67
45 6 0.08
46 6 0.08
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (44 bp):
CCTACTTCTTAGGGGGTTAAGGCTCATCGTCTTCGATCTGTTCC
Found at i:3739577 original size:88 final size:88
Alignment explanation
Indices: 3739410--3740237 Score: 1064
Period size: 88 Copynumber: 9.5 Consensus size: 88
3739400 AGATTCGCTA
* * * * * *
3739410 TCTTCAATCTGCTCCACT-GTAACTTCAGGGAGATAAAATCTGTGAATTTCCAGCCTGTTA-CCT
1 TCTTCGATCTGCTCCACTACT-GCTT-AGGGAGACAAGATCTGT-AATTTTCAGCCTGTTACCCT
*
3739473 ACTTCTTAGGGGGTTAAGGCTCATCG
63 ACTGCTTAGGGGGTTAAGGCTCATCG
* * ** * * * *
3739499 TCTTCGATCTGTTCCCCTACTGCTTAGGGTTATAAGATCTGCAATCTTCAGCCTGTTACCCTATT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
* *
3739564 TCTTAGGGCGTTAAGGCTCATCG
66 GCTTAGGGGGTTAAGGCTCATCG
* *
3739587 TCTTCGATCTGCTCCAATACTACTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
** * *
3739652 ATTTAGGGGGTTAAGGCCCTTCG
66 GCTTAGGGGGTTAAGGCTCATCG
* * * *
3739675 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATTTTCAGCCTGTTGCCTTAGT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
* *
3739740 GCTTAGGGGGTTAAGGCCCTTCG
66 GCTTAGGGGGTTAAGGCTCATCG
* *
3739763 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATTTTCAGCCTGTTGCCCTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
* * * *
3739828 ACTTAGGGGGTTAAAGCCCTTCG
66 GCTTAGGGGGTTAAGGCTCATCG
* *
3739851 TCTTCGATCTGCTTCACTTCTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
*
3739916 GCTTAGGGGGTTAAGGCTCATCA
66 GCTTAGGGGGTTAAGGCTCATCG
* * * * * *
3739939 TCTTTGATTTGCTCCGCTATTGCTTAGGGAGACAAGATCTATAATTTTTAGCCTGTTACCCTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
*
3740004 GCTTA-GGGGTTAAAGCTCA-CTG
66 GCTTAGGGGGTTAAGGCTCATC-G
*
3740026 TCTTCGATCTGCTTCACTACTGCTTAGGGAGACAAGATCTGTAA--TTCAGCCTGTTACCCTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
*
3740089 GCTTA-GGGGTTAAGGCTCACCG
66 GCTTAGGGGGTTAAGGCTCATCG
* * *
3740111 CCTTCGATCTGCTCTACTACTGCTTAGGGAGACAAGATCTGTAA--TTC-GTCCTGTTACCCTGC
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAG-CCTGTTACCCTAC
* *
3740173 TGCTTAGAGGGTTAAGGCTCACCG
65 TGCTTAGGGGGTTAAGGCTCATCG
3740197 TCTTCGATCTGCTCCACTACTGCTTCAGGGAGACAAGATCT
1 TCTTCGATCTGCTCCACTACTGCTT-AGGGAGACAAGATCT
3740238 ATGAATTTAC
Statistics
Matches: 658, Mismatches: 74, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
84 1 0.00
85 99 0.15
86 41 0.06
87 80 0.12
88 418 0.64
89 18 0.03
90 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (88 bp):
TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
GCTTAGGGGGTTAAGGCTCATCG
Found at i:3739652 original size:44 final size:42
Alignment explanation
Indices: 3739604--3740096 Score: 169
Period size: 44 Copynumber: 11.3 Consensus size: 42
3739594 TCTGCTCCAA
*
3739604 TACTACTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCC
1 TACTGCTTAGGGAGACAAGATCT-TAATTTTCAGCCTGTT-CCC
** * ** ** ** * * *
3739648 TACTATTTAGGGGGTTAAGGCCCTTCGTCTTC-GATCTGCTCCAC
1 TACTGCTTAGGGAGACAA-GATCTTAATTTTCAG-CCTGTTCC-C
*
3739692 TACTGCTTAGGGAGACAAGATCTATAATTTTCAGCCTGTTGCCT
1 TACTGCTTAGGGAGACAAGATCT-TAATTTTCAGCCTGTT-CCC
* * ** ** ** * * *
3739736 TAGTGCTTAGGGGGTTAAGGCCCTTCGTCTTC-GATCTGCTCCAC
1 TACTGCTTAGGGAGACAA-GATCTTAATTTTCAG-CCTGTTCC-C
3739780 TACTGCTTAGGGAGACAAGATCTATAATTTTCAGCCTGTTGCCC
1 TACTGCTTAGGGAGACAAGATCT-TAATTTTCAGCCTGTT-CCC
* * ** ** * * *
3739824 TACTACTTAGGGGGTTA-AAGCCCTTCGTCTTC-GATCTGCTTCAC
1 TACTGCTTAGGGAG--ACAAGATCTTAATTTTCAG-CCTG-TTCCC
*
3739868 TTCTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCC
1 TACTGCTTAGGGAGACAAGATCT-TAATTTTCAGCCTGTT-CCC
* ** * * * * ** *
3739912 TACTGCTTAGGGGGTTAAGGCTCATCATCTTTGA-TTTGCTCCGC
1 TACTGCTTAGGGAGACAA-GATCTTAAT-TTTCAGCCTGTTCC-C
* *
3739956 TATTGCTTAGGGAGACAAGATCTATAATTTTTAGCCTGTTACCC
1 TACTGCTTAGGGAGACAAGATCT-TAATTTTCAGCCTGTT-CCC
** * * * * *
3740000 TACTGCTTAGGG-GTTAA-AGCTCACTGTCTTC-GATCTGCTTCAC
1 TACTGCTTAGGGAGACAAGATCTTAAT-T-TTCAG-CCTG-TTCCC
3740043 TACTGCTTAGGGAGACAAGATCTGTAA--TTCAGCCTGTTACCC
1 TACTGCTTAGGGAGACAAGATCT-TAATTTTCAGCCTGTT-CCC
3740085 TACTGCTTAGGG
1 TACTGCTTAGGG
3740097 GTTAAGGCTC
Statistics
Matches: 310, Mismatches: 104, Indels: 72
0.64 0.21 0.15
Matches are distributed among these distances:
41 4 0.01
42 26 0.08
43 52 0.17
44 194 0.63
45 32 0.10
46 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (42 bp):
TACTGCTTAGGGAGACAAGATCTTAATTTTCAGCCTGTTCCC
Found at i:3741516 original size:15 final size:15
Alignment explanation
Indices: 3741479--3741526 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
3741469 TGGCCTCTCA
* *
3741479 TTTTCTTCTTCTTTC
1 TTTTCTCCTTTTTTC
3741494 TTTT-TCCTTTTTTC
1 TTTTCTCCTTTTTTC
*
3741508 TTTTCTCCTTTTTTG
1 TTTTCTCCTTTTTTC
3741523 TTTT
1 TTTT
3741527 TTGTTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTCTCCTTTTTTC
Found at i:3741545 original size:9 final size:8
Alignment explanation
Indices: 3741516--3741544 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
3741506 TCTTTTCTCC
3741516 TTTTTTG-
1 TTTTTTGT
3741523 TTTTTTGT
1 TTTTTTGT
3741531 TTTTTTGT
1 TTTTTTGT
3741539 TTTTTT
1 TTTTTT
3741545 TTGGTGAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (8 bp):
TTTTTTGT
Found at i:3742077 original size:17 final size:16
Alignment explanation
Indices: 3742055--3742102 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
3742045 TTCCACTATC
3742055 CTTTTTGTTATTTTTCT
1 CTTTTT-TTATTTTTCT
*
3742072 CTTTTTTTATTTTTTT
1 CTTTTTTTATTTTTCT
*
3742088 ATTTTTTTTATTTTT
1 -CTTTTTTTATTTTT
3742103 TTATGTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.32
17 19 0.68
ACGTcount: A:0.08, C:0.06, G:0.02, T:0.83
Consensus pattern (16 bp):
CTTTTTTTATTTTTCT
Found at i:3742084 original size:8 final size:8
Alignment explanation
Indices: 3742056--3742106 Score: 66
Period size: 8 Copynumber: 6.1 Consensus size: 8
3742046 TCCACTATCC
3742056 TTTTTGTTA
1 TTTTT-TTA
* *
3742065 TTTTTCTC
1 TTTTTTTA
3742073 TTTTTTTA
1 TTTTTTTA
3742081 TTTTTTTA
1 TTTTTTTA
3742089 TTTTTTTTA
1 -TTTTTTTA
3742098 TTTTTTTA
1 TTTTTTTA
3742106 T
1 T
3742107 GTTTGTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
8 24 0.65
9 13 0.35
ACGTcount: A:0.10, C:0.04, G:0.02, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:3742085 original size:9 final size:9
Alignment explanation
Indices: 3742073--3742104 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
3742063 TATTTTTCTC
3742073 TTTTTTTA-
1 TTTTTTTAT
3742081 TTTTTTTAT
1 TTTTTTTAT
3742090 TTTTTTTAT
1 TTTTTTTAT
3742099 TTTTTT
1 TTTTTT
3742105 ATGTTTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:3742103 original size:17 final size:17
Alignment explanation
Indices: 3742073--3742106 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
3742063 TATTTTTCTC
3742073 TTTTTTTATTTTTTTAT
1 TTTTTTTATTTTTTTAT
3742090 TTTTTTTATTTTTTTAT
1 TTTTTTTATTTTTTTAT
3742107 GTTTGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTTTATTTTTTTAT
Found at i:3742118 original size:17 final size:17
Alignment explanation
Indices: 3742057--3742118 Score: 67
Period size: 16 Copynumber: 3.8 Consensus size: 17
3742047 CCACTATCCT
* *
3742057 TTTTG-TTATTTTTCTC
1 TTTTGTTTATTTTTTTA
3742073 TTTT-TTTATTTTTTTA
1 TTTTGTTTATTTTTTTA
*
3742089 TTTTTTTTATTTTTTTA
1 TTTTGTTTATTTTTTTA
3742106 TGTTTGTTT-TTTT
1 T-TTTGTTTATTTT
3742119 GAATTTGAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
16 17 0.43
17 17 0.43
18 6 0.15
ACGTcount: A:0.08, C:0.03, G:0.05, T:0.84
Consensus pattern (17 bp):
TTTTGTTTATTTTTTTA
Found at i:3745333 original size:18 final size:18
Alignment explanation
Indices: 3745310--3745346 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
3745300 AAAAAAATAA
3745310 AAAAATAAAAAATAAAAT
1 AAAAATAAAAAATAAAAT
* *
3745328 AAAAATAAGAAATGAAAT
1 AAAAATAAAAAATAAAAT
3745346 A
1 A
3745347 GGAAAAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (18 bp):
AAAAATAAAAAATAAAAT
Found at i:3745444 original size:3 final size:3
Alignment explanation
Indices: 3745438--3745730 Score: 91
Period size: 3 Copynumber: 97.0 Consensus size: 3
3745428 TAGTATGTGA
* * * * *
3745438 AAT AAT AAT AGT AA- AAA AAT AAT AGT AAT AAT AAT ATT GAT AAT AGAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * * * * *
3745486 AAT AAT AAT ACT ACT AAT AAT AGT AGT AA- AAA AAT AAA AAT ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * * * * *
3745531 AGAA AAC AAT AAT AAT AGT ACA- AA- AAT GAC AAT AA- AAT AA- GAT
1 A-AT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * ***
3745574 GAT AAT AAA AAT AA- AATT AAA AAT AAA AAT AGT AAT AAT GGC AAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
3745619 AAT AAT AAT ACCAT AAT AA- AAG AAA AAGA AAT AAT AAC ATGT AAAT
1 AAT AAT AAT A--AT AAT AAT AAT AAT AA-T AAT AAT AAT A-AT -AAT
* * * * * *
3745665 AAT AAT AAC AAT AAT AAC AAT AAT -AT ATT TAT AAT AAT AAT AGT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
3745712 AAT AAT AAA AAT AACT AAT
1 AAT AAT AAT AAT AA-T AAT
3745731 TAATTTTAGT
Statistics
Matches: 210, Mismatches: 62, Indels: 36
0.68 0.20 0.12
Matches are distributed among these distances:
2 16 0.08
3 173 0.82
4 17 0.08
5 4 0.02
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:3745469 original size:41 final size:43
Alignment explanation
Indices: 3745399--3745493 Score: 133
Period size: 41 Copynumber: 2.3 Consensus size: 43
3745389 AAGAAAAAGT
*
3745399 GATAATAATAAAAACAAAAATAGTAATAATAGTATGTGA-AATA
1 GATAATAATAAAAACAAAAATAGTAATAATAATAT-TGATAATA
* *
3745442 -ATAATAGTAAAAA-AATAATAGTAATAATAATATTGATAATA
1 GATAATAATAAAAACAAAAATAGTAATAATAATATTGATAATA
3745483 GATAATAATAA
1 GATAATAATAA
3745494 TACTACTAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
40 3 0.07
41 22 0.48
42 21 0.46
ACGTcount: A:0.61, C:0.01, G:0.09, T:0.28
Consensus pattern (43 bp):
GATAATAATAAAAACAAAAATAGTAATAATAATATTGATAATA
Found at i:3745556 original size:20 final size:19
Alignment explanation
Indices: 3745500--3745556 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
3745490 ATAATACTAC
3745500 TAATAATAGTAGTAAAAAAA
1 TAATAATAGTA-TAAAAAAA
*
3745520 TAAAAATA-TATAGAAAACAA
1 TAATAATAGTATA-AAAA-AA
*
3745540 TAATAATAGTACAAAAA
1 TAATAATAGTATAAAAA
3745557 TGACAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 2 0.06
19 6 0.19
20 20 0.65
21 3 0.10
ACGTcount: A:0.67, C:0.04, G:0.07, T:0.23
Consensus pattern (19 bp):
TAATAATAGTATAAAAAAA
Found at i:3746204 original size:27 final size:29
Alignment explanation
Indices: 3746143--3746206 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 29
3746133 ATAAATCAGA
3746143 TTTTTTTTTTTAAAACTTCATTCTTTCT-
1 TTTTTTTTTTTAAAACTTCATTCTTTCTC
*
3746171 TTGTTTTTTTTTTAAA-TTC-TTCTTTCTC
1 TT-TTTTTTTTTAAAACTTCATTCTTTCTC
*
3746199 CTTTTTTT
1 TTTTTTTT
3746207 CTCTGCAGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 14 0.44
28 6 0.19
29 12 0.38
ACGTcount: A:0.12, C:0.14, G:0.02, T:0.72
Consensus pattern (29 bp):
TTTTTTTTTTTAAAACTTCATTCTTTCTC
Found at i:3750368 original size:21 final size:18
Alignment explanation
Indices: 3750333--3750375 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 18
3750323 ACATATTAAT
3750333 TATTTTAAATATTTTTCATA
1 TATTTTAAATA-TTTT-ATA
3750353 TATTTTAAACTATTTTATA
1 TATTTTAAA-TATTTTATA
3750372 TATT
1 TATT
3750376 ATCTATTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.32
20 13 0.59
21 2 0.09
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTTAAATATTTTATA
Found at i:3750402 original size:25 final size:25
Alignment explanation
Indices: 3750365--3750448 Score: 87
Period size: 26 Copynumber: 3.2 Consensus size: 25
3750355 TTTTAAACTA
*
3750365 TTTTATATATTATCTATTTTAATTT
1 TTTTATATGTTATCTATTTTAATTT
* * *
3750390 TTTTATATGTTATTTAGTTTATATTG
1 TTTTATATGTTATCTATTTTA-ATTT
* *
3750416 TTTTATATGTTAACTGTTTTAAATTCT
1 TTTTATATGTTATCTATTTT-AATT-T
3750443 TTTTAT
1 TTTTAT
3750449 TATTCATTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
25 18 0.38
26 22 0.47
27 7 0.15
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.65
Consensus pattern (25 bp):
TTTTATATGTTATCTATTTTAATTT
Found at i:3750423 original size:26 final size:25
Alignment explanation
Indices: 3750365--3750427 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
3750355 TTTTAAACTA
* * *
3750365 TTTTATATATTATCTATTTTAATTT
1 TTTTATATGTTATCTAGTTTAATTG
*
3750390 TTTTATATGTTATTTAGTTTATATTG
1 TTTTATATGTTATCTAGTTTA-ATTG
3750416 TTTTATATGTTA
1 TTTTATATGTTA
3750428 ACTGTTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
25 18 0.55
26 15 0.45
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (25 bp):
TTTTATATGTTATCTAGTTTAATTG
Found at i:3750783 original size:24 final size:24
Alignment explanation
Indices: 3750649--3750793 Score: 95
Period size: 24 Copynumber: 6.0 Consensus size: 24
3750639 ATATTATTTT
* * *
3750649 ATTGTTTTGTATATTAATGATTTTAA
1 ATTG-TTT-TATATTATTTATTTCAA
* **
3750675 ATTGTTTTATACTATTTCCTTCAA
1 ATTGTTTTATATTATTTATTTCAA
*
3750699 ATTGCTTTT-TATGGTATCTATTT-AA
1 ATTG-TTTTATAT--TATTTATTTCAA
3750724 ACCTT-TTTATATATTATTTATTT-AA
1 A--TTGTTT-TATATTATTTATTTCAA
* *
3750749 AAT-TTCT-TATTATTTATTTCAA
1 ATTGTTTTATATTATTTATTTCAA
3750771 ATTGTTTTATATTATTTATTTCA
1 ATTGTTTTATATTATTTATTTCA
3750794 TTTTTCTTTG
Statistics
Matches: 94, Mismatches: 15, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
21 12 0.13
22 5 0.05
23 6 0.06
24 31 0.33
25 24 0.26
26 11 0.12
27 5 0.05
ACGTcount: A:0.28, C:0.08, G:0.06, T:0.59
Consensus pattern (24 bp):
ATTGTTTTATATTATTTATTTCAA
Found at i:3752907 original size:14 final size:14
Alignment explanation
Indices: 3752888--3752939 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
3752878 AGTAATATAA
3752888 AATATAATAAAAAT
1 AATATAATAAAAAT
*
3752902 AATATAATGAATAAT
1 AATATAAT-AAAAAT
*
3752917 ATATATAGT-AAAAT
1 A-ATATAATAAAAAT
*
3752931 GATATAATA
1 AATATAATA
3752940 TATTATAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
13 6 0.20
14 12 0.40
15 6 0.20
16 6 0.20
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (14 bp):
AATATAATAAAAAT
Found at i:3752915 original size:48 final size:48
Alignment explanation
Indices: 3752850--3752956 Score: 114
Period size: 50 Copynumber: 2.2 Consensus size: 48
3752840 TGCAGATTTT
*
3752850 TAAAAT-TATACAT-AATAATA-A-ATACTAAAGTAATATAAAATATAA
1 TAAAATATATA-ATGAATAATATATATACTAAAATAATATAAAATATAA
* * * *
3752895 TAAAAATAATATAATGAATAATATATATAGTAAAATGATATAATATATTA
1 T-AAAAT-ATATAATGAATAATATATATACTAAAATAATATAAAATATAA
3752945 TAAAATATATAA
1 TAAAATATATAA
3752957 ATAAAACTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
45 1 0.02
46 5 0.10
47 2 0.04
48 17 0.33
49 6 0.12
50 20 0.39
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.34
Consensus pattern (48 bp):
TAAAATATATAATGAATAATATATATACTAAAATAATATAAAATATAA
Found at i:3752942 original size:20 final size:19
Alignment explanation
Indices: 3752912--3752956 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 19
3752902 AATATAATGA
3752912 ATAATATATATAGTAAAATGAT
1 ATAATATAT-TA-TAAAAT-AT
3752934 ATAATATATTATAAAATAT
1 ATAATATATTATAAAATAT
3752953 ATAA
1 ATAA
3752957 ATAAAACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.26
20 6 0.26
21 2 0.09
22 9 0.39
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (19 bp):
ATAATATATTATAAAATAT
Found at i:3752959 original size:20 final size:22
Alignment explanation
Indices: 3752889--3752956 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 22
3752879 GTAATATAAA
* * * *
3752889 ATATAATAAAAATAATATAATG
1 ATATAATATATATAGTAAAATG
3752911 A-ATAATATATATAGTAAAATG
1 ATATAATATATATAGTAAAATG
3752932 ATATAATATAT-TA-TAAAAT-
1 ATATAATATATATAGTAAAATG
3752951 ATATAA
1 ATATAA
3752957 ATAAAACTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 6 0.15
20 6 0.15
21 19 0.46
22 10 0.24
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (22 bp):
ATATAATATATATAGTAAAATG
Found at i:3753029 original size:20 final size:19
Alignment explanation
Indices: 3753006--3753048 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
3752996 GTAAAAATAA
3753006 TATATATATA-ATAAATCATT
1 TATATATATACAT-AAT-ATT
3753026 TATATATATACATAATATT
1 TATATATATACATAATATT
3753045 TATA
1 TATA
3753049 GTAAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.32
20 13 0.59
21 2 0.09
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
TATATATATACATAATATT
Found at i:3757108 original size:2 final size:2
Alignment explanation
Indices: 3757101--3757129 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
3757091 ATTTAAAAAC
3757101 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3757130 ATAATTAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3757388 original size:10 final size:12
Alignment explanation
Indices: 3757359--3757401 Score: 59
Period size: 12 Copynumber: 3.4 Consensus size: 12
3757349 GCACATATAT
3757359 ATATATATATATAA
1 ATATATA-ATA-AA
*
3757373 ATATATAATGAA
1 ATATATAATAAA
3757385 ATATATAATAAA
1 ATATATAATAAA
3757397 ATATA
1 ATATA
3757402 ATTTATAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 18 0.67
13 2 0.07
14 7 0.26
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (12 bp):
ATATATAATAAA
Found at i:3757401 original size:30 final size:30
Alignment explanation
Indices: 3757353--3757462 Score: 86
Period size: 30 Copynumber: 3.7 Consensus size: 30
3757343 TTATATGCAC
* *
3757353 ATATATATATATATATATAAATATATA-ATGAA
1 ATATATA-ATA-AAATAT-AATATATAGATAAA
*
3757385 ATATATAATAAAATATAATTTATAGATAAA
1 ATATATAATAAAATATAATATATAGATAAA
* * *
3757415 ATATACAAT--AATATAATATAATGGAT-AT
1 ATATATAATAAAATATAATAT-ATAGATAAA
3757443 ATATATAAATAAAA-ATAATA
1 ATATAT-AATAAAATATAATA
3757463 GCTAATATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
28 15 0.23
29 15 0.23
30 23 0.35
31 5 0.08
32 7 0.11
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (30 bp):
ATATATAATAAAATATAATATATAGATAAA
Found at i:3757402 original size:10 final size:11
Alignment explanation
Indices: 3757353--3757453 Score: 68
Period size: 10 Copynumber: 9.3 Consensus size: 11
3757343 TTATATGCAC
*
3757353 ATATAT-ATAT
1 ATATATAATAA
3757363 ATATAT-ATAA
1 ATATATAATAA
3757373 ATATATAATGAA
1 ATATATAAT-AA
3757385 ATATATAATAA
1 ATATATAATAA
**
3757396 A-ATATAATTT
1 ATATATAATAA
*
3757406 ATAGAT-A-AA
1 ATATATAATAA
*
3757415 ATATACAATAA
1 ATATATAATAA
**
3757426 TATAATATAATGG
1 -AT-ATATAATAA
3757439 ATATATATATAA
1 ATATATA-ATAA
3757451 ATA
1 ATA
3757454 AAAATAATAG
Statistics
Matches: 70, Mismatches: 13, Indels: 14
0.72 0.13 0.14
Matches are distributed among these distances:
9 4 0.06
10 25 0.36
11 15 0.21
12 20 0.29
13 6 0.09
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (11 bp):
ATATATAATAA
Found at i:3757570 original size:73 final size:73
Alignment explanation
Indices: 3757487--3757632 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
3757477 AAATAAATAA
3757487 TATAAAAAGTATTTAAAATAAATTAAAAAAATAAAAAAGGGATTAAAATTGAATTTAATTAAAGA
1 TATAAAAAGTATTTAAAATAAATTAAAAAAATAAAAAAGGGATTAAAATTGAATTTAATTAAAGA
3757552 ATTTGGGG
66 ATTTGGGG
3757560 TATAAAAAGTATTTAAAATAAATTAAAAAAATAAAAAAGGGATTAAAATTGAATTTAATTAAAGA
1 TATAAAAAGTATTTAAAATAAATTAAAAAAATAAAAAAGGGATTAAAATTGAATTTAATTAAAGA
3757625 ATTTGGGG
66 ATTTGGGG
3757633 CTAAATGTCA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.30
Consensus pattern (73 bp):
TATAAAAAGTATTTAAAATAAATTAAAAAAATAAAAAAGGGATTAAAATTGAATTTAATTAAAGA
ATTTGGGG
Found at i:3759896 original size:26 final size:26
Alignment explanation
Indices: 3759860--3760046 Score: 311
Period size: 26 Copynumber: 7.2 Consensus size: 26
3759850 TGATATAAAT
*
3759860 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
3759886 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
3759912 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
3759938 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
3759964 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
3759990 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
3760016 TAATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
3760042 TGATA
1 TGATA
3760047 GGAATTTCAT
Statistics
Matches: 153, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 153 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:3759950 original size:78 final size:78
Alignment explanation
Indices: 3759860--3760046 Score: 347
Period size: 78 Copynumber: 2.4 Consensus size: 78
3759850 TGATATAAAT
*
3759860 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
3759925 GGTAAATGTTTCA
66 GGTAAATGTTTCA
3759938 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
3760003 GGTAAATGTTTCA
66 GGTAAATGTTTCA
* *
3760016 TAATAATGGGTTAGGTAAATGTTTCATGATA
1 TGATAATAGGTTAGGTAAATGTTTCATGATA
3760047 GGAATTTCAT
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 106 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (78 bp):
TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
GGTAAATGTTTCA
Found at i:3762070 original size:137 final size:137
Alignment explanation
Indices: 3761824--3762110 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
3761814 GAGTAGTCTC
3761824 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
3761889 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
3761954 ACTGTTA
131 ACTGTTA
3761961 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
3762026 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
3762091 ACTGTTA
131 ACTGTTA
**
3762098 CCTGAATGGGCTT
1 CCCAAATGGGCTT
3762111 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Done.