Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 139 of 433
Found at i:42793556 original size:11 final size:11
Alignment explanation
Indices: 42793530--42793566 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
42793520 CACCGATCTG
42793530 CCCTTTCCCTTT
1 CCCTTTCCC-TT
42793542 CCCTTTCCCTT
1 CCCTTTCCCTT
*
42793553 CCCTTCCCCTT
1 CCCTTTCCCTT
42793564 CCC
1 CCC
42793567 CCATCCTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (11 bp):
CCCTTTCCCTT
Found at i:42793567 original size:6 final size:6
Alignment explanation
Indices: 42793530--42793563 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
42793520 CACCGATCTG
*
42793530 CCCTTT CCCTTT CCCTTT CCC-TT CCCTTC CCCTT
1 CCCTTT CCCTTT CCCTTT CCCTTT CCCTTT CCCTT
42793564 CCCCCATCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (6 bp):
CCCTTT
Found at i:42795088 original size:29 final size:30
Alignment explanation
Indices: 42795065--42795123 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
42795055 TATTATTGTT
*
42795065 ATTATTTTATTATATTAT-AAATTAAATTA
1 ATTATATTATTATATTATGAAATTAAATTA
42795094 ATTATATTATTATATTATGAAA-TAAATTA
1 ATTATATTATTATATTATGAAATTAAATTA
42795123 A
1 A
42795124 GAAAAGACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 25 0.89
30 3 0.11
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (30 bp):
ATTATATTATTATATTATGAAATTAAATTA
Found at i:42795227 original size:33 final size:34
Alignment explanation
Indices: 42795178--42795243 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 34
42795168 TTAAATGAGT
42795178 ATATTTGTATTATTTA-TATATAATTAGTAAAAAG
1 ATATTTGTATTATTTATTAT-TAATTAGTAAAAAG
42795212 ATATTT-TATTATTTATTATTAATTAGTAAAAA
1 ATATTTGTATTATTTATTATTAATTAGTAAAAA
42795244 TTTTTATATG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
33 22 0.71
34 9 0.29
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (34 bp):
ATATTTGTATTATTTATTATTAATTAGTAAAAAG
Found at i:42795533 original size:21 final size:20
Alignment explanation
Indices: 42795496--42795537 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
42795486 ATTTATTTAC
42795496 TTATTATTTAAGAAATAATAA
1 TTATTATTTAAGAAAT-ATAA
*
42795517 TTATTA-TTAAGTTAATATAA
1 TTATTATTTAAG-AAATATAA
42795537 T
1 T
42795538 AATATAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (20 bp):
TTATTATTTAAGAAATATAA
Found at i:42795581 original size:21 final size:21
Alignment explanation
Indices: 42795557--42795599 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
42795547 AACTAAAGTA
*
42795557 AAAATAAAAGATAAAACAAAC
1 AAAATAAAACATAAAACAAAC
*
42795578 AAAATAAAACATAAAAGAAAC
1 AAAATAAAACATAAAACAAAC
42795599 A
1 A
42795600 GAACCATTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.77, C:0.09, G:0.05, T:0.09
Consensus pattern (21 bp):
AAAATAAAACATAAAACAAAC
Found at i:42795672 original size:7 final size:7
Alignment explanation
Indices: 42795660--42795686 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
42795650 AATAGGGAAT
42795660 TTGGAGC
1 TTGGAGC
42795667 TTGGAGC
1 TTGGAGC
42795674 TTGGAGC
1 TTGGAGC
42795681 TTGGAG
1 TTGGAG
42795687 TTTAATTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.11, G:0.44, T:0.30
Consensus pattern (7 bp):
TTGGAGC
Found at i:42800954 original size:20 final size:19
Alignment explanation
Indices: 42800917--42800955 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
42800907 CTATAGCAAC
42800917 TCACAATTTCAATTATTTT
1 TCACAATTTCAATTATTTT
42800936 TCAC-ATTTACAACTTATTTT
1 TCACAATTT-CAA-TTATTTT
42800956 ACAACTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 7 0.39
20 7 0.39
ACGTcount: A:0.31, C:0.18, G:0.00, T:0.51
Consensus pattern (19 bp):
TCACAATTTCAATTATTTT
Found at i:42802731 original size:14 final size:14
Alignment explanation
Indices: 42802712--42802750 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
42802702 AAAAGTAAAT
42802712 TATTTTCTGGAAAA
1 TATTTTCTGGAAAA
*
42802726 TATTTTCTGAAAAA
1 TATTTTCTGGAAAA
42802740 TATTTTACTGG
1 TATTTT-CTGG
42802751 CAAACAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 19 0.86
15 3 0.14
ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46
Consensus pattern (14 bp):
TATTTTCTGGAAAA
Found at i:42802808 original size:24 final size:25
Alignment explanation
Indices: 42802776--42802835 Score: 68
Period size: 29 Copynumber: 2.3 Consensus size: 25
42802766 TAATTTATAT
*
42802776 TTTATATATC-ATTATATTAAATTA
1 TTTAAATATCTATTATATTAAATTA
42802800 TTTAAATATCATGTTATTATATTAAATTA
1 TTTAAATATC----TATTATATTAAATTA
42802829 TTTAAAT
1 TTTAAAT
42802836 CTTATTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 9 0.30
29 21 0.70
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (25 bp):
TTTAAATATCTATTATATTAAATTA
Found at i:42806040 original size:37 final size:38
Alignment explanation
Indices: 42805940--42806041 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 38
42805930 ATATATTTGG
42805940 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA
1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA
* *
42805976 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA
1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA
*
42806018 TAATAATAATATCTACAATAAAAG
1 TAATAATAATATCTAAAATAAAAG
42806042 AAAATATTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 7 0.13
40 3 0.05
41 3 0.05
42 10 0.18
43 13 0.24
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (38 bp):
TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA
Found at i:42806873 original size:13 final size:15
Alignment explanation
Indices: 42806839--42806873 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
42806829 TTCTTCTTTT
42806839 TTTTTTTGGGTTAGG
1 TTTTTTTGGGTTAGG
42806854 TTTTTTT-GG-TAGG
1 TTTTTTTGGGTTAGG
42806867 TTTTTTT
1 TTTTTTT
42806874 TCTTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 11 0.55
14 2 0.10
15 7 0.35
ACGTcount: A:0.06, C:0.00, G:0.26, T:0.69
Consensus pattern (15 bp):
TTTTTTTGGGTTAGG
Found at i:42806881 original size:11 final size:11
Alignment explanation
Indices: 42806867--42806897 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
42806857 TTTTGGTAGG
42806867 TTTTTTTTCTT
1 TTTTTTTTCTT
42806878 TTTTTTTTCTT
1 TTTTTTTTCTT
42806889 TGTTTTTTT
1 T-TTTTTTT
42806898 TTTGGGTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.90
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:42806885 original size:15 final size:15
Alignment explanation
Indices: 42806867--42806900 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
42806857 TTTTGGTAGG
42806867 TTTTT-TTTCTTTTT
1 TTTTTCTTTCTTTTT
*
42806881 TTTTTCTTTGTTTTT
1 TTTTTCTTTCTTTTT
42806896 TTTTT
1 TTTTT
42806901 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (15 bp):
TTTTTCTTTCTTTTT
Found at i:42806905 original size:55 final size:55
Alignment explanation
Indices: 42806819--42806972 Score: 235
Period size: 55 Copynumber: 2.8 Consensus size: 55
42806809 TTTTGTTAGG
*
42806819 TTTTTCTTTTTTCTTCT-TTTTTTTTTTGGGTTAGGTTTTTTTGGTAGGTTTTT-T
1 TTTTTTTTTTTTCTT-TGTTTTTTTTTTGGGTTAGGTTTTTTTGGTAGGTTTTTCT
42806873 TTCTTTTTTTTTTCTTTGTTTTTTTTTTGGGTTAGGTTTTTTTTGGTAGGTTTTTCT
1 TT-TTTTTTTTTTCTTTGTTTTTTTTTTGGGTTAGG-TTTTTTTGGTAGGTTTTTCT
42806930 TTTTCTTTTTTTTCTTTG--TTTTTTTTGGGTTAGGTTTTTTTGG
1 TTTT-TTTTTTTTCTTTGTTTTTTTTTTGGGTTAGGTTTTTTTGG
42806973 GGGGCTTAAT
Statistics
Matches: 94, Mismatches: 1, Indels: 10
0.90 0.01 0.10
Matches are distributed among these distances:
54 12 0.13
55 46 0.49
56 20 0.21
57 16 0.17
ACGTcount: A:0.03, C:0.05, G:0.18, T:0.74
Consensus pattern (55 bp):
TTTTTTTTTTTTCTTTGTTTTTTTTTTGGGTTAGGTTTTTTTGGTAGGTTTTTCT
Found at i:42806912 original size:16 final size:14
Alignment explanation
Indices: 42806893--42806927 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
42806883 TTTCTTTGTT
42806893 TTTTTTTTGGGTTAGG
1 TTTTTTTT-GG-TAGG
42806909 TTTTTTTTGGTAGG
1 TTTTTTTTGGTAGG
42806923 TTTTT
1 TTTTT
42806928 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 2 0.11
16 8 0.42
ACGTcount: A:0.06, C:0.00, G:0.26, T:0.69
Consensus pattern (14 bp):
TTTTTTTTGGTAGG
Found at i:42806932 original size:16 final size:17
Alignment explanation
Indices: 42806892--42806932 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
42806882 TTTTCTTTGT
42806892 TTTTTTTTTGGGTTAGG
1 TTTTTTTTTGGGTTAGG
42806909 -TTTTTTTT-GG-TAGG
1 TTTTTTTTTGGGTTAGG
42806923 TTTTTCTTTT
1 TTTTT-TTTT
42806933 TCTTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.18
15 6 0.27
16 12 0.55
ACGTcount: A:0.05, C:0.02, G:0.22, T:0.71
Consensus pattern (17 bp):
TTTTTTTTTGGGTTAGG
Found at i:42806941 original size:15 final size:15
Alignment explanation
Indices: 42806923--42806955 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
42806913 TTTTGGTAGG
42806923 TTTTTCTTT-TTCTTT
1 TTTTTCTTTGTT-TTT
42806938 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
42806953 TTT
1 TTT
42806956 GGGTTAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:42808146 original size:77 final size:80
Alignment explanation
Indices: 42807975--42808351 Score: 328
Period size: 79 Copynumber: 4.7 Consensus size: 80
42807965 ATGTGACCCG
* * * *
42807975 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATGCCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAAATGCCT
* * *
42808040 CAGTGTGTGATCTGA
66 CAGTGCGTGAACTCA
*
42808055 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATA-G-CT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAAATGCCT
42808117 CAGTGCGTGAAC-CA
66 CAGTGCGTGAACTCA
* **
42808131 AGGCTCAACTTACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGGCAGAAATTGAAAAACGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTG--AAA--AAA-
* * * *
42808195 TGAAAATACCTCAGCGTGTGACCT-G
61 TG------CCTCAGTGCGTGAACTCA
* * * * * * *
42808220 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGACA-ACAGAAATTG--AAATTACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAAATGCCT
** *
42808282 CA--GCGTGTCCT-G
66 CAGTGCGTGAACTCA
* *
42808294 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAA
42808352 TACCTCAGCA
Statistics
Matches: 248, Mismatches: 30, Indels: 41
0.78 0.09 0.13
Matches are distributed among these distances:
74 47 0.19
75 10 0.04
76 26 0.10
77 43 0.17
78 4 0.02
79 53 0.21
80 3 0.01
82 2 0.01
83 2 0.01
85 1 0.00
89 48 0.19
90 9 0.04
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (80 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAAAATGCCT
CAGTGCGTGAACTCA
Found at i:42808228 original size:166 final size:164
Alignment explanation
Indices: 42808031--42808351 Score: 448
Period size: 166 Copynumber: 1.9 Consensus size: 164
42808021 ATAAATTGAA
* * * * *
42808031 AAAATGCCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
* * *
42808096 AGATAGAAATTGAAAATAGCTCAGTGCGTGAACC-AAGGCTCAACTTACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCGTG-ACCTAAGGCTCAACTCACCTCTCGCAATATGAGT
**
42808160 TGA-TTTTTTGAAAGGCAGAAATTGAAAAACGAAATTG
127 TGATTTTTTTGAAAAACAGAAATTGAAAAACGAAATTG
* * *
42808197 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
* * *
42808262 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
42808327 TTTTTTGAAAAACAGAAATTGAAAA
131 TTTTTTGAAAAACAGAAATTGAAAA
42808352 TACCTCAGCA
Statistics
Matches: 137, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
162 2 0.01
163 36 0.26
164 23 0.17
165 18 0.13
166 58 0.42
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (164 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAAATACCTCAGCGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGAAAAACAGAAATTGAAAAACGAAATTG
Found at i:42808252 original size:89 final size:89
Alignment explanation
Indices: 42808101--42808275 Score: 230
Period size: 89 Copynumber: 2.0 Consensus size: 89
42808091 TTGAAAGATA
* * * * *
42808101 GAAATTGAAAATAGCTCAGTGCGTGAACCAAGGCTCAACTTACCTCTCGCAATATGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGCGTGAACCAAGGCTCAACTCACCTCTCACAATACGAGTTGATTT
42808165 TTTTGA-AAGGCAGAAATTGAAAAAC
66 TTTTGACAA--CAGAAATTGAAAAAC
* * *
42808190 GAAATTGAAAATACCTCAGCGTGTG-ACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATT
1 GAAATTGAAAATACCTCAGCGCGTGAACC-AAGGCTCAACTCACCTCTCACAATACGAGTTGATT
42808254 TTTTTGACAACAGAAATTGAAA
65 TTTTTGACAACAGAAATTGAAA
42808276 TTACCTCAGC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
88 3 0.04
89 62 0.83
90 8 0.11
91 2 0.03
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (89 bp):
GAAATTGAAAATACCTCAGCGCGTGAACCAAGGCTCAACTCACCTCTCACAATACGAGTTGATTT
TTTTGACAACAGAAATTGAAAAAC
Found at i:42808375 original size:75 final size:74
Alignment explanation
Indices: 42808185--42808452 Score: 371
Period size: 75 Copynumber: 3.6 Consensus size: 74
42808175 CAGAAATTGA
* * *
42808185 AAAAC-GAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
42808249 TGATTTTTTTG
64 TGATTTTTTTG
* *
42808260 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
42808325 ATTTTTTTG
66 ATTTTTTTG
* * * **
42808334 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
42808399 GA--ATTTTG
65 GATTTTTTTG
* *
42808407 AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
42808453 TTTTGAACAG
Statistics
Matches: 175, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
72 43 0.25
73 5 0.03
74 41 0.23
75 63 0.36
76 23 0.13
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29
Consensus pattern (74 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTG
Found at i:42808475 original size:49 final size:49
Alignment explanation
Indices: 42808409--42808504 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
42808399 GAATTTTGAA
* *
42808409 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTAAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
42808458 AACAGAAATTAAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTAAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
42808505 CTCGCAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (49 bp):
AACAGAAATTAAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:42808490 original size:121 final size:121
Alignment explanation
Indices: 42808337--42808576 Score: 392
Period size: 121 Copynumber: 2.0 Consensus size: 121
42808327 TTTTTTGAAA
*
42808337 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
* *
42808402 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* *
42808458 AACAGAAATT-AAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AACAGAAATTGAAAA-TACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGA
* * *
42808522 ATTTTGAAAATAGAAATTGAAACTACCTCAACGTGTCTTGATGCTCAACTTATTT
65 ATTTTGAAAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTT
42808577 CTCGCAATAT
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
120 4 0.04
121 106 0.96
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:42808568 original size:72 final size:72
Alignment explanation
Indices: 42808461--42808695 Score: 271
Period size: 72 Copynumber: 3.2 Consensus size: 72
42808451 CATTTTGAAC
42808461 AGAAATT-AAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 AGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
42808525 TTGAAAAT
65 TTGAAAAT
* * *
42808533 AGAAATTGAAACTACCTCAACGTGTCTTGATGCTCAACTTATTTCTCGCAATATGAGTTGAATTT
1 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA---
42808598 TTTTTGAAAGAT
63 -TTTTGAAA-AT
* * * * *
42808610 AGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACTTCTCGCAATATGAGCTG-A
1 AGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
42808673 TTTTGAAAAAGT
63 TTTTG-AAAA-T
42808685 AGAAATT-AAAA
1 AGAAATTGAAAA
42808696 GGTTCAACCC
Statistics
Matches: 141, Mismatches: 11, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
72 55 0.39
73 3 0.02
74 10 0.07
75 11 0.08
76 8 0.06
77 20 0.14
78 1 0.01
79 32 0.23
80 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (72 bp):
AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT
TGAAAAT
Found at i:42808745 original size:54 final size:54
Alignment explanation
Indices: 42808645--42808750 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
42808635 GAACCGAGGC
* *
42808645 TCAACTCACTTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
42808699 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
42808751 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:42808811 original size:140 final size:140
Alignment explanation
Indices: 42808601--42809091 Score: 862
Period size: 140 Copynumber: 3.5 Consensus size: 140
42808591 TGAATTTTTT
* *
42808601 TTGAAAGATAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACTTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
42808665 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
42808730 TTGAACAACGTAAA
127 TTGAACAACGTAAA
42808744 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
42808809 CTGATTTTGAAAAAAGTAGAAATTAAAAGGTTCAACCCA-CTTTCGCAATATGAGTTGATTCTTG
66 CTGATTTTG-AAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
42808873 AACAACGTAAA
130 AACAACGTAAA
42808884 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
42808949 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
42809014 ACAACGTAAA
131 ACAACGTAAA
* *
42809024 TTGAAAACAGAAATTGAAAATACC-CAGTGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
42809088 CTGA
66 CTGA
42809092 AATTAAAACA
Statistics
Matches: 338, Mismatches: 7, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
139 74 0.22
140 207 0.61
141 29 0.09
142 22 0.07
143 6 0.02
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:42809025 original size:54 final size:54
Alignment explanation
Indices: 42808925--42809030 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
42808915 GACCTGAGGC
*
42808925 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
42808979 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
42809031 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:42809153 original size:71 final size:70
Alignment explanation
Indices: 42809021--42809184 Score: 206
Period size: 71 Copynumber: 2.3 Consensus size: 70
42809011 TGAACAACGT
* * ** *
42809021 AAATTGAAAACAGAAATTGAAAATACCCAGTGTGACTTGAGGCTCAACTCACCTCTCGCAATATG
1 AAATTGAAAACAAAAATTGAAAATACCCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATG
42809086 AGCTG
66 AGCTG
*
42809091 AAATT-AAAACACAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTGAAAACA-AAAATTGAAAATACC-CAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
*
42809155 TGAGTTG
64 TGAGCTG
**
42809162 ATTTTGAAAAACAAAAATT-AAAA
1 AAATTG-AAAACAAAAATTGAAAA
42809185 GGCTTAACTC
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
69 6 0.07
70 19 0.23
71 44 0.54
72 6 0.07
73 6 0.07
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (70 bp):
AAATTGAAAACAAAAATTGAAAATACCCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATG
AGCTG
Found at i:42809279 original size:122 final size:124
Alignment explanation
Indices: 42809060--42809287 Score: 370
Period size: 122 Copynumber: 1.9 Consensus size: 124
42809050 GTGTGACTTG
* * *
42809060 AGGCTCAACTCACCTCTCGCAATATGAGCTGAAATTAAAACACAAAATTGAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTCAAATTAAAACACAAAACTAAAAATACCTCAGCGT
42809125 GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* * *
42809184 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACA-TAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTCAAATTAAAACACAAAACTAAAAATACCTCAGCGT
* *
42809247 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
66 GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
42809288 AAAACTAAAA
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
122 58 0.60
123 11 0.11
124 27 0.28
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTCAAATTAAAACACAAAACTAAAAATACCTCAGCGT
GCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:42809409 original size:71 final size:72
Alignment explanation
Indices: 42809293--42809592 Score: 381
Period size: 71 Copynumber: 4.1 Consensus size: 72
42809283 GATTTAAAAC
*
42809293 TAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTGAAAA
1 TAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
42809357 CA-ACAAT
66 CAGA-AAT
* ** *
42809364 TAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAGTTTTTTTGA
1 TAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTG-
*
42809429 AAAACAGAAGT
62 AAAACAGAAAT
* * *
42809440 TGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAA
1 TAAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
42809505 AACAGAAAT
64 AACAGAAAT
* * *
42809514 TGAAATTACCTCAGCGTGT-CCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 TAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-A
42809578 AAACAGAAAT
63 AAACAGAAAT
42809588 TAAAA
1 TAAAA
42809593 GGCTTAACTC
Statistics
Matches: 199, Mismatches: 19, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
71 83 0.42
73 6 0.03
74 42 0.21
75 11 0.06
76 24 0.12
77 1 0.01
78 32 0.16
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (72 bp):
TAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
CAGAAAT
Found at i:42809432 original size:134 final size:134
Alignment explanation
Indices: 42809184--42809580 Score: 403
Period size: 149 Copynumber: 2.9 Consensus size: 134
42809174 AAAAATTAAA
* * * * *
42809184 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTAAAAATACCTCAGCGT
* ***
42809247 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTAAAACT-AAAAA-T-ACCTCAGCG
66 G-TCCGAGGCTCAACTCAC-TCTCGCAATATGAGTTGATTT--TTTTGAAAAAGTAACCTCAGCG
42809309 TGT-CCCG
127 TGTACCCG
* *
42809316 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACA-ACAATTAAAAATACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGA-AATTAAAAATACCTCAGCG
*
42809380 TGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAGTTTTTTTGAAAAACAGAAGTTGAAA
65 TGTC-CGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA-TTTTTTTG---AA-A-AAG-T----
42809445 ACACCTCAGCGTGTGACCCG
117 A-ACCTCAGCGTGT-ACCCG
* * *
42809465 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAACAGAAATTAAAAATACCTCAGCG
*
42809530 TGTCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
65 TGTCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTTTGAAAAA
42809581 CAGAAATTAA
Statistics
Matches: 222, Mismatches: 19, Indels: 37
0.80 0.07 0.13
Matches are distributed among these distances:
132 26 0.12
133 8 0.04
134 56 0.25
135 4 0.02
137 2 0.01
138 1 0.00
139 2 0.01
141 1 0.00
143 2 0.01
144 1 0.00
145 2 0.01
147 12 0.05
148 8 0.04
149 65 0.29
150 31 0.14
151 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (134 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTAAAAATACCTCAGCGT
GTCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTTTTGAAAAAGTAACCTCAGCGTGTA
CCCG
Found at i:42810025 original size:72 final size:73
Alignment explanation
Indices: 42809789--42810053 Score: 372
Period size: 75 Copynumber: 3.6 Consensus size: 73
42809779 AAGGTTCTCC
* * * *
42809789 CACCTCTCGCAATGTGAGTTGA-TTCTTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGA
1 CACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCCGA
42809853 GGCTCAACT
65 GGCTCAACT
* * **
42809862 CACCTCTTGCAATATGAGTTGATTTTTTTGAAAGACAGAAGTTGAAAACACCTCAGCGTGTGACC
1 CACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAATTACCTCAGCGTGT--CC
42809927 CGAGGCTCAACT
62 CGAGGCTCAACT
*
42809939 CACCTCTCGTAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
1 CACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
42810003 GCTCAACT
66 GCTCAACT
42810011 CACCTCTCGCAATATGAGTTGATTTTTTTGAATAACAGAAATT
1 CACCTCTCGCAATATGAGTTGA-TTTTTTGAA-AACAGAAATT
42810054 AAAAGGCTTA
Statistics
Matches: 170, Mismatches: 14, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
72 35 0.21
73 20 0.12
74 34 0.20
75 48 0.28
77 33 0.19
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (73 bp):
CACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
GCTCAACT
Found at i:42810224 original size:71 final size:71
Alignment explanation
Indices: 42810119--42810463 Score: 251
Period size: 76 Copynumber: 4.8 Consensus size: 71
42810109 AACTTGCCCC
*
42810119 GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAGCG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAGCG
42810184 TGTCCT
66 TGTCCT
* * * *
42810190 GAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAA-CAGAAATTGAAA--TT--ACC
* *
42810255 -CA-CCTCTCGC-
60 TCAGCGTGTC-CT
* * * ** * * * * ** *
42810265 AATG-TGAGTTGA-TTCTTGACAA-A-CA---GAAATTGAAAAACAGAAATTGAAAATACCTCAG
1 GAGGCTCAACTCACCTCTCG-CAATATGAGTTGATTTTG-AAAACAGAAATTGAAATTACCTCA-
**
42810323 CGCGTGAGCT
63 -GCGTGTCCT
* *
42810333 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTATGAACAGAAATTGAAATTACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTGA-AAACAGAAATTGAAATTACCT
42810398 CAGCGTGTCCT
61 CAGCGTGTCCT
*
42810409 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA-AAACAGAAATTGAAA
42810464 AACAGAAATT
Statistics
Matches: 205, Mismatches: 44, Indels: 49
0.69 0.15 0.16
Matches are distributed among these distances:
64 3 0.01
65 2 0.01
66 1 0.00
67 1 0.00
68 14 0.07
69 17 0.08
70 5 0.02
71 36 0.18
72 25 0.12
73 14 0.07
74 9 0.04
75 8 0.04
76 43 0.21
77 4 0.02
78 23 0.11
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (71 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAATTACCTCAGCG
TGTCCT
Found at i:42810241 original size:465 final size:465
Alignment explanation
Indices: 42809320--42810463 Score: 1789
Period size: 465 Copynumber: 2.4 Consensus size: 465
42809310 GTCCCGAGGC
* * * * *
42809320 TCAACTCACTTCTCGCAATATGAGTTGATT-TTGA-AAACA-ACAATTAAAAATACCTCAACGTG
1 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGA-AATTGAAATTACCTCAACGTG
* * *
42809382 TCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAGTTTTTTTGAAAAACAGAAGTTGAAAAC
65 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAGTTGAAAAC
*
42809447 ACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAACAGAA
129 ACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAA
*
42809512 ATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGA
194 ATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
42809577 AAAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTCAATTTAAAACTAAAAGTACC
259 AAAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTCAATTTAAAACTAAAAGTACC
42809642 TCAACTTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAA
324 TCAACTTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAA
* *
42809707 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAG
389 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAG
42809772 AAATTAAAAGGT
454 AAATTAAAAGGT
* *
42809784 TC-TCCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAACGTGT
*
42809848 CCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAGACAGAAGTTGAAAACAC
66 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAGTTGAAAACAC
*
42809913 CTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAACAGAAAT
131 CTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAAT
42809978 TGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
196 TGAAATTACCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* *
42810043 TAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTTAATTTAAAACTAAAAGTACCT
260 AAACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTCAATTTAAAACTAAAAGTACCT
42810108 CAACTTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAA
325 CAACTTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAA
42810173 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGA
390 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGA
42810238 AATTAAAAGGT
455 AATTAAAAGGT
42810249 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAAAACAGAAATTGAAA
1 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATT--------GAAA-T----
* ** ** *
42810314 ATACCTCAGCGCGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTATGA
53 -TACCTCA--ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAG-
* ** *
42810379 ACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
114 ACAGAAGTTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
42810442 -TTTTGACGAACAGAAATTGAAA
179 TTTTTGA-AAACAGAAATTGAAA
42810464 AACAGAAATT
Statistics
Matches: 625, Mismatches: 32, Indels: 29
0.91 0.05 0.04
Matches are distributed among these distances:
463 23 0.04
464 116 0.19
465 305 0.49
466 44 0.07
474 4 0.01
475 1 0.00
480 13 0.02
481 48 0.08
482 47 0.08
483 24 0.04
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (465 bp):
TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAACGTGT
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAGTTGAAAACAC
CTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAAT
TGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
AACAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTCAATTTAAAACTAAAAGTACCTC
AACTTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAAT
TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGAAAAAGTAGAA
ATTAAAAGGT
Found at i:42810259 original size:54 final size:55
Alignment explanation
Indices: 42810195--42810300 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
42810185 GTCCTGAGGC
* *
42810195 TCAACTCACCTCTCACAATATGAGCTGATT-TTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCACAATATGAGCTGATTCTTGAAAAA-CAGAAATTGAAAAGGT
* * * *
42810249 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAAA
1 TCAACCCACCTCTCACAATATGAGCTGATTCTTGAAAAACAGAAATTGAAAA
42810301 ACAGAAATTG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 33 0.75
55 11 0.25
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (55 bp):
TCAACCCACCTCTCACAATATGAGCTGATTCTTGAAAAACAGAAATTGAAAAGGT
Found at i:42810302 original size:14 final size:14
Alignment explanation
Indices: 42810280--42810314 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
42810270 GAGTTGATTC
*
42810280 TTGACAAACAGAAA
1 TTGAAAAACAGAAA
42810294 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
42810308 TTGAAAA
1 TTGAAAA
42810315 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:42810467 original size:14 final size:14
Alignment explanation
Indices: 42810450--42810478 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
42810440 GATTTTGACG
42810450 AACAGAAATTGAAA
1 AACAGAAATTGAAA
42810464 AACAGAAATTGAAA
1 AACAGAAATTGAAA
42810478 A
1 A
42810479 TACCTCTGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:42810527 original size:164 final size:164
Alignment explanation
Indices: 42810249--42810609 Score: 632
Period size: 164 Copynumber: 2.2 Consensus size: 164
42810239 ATTAAAAGGT
* *
42810249 TCAACCCACCTCTCGCAATGTGAGTTGATTCTTGACAAACAGAAATTGAAAAACAGAAATTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGACAAACAGAAATTGAAAAACAGAAATTGAAA
*
42810314 ATACCTCAGCGCGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTATGA
65 ATACCTCAGCGCGTGAGCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTATGA
42810379 ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
130 ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
*
42810414 TCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAAAACAGAAATTGAAAA
*
42810479 TACCTCTGCGCGTGAGCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTATGAA
66 TACCTCAGCGCGTGAGCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTATGAA
42810544 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
131 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
* ** *
42810578 TCAACTCATCTCTCAAAATATGAGTTTATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT
42810610 CCTTGAAAAG
Statistics
Matches: 187, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
164 159 0.85
165 28 0.15
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (164 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAACAGAAATTGAAAAACAGAAATTGAAAA
TACCTCAGCGCGTGAGCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTATGAA
CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
Found at i:42810598 original size:76 final size:77
Alignment explanation
Indices: 42810464--42810609 Score: 195
Period size: 76 Copynumber: 1.9 Consensus size: 77
42810454 GAAATTGAAA
* * **
42810464 AACAGAAATTGAAAATACCTCTGCGCGTGAGCTGAGGCCCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAATTGAAAATACCTC-GAGCGTGACCTGAGGCCCAACTCACCTCTCAAAATATGAGTTG
42810529 ATTTTTTTTTATG
65 ATTTTTTTTTATG
* * * * *
42810542 AACAGAAATTGAAATTACCTC-AGCGTGTCCTGAGGCTCAACTCATCTCTCAAAATATGAGTTTA
1 AACAGAAATTGAAAATACCTCGAGCGTGACCTGAGGCCCAACTCACCTCTCAAAATATGAGTTGA
42810606 TTTT
66 TTTT
42810610 CCTTGAAAAG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
76 39 0.66
78 20 0.34
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (77 bp):
AACAGAAATTGAAAATACCTCGAGCGTGACCTGAGGCCCAACTCACCTCTCAAAATATGAGTTGA
TTTTTTTTTATG
Found at i:42815648 original size:12 final size:12
Alignment explanation
Indices: 42815628--42815663 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
42815618 TGGGATATGC
*
42815628 AATGTATGAATG
1 AATGCATGAATG
42815640 AATGCATGAATG
1 AATGCATGAATG
42815652 AATGCATGAATG
1 AATGCATGAATG
42815664 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:42817435 original size:37 final size:38
Alignment explanation
Indices: 42817335--42817436 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 38
42817325 ATATATTTGG
42817335 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA
1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA
* *
42817371 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA
1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA
*
42817413 TAATAATAATATCTACAATAAAAG
1 TAATAATAATATCTAAAATAAAAG
42817437 AAAATATTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 7 0.13
40 3 0.05
41 3 0.05
42 10 0.18
43 13 0.24
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (38 bp):
TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA
Found at i:42818277 original size:16 final size:16
Alignment explanation
Indices: 42818258--42818292 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
42818248 TTTTGGTAGG
42818258 TTTTTCTTT-TTCTTTT
1 TTTTTCTTTGTT-TTTT
42818274 TTTTTCTTTGTTTTTT
1 TTTTTCTTTGTTTTTT
42818290 TTT
1 TTT
42818293 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (16 bp):
TTTTTCTTTGTTTTTT
Found at i:42818290 original size:58 final size:56
Alignment explanation
Indices: 42818207--42818368 Score: 272
Period size: 58 Copynumber: 2.8 Consensus size: 56
42818197 TTTTGTTAGG
*
42818207 TTTTTCTTTTTTCTTCTTT-TTTTTTTTTGGGGTTAGGTTTTTTTTGGTAGGTTTTTC
1 TTTTTCTTTTTTTTTCTTTGTTTTTTTTT-GGGTTAGGTTTTTTTTGGTAGG-TTTTC
42818264 TTTTTCTTTTTTTTTCTTTGTTTTTTTTTGGGTTAGGTTTTTTTTTGGTAGGTTTTC
1 TTTTTCTTTTTTTTTCTTTGTTTTTTTTTGGGTTAGG-TTTTTTTTGGTAGGTTTTC
42818321 TTTTTCTTTTTTTTTTCTTTGTTTTTTTTTGGGTTAGGTTTTTTTTGG
1 TTTTTC-TTTTTTTTTCTTTGTTTTTTTTTGGGTTAGGTTTTTTTTGG
42818369 GGGGCTTAAT
Statistics
Matches: 101, Mismatches: 1, Indels: 6
0.94 0.01 0.06
Matches are distributed among these distances:
57 47 0.47
58 54 0.53
ACGTcount: A:0.03, C:0.06, G:0.17, T:0.74
Consensus pattern (56 bp):
TTTTTCTTTTTTTTTCTTTGTTTTTTTTTGGGTTAGGTTTTTTTTGGTAGGTTTTC
Found at i:42818304 original size:16 final size:16
Alignment explanation
Indices: 42818285--42818369 Score: 58
Period size: 16 Copynumber: 5.7 Consensus size: 16
42818275 TTTTCTTTGT
42818285 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
*
42818301 TTTTTTTTTGG-TAGG
1 TTTTTTTTGGGTTAGG
**
42818316 TTTTCTTTT-TCTT---
1 TTTT-TTTTGGGTTAGG
* * *
42818329 TTTTTTTT--CTTTGT
1 TTTTTTTTGGGTTAGG
42818343 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
42818359 TTTTTTTTGGG
1 TTTTTTTTGGG
42818370 GGGCTTAATG
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
11 3 0.05
12 4 0.07
13 4 0.07
14 8 0.14
15 8 0.14
16 29 0.52
ACGTcount: A:0.04, C:0.04, G:0.21, T:0.72
Consensus pattern (16 bp):
TTTTTTTTGGGTTAGG
Found at i:42818315 original size:15 final size:17
Alignment explanation
Indices: 42818283--42818325 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
42818273 TTTTTTCTTT
42818283 GTTTTTTTTTGGGTTAG
1 GTTTTTTTTTGGGTTAG
42818300 GTTTTTTTTT-GG-TAG
1 GTTTTTTTTTGGGTTAG
42818315 GTTTTCTTTTT
1 GTTTT-TTTTT
42818326 CTTTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.32
16 7 0.28
17 10 0.40
ACGTcount: A:0.05, C:0.02, G:0.23, T:0.70
Consensus pattern (17 bp):
GTTTTTTTTTGGGTTAG
Found at i:42818336 original size:17 final size:17
Alignment explanation
Indices: 42818316--42818350 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
42818306 TTTTGGTAGG
42818316 TTTTCTTT-TTCTTTTTT
1 TTTTCTTTGTT-TTTTTT
42818333 TTTTCTTTGTTTTTTTT
1 TTTTCTTTGTTTTTTTT
42818350 T
1 T
42818351 GGGTTAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTCTTTGTTTTTTTT
Found at i:42819997 original size:28 final size:29
Alignment explanation
Indices: 42819930--42820030 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
42819920 ATAGTGAATC
*
42819930 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
42819959 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
42819987 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
42820017 CGCACACTTAGTGC
1 CGCACACTTAGTGC
42820031 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:42825590 original size:28 final size:29
Alignment explanation
Indices: 42825523--42825623 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
42825513 ATAGTGAATC
*
42825523 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
42825552 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
42825580 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
42825610 CGCACACTTAGTGC
1 CGCACACTTAGTGC
42825624 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:42841388 original size:17 final size:17
Alignment explanation
Indices: 42841362--42841407 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
42841352 TGTTTTTTTA
42841362 AAAAAATAAAGAATTAG
1 AAAAAATAAAGAATTAG
* * *
42841379 AAAAATTAAA-ATTTTG
1 AAAAAATAAAGAATTAG
42841395 AAAAAATAAAGAA
1 AAAAAATAAAGAA
42841408 AATATTTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.22
Consensus pattern (17 bp):
AAAAAATAAAGAATTAG
Found at i:42852756 original size:16 final size:16
Alignment explanation
Indices: 42852735--42852766 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
42852725 TTTTTTTAGA
42852735 CATAAGTATGTAATAT
1 CATAAGTATGTAATAT
42852751 CATAAGTATGTAATAT
1 CATAAGTATGTAATAT
42852767 TTATAACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (16 bp):
CATAAGTATGTAATAT
Found at i:42854381 original size:17 final size:17
Alignment explanation
Indices: 42854346--42854386 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
42854336 TTAAATTTTT
42854346 TATATG-AATATAAATA
1 TATATGTAATATAAATA
42854362 TATATGTAAT-TAAGATA
1 TATATGTAATATAA-ATA
*
42854379 TATCTGTA
1 TATATGTA
42854387 TAAATGAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.41
Consensus pattern (17 bp):
TATATGTAATATAAATA
Found at i:42856796 original size:28 final size:28
Alignment explanation
Indices: 42856764--42856821 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
42856754 GTGCCATTGA
*
42856764 TGGCAAGCAAGTGGCTACATGACAACAG
1 TGGCAAGCAAGTGGCTACATAACAACAG
*
42856792 TGGCAAGCAAGTGGCTACATAACAATAG
1 TGGCAAGCAAGTGGCTACATAACAACAG
42856820 TG
1 TG
42856822 AGGATGACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (28 bp):
TGGCAAGCAAGTGGCTACATAACAACAG
Found at i:42860620 original size:43 final size:42
Alignment explanation
Indices: 42860528--42860640 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 42
42860518 TGTGGTTATG
* ** *
42860528 TGTAAGACCATGTTTGGGACATTGGCATCATTATATGATTTCG
1 TGTAAGACCATGTCTGGGACA-TGGCATCATTATATGATAACA
* * *
42860571 TATAAGACCCTGTCTGGGACAGTGGCATCGA-TATGTGATAACA
1 TGTAAGACCATGTCTGGGACA-TGGCATC-ATTATATGATAACA
* *
42860614 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
42860641 TGTACGAGCT
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 6 0.11
43 50 0.88
44 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATCATTATATGATAACA
Found at i:42863942 original size:18 final size:18
Alignment explanation
Indices: 42863921--42863984 Score: 83
Period size: 18 Copynumber: 3.6 Consensus size: 18
42863911 TAACATTCAA
42863921 TTATTCAGTAGCAATTAG
1 TTATTCAGTAGCAATTAG
* * *
42863939 TTATTCAGTAACAATCAT
1 TTATTCAGTAGCAATTAG
*
42863957 TTGTTCAGTAGCAATTAG
1 TTATTCAGTAGCAATTAG
*
42863975 TTATTTAGTA
1 TTATTCAGTA
42863985 ACGATCAATT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (18 bp):
TTATTCAGTAGCAATTAG
Found at i:42863964 original size:36 final size:36
Alignment explanation
Indices: 42863909--42863996 Score: 131
Period size: 36 Copynumber: 2.4 Consensus size: 36
42863899 AGTTTCATTT
*
42863909 AGTAACATTCAATTATTCAGTAGCAATTAGTTATTC
1 AGTAACAATCAATTATTCAGTAGCAATTAGTTATTC
* * *
42863945 AGTAACAATCATTTGTTCAGTAGCAATTAGTTATTT
1 AGTAACAATCAATTATTCAGTAGCAATTAGTTATTC
*
42863981 AGTAACGATCAATTAT
1 AGTAACAATCAATTAT
42863997 ATAGTATCAG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (36 bp):
AGTAACAATCAATTATTCAGTAGCAATTAGTTATTC
Found at i:42874373 original size:5 final size:5
Alignment explanation
Indices: 42874363--42874387 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
42874353 TGGCTCATTT
42874363 CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC
42874388 AACCCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:42880562 original size:29 final size:29
Alignment explanation
Indices: 42880520--42880575 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
42880510 ACTATTATTA
*
42880520 TTAAATCAATTCAGTTAAATCAATTAAAAC
1 TTAAATCAAATCAGTT-AATCAATTAAAAC
*
42880550 TTAAAT-AAATCAGTTAGTCAATTAAA
1 TTAAATCAAATCAGTTAATCAATTAAA
42880576 GTATGAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.42
29 8 0.33
30 6 0.25
ACGTcount: A:0.50, C:0.11, G:0.05, T:0.34
Consensus pattern (29 bp):
TTAAATCAAATCAGTTAATCAATTAAAAC
Found at i:42891696 original size:33 final size:33
Alignment explanation
Indices: 42891659--42891724 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
42891649 TGTCTGGTTC
42891659 AAGATAGTCCATTAATGCCACTTGTGAAGCATT
1 AAGATAGTCCATTAATGCCACTTGTGAAGCATT
42891692 AAGATAGTCCATTAATGCCACTTGTGAAGCATT
1 AAGATAGTCCATTAATGCCACTTGTGAAGCATT
42891725 GAGAAGAGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (33 bp):
AAGATAGTCCATTAATGCCACTTGTGAAGCATT
Found at i:42900442 original size:10 final size:10
Alignment explanation
Indices: 42900423--42900465 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
42900413 AACAAATTTT
*
42900423 TTTAAATATA
1 TTTAATTATA
*
42900433 TATAATTATA
1 TTTAATTATA
42900443 TTTAATT-TAA
1 TTTAATTAT-A
42900453 TTTAATTATA
1 TTTAATTATA
42900463 TTT
1 TTT
42900466 TGTTTTTATC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
9 1 0.04
10 26 0.93
11 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TTTAATTATA
Found at i:42901720 original size:2 final size:2
Alignment explanation
Indices: 42901671--42901707 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
42901661 TAATTTTTGA
42901671 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
42901708 ATAAGTTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:42901943 original size:21 final size:21
Alignment explanation
Indices: 42901919--42901973 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 21
42901909 AGTATTCATA
42901919 AATATATTATTCATTTTATTT
1 AATATATTATTCATTTTATTT
*
42901940 AATAT-TTA---AGTTTATTT
1 AATATATTATTCATTTTATTT
42901957 AATATA-TATTGCATTTT
1 AATATATTATT-CATTTT
42901974 TATAATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 10
0.69 0.05 0.26
Matches are distributed among these distances:
17 15 0.56
20 3 0.11
21 9 0.33
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (21 bp):
AATATATTATTCATTTTATTT
Found at i:42903011 original size:57 final size:57
Alignment explanation
Indices: 42902947--42903061 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
42902937 AAATCTCAGT
42902947 TGTTTTAATTAAAAATAACTTTGTAATGAAACTGAATTAATAAATGTAATAAAATAA
1 TGTTTTAATTAAAAATAACTTTGTAATGAAACTGAATTAATAAATGTAATAAAATAA
42903004 TGTTTTAATTAAAAATAACTTTGTAATGAAACTGAATTAATAAATGTAATAAAATAA
1 TGTTTTAATTAAAAATAACTTTGTAATGAAACTGAATTAATAAATGTAATAAAATAA
42903061 T
1 T
42903062 TTTAATAGTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.50, C:0.03, G:0.09, T:0.37
Consensus pattern (57 bp):
TGTTTTAATTAAAAATAACTTTGTAATGAAACTGAATTAATAAATGTAATAAAATAA
Found at i:42909082 original size:9 final size:9
Alignment explanation
Indices: 42909070--42909105 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
42909060 TTAATTATTT
42909070 TAAAAAATA
1 TAAAAAATA
*
42909079 TAAAAATTA
1 TAAAAAATA
42909088 TAAAAATATA
1 TAAAAA-ATA
42909098 TAAAAAAT
1 TAAAAAAT
42909106 TTTAGAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (9 bp):
TAAAAAATA
Found at i:42909124 original size:21 final size:20
Alignment explanation
Indices: 42909070--42909106 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
42909060 TTAATTATTT
42909070 TAAAAA-ATAT-AAAAATTA
1 TAAAAATATATAAAAAATTA
42909088 TAAAAATATATAAAAAATT
1 TAAAAATATATAAAAAATT
42909107 TTAGAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 4 0.24
20 7 0.41
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
TAAAAATATATAAAAAATTA
Found at i:42909149 original size:30 final size:30
Alignment explanation
Indices: 42909099--42909159 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
42909089 AAAAATATAT
*
42909099 AAAAAATTTTAGAAATTATTTAAAAATTCAA
1 AAAAAATTTTAGAAAGTATTT-AAAATTCAA
* *
42909130 AAAAAATTTTA-CAAGTATTTACAATTCAA
1 AAAAAATTTTAGAAAGTATTTAAAATTCAA
42909159 A
1 A
42909160 TATATACATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 9 0.33
30 7 0.26
31 11 0.41
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (30 bp):
AAAAAATTTTAGAAAGTATTTAAAATTCAA
Found at i:42911285 original size:30 final size:30
Alignment explanation
Indices: 42911249--42911311 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
42911239 ATTTATTTTA
42911249 TTGTTAATTTTGTTATTATTTTAAAAACAT
1 TTGTTAATTTTGTTATTATTTTAAAAACAT
* *
42911279 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAAACAT
42911309 TTG
1 TTG
42911312 ATTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAAACAT
Found at i:42913161 original size:39 final size:39
Alignment explanation
Indices: 42913043--42913224 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
42913033 TCGTTCAAAC
* * ** * **
42913043 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
42913083 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
42913123 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
42913162 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
42913201 GCCTTCGGGCTTAGCCCGGATATC
1 GCCTTCGGGCTTAGCCCGGATATC
42913225 GCTCGAACAT
Statistics
Matches: 125, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 87 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:42930596 original size:2 final size:2
Alignment explanation
Indices: 42930589--42930630 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
42930579 AATGTTTAAG
42930589 TA TA TA TA TA TA TA TA TA TA T- TA TA -A TA TA TA T- TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
42930627 TA TA
1 TA TA
42930631 ATAAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
1 4 0.11
2 32 0.89
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:42930604 original size:10 final size:10
Alignment explanation
Indices: 42930589--42930630 Score: 56
Period size: 9 Copynumber: 4.6 Consensus size: 10
42930579 AATGTTTAAG
42930589 TATATATATA
1 TATATATATA
42930599 TATATATATA
1 TATATATATA
42930609 T-TATA-ATA
1 TATATATATA
42930617 TATAT-TATA
1 TATATATATA
42930626 T-TATA
1 TATATA
42930631 ATAAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.24
9 11 0.38
10 11 0.38
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TATATATATA
Found at i:42931410 original size:24 final size:24
Alignment explanation
Indices: 42931366--42931412 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
42931356 ATTAAAATGG
42931366 ATTGATTTAGTATGTGATGAATTT
1 ATTGATTTAGTATGTGATGAATTT
42931390 ATTGAATTTA-TAT-TGATTGAATT
1 ATTG-ATTTAGTATGTGA-TGAATT
42931413 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGATTTAGTATGTGATGAATTT
Found at i:42933623 original size:26 final size:26
Alignment explanation
Indices: 42933568--42933626 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
42933558 GACTCACCAC
*
42933568 AAAGGCTTCCCCAAATAAATCGCCAT
1 AAAGGCTTCCCCAAACAAATCGCCAT
* *
42933594 AAAGGCTT-TCCAAACAATTCGCCAT
1 AAAGGCTTCCCCAAACAAATCGCCAT
*
42933619 AAAAGCTT
1 AAAGGCTT
42933627 GGTTTGGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 21 0.72
26 8 0.28
ACGTcount: A:0.39, C:0.27, G:0.12, T:0.22
Consensus pattern (26 bp):
AAAGGCTTCCCCAAACAAATCGCCAT
Found at i:42936966 original size:22 final size:21
Alignment explanation
Indices: 42936939--42937002 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 21
42936929 ACAGAGAGCA
*
42936939 AAAAAATGCTAATCACAGAGT
1 AAAAAATGCTAATCAAAGAGT
*
42936960 ACCAAAATGCTGAA-CAAAGAGT
1 A-AAAAATGCT-AATCAAAGAGT
42936982 AAAAAAGTGCTAATCAAAGAG
1 AAAAAA-TGCTAATCAAAGAG
42937003 CACATAAGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
21 7 0.19
22 27 0.75
23 2 0.06
ACGTcount: A:0.53, C:0.14, G:0.17, T:0.16
Consensus pattern (21 bp):
AAAAAATGCTAATCAAAGAGT
Found at i:42937011 original size:22 final size:22
Alignment explanation
Indices: 42936986--42937027 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
42936976 AAGAGTAAAA
42936986 AAGTGCTAATCAAAGAGCACAT
1 AAGTGCTAATCAAAGAGCACAT
* *
42937008 AAGTGCTAATTAGAGAGCAC
1 AAGTGCTAATCAAAGAGCAC
42937028 CGATGTGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19
Consensus pattern (22 bp):
AAGTGCTAATCAAAGAGCACAT
Found at i:42942077 original size:19 final size:19
Alignment explanation
Indices: 42942040--42942078 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
42942030 AAAGCCAAAT
**
42942040 TCTTTCTTCTTCTTTTCTC
1 TCTTTCTTCTTCTCATCTC
*
42942059 TCTTTCTTTTTCTCATCTC
1 TCTTTCTTCTTCTCATCTC
42942078 T
1 T
42942079 TCCTTCCTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.67
Consensus pattern (19 bp):
TCTTTCTTCTTCTCATCTC
Found at i:42944792 original size:40 final size:39
Alignment explanation
Indices: 42944624--42944794 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
42944614 AGAAATTGAA
* *
42944624 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
42944664 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
42944704 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
42944744 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
42944784 TGATATCCGGG
1 TGATATCCGGG
42944795 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:42952831 original size:40 final size:39
Alignment explanation
Indices: 42952663--42952833 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
42952653 AGAAATTGAA
* *
42952663 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
42952703 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
42952743 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
42952783 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
42952823 TGATATCCGGG
1 TGATATCCGGG
42952834 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:42958220 original size:35 final size:35
Alignment explanation
Indices: 42958181--42958253 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
42958171 GGTATGTGAT
42958181 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
42958216 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
42958251 ATA
1 ATA
42958254 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:42958601 original size:39 final size:39
Alignment explanation
Indices: 42958547--42958625 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
42958537 AAGTGTTATG
42958547 TGATTTCGAACATTTGGTTTGTTTTTAAGTTCAACTGTT
1 TGATTTCGAACATTTGGTTTGTTTTTAAGTTCAACTGTT
42958586 TGATTTCGAACATTTGGTTTGTTTTTAAGTTCAACTGTT
1 TGATTTCGAACATTTGGTTTGTTTTTAAGTTCAACTGTT
42958625 T
1 T
42958626 AAATTGCTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.20, C:0.10, G:0.18, T:0.52
Consensus pattern (39 bp):
TGATTTCGAACATTTGGTTTGTTTTTAAGTTCAACTGTT
Found at i:42960297 original size:17 final size:17
Alignment explanation
Indices: 42960247--42960297 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
42960237 AAATAACTGA
*
42960247 GATAAAAATAAATAAAT
1 GATAAAAATAAATAAAC
* * *
42960264 AAGAAAAATAAACAAAC
1 GATAAAAATAAATAAAC
*
42960281 GATAAAAATCAATAAAC
1 GATAAAAATAAATAAAC
42960298 CAATCAGGAA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.71, C:0.08, G:0.06, T:0.16
Consensus pattern (17 bp):
GATAAAAATAAATAAAC
Found at i:42962537 original size:38 final size:38
Alignment explanation
Indices: 42962482--42962559 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
42962472 CTATTTAACC
*
42962482 ACATGTATAATCTATTCATCTAACATTTATATATCAAT
1 ACATGTATAATCCATTCATCTAACATTTATATATCAAT
42962520 ACATGTATAATCCATTCATCTAACATTTATATATCAAT
1 ACATGTATAATCCATTCATCTAACATTTATATATCAAT
42962558 AC
1 AC
42962560 TTCATTTGCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.40, C:0.18, G:0.03, T:0.40
Consensus pattern (38 bp):
ACATGTATAATCCATTCATCTAACATTTATATATCAAT
Found at i:42964235 original size:40 final size:40
Alignment explanation
Indices: 42964180--42964260 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
42964170 ATGCAAGTTC
42964180 TTAAAATTTCTTTCTATAACCATTTGGTGCATTTAACTAA
1 TTAAAATTTCTTTCTATAACCATTTGGTGCATTTAACTAA
42964220 TTAAAATTTCTTTCTATAACCATTTGGTGCATTTAACTAA
1 TTAAAATTTCTTTCTATAACCATTTGGTGCATTTAACTAA
42964260 T
1 T
42964261 AGATCTCATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.32, C:0.15, G:0.07, T:0.46
Consensus pattern (40 bp):
TTAAAATTTCTTTCTATAACCATTTGGTGCATTTAACTAA
Found at i:42975996 original size:32 final size:32
Alignment explanation
Indices: 42975955--42976019 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
42975945 TGAAATGTGA
42975955 ACTATCTGAGTGTGACAGTTATGACTGGACAG
1 ACTATCTGAGTGTGACAGTTATGACTGGACAG
*
42975987 ACTATCTGAGTGTGATAGTTATGACTGGACAG
1 ACTATCTGAGTGTGACAGTTATGACTGGACAG
42976019 A
1 A
42976020 TTTAGCAGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (32 bp):
ACTATCTGAGTGTGACAGTTATGACTGGACAG
Found at i:42976480 original size:30 final size:30
Alignment explanation
Indices: 42976435--42976512 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 30
42976425 CATAGTATCG
*
42976435 TATCTTGGGTTTCTTTATCCTG-GATCTTTT-
1 TATCTTGGATTTCTTTATCCTGAG-T-TTTTC
* *
42976465 TATTTTGGATTTCTTTATTCTGAGTTTTTC
1 TATCTTGGATTTCTTTATCCTGAGTTTTTC
*
42976495 TATCTTGAATTTCTTTAT
1 TATCTTGGATTTCTTTAT
42976513 TCAGTTTTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 4 0.10
30 36 0.88
31 1 0.02
ACGTcount: A:0.14, C:0.13, G:0.13, T:0.60
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATCCTGAGTTTTTC
Found at i:42978369 original size:46 final size:46
Alignment explanation
Indices: 42978216--42978384 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
42978206 GGGTATTTTA
* * *
42978216 CGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACT
1 CGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAGCT
* *
42978262 CGTTGAGTTGAGTCTGAG-T---TTGTGAGATG-TAACTAGGTATCCGAGCT
1 CGTTGAGTTGAGTCTGAGTTCACTTATG-GATGCGAAC---G--TCCGAGCT
*
42978309 CGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCT
1 CGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAGCT
*
42978355 CGTTGAGTTGAGTCTGAGTTCGCTTATGGA
1 CGTTGAGTTGAGTCTGAGTTCACTTATGGA
42978385 CGGGTTACAT
Statistics
Matches: 103, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 6 0.06
43 4 0.04
45 2 0.02
46 53 0.51
47 25 0.24
48 2 0.02
50 4 0.04
51 7 0.07
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.32
Consensus pattern (46 bp):
CGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAGCT
Found at i:42982196 original size:44 final size:44
Alignment explanation
Indices: 42982135--42982817 Score: 983
Period size: 44 Copynumber: 15.5 Consensus size: 44
42982125 GAGATAATGA
* *
42982135 AGATCGAAGATAACAGATTTGGTGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
*
42982179 AGATCGAAGATAGCAGATTTGACGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * *
42982223 ATATCGAAGATAGTAGATTTGGAGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* *
42982267 AGATCGAAGAGAACAGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * *
42982311 AGATCGAAGAGAACAGATTTGGCGTCTCTGTATCGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* **
42982355 AGATCGAAGATAGTAGATTTGATGTCTCTGTATTGT-AGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
*
42982398 AGATC-ACAGATAGCAGATTTGGCGTCTCTGTATTATCAGAGAGC
1 AGATCGA-AGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * *
42982442 AGATCGAAGATAGCAGATTTGACGTCTCTGTATTGTCAAAGAGT
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
*
42982486 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * * *
42982530 ATATCGAAGAGAACAGATTTGGCGTCTTTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* *
42982574 AGATCGAAGAATAGCAGATTTGGCGTTTCTGTATTGTTAGAGAGC
1 AGATCGAAG-ATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
42982619 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * *
42982663 AGATCAAAGATAGCGGATTTGACGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * ** *
42982707 AGATCGAAGATAACAAATTTGGTATCTCTGTATTGTCAGAGAGT
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * *
42982751 AGATCAAAGATAGCAGATTCGACGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
* * *
42982795 AGGTCGGAGATAACAGATTTGGC
1 AGATCGAAGATAGCAGATTTGGC
42982818 ATTCTTGAGT
Statistics
Matches: 566, Mismatches: 69, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
42 1 0.00
43 37 0.07
44 488 0.86
45 40 0.07
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.28
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
Found at i:42984466 original size:12 final size:12
Alignment explanation
Indices: 42984449--42984514 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
42984439 TTTTTATTTA
*
42984449 TATATTATTCAT
1 TATATTATACAT
**
42984461 TATATTAT-TTT
1 TATATTATACAT
42984472 TATTATTATACAT
1 TA-TATTATACAT
* *
42984485 TTTATTTATAAAT
1 TATA-TTATACAT
*
42984498 TTTATTATACAT
1 TATATTATACAT
42984510 TATAT
1 TATAT
42984515 ATTTTACTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
11 3 0.07
12 27 0.63
13 13 0.30
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.61
Consensus pattern (12 bp):
TATATTATACAT
Found at i:42984493 original size:25 final size:25
Alignment explanation
Indices: 42984436--42984510 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 25
42984426 ATAGTATATA
*
42984436 TTATTT-TTATTTATATATTATTCATT
1 TTATTTATT-TTTAT-TATTATACATT
*
42984462 ATA-TTATTTTTATTATTATACATT
1 TTATTTATTTTTATTATTATACATT
**
42984486 TTATTTATAAATT-TTATTATACATT
1 TTATTTAT-TTTTATTATTATACATT
42984511 ATATATTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
24 12 0.29
25 23 0.56
26 6 0.15
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (25 bp):
TTATTTATTTTTATTATTATACATT
Found at i:42984699 original size:51 final size:51
Alignment explanation
Indices: 42984635--42984731 Score: 194
Period size: 51 Copynumber: 1.9 Consensus size: 51
42984625 TAAATAATTG
42984635 TATATATATATTATCCTTATTTATATGATAGTTATCATATTATTATTTCGT
1 TATATATATATTATCCTTATTTATATGATAGTTATCATATTATTATTTCGT
42984686 TATATATATATTATCCTTATTTATATGATAGTTATCATATTATTAT
1 TATATATATATTATCCTTATTTATATGATAGTTATCATATTATTAT
42984732 ATTTCATTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (51 bp):
TATATATATATTATCCTTATTTATATGATAGTTATCATATTATTATTTCGT
Found at i:42984783 original size:10 final size:10
Alignment explanation
Indices: 42984717--42984787 Score: 51
Period size: 10 Copynumber: 7.2 Consensus size: 10
42984707 TATATGATAG
42984717 TTATCATATTA
1 TTAT-ATATTA
42984728 TTATAT-TTCA
1 TTATATATT-A
42984738 TTATAT-TTCA
1 TTATATATT-A
*
42984748 TT-TATATTT
1 TTATATATTA
* *
42984757 TTTTACA-TA
1 TTATATATTA
*
42984766 TCATATATTA
1 TTATATATTA
42984776 TTATATATTA
1 TTATATATTA
42984786 TT
1 TT
42984788 CCCTATATTA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
9 12 0.24
10 33 0.67
11 4 0.08
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (10 bp):
TTATATATTA
Found at i:42984818 original size:7 final size:7
Alignment explanation
Indices: 42984804--42984839 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
42984794 ATTACTTCCT
42984804 TTTATTA
1 TTTATTA
*
42984811 TATATTA
1 TTTATTA
42984818 TTTCATTA
1 TTT-ATTA
42984826 TTTATTA
1 TTTATTA
42984833 TTTATTA
1 TTTATTA
42984840 GTATAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATTA
Found at i:42984831 original size:15 final size:14
Alignment explanation
Indices: 42984804--42984844 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
42984794 ATTACTTCCT
42984804 TTTATTATATATTA
1 TTTATTATATATTA
*
42984818 TTTCATTATTTATTA
1 TTT-ATTATATATTA
42984833 TTTATTAGTATA
1 TTTATTA-TATA
42984845 AAAAAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTATTATATATTA
Found at i:42985056 original size:14 final size:14
Alignment explanation
Indices: 42985034--42985073 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
42985024 TATTGCTTAA
42985034 TATTTTTTTTATTT
1 TATTTTTTTTATTT
* *
42985048 TATTGTTTTCATTT
1 TATTTTTTTTATTT
*
42985062 TGTTTTTTTTAT
1 TATTTTTTTTAT
42985074 CCTTCTTTTA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.12, C:0.03, G:0.05, T:0.80
Consensus pattern (14 bp):
TATTTTTTTTATTT
Found at i:42987904 original size:14 final size:14
Alignment explanation
Indices: 42987885--42987911 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42987875 AGAAAATGTA
42987885 TTTAGAGTTATGAC
1 TTTAGAGTTATGAC
42987899 TTTAGAGTTATGA
1 TTTAGAGTTATGA
42987912 TTACTATATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.44
Consensus pattern (14 bp):
TTTAGAGTTATGAC
Found at i:42991418 original size:20 final size:21
Alignment explanation
Indices: 42991393--42991447 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 21
42991383 TTAAGATAAT
42991393 AAAATAAAATAAAAAATTT-G
1 AAAATAAAATAAAAAATTTAG
*
42991413 AAAATACAAA-AATAAATTTAAG
1 AAAATA-AAATAAAAAATTT-AG
42991435 AAAATAAAATAAA
1 AAAATAAAATAAA
42991448 TTGGTAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 14 0.48
21 6 0.21
22 9 0.31
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.22
Consensus pattern (21 bp):
AAAATAAAATAAAAAATTTAG
Found at i:42992316 original size:13 final size:13
Alignment explanation
Indices: 42992298--42992363 Score: 63
Period size: 13 Copynumber: 5.5 Consensus size: 13
42992288 AAGAATTTTC
42992298 CTAAATATTATCA
1 CTAAATATTATCA
42992311 CTAAATA--ATC-
1 CTAAATATTATCA
42992321 CTAAATATTATCA
1 CTAAATATTATCA
* *
42992334 CTACATA--AT-T
1 CTAAATATTATCA
*
42992344 CTACATATTATCA
1 CTAAATATTATCA
42992357 CTAAATA
1 CTAAATA
42992364 ATTCAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
10 14 0.33
11 5 0.12
12 5 0.12
13 19 0.44
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:42992366 original size:23 final size:23
Alignment explanation
Indices: 42992298--42992372 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
42992288 AAGAATTTTC
*
42992298 CTAAATATTATCACTAAATAATC
1 CTAAATATTATCACTAAATAATT
*
42992321 CTAAATATTATCACTACATAATT
1 CTAAATATTATCACTAAATAATT
*
42992344 CTACATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
42992367 CAAAAT
1 CTAAAT
42992373 TTAAAAATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:42996447 original size:31 final size:31
Alignment explanation
Indices: 42996404--42996482 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
42996394 TTTAACGGTT
42996404 ACTGGGCTGAAGCCTTTTCATAAATCAAATC
1 ACTGGGCTGAAGCCTTTTCATAAATCAAATC
* * *
42996435 ATTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCAAATC
*
42996466 ACTGGGTTGAAGCCTTT
1 ACTGGGCTGAAGCCTTT
42996483 ATTGTAAACG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (31 bp):
ACTGGGCTGAAGCCTTTTCATAAATCAAATC
Found at i:42996570 original size:42 final size:42
Alignment explanation
Indices: 42996506--42996597 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
42996496 TGGCCCATAG
*
42996506 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
* *
42996548 GCCCATTTCAATATCACCTGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
42996590 GCCTATTT
1 GCCCATTT
42996598 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:42996770 original size:25 final size:26
Alignment explanation
Indices: 42996742--42996838 Score: 162
Period size: 25 Copynumber: 3.8 Consensus size: 26
42996732 CCTCTTTAAT
42996742 AACTGGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
42996767 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
42996792 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
42996818 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
42996839 GCACTTCCTC
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
25 34 0.50
26 34 0.50
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:42996813 original size:51 final size:51
Alignment explanation
Indices: 42996742--42996838 Score: 169
Period size: 51 Copynumber: 1.9 Consensus size: 51
42996732 CCTCTTTAAT
42996742 AACTGGGGCAAAGCCCTTTTCAGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATA
*
42996792 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTT
42996839 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
50 10 0.23
51 24 0.55
52 10 0.23
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (51 bp):
AACTGGGGCAAAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:42996913 original size:20 final size:20
Alignment explanation
Indices: 42996888--42996963 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
42996878 TTATGAATTC
*
42996888 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
42996908 ATCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
*
42996928 ATCATATGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
42996948 ATCATGT--ATATCATAC
1 ATCATGTGCATATCATAC
42996964 CCCACGTATC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.16
20 39 0.78
21 2 0.04
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:42996944 original size:11 final size:11
Alignment explanation
Indices: 42996888--42996945 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
42996878 TTATGAATTC
*
42996888 ATCATGTGCAT
1 ATCATATGCAT
*
42996899 TTCATA--CAT
1 ATCATATGCAT
*
42996908 ATCATGTGCAT
1 ATCATATGCAT
42996919 ATC--ATGCAT
1 ATCATATGCAT
42996928 ATCATATGCAT
1 ATCATATGCAT
42996939 ATCATAT
1 ATCATAT
42996946 CAATCATGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
9 15 0.39
11 23 0.61
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:42997727 original size:26 final size:26
Alignment explanation
Indices: 42997661--42997727 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
42997651 GGGCATATTC
42997661 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACC-TACAAGGGTATTACG
* *
42997688 GTCACTTTATCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAAGGG-TATTACG
*
42997715 GTCTTTTTACCTA
1 GTCATTTTACCTA
42997728 TTAGGGGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.12
27 27 0.79
28 3 0.09
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGTATTACG
Found at i:42997809 original size:27 final size:27
Alignment explanation
Indices: 42997756--42998088 Score: 226
Period size: 27 Copynumber: 12.3 Consensus size: 27
42997746 TTTCATCCTA
* * * *
42997756 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
42997783 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * * *
42997810 TAATGATATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * *
42997839 CAAGGGTATTTCT-ATAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* * * *
42997866 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * *
42997893 TGAGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
42997920 C-AGTGGTATTTTGGTAACTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * *
42997947 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
42997974 CAGGGGTATTTTAGCAATTTTATAGAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
42998001 C-AGGGTATTTTGGTAATTTTACT-AAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* *
42998027 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
42998054 CAAGGGTATTTTAGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
42998081 CGAGGGTA
1 CAAGGGTA
42998089 AAACAGTAAT
Statistics
Matches: 245, Mismatches: 52, Indels: 18
0.78 0.17 0.06
Matches are distributed among these distances:
26 23 0.09
27 193 0.79
28 15 0.06
29 14 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:42998054 original size:80 final size:81
Alignment explanation
Indices: 42997867--42998079 Score: 270
Period size: 80 Copynumber: 2.6 Consensus size: 81
42997857 TTTGTAAATT
** * * *
42997867 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTTATAAACCAGTGGTATTT
*
42997931 TGGTAACTTTACAAACT
65 TGGTAACTTTACAAACG
* *
42997948 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTATAGACCAG-GGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACCAGTGGTATTTT
* *
42998012 GGTAATTTTACTAATCG
66 GGTAACTTTAC-AAACG
** *
42998029 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAA
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAA
42998080 TCGAGGGTAA
Statistics
Matches: 115, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
80 63 0.55
81 51 0.44
82 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACCAGTGGTATTTT
GGTAACTTTACAAACG
Found at i:42998096 original size:27 final size:27
Alignment explanation
Indices: 42998067--42998410 Score: 481
Period size: 27 Copynumber: 12.7 Consensus size: 27
42998057 GGGTATTTTA
* *
42998067 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
** ** *
42998094 GTAATTCTGCAAATTAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
42998121 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
42998148 GTAATTCTATAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
42998175 ATAATTCTATAAATCGAGGGTAATACG
1 GTAATTCTATAAATCGAGGGTAAAACG
42998202 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
42998229 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
42998256 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
42998283 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
42998310 GTAATTCTATAAATCGATGATAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
42998337 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
42998364 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
42998391 GTAATTTTACAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
42998411 AATTTCAGTA
Statistics
Matches: 285, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 285 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:42998115 original size:134 final size:134
Alignment explanation
Indices: 42997869--42998115 Score: 291
Period size: 134 Copynumber: 1.8 Consensus size: 134
42997859 TGTAAATTAG
* *
42997869 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTAG
* ***** * *
42997934 TAACTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGCAATTTTATAG
66 TAACTTTACAAACGAGGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTTAGCAATTTTATAG
42997999 ACCA
131 ACCA
* ***
42998003 GGGTATTTTGGTAATTTTACTAATCGAGGGTATTTTGGTAATTTTGTAAACCAAG-GGTATTTTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAACC-AGTGGTATTTTA
* * * **
42998067 GTAATTTTATAAATCGA-GGGTAAAACAGTAATTCTGCAAATTAAGGGTA
65 GTAACTTTACAAA-CGAGGGGTAAAACAGTAATTCTACAAACCAAGGGTA
42998116 AAATGGTAAT
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
134 88 0.96
135 4 0.04
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (134 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTCACAAACCAGTGGTATTTTAG
TAACTTTACAAACGAGGGGTAAAACAGTAATTCTACAAACCAAGGGTATTTTAGCAATTTTATAG
ACCA
Found at i:43005748 original size:43 final size:43
Alignment explanation
Indices: 43005670--43005822 Score: 186
Period size: 43 Copynumber: 3.6 Consensus size: 43
43005660 CCGATATGTG
* * *
43005670 TTTTCGTGTAACACCACGTCTGGGAGATCGGCATCATATTTTA
1 TTTTCATGTAAGACCATGTCTGGGAGATCGGCATCATATTTTA
* *
43005713 TTTTTAGGTAAGACCATGTCTGGGAGATCGGCATCATATTTTA
1 TTTTCATGTAAGACCATGTCTGGGAGATCGGCATCATATTTTA
* * *
43005756 -TTTCATGTAAGACCCTGTCTGGGACAGT-GGCATCGATA-TTTG
1 TTTTCATGTAAGACCATGTCTGGGAGA-TCGGCATC-ATATTTTA
*
43005798 TTTACATGTAAGACCATGTCTGGGA
1 TTTTCATGTAAGACCATGTCTGGGA
43005823 TGTTGGCATT
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 31 0.33
43 64 0.67
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (43 bp):
TTTTCATGTAAGACCATGTCTGGGAGATCGGCATCATATTTTA
Found at i:43013981 original size:30 final size:30
Alignment explanation
Indices: 43013947--43014003 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
43013937 TTCCCGAGCC
*
43013947 TAGGGGTAAAAGTGTAAATATGCAAAATTT
1 TAGGGGCAAAAGTGTAAATATGCAAAATTT
* * *
43013977 TAGGGGCAAAATTGTAATTATGTAAAA
1 TAGGGGCAAAAGTGTAAATATGCAAAA
43014004 ATTTGAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAATTT
Found at i:43019733 original size:43 final size:42
Alignment explanation
Indices: 43019578--43019734 Score: 115
Period size: 43 Copynumber: 3.7 Consensus size: 42
43019568 TGTATTTTTG
* * * *
43019578 TGTAAGACCACGTCTGGGATGTTGGCATCGACT-TATGACTTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATC-AATAT-TTA-TTTCA
* * * * * **
43019622 TGTAAGATCATGTCTGGGACATCGACAT-TGTATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCAATATTT-ATTTCA
*
43019664 TGTAAGACC-CTGTCTGGGATAG-TGGCATCAATATTTATTTGCA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCAATATTTATTT-CA
43019707 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
43019735 TGTACGAGCT
Statistics
Matches: 86, Mismatches: 19, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
42 31 0.36
43 32 0.37
44 23 0.27
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCAATATTTATTTCA
Found at i:43021086 original size:8 final size:8
Alignment explanation
Indices: 43021073--43021097 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
43021063 GTTTCGATGA
43021073 CCTTTAAT
1 CCTTTAAT
43021081 CCTTTAAT
1 CCTTTAAT
43021089 CCTTTAAT
1 CCTTTAAT
43021097 C
1 C
43021098 GTAAAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (8 bp):
CCTTTAAT
Found at i:43022966 original size:28 final size:29
Alignment explanation
Indices: 43022919--43022977 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 29
43022909 GGTCATAACG
*
43022919 AAAACAAGCAAAAATTAGAAATTTTCACC
1 AAAACAAGAAAAAATTAGAAATTTTCACC
43022948 AAAACAA-AAAAAATTAGAAATTTTCACC
1 AAAACAAGAAAAAATTAGAAATTTTCACC
43022976 AA
1 AA
43022978 TCCCTAGCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 22 0.76
29 7 0.24
ACGTcount: A:0.59, C:0.15, G:0.05, T:0.20
Consensus pattern (29 bp):
AAAACAAGAAAAAATTAGAAATTTTCACC
Found at i:43025032 original size:2 final size:2
Alignment explanation
Indices: 43025025--43025053 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
43025015 TTTGGCCACA
43025025 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
43025054 CATCTCATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:43025122 original size:46 final size:46
Alignment explanation
Indices: 43025055--43025192 Score: 136
Period size: 46 Copynumber: 2.9 Consensus size: 46
43025045 ATATATATAC
* * *
43025055 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
43025101 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
43025147 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCGCACATA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTA-C-CACATA
43025193 CGCATGTTCA
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
45 6 0.08
46 43 0.57
47 20 0.26
48 1 0.01
49 6 0.08
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:43025180 original size:47 final size:47
Alignment explanation
Indices: 43025118--43025333 Score: 360
Period size: 47 Copynumber: 4.6 Consensus size: 47
43025108 ACACATTTCG
* * * *
43025118 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
* *
43025165 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
43025212 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
43025259 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
43025306 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
43025334 TATATACAGG
Statistics
Matches: 160, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 160 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:43025214 original size:23 final size:23
Alignment explanation
Indices: 43025187--43025261 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
43025177 GGCCTTATCG
43025187 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
43025210 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
43025232 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
43025257 CACAT
1 CACAT
43025262 TGGCCATTCG
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 16 0.43
24 11 0.30
25 5 0.14
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:43025221 original size:94 final size:94
Alignment explanation
Indices: 43025118--43025359 Score: 367
Period size: 94 Copynumber: 2.5 Consensus size: 94
43025108 ACACATTTCG
*
43025118 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
43025183 ATCGCACATACGCATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* * **
43025212 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
43025277 ATCACACATACACATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* *
43025306 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
43025360 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
94 103 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACACATGTTCACATTCATCA
Found at i:43028745 original size:18 final size:18
Alignment explanation
Indices: 43028724--43028762 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
43028714 ATTCAAAATT
*
43028724 TAAAAATCAAATTTACAC
1 TAAAAATCAAATTTAAAC
* *
43028742 TAAATATTAAATTTAAAC
1 TAAAAATCAAATTTAAAC
43028760 TAA
1 TAA
43028763 TTACAGAGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAAATCAAATTTAAAC
Found at i:43030931 original size:27 final size:26
Alignment explanation
Indices: 43030898--43030988 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 26
43030888 CATGGCTGCT
*
43030898 AGAACAGATAATGTGACCA-AGTCACC
1 AGAACAGATAATGTG-CCAGAGCCACC
*
43030924 AGATACAGATAATCGTGGCAGAGCCACC
1 AGA-ACAGATAAT-GTGCCAGAGCCACC
**
43030952 AGAACAGATATATGTGGAAGAGCCACC
1 AGAACAGATA-ATGTGCCAGAGCCACC
*
43030979 AGATCAGATA
1 AGAACAGATA
43030989 TTTGTAGCAT
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
26 3 0.05
27 40 0.70
28 14 0.25
ACGTcount: A:0.41, C:0.21, G:0.23, T:0.15
Consensus pattern (26 bp):
AGAACAGATAATGTGCCAGAGCCACC
Done.