Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 145 of 433
Found at i:44863990 original size:37 final size:31
Alignment explanation
Indices: 44863908--44864005 Score: 160
Period size: 31 Copynumber: 3.2 Consensus size: 31
44863898 CTGATTTTTA
*
44863908 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
44863939 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
44863970 ATTCTGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
44864001 ATTCT
1 ATTCT
44864006 AATTCTAGTT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:44864020 original size:18 final size:18
Alignment explanation
Indices: 44863895--44864011 Score: 60
Period size: 19 Copynumber: 6.3 Consensus size: 18
44863885 TTGCATTCAC
*
44863895 ATTCTGATTTTTAATTCTG
1 ATTCTGA-TTCTAATTCTG
* *
44863914 -TTACCTGATACTGATTCTG
1 ATT--CTGATTCTAATTCTG
* *
44863933 ATTTTGATTCT-GTTACCTG
1 ATTCTGATTCTAATT--CTG
* *
44863952 ATACTGATTCTGATTCTG
1 ATTCTGATTCTAATTCTG
*
44863970 ATTCTG-TCACCTAATTCTG
1 ATTCTGAT--TCTAATTCTG
* *
44863989 ATTCTGATTCTGATTCTA
1 ATTCTGATTCTAATTCTG
44864007 ATTCT
1 ATTCT
44864012 AGTTCTGATA
Statistics
Matches: 74, Mismatches: 15, Indels: 19
0.69 0.14 0.18
Matches are distributed among these distances:
17 3 0.04
18 28 0.38
19 34 0.46
20 9 0.12
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (18 bp):
ATTCTGATTCTAATTCTG
Found at i:44864029 original size:24 final size:24
Alignment explanation
Indices: 44863918--44864036 Score: 62
Period size: 25 Copynumber: 4.9 Consensus size: 24
44863908 ATTCTGTTAC
* * *
44863918 CTGATACTGATTCTGATTTTGATT
1 CTGATAATGATTCTAATTCTGATT
* * * *
44863942 CTGTTACCTGATACTGATTCTGATT
1 CTGATA-ATGATTCTAATTCTGATT
** *
44863967 CTGATTCTG-TCACCTAATTCTGATT
1 CTGATAATGAT--TCTAATTCTGATT
**
44863992 CTGATTCTGATTCTAATTCT-AGTT
1 CTGATAATGATTCTAATTCTGA-TT
* *
44864016 CTGATAATGTTTCTTATTCTG
1 CTGATAATGATTCTAATTCTG
44864037 TAATGGGTTA
Statistics
Matches: 77, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
23 2 0.03
24 34 0.44
25 40 0.52
26 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (24 bp):
CTGATAATGATTCTAATTCTGATT
Found at i:44865991 original size:27 final size:27
Alignment explanation
Indices: 44865968--44866254 Score: 367
Period size: 27 Copynumber: 10.6 Consensus size: 27
44865958 TTAGTTTACC
44865968 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
44865995 AAATCACTAAAATACTCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
44866022 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
44866049 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
44866076 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
44866103 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
44866130 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
44866157 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
44866184 AAATTACCAAAATACCCTTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
44866211 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
44866238 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
44866255 TCGACCTGTA
Statistics
Matches: 226, Mismatches: 34, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 226 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:44866105 original size:81 final size:81
Alignment explanation
Indices: 44865968--44866308 Score: 378
Period size: 81 Copynumber: 4.2 Consensus size: 81
44865958 TTAGTTTACC
* * * * * *
44865968 AAATTACCAAAATACCCCTGGTTTGTAAAATCACTAAAATACTCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
* *
44866033 ATACCCCTGGTTTGTA
66 ATACCCTTAGTTTGTA
* ** *
44866049 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
* *
44866114 ATACCCTTTGTTTATA
66 ATACCCTTAGTTTGTA
* *
44866130 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
* *
44866195 ATACCCTTAATTTGTG
66 ATACCCTTAGTTTGTA
* * ** *** ***
44866211 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAA
* **
44866275 AATACCCTCAACTTGTA
65 AATACCCTTAGTTTGTA
*
44866292 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
44866309 TTGATTTACA
Statistics
Matches: 220, Mismatches: 39, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
80 4 0.02
81 216 0.98
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
ATACCCTTAGTTTGTA
Found at i:44866307 original size:27 final size:27
Alignment explanation
Indices: 44865968--44866309 Score: 210
Period size: 27 Copynumber: 12.7 Consensus size: 27
44865958 TTAGTTTACC
**
44865968 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-AATTTGTA
* * * *** *
44865995 AAATCACTAAAATACTCTTGGTTTATA
1 AAATTACCAAAATACCCTCAATTTGTA
* **
44866022 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-AATTTGTA
*** **
44866049 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCAATTTGTA
**
44866076 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-AATTTGTA
* *** *
44866103 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTCAATTTGTA
**
44866130 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-AATTTGTA
* *
44866157 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTC-AATTTGTA
* *
44866184 AAATTACCAAAATACCCTTAATTTGTG
1 AAATTACCAAAATACCCTCAATTTGTA
* *
44866211 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-AATTTGTA
** * **
44866238 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCAATTTGTA
*** *
44866265 AAATTATTGAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCTCAATTTGTA
*
44866292 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
44866310 TGATTTACAA
Statistics
Matches: 262, Mismatches: 44, Indels: 18
0.81 0.14 0.06
Matches are distributed among these distances:
27 261 1.00
28 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAATTTGTA
Found at i:44866321 original size:27 final size:26
Alignment explanation
Indices: 44865962--44866365 Score: 137
Period size: 27 Copynumber: 15.0 Consensus size: 26
44865952 GAATATTTAG
* * *
44865962 TTTACCAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** * * * *
44865989 TTTGTAAAATCACTAAAATACTCTTGG
1 TTTACAAAATTAC-CAAATACCCTTGA
* * * *
44866016 TTTATAAAATCACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** *
44866043 TTTGTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACC-AAATACCCTTGA
* *
44866070 TTTACAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** *
44866097 TTTGTAAAATTACTAAAATACCCTTTG-
1 TTTACAAAATTAC-CAAATACCC-TTGA
* * *
44866124 TTTATAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** * *
44866151 TTTGTAAAATTATCAAAATACCCCT-A
1 TTTACAAAATTA-CCAAATACCCTTGA
** *
44866177 GTTTGTAAAATTACCAAAATACCCTTAA
1 -TTTACAAAATTACC-AAATACCCTTGA
*** *
44866205 TTTGTGAAATTACCAAAATACCCCTGA
1 TTTACAAAATTACC-AAATACCCTTGA
*** * *
44866232 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTACAAAATTAC-CAAATACCCTTGA
** ** ** **
44866259 CCTGTAAAATTATTGAAATACCCTCAA
1 TTTACAAAATTA-CCAAATACCCTTGA
* **
44866286 CTTGTAAAATTACCAAAGTACCCTTGA
1 TTTACAAAATTACCAAA-TACCCTTGA
**** *
44866313 TTTACAAAATTACTGTTTTACCCTCGA
1 TTTACAAAATTAC-CAAATACCCTTGA
44866340 TTTACAAAATTACCGAAATACCCTTG
1 TTTACAAAATTACC-AAATACCCTTG
44866366 TAGGGTAGAA
Statistics
Matches: 304, Mismatches: 58, Indels: 30
0.78 0.15 0.08
Matches are distributed among these distances:
26 6 0.02
27 294 0.97
28 4 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (26 bp):
TTTACAAAATTACCAAATACCCTTGA
Found at i:44866349 original size:81 final size:81
Alignment explanation
Indices: 44866044--44866363 Score: 205
Period size: 81 Copynumber: 4.0 Consensus size: 81
44866034 TACCCCTGGT
* * ** *** **
44866044 TTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CTGGTTTGTAAAATT
1 TTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACTGAAATACCCTC-GACCTACAAAATT
** ****
44866108 ACTAAAATACCCTTTGT
65 ACCGAAATACCCTCAAC
* * ** * * ** **
44866125 TTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAAAATACCC-CTAGTTTGTAAAAT
1 TTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACT-GAAATACCCTCGA-CCTACAAAAT
* * *
44866188 TACCAAAATACCCTTAAT
64 TACCGAAATACCCTCAAC
* *** **
44866206 TTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACTGAAATACCCTCGACCTACAAAATTA
**
44866271 TTGAAATACCCTCAAC
66 CCGAAATACCCTCAAC
* * *** **
44866287 TTGTAAAATTACCAAAGTACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACTGAAATACCCTCGACCTACAAAATTA
44866352 CCGAAATACCCT
66 CCGAAATACCCT
44866364 TGTAGGGTAG
Statistics
Matches: 197, Mismatches: 38, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
81 194 0.98
82 3 0.02
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.32
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACTGAAATACCCTCGACCTACAAAATTA
CCGAAATACCCTCAAC
Found at i:44866380 original size:27 final size:27
Alignment explanation
Indices: 44866347--44866630 Score: 383
Period size: 27 Copynumber: 10.6 Consensus size: 27
44866337 CGATTTACAA
*
44866347 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
44866374 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
44866401 AATTATCGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
44866427 AATTATCGTAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
44866454 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
44866481 AATTACCGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
44866508 AATTACTGAAATTA-CCCTATAGGGTAG
1 AATTACCGAAA-TACCCCTGTAGGGTAG
*
44866535 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
44866562 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
44866589 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
44866616 AATTACCGAGATACC
1 AATTACCGAAATACC
44866631 TTGTGGGGGA
Statistics
Matches: 229, Mismatches: 25, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
26 27 0.12
27 200 0.87
28 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:44867127 original size:22 final size:22
Alignment explanation
Indices: 44867075--44867139 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
44867065 TTAAAGCCTT
* *
44867075 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
44867097 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
44867119 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
44867140 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:44867328 original size:27 final size:26
Alignment explanation
Indices: 44867298--44867426 Score: 168
Period size: 27 Copynumber: 4.8 Consensus size: 26
44867288 ATTCTGTTAA
* *
44867298 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
44867325 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
44867352 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
*
44867379 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGT-TCTG
* * *
44867406 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
44867427 ATAACTGAGC
Statistics
Matches: 95, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
26 9 0.09
27 79 0.83
28 7 0.07
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:44867612 original size:31 final size:31
Alignment explanation
Indices: 44867576--44867673 Score: 142
Period size: 31 Copynumber: 3.2 Consensus size: 31
44867566 CTGATTTTTA
* *
44867576 ATTCTGTTACCTGATACTGATTCAGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
44867607 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * * *
44867638 ATTCTATCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
44867669 ATTCT
1 ATTCT
44867674 AGTTCTGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.46
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:44867626 original size:6 final size:6
Alignment explanation
Indices: 44867586--44867682 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
44867576 ATTCTGTTAC
* * * *
44867586 CTGATA CTGATT CAGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
44867635 CTGATT CT-ATCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
44867683 AATGTTTCTT
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
5 5 0.07
6 59 0.81
7 6 0.08
8 3 0.04
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:44868396 original size:14 final size:14
Alignment explanation
Indices: 44868377--44868406 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
44868367 ATTCAACTAA
*
44868377 ACTAAAATGATTAT
1 ACTAAAATGATCAT
44868391 ACTAAAATGATCAT
1 ACTAAAATGATCAT
44868405 AC
1 AC
44868407 ATACTAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (14 bp):
ACTAAAATGATCAT
Found at i:44870543 original size:23 final size:23
Alignment explanation
Indices: 44870514--44870568 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
44870504 AACTTTTTCA
44870514 AAAATAAAAAC-AAAAATGAAAAT
1 AAAATAAAAACTAAAAAT-AAAAT
* **
44870537 AATATAATTACTAAAAATAAAAT
1 AAAATAAAAACTAAAAATAAAAT
44870560 AAAATAAAA
1 AAAATAAAA
44870569 GTAAAGAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (23 bp):
AAAATAAAAACTAAAAATAAAAT
Found at i:44884400 original size:23 final size:23
Alignment explanation
Indices: 44884374--44884419 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
44884364 CATGCATTAT
44884374 GAATTGGTTTAGGTACCTATGTA
1 GAATTGGTTTAGGTACCTATGTA
44884397 GAATTGGTTTAGGTACCTATGTA
1 GAATTGGTTTAGGTACCTATGTA
44884420 ATTGGGTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.39
Consensus pattern (23 bp):
GAATTGGTTTAGGTACCTATGTA
Found at i:44886712 original size:25 final size:25
Alignment explanation
Indices: 44886684--44886736 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
44886674 CTCTAGAAAG
44886684 AAAGGAAAACAAGCTAAGGAAGAGT
1 AAAGGAAAACAAGCTAAGGAAGAGT
44886709 AAAGGAAAACAAGCTAAGGAAGAGT
1 AAAGGAAAACAAGCTAAGGAAGAGT
44886734 AAA
1 AAA
44886737 AATGCTAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.58, C:0.08, G:0.26, T:0.08
Consensus pattern (25 bp):
AAAGGAAAACAAGCTAAGGAAGAGT
Found at i:44887113 original size:16 final size:17
Alignment explanation
Indices: 44887088--44887119 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
44887078 TAAAAAAAAA
44887088 TATTTGGTTGGTTAAAT
1 TATTTGGTTGGTTAAAT
44887105 TATTT-GTTGGTTAAA
1 TATTTGGTTGGTTAAA
44887120 AATCCAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (17 bp):
TATTTGGTTGGTTAAAT
Found at i:44895583 original size:25 final size:25
Alignment explanation
Indices: 44895529--44895611 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 25
44895519 CAGTTCTTAT
* *
44895529 GAGCTTATCGA-TACTCAGCTCGTATA
1 GAGCTTATC-ATTATTCAGCTCGGA-A
44895555 -AGCTTATCATTATTCAGCTCGGAA
1 GAGCTTATCATTATTCAGCTCGGAA
* * * *
44895579 GAGCTAACCGTTATTCAGCTCGGAG
1 GAGCTTATCATTATTCAGCTCGGAA
44895604 GAGCTTAT
1 GAGCTTAT
44895612 TGTTTATAGC
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
24 2 0.04
25 45 0.96
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (25 bp):
GAGCTTATCATTATTCAGCTCGGAA
Found at i:44896752 original size:19 final size:20
Alignment explanation
Indices: 44896717--44896754 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
44896707 AGGGACTAAA
*
44896717 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAGTTCTAAAATTTG
44896737 ATGAAAA-TTCTAAAATTT
1 ATGAAAAGTTCTAAAATTT
44896755 TAAGAATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.47, C:0.03, G:0.13, T:0.37
Consensus pattern (20 bp):
ATGAAAAGTTCTAAAATTTG
Found at i:44898674 original size:40 final size:40
Alignment explanation
Indices: 44898582--44898733 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
44898572 TACAACCACA
* * * ***
44898582 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACT
* * *
44898622 TGCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACT
* * *
44898662 CGCACGAATGCCTTC-GGTCTTAGCCCGGACATAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACT
* *
44898701 AGCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
44898734 CATTCAAATG
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 33 0.35
40 61 0.65
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACT
Found at i:44908358 original size:40 final size:39
Alignment explanation
Indices: 44908193--44908376 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
44908183 AAATTGAATG
* * *
44908193 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
44908233 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
44908273 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
44908313 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
44908352 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
44908377 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:44908401 original size:80 final size:81
Alignment explanation
Indices: 44908233--44908421 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
44908223 GCTGGAAATT
* * * *
44908233 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
44908298 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
44908314 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
44908377 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
44908393 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
44908422 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:44909914 original size:40 final size:40
Alignment explanation
Indices: 44909865--44910016 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
44909855 ACAACCACAA
* * *** *
44909865 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
44909905 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
44909945 GCACGAA-TGCCTTCGGGTCTTAGCCCGGACATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
44909985 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
44910017 CATTCAAATG
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:44912492 original size:71 final size:71
Alignment explanation
Indices: 44912406--44912569 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
44912396 CGATTTGTCT
44912406 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
44912471 CTTTCA
66 CTTTCA
44912477 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
44912542 CTTTCA
66 CTTTCA
44912548 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
44912570 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:44912607 original size:71 final size:70
Alignment explanation
Indices: 44912406--44912603 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
44912396 CGATTTGTCT
* * * *
44912406 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
44912471 CTTTCA
65 CTTTCA
* * * *
44912477 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
44912542 CTTTCA
65 CTTTCA
* *
44912548 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
44912604 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:44920071 original size:71 final size:71
Alignment explanation
Indices: 44919987--44920150 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
44919977 CGATTTGTCT
44919987 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
44920052 CTTTCA
66 CTTTCA
44920058 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
44920123 CTTTCA
66 CTTTCA
44920129 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
44920151 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:44920188 original size:71 final size:70
Alignment explanation
Indices: 44919987--44920184 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
44919977 CGATTTGTCT
* * * *
44919987 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
44920052 CTTTCA
65 CTTTCA
* * * *
44920058 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
44920123 CTTTCA
65 CTTTCA
* *
44920129 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
44920185 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:44933834 original size:41 final size:42
Alignment explanation
Indices: 44933777--44933884 Score: 105
Period size: 43 Copynumber: 2.6 Consensus size: 42
44933767 TCGATGCCTT
* * * *
44933777 TGTCCTAGACAGGGTCTTACACGAAAT-TAGAAT-GATA-CTG
1 TGTCCCAGACACGGTCTTACACGAAATAT-CAATCGAGACCTG
* * *
44933817 ATGTCCCAGGCATGGTCTTATACGTAAATATCAATCGAGACCTG
1 -TGTCCCAGACACGGTCTTACACG-AAATATCAATCGAGACCTG
44933861 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
44933885 TATCTCAGAT
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
41 19 0.35
42 8 0.15
43 24 0.44
44 3 0.06
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAATATCAATCGAGACCTG
Found at i:44946452 original size:27 final size:27
Alignment explanation
Indices: 44946422--44946722 Score: 383
Period size: 27 Copynumber: 11.1 Consensus size: 27
44946412 AAGTACTCCT
44946422 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
44946449 GATTTACAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
44946476 AATTTACAAAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
44946503 -AGTTTACAGAATTACTGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
* *
44946530 GATTTATAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
*
44946557 GATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
44946584 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* ** * *
44946611 AATTTGTAAAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
44946638 GATTTACAAAATTACTAG-TTTACCTTC
1 GATTTACAGAATTAC-CGTTTTACCCTC
* *
44946665 -AGTTTACAAAATTATCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
44946692 GATTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
44946719 GATT
1 GATT
44946723 GTGAAATTAC
Statistics
Matches: 240, Mismatches: 28, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.01
27 234 0.98
28 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:44946512 original size:81 final size:81
Alignment explanation
Indices: 44946424--44946722 Score: 431
Period size: 81 Copynumber: 3.7 Consensus size: 81
44946414 GTACTCCTGA
**
44946424 TTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTACAAAATT
1 TTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATT
44946489 ACTGTTTTACCCTCAG
66 ACTGTTTTACCCTCAG
* * * *
44946505 TTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATT
1 TTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATT
**
44946570 ACCATTTTACCCTC-G
66 ACTGTTTTACCCTCAG
* **
44946585 ATTTACAGAATTACCGTTTTACCCTCAATTTGTAAAATTACCGTTTTACCCTTGATTTACAAAAT
1 -TTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAAT
*
44946650 TACTAG-TTTACCTTCAG
65 TACT-GTTTTACCCTCAG
* * *
44946667 TTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATT
1 TTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATT
44946723 GTGAAATTAC
Statistics
Matches: 193, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
80 1 0.01
81 191 0.99
82 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (81 bp):
TTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATT
ACTGTTTTACCCTCAG
Found at i:44946757 original size:27 final size:27
Alignment explanation
Indices: 44946727--44946921 Score: 230
Period size: 27 Copynumber: 7.2 Consensus size: 27
44946717 TTGATTGTGA
44946727 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
44946754 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
44946781 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
44946808 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
44946835 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
44946862 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* ** * * *
44946889 AATTACCGTGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
44946916 AATTAC
1 AATTAC
44946922 CATTTTGCCC
Statistics
Matches: 144, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:44946795 original size:54 final size:54
Alignment explanation
Indices: 44946727--44946922 Score: 259
Period size: 54 Copynumber: 3.6 Consensus size: 54
44946717 TTGATTGTGA
* * * *
44946727 AATTACTGAAATACCCCTGTAGGGTAGAATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
44946781 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
44946835 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* ** * *
44946889 AATTACCGTGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
44946923 ATTTTGCCCC
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 122 0.99
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:44947167 original size:27 final size:27
Alignment explanation
Indices: 44947124--44947202 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
44947114 AGGAAGCGTC
*
44947124 CTGGTGGCTATGCCACAAATATCTGTA-
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
*
44947151 CTGGTGGCTCTGGCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* * *
44947178 TTGGTGACTCTGTCACAATATCTGT
1 CTGGTGGCTCTGCCACAATATCTGT
44947203 TGACCGATCG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 10 0.22
27 36 0.78
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:44947323 original size:22 final size:22
Alignment explanation
Indices: 44947291--44947349 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
44947281 CTCGTTATTA
*
44947291 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
44947313 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
44947335 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
44947350 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:44947772 original size:6 final size:6
Alignment explanation
Indices: 44947730--44947891 Score: 156
Period size: 6 Copynumber: 26.8 Consensus size: 6
44947720 CTGTCACATA
* * * *
44947730 ATTCTA ATTCTG ATTCTA ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* *
44947778 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
44947827 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
44947875 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
44947892 CATTTTGGTT
Statistics
Matches: 130, Mismatches: 13, Indels: 26
0.77 0.08 0.15
Matches are distributed among these distances:
5 10 0.08
6 110 0.85
7 8 0.06
8 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:44947804 original size:85 final size:85
Alignment explanation
Indices: 44947705--44947891 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
44947695 TTGCATTCAC
*
44947705 ATTCTGATTTTGATTCTGTCACATAATTCTAATTCTGATTCTAATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACATAATTCTAATTCTGATTCTAATTCTGTTACTAATACTGATTC
44947770 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* * * *
44947790 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACATAATTCTAATTCTGATTCTAATTCTGTTACTAATACTGATTC
44947855 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
44947875 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
44947892 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACATAATTCTAATTCTGATTCTAATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:44947909 original size:30 final size:30
Alignment explanation
Indices: 44947705--44947912 Score: 207
Period size: 30 Copynumber: 7.1 Consensus size: 30
44947695 TTGCATTCAC
* * * *
44947705 ATTCTGATTTTGATTCTGTCACATAATTCTA
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
* * *
44947736 ATTCTGATTCTAATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
44947766 ATTCTGATTCTGATTCTGTT----A--CTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
*
44947790 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
44947821 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
**
44947851 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
44947881 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
44947911 AT
1 AT
44947913 AATGTTTCTT
Statistics
Matches: 153, Mismatches: 14, Indels: 21
0.81 0.07 0.11
Matches are distributed among these distances:
24 22 0.14
26 1 0.01
29 2 0.01
30 81 0.53
31 47 0.31
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:44949898 original size:50 final size:50
Alignment explanation
Indices: 44949819--44950004 Score: 207
Period size: 50 Copynumber: 3.7 Consensus size: 50
44949809 ATTATGAATA
*
44949819 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTCAAGT
** * * *
44949869 CATATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-T
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-AT-ACTGTCAAGT
* * * * *
44949920 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGA-TGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT-GTCAAGT
*
44949970 CACGTGTGTAGTACTAAATGCAGGCTACTACGTGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGT
44950005 GACACCCCTA
Statistics
Matches: 112, Mismatches: 18, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 2 0.02
50 68 0.61
51 33 0.29
52 4 0.04
53 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTCAAGT
Found at i:44951845 original size:28 final size:28
Alignment explanation
Indices: 44951776--44951876 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
44951766 GACAAGATTG
* * * *
44951776 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
44951806 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
44951834 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
44951863 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
44951877 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:44951870 original size:29 final size:28
Alignment explanation
Indices: 44951805--44951876 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
44951795 AAAATTGTAC
*
44951805 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
44951833 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
44951862 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
44951877 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:44958055 original size:30 final size:30
Alignment explanation
Indices: 44958019--44958178 Score: 195
Period size: 29 Copynumber: 5.5 Consensus size: 30
44958009 GACAAGATTG
* * * * *
44958019 GCACTAAGTGTGTGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATACA
*
44958049 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATACA
*
44958077 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACA
*
44958106 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACA
*
44958136 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACA
44958165 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
44958179 GATTCACTAT
Statistics
Matches: 119, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 44 0.37
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACA
Found at i:44958145 original size:59 final size:57
Alignment explanation
Indices: 44958048--44958178 Score: 210
Period size: 59 Copynumber: 2.3 Consensus size: 57
44958038 AAAATTGTAC
*
44958048 AGCACTAAGTGTGCGAGTTTGATTATACAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTGATTATACAGCACTAAGTGTGCGAGCTGAAAATATAT
*
44958105 AGCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG---ATTATACAGCACTAAGTGTGCGAGCTGAAAATATAT
44958164 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
44958179 GATTCACTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
56 2 0.03
57 17 0.25
59 50 0.72
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAGTCTGATTATACAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:44958190 original size:29 final size:29
Alignment explanation
Indices: 44958048--44958178 Score: 203
Period size: 29 Copynumber: 4.5 Consensus size: 29
44958038 AAAATTGTAC
* * *
44958048 AGCACTAAGTGTGCGAGTTTG--ATTATAC
1 AGCACTAAGTGTGCGAG-CTGAAAATATAT
44958076 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
44958105 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
44958135 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
44958164 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
44958179 GATTCACTAT
Statistics
Matches: 97, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
27 2 0.02
28 17 0.18
29 49 0.51
30 29 0.30
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:44963705 original size:30 final size:30
Alignment explanation
Indices: 44963669--44963828 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
44963659 GACAAGATTG
* * * * *
44963669 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
44963699 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
44963727 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
44963756 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
44963786 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
44963815 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
44963829 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:44963797 original size:59 final size:57
Alignment explanation
Indices: 44963669--44963828 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
44963659 GACAAGATTG
* * * * * *
44963669 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
44963727 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
44963786 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
44963829 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:44968808 original size:28 final size:28
Alignment explanation
Indices: 44968739--44968839 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
44968729 GACAAGATTG
* * * *
44968739 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
44968769 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
44968797 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
44968826 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
44968840 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:44968833 original size:29 final size:28
Alignment explanation
Indices: 44968768--44968839 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
44968758 AAAATTGTAC
*
44968768 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
44968796 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
44968825 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
44968840 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:44970416 original size:27 final size:26
Alignment explanation
Indices: 44970386--44970437 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
44970376 GGGAAAATCG
44970386 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
* *
44970413 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
44970438 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:44976012 original size:27 final size:27
Alignment explanation
Indices: 44975952--44976031 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
44975942 CAAAATCATT
*
44975952 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
44975979 GAAATACCCTTGTAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
44976006 -AAGATACCCTTGTGGGGTTA-AATTAC
1 GAA-ATACCCTTGTAGGG-TAGAATTAC
44976032 TATTTTGCCC
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
26 2 0.04
27 43 0.91
28 2 0.04
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:44976492 original size:25 final size:25
Alignment explanation
Indices: 44976461--44976530 Score: 70
Period size: 27 Copynumber: 2.7 Consensus size: 25
44976451 GATGACTTTG
*
44976461 TGCCACATATTCTGTTAAGTGGCTT
1 TGCCACATATTCTGTTAAGTGGCTC
**
44976486 TGCCACAT-TATCTGATTCTGGTGGCTC
1 TGCCACATAT-TCTG-TT-AAGTGGCTC
44976513 TGCCACAATATTCTGTTA
1 TGCCAC-ATATTCTGTTA
44976531 TTAGCAGCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
24 1 0.03
25 12 0.33
26 2 0.06
27 14 0.39
28 6 0.17
29 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.39
Consensus pattern (25 bp):
TGCCACATATTCTGTTAAGTGGCTC
Found at i:44976708 original size:25 final size:25
Alignment explanation
Indices: 44976647--44976711 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
44976637 TTGCATTCAC
* *
44976647 ATTCTGATTCTGATTATGTTACCTA
1 ATTCTGATTCTTATTATGTCACCTA
* *
44976672 ATACTGATTCTTATTCTGTCACCTA
1 ATTCTGATTCTTATTATGTCACCTA
44976697 ATTCTGATTCTTATT
1 ATTCTGATTCTTATT
44976712 TTGATTCTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.23, C:0.18, G:0.09, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTTATTATGTCACCTA
Found at i:44976718 original size:12 final size:12
Alignment explanation
Indices: 44976701--44976731 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
44976691 CACCTAATTC
*
44976701 TGATTCTTATTT
1 TGATTCTCATTT
44976713 TGATTCTCATTT
1 TGATTCTCATTT
44976725 TGATTCT
1 TGATTCT
44976732 AGTTCTGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.13, G:0.10, T:0.61
Consensus pattern (12 bp):
TGATTCTCATTT
Found at i:44978830 original size:27 final size:27
Alignment explanation
Indices: 44978807--44978994 Score: 261
Period size: 27 Copynumber: 7.0 Consensus size: 27
44978797 CAAAATTATT
*
44978807 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
44978834 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
44978861 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
44978888 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
44978915 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
44978942 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
44978969 -AAGATACCCTTCTGGGGTAAAATTAC
1 GAA-ATACCCTTGTAGGGTAGAATTAC
44978995 TATTTTGCCT
Statistics
Matches: 142, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 2 0.01
27 140 0.99
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:44979398 original size:20 final size:20
Alignment explanation
Indices: 44979358--44979398 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
44979348 TGTGTGTCGT
* *
44979358 TATTGTGGGCTTCGTATCGA
1 TATTATGGGCTTCGTACCGA
*
44979378 TATTATGGGCTTCGTGCCGA
1 TATTATGGGCTTCGTACCGA
44979398 T
1 T
44979399 TATAGACCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.17, G:0.29, T:0.39
Consensus pattern (20 bp):
TATTATGGGCTTCGTACCGA
Found at i:44979652 original size:25 final size:25
Alignment explanation
Indices: 44979615--44979718 Score: 96
Period size: 25 Copynumber: 4.4 Consensus size: 25
44979605 TCACATTCTA
* * *
44979615 ATTCTGATCCTGTTACCTGATACTG
1 ATTCTGATTCTGTCACCTAATACTG
* *
44979640 ATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGTCACCTAATACTG
44979665 ATTCTGATTCTG--A-CT--T--TG
1 ATTCTGATTCTGTCACCTAATACTG
* *
44979683 ATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGTCACCTAATACTG
44979708 ATTCTGATTCT
1 ATTCTGATTCT
44979719 CATTTTGATT
Statistics
Matches: 66, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
18 14 0.21
20 2 0.03
21 2 0.03
22 2 0.03
23 2 0.03
25 44 0.67
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.45
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTAATACTG
Found at i:44979668 original size:6 final size:6
Alignment explanation
Indices: 44979659--44979739 Score: 78
Period size: 6 Copynumber: 13.3 Consensus size: 6
44979649 CTGTCACCTA
*
44979659 ATTCTG ATTCTG ATTCTG ACTT-TG ATTCTG ATTCTG -TCACCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
44979708 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
44979740 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
5 4 0.06
6 51 0.82
7 6 0.10
8 1 0.02
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:44979668 original size:19 final size:19
Alignment explanation
Indices: 44979637--44979713 Score: 82
Period size: 19 Copynumber: 3.8 Consensus size: 19
44979627 TTACCTGATA
*
44979637 CTGATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
*
44979656 CTAATTCTGATTCTGATTCTGAC
1 CTGATTCTGATTCTG--TC--AC
*
44979679 TTTGATTCTGATTCTGTCAC
1 -CTGATTCTGATTCTGTCAC
44979699 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
44979714 ATTCTCATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
19 27 0.56
20 2 0.04
21 2 0.04
22 2 0.04
23 2 0.04
24 13 0.27
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.45
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:44979693 original size:43 final size:43
Alignment explanation
Indices: 44979638--44979737 Score: 155
Period size: 43 Copynumber: 2.3 Consensus size: 43
44979628 TACCTGATAC
*
44979638 TGATTCTAATTCTGTCACCTAATTCTGATTCTGATTCTGACTT
1 TGATTCTAATTCTGTCACCTAATTCTGATTCTGATTCTCACTT
* * *
44979681 TGATTCTGATTCTGTCACCTGATTCTGATTCTGATTCTCATTT
1 TGATTCTAATTCTGTCACCTAATTCTGATTCTGATTCTCACTT
*
44979724 TGATTCTAGTTCTG
1 TGATTCTAATTCTG
44979738 ATAATGTTTC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (43 bp):
TGATTCTAATTCTGTCACCTAATTCTGATTCTGATTCTCACTT
Found at i:44984173 original size:45 final size:46
Alignment explanation
Indices: 44984050--44984173 Score: 139
Period size: 45 Copynumber: 2.7 Consensus size: 46
44984040 ACTAGGAATG
* *
44984050 TAGAAATCCGAGCTCGTTGAGTTGGTCCGAG-TCTGTGATATATGT
1 TAGAAATCTGAGCTCGTTGAGTTGGTCAGAGTTCTGTGATATATGT
* * *
44984095 TAGAAATCTGAACTTGTTGAGTTGGTCAAAGTTC-GTGATATATG-
1 TAGAAATCTGAGCTCGTTGAGTTGGTCAGAGTTCTGTGATATATGT
* *
44984139 T-GAAGCATCTGAGCTCATTGAGTTGGTCTGAGTTC
1 TAGAA--ATCTGAGCTCGTTGAGTTGGTCAGAGTTC
44984174 ATTATGGATG
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
43 3 0.05
44 1 0.02
45 60 0.91
46 2 0.03
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (46 bp):
TAGAAATCTGAGCTCGTTGAGTTGGTCAGAGTTCTGTGATATATGT
Found at i:44986980 original size:15 final size:15
Alignment explanation
Indices: 44986936--44987000 Score: 69
Period size: 15 Copynumber: 4.3 Consensus size: 15
44986926 TATGATATTA
* *
44986936 TATCTTGGATTTGTG
1 TATCTTGGATTTCTT
*
44986951 TATCTCGGATTTCTT
1 TATCTTGGATTTCTT
44986966 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* *
44986981 TGT-TCTGGACTTCTT
1 TATCT-TGGATTTCTT
44986996 TATCT
1 TATCT
44987001 CGGTTTTCAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
14 1 0.02
15 39 0.95
16 1 0.02
ACGTcount: A:0.12, C:0.15, G:0.17, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:44986995 original size:30 final size:30
Alignment explanation
Indices: 44986936--44987000 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
44986926 TATGATATTA
*
44986936 TATCTTGGATTTGTGTATCTCGGATTTCTT
1 TATCTTGGATTTGTGTATCTCGGACTTCTT
*
44986966 TATCTTGGATTTCTTTGT-TCT-GGACTTCTT
1 TATCTTGGA-TT-TGTGTATCTCGGACTTCTT
44986996 TATCT
1 TATCT
44987001 CGGTTTTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 22 0.71
31 5 0.16
32 4 0.13
ACGTcount: A:0.12, C:0.15, G:0.17, T:0.55
Consensus pattern (30 bp):
TATCTTGGATTTGTGTATCTCGGACTTCTT
Found at i:44991460 original size:6 final size:6
Alignment explanation
Indices: 44991437--44991471 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
44991427 AAACAATAAT
* *
44991437 CAGTAA CGGTAG CAGTAA CAGTAA CAGTAA CAGTA
1 CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
44991472 TTCAACACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (6 bp):
CAGTAA
Found at i:44991501 original size:45 final size:45
Alignment explanation
Indices: 44991451--44991561 Score: 161
Period size: 45 Copynumber: 2.5 Consensus size: 45
44991441 AACGGTAGCA
* *
44991451 GTAACAGTAACAGTAACAGTATTCAACACATAAAGTG-CTGAATCT
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTC-GAATCG
* *
44991496 GTAACAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATCG
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCG
*
44991541 GTAATAGTAACAGTAACAGTA
1 GTAACAGTAACAGTAACAGTA
44991562 ATAGTAATAG
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 58 0.98
46 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.23
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATCG
Found at i:44991555 original size:6 final size:6
Alignment explanation
Indices: 44991541--44991594 Score: 81
Period size: 6 Copynumber: 9.0 Consensus size: 6
44991531 TGTCGAATCG
* * *
44991541 GTAATA GTAACA GTAACA GTAATA GTAATA GTAACA GTAACA GTAACA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA
44991589 GTAACA
1 GTAACA
44991595 TAAGTGCCTG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.22
Consensus pattern (6 bp):
GTAACA
Found at i:44991564 original size:18 final size:18
Alignment explanation
Indices: 44991541--44991594 Score: 90
Period size: 18 Copynumber: 3.0 Consensus size: 18
44991531 TGTCGAATCG
44991541 GTAATAGTAACAGTAACA
1 GTAATAGTAACAGTAACA
*
44991559 GTAATAGTAATAGTAACA
1 GTAATAGTAACAGTAACA
*
44991577 GTAACAGTAACAGTAACA
1 GTAATAGTAACAGTAACA
44991595 TAAGTGCCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.22
Consensus pattern (18 bp):
GTAATAGTAACAGTAACA
Found at i:44991850 original size:21 final size:21
Alignment explanation
Indices: 44991785--44991852 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
44991775 AATTCATTAC
* *
44991785 TTCAGTAAATTCACAGTTCAA
1 TTCAGTAACTTCACAATTCAA
* * *
44991806 TGCAGTACACATAACAA-T--A
1 TTCAGTA-ACTTCACAATTCAA
44991825 TTCAGTAACTTCACAATTCAA
1 TTCAGTAACTTCACAATTCAA
44991846 TTCAGTA
1 TTCAGTA
44991853 TCAGTCTCGA
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
21 15 0.43
22 5 0.14
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (21 bp):
TTCAGTAACTTCACAATTCAA
Found at i:44992817 original size:26 final size:24
Alignment explanation
Indices: 44992799--44992856 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
44992789 ATTTATTAAT
*
44992799 TTACATTTGTATTCATATTCATTA
1 TTACACTTGTATTCATATTCATTA
*
44992823 TTACACTTGTATTTA-ATT-ATTA
1 TTACACTTGTATTCATATTCATTA
44992845 CCTTACACTTGT
1 --TTACACTTGT
44992857 CACTCCTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 4 0.13
23 3 0.10
24 23 0.77
ACGTcount: A:0.28, C:0.16, G:0.05, T:0.52
Consensus pattern (24 bp):
TTACACTTGTATTCATATTCATTA
Found at i:45014919 original size:30 final size:30
Alignment explanation
Indices: 45014874--45014933 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
45014864 ATTTAATACG
*
45014874 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
45014904 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
45014934 GGCTGGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:45017336 original size:6 final size:6
Alignment explanation
Indices: 45017318--45017369 Score: 77
Period size: 6 Copynumber: 8.7 Consensus size: 6
45017308 AACAATAATG
* * *
45017318 AGTAAC GGTAGC AGTAGC AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC
1 AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC
45017366 AGTA
1 AGTA
45017370 TTCAACACAC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.17
Consensus pattern (6 bp):
AGTAAC
Found at i:45017399 original size:45 final size:45
Alignment explanation
Indices: 45017349--45017453 Score: 131
Period size: 45 Copynumber: 2.3 Consensus size: 45
45017339 AACAGTAACA
* * *
45017349 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTG-CTGAATCT
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAATGTC-AAATCG
* * **
45017394 GTAACAGTAACGGTAATAGTATTTGACACACAAAATGTCAAATCG
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAATGTCAAATCG
45017439 GTAACAGTAACAGTA
1 GTAACAGTAACAGTA
45017454 GTCGGCACAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 50 0.98
46 1 0.02
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAATGTCAAATCG
Found at i:45018317 original size:30 final size:30
Alignment explanation
Indices: 45018281--45018338 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
45018271 CCGAGCCTAG
*
45018281 GGGCAAAAGTGTAATTATGCAAAAGTTTAA
1 GGGCAAAAATGTAATTATGCAAAAGTTTAA
* *
45018311 GGGCAAAAATGTAATTTTGCCAAAGTTT
1 GGGCAAAAATGTAATTATGCAAAAGTTT
45018339 GTTTTAAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGCAAAAGTTTAA
Found at i:45028187 original size:31 final size:30
Alignment explanation
Indices: 45028150--45028207 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
45028140 AACACAACAC
*
45028150 AATTTAATTTCTGAAATTTTAT-CTAACTTTT
1 AATTTAATTTC--AAATTTAATCCTAACTTTT
45028181 AATTTAATTTCAAATTTAATCCTAACT
1 AATTTAATTTCAAATTTAATCCTAACT
45028208 AAACCTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 8 0.32
30 6 0.24
31 11 0.44
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (30 bp):
AATTTAATTTCAAATTTAATCCTAACTTTT
Found at i:45028820 original size:3 final size:3
Alignment explanation
Indices: 45028812--45028846 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
45028802 TATTTAACAT
45028812 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
45028847 TCTTTTACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:45031060 original size:40 final size:40
Alignment explanation
Indices: 45030973--45031158 Score: 193
Period size: 40 Copynumber: 4.7 Consensus size: 40
45030963 TCGAATGATG
* * * *
45030973 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
45031013 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45031053 TCCGGACTAAGAT-TCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
45031093 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
45031134 -CCGGGC-AATGTCCCGAAGGTATTTG
1 TCCGGACTAA-GTCCCGAAGGCATTTG
45031159 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 3 0.02
40 115 0.90
41 10 0.08
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45031165 original size:80 final size:79
Alignment explanation
Indices: 45031026--45031181 Score: 176
Period size: 80 Copynumber: 2.0 Consensus size: 79
45031016 GGACTAAGAT
* * **
45031026 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATTCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
45031090 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* *
45031106 CCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGC-AATG-TCCCGAAGGTATTTGAACGAGTAG
1 CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAA-GAT-CCGAAGGCATTTGAACGAGTAG
*
45031168 CTATATCCGGTTAA
63 CTAAATCCGGTTAA
45031182 ACTCCGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
79 11 0.17
80 52 0.80
81 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:45034466 original size:51 final size:51
Alignment explanation
Indices: 45034338--45034677 Score: 271
Period size: 51 Copynumber: 6.7 Consensus size: 51
45034328 TGGTTTTAGG
* ** * * * *
45034338 TCACGTTTGTAGTACTAAGTGCAGGCTACTACATGTACCAGA-TAGTT-AGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGACAACTTCA-A
* * * **
45034388 TCGCATGTGTAGTACTAAGTGCAAAGCTACTATGTGTACTTGACAACTTCAA
1 TCACGTGTGTAGTACTAAGTGC-AGGCTACTATGTGTACCCGACAACTTCAA
* * * * *** *
45034440 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGA-TGGTT-AGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGACAACTTCA-A
* * *
45034490 TCAC-TATGTAGTACTAAGTGCAGGCTAGTATGTGTACCCGGCAACTTCAA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGACAACTTCAA
*
45034540 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCAA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGACAACTTCAA
* * * ** * * *** *
45034591 TCACATGTTTAGTACTAAGTGTAGGCTACTACCTGTATCAGA-TGGTT-AGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGACAACTTCA-A
*
45034641 TCATGTGTGTAGTACTAAGTGCAGGCTACTATGTGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTA
45034678 TCGTATTTTT
Statistics
Matches: 228, Mismatches: 54, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
49 32 0.14
50 64 0.28
51 108 0.47
52 23 0.10
53 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGACAACTTCAA
Found at i:45034558 original size:100 final size:102
Alignment explanation
Indices: 45034338--45034570 Score: 344
Period size: 100 Copynumber: 2.3 Consensus size: 102
45034328 TGGTTTTAGG
* * *
45034338 TCACGTTTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCACATATGTAGTAC
**
45034403 TAAGTGCAAAGCTACTATGTGTACTTGACAACTTCAA
66 TAAGTGCAAAGCTACTATGTGTACCCGACAACTTCAA
* * * *
45034440 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCAC-TATGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCACATATGTAGTAC
* * *
45034504 TAAGTGC-AGGCTAGTATGTGTACCCGGCAACTTCAA
66 TAAGTGCAAAGCTACTATGTGTACCCGACAACTTCAA
45034540 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
45034571 TGCGTACCCG
Statistics
Matches: 118, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
100 54 0.46
101 16 0.14
102 48 0.41
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (102 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCACATATGTAGTAC
TAAGTGCAAAGCTACTATGTGTACCCGACAACTTCAA
Found at i:45034568 original size:151 final size:151
Alignment explanation
Indices: 45034287--45034728 Score: 491
Period size: 151 Copynumber: 2.9 Consensus size: 151
45034277 ATTGTGAGAA
* * * * * *
45034287 CACATGTGTAGTACTATGTGCAGGGTACTATGTGTTTAAGATGGTTTTAGGTCACGTTTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCAC-TATGTAGTA
** * * *
45034352 CTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAAAGCTA
63 CTAAGTGCAGGCTACTATGTGTACCAGATACTTAGATCACATGTGTAGTACTAAGTGCAAAGCTA
* **
45034417 CTATGTGTACTTGACAACTTCAAT
128 CTATGCGTACCCGACAACTTCAAT
* *
45034441 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACTATGTAGTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACTATGTAGTACTA
* * * *
45034506 AGTGCAGGCTAGTATGTGTACCCGGCA-ACTTCA-ATCACGTGTGTAGTACTAAGTGC-AGGCTA
66 AGTGCAGGCTACTATGTGTA-CCAG-ATACTT-AGATCACATGTGTAGTACTAAGTGCAAAGCTA
45034568 CTATGCGTACCCGACAACTTCAAT
128 CTATGCGTACCCGACAACTTCAAT
* * * * *
45034592 CACATGTTTAGTACTAAGTGTAGGCTACTACCTGTATCAGATGGTTAGGTCATGTGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA-CTATGTAGTACT
* * * * *
45034657 AAGTGCAGGCTACTATGTGTATC-G-TATTTTTGGTCGCATGTGTAGTACTAAGTGC-AAGCTAC
65 AAGTGCAGGCTACTATGTGTACCAGATA-CTTAGATCACATGTGTAGTACTAAGTGCAAAGCTAC
*
45034719 TATGAGTACC
129 TATGCGTACC
45034729 AGATAGCTTC
Statistics
Matches: 245, Mismatches: 36, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
149 1 0.00
150 38 0.16
151 102 0.42
152 65 0.27
153 2 0.01
154 37 0.15
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (151 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACTATGTAGTACTA
AGTGCAGGCTACTATGTGTACCAGATACTTAGATCACATGTGTAGTACTAAGTGCAAAGCTACTA
TGCGTACCCGACAACTTCAAT
Found at i:45042210 original size:40 final size:40
Alignment explanation
Indices: 45042165--45042294 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
45042155 CGGAATATAA
45042165 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
45042205 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
45042245 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
45042285 CCGGATATAA
1 CCGGATATAA
45042295 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:45042309 original size:40 final size:39
Alignment explanation
Indices: 45042181--45042331 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
45042171 ATAACCATGT
* * *
45042181 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
45042221 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
45042261 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
45042300 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
45042332 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:45042315 original size:80 final size:79
Alignment explanation
Indices: 45042165--45042331 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
45042155 CGGAATATAA
*
45042165 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
45042230 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
45042245 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
45042307 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
45042324 CCGGATAT
1 CCGGATAT
45042332 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:45050232 original size:40 final size:40
Alignment explanation
Indices: 45050187--45050316 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
45050177 CGGAATATAA
45050187 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
45050227 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
45050267 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
45050307 CCGGATATAA
1 CCGGATATAA
45050317 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:45050331 original size:40 final size:39
Alignment explanation
Indices: 45050203--45050353 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
45050193 ATAACCATGT
* * *
45050203 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
45050243 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
45050283 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
45050322 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
45050354 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:45050337 original size:80 final size:79
Alignment explanation
Indices: 45050187--45050353 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
45050177 CGGAATATAA
*
45050187 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
45050252 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
45050267 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
45050329 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
45050346 CCGGATAT
1 CCGGATAT
45050354 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:45055689 original size:79 final size:81
Alignment explanation
Indices: 45055588--45055772 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
45055578 ACGACTCGCT
** * *
45055588 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
45055651 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
45055668 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
45055732 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
45055748 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45055773 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:45055772 original size:40 final size:39
Alignment explanation
Indices: 45055581--45055772 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
45055571 GGATATAACG
* ** * *
45055581 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
45055621 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
45055661 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
45055700 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
45055740 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
45055773 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:45063729 original size:79 final size:82
Alignment explanation
Indices: 45063613--45063797 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
45063603 ACGACTCGCT
** * *
45063613 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
45063676 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
45063693 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
45063756 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
45063773 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45063798 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:45063797 original size:40 final size:39
Alignment explanation
Indices: 45063606--45063797 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
45063596 GGATATAACG
* ** * *
45063606 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
45063646 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
45063686 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
45063725 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
45063765 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
45063798 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:45071714 original size:25 final size:25
Alignment explanation
Indices: 45071695--45071778 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 25
45071685 TAGCTTTTAT
* * * *
45071695 GAGCTTACCGATACTCAGCTCATAT
1 GAGCTTACCGTTATTCAGCTCGTAG
* * *
45071720 GAGCTTATCGTTATTCAGCTTGGAG
1 GAGCTTACCGTTATTCAGCTCGTAG
45071745 GAGCTTACCGTTATTCAGCTCGTAG
1 GAGCTTACCGTTATTCAGCTCGTAG
45071770 GAGCTTACC
1 GAGCTTACC
45071779 ATTTACAACT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAGCTCGTAG
Found at i:45071797 original size:24 final size:25
Alignment explanation
Indices: 45071743--45071797 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
45071733 TTCAGCTTGG
* * *
45071743 AGGAGCTTACCGTTATTCAGCTCGT
1 AGGAGCTTACCATTATACAACTCGT
45071768 AGGAGCTTACCATT-TACAACTCGT
1 AGGAGCTTACCATTATACAACTCGT
*
45071792 ATGAGC
1 AGGAGC
45071798 ATACATGTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (25 bp):
AGGAGCTTACCATTATACAACTCGT
Found at i:45075595 original size:23 final size:22
Alignment explanation
Indices: 45075539--45075598 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
45075529 GAAGATCTGG
45075539 ATTAAAAGTAA-TAATATTTAAA
1 ATTAAAA-TAATTAATATTTAAA
* * *
45075561 ATTGAAACTAATTTATATTTCACA
1 ATT-AAAATAATTAATATTT-AAA
45075585 ATTAAAATAATTAA
1 ATTAAAATAATTAA
45075599 CCATGGCTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
22 6 0.20
23 19 0.63
24 5 0.17
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.38
Consensus pattern (22 bp):
ATTAAAATAATTAATATTTAAA
Found at i:45082835 original size:25 final size:23
Alignment explanation
Indices: 45082801--45082867 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 23
45082791 TCTAAAAAAT
* *
45082801 TTAATTAAATAAAAATTATTAATGA
1 TTAAATAAATAAAAATTA--AATAA
*
45082826 TTCAATAAATTGAAAAATTAAATAA
1 TTAAATAAA-T-AAAAATTAAATAA
*
45082851 TTAAATAAATTAAAATT
1 TTAAATAAATAAAAATT
45082868 TAGGAGAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 6 0.17
24 1 0.03
25 19 0.54
26 1 0.03
27 8 0.23
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.37
Consensus pattern (23 bp):
TTAAATAAATAAAAATTAAATAA
Found at i:45083491 original size:17 final size:18
Alignment explanation
Indices: 45083464--45083497 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
45083454 AATCAAATAT
45083464 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
45083482 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
45083498 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:45083841 original size:29 final size:30
Alignment explanation
Indices: 45083786--45083842 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
45083776 TTTGAAAATG
* * *
45083786 TTTACAAAAAGAGGCATCTAATTTTTATTA
1 TTTACAAAAAGAGGCAACCAAATTTTATTA
45083816 TTTACAAAAAGA-GCAACCAAATTTTAT
1 TTTACAAAAAGAGGCAACCAAATTTTAT
45083843 AAATAATTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (30 bp):
TTTACAAAAAGAGGCAACCAAATTTTATTA
Found at i:45092271 original size:40 final size:40
Alignment explanation
Indices: 45092218--45092369 Score: 182
Period size: 40 Copynumber: 3.8 Consensus size: 40
45092208 ATAACCACAA
* * *** *
45092218 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
45092258 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
45092298 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
45092338 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
45092370 CATTCAAATG
Statistics
Matches: 100, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
39 2 0.02
40 95 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:45100344 original size:24 final size:24
Alignment explanation
Indices: 45100317--45100379 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
45100307 CTTATTATGT
45100317 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
45100341 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
45100365 TCGCACACATAGTGC
1 TCGCACACATAGTGC
45100380 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:45103409 original size:40 final size:40
Alignment explanation
Indices: 45103349--45103516 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
45103339 CGGGATTTAA
* ** *
45103349 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** * *
45103389 CCGGATTTGGTAACTTGCACAATTGCCTTCAGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
45103429 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
45103469 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
*
45103509 CTGGATAT
1 CCGGATAT
45103517 CATTCAAATG
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 2 0.02
40 101 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:45103496 original size:80 final size:80
Alignment explanation
Indices: 45103349--45103516 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 80
45103339 CGGGATTTAA
* * ** * *
45103349 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
45103414 CCTTCAGGTCTTAGC
66 CCTTCAGGACTTAGC
** * * *
45103429 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
*
45103493 GCCTTCGGGACTTAGC
65 GCCTTCAGGACTTAGC
*
45103509 CTGGATAT
1 CCGGATAT
45103517 CATTCAAATG
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 71 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCAGGACTTAGC
Found at i:45114084 original size:19 final size:19
Alignment explanation
Indices: 45114062--45114099 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
45114052 ATTAAATAAG
45114062 TTAATTTTGATTATATTTA
1 TTAATTTTGATTATATTTA
45114081 TTAATTTTGATTATATTTA
1 TTAATTTTGATTATATTTA
45114100 GATCAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
TTAATTTTGATTATATTTA
Found at i:45120953 original size:23 final size:24
Alignment explanation
Indices: 45120909--45120953 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
45120899 CTTCCTATGT
45120909 GGAGAAATAAAGAAGGTGAGAGAA
1 GGAGAAATAAAGAAGGTGAGAGAA
*
45120933 GGAGAAATAAAG-TGGTGAGAG
1 GGAGAAATAAAGAAGGTGAGAG
45120954 GGTAAGGGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.49, C:0.00, G:0.40, T:0.11
Consensus pattern (24 bp):
GGAGAAATAAAGAAGGTGAGAGAA
Found at i:45125444 original size:40 final size:40
Alignment explanation
Indices: 45125399--45125566 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
45125389 CGGAATACAA
45125399 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
45125439 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
45125479 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
45125519 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
45125559 CCGGATAT
1 CCGGATAT
45125567 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:45125539 original size:80 final size:80
Alignment explanation
Indices: 45125399--45125566 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
45125389 CGGAATACAA
* *
45125399 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
45125464 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
45125479 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
45125542 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
45125559 CCGGATAT
1 CCGGATAT
45125567 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:45133412 original size:40 final size:40
Alignment explanation
Indices: 45133367--45133534 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
45133357 CGGAATACAA
45133367 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
45133407 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
45133447 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
45133487 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
45133527 CCGGATAT
1 CCGGATAT
45133535 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:45133507 original size:80 final size:80
Alignment explanation
Indices: 45133367--45133534 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
45133357 CGGAATACAA
* *
45133367 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
45133432 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
45133447 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
45133510 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
45133527 CCGGATAT
1 CCGGATAT
45133535 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:45144207 original size:22 final size:23
Alignment explanation
Indices: 45144182--45144225 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
45144172 TGATTTGTTG
45144182 TAATATAATT-TATTTGT-TTTAC
1 TAAT-TAATTCTATTTGTGTTTAC
45144204 TAATTAATTCTATTTGTGTTTA
1 TAATTAATTCTATTTGTGTTTA
45144226 GGTTAACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.59
Consensus pattern (23 bp):
TAATTAATTCTATTTGTGTTTAC
Found at i:45151215 original size:20 final size:20
Alignment explanation
Indices: 45151179--45151216 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
45151169 AGTTTTCTTA
*
45151179 AAGCAAGTTTTTGGCTTTTT
1 AAGCAAGTTTATGGCTTTTT
45151199 AAGCAAGCTTTAT-GCTTT
1 AAGCAAG-TTTATGGCTTT
45151217 CTTTGGCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (20 bp):
AAGCAAGTTTATGGCTTTTT
Found at i:45166855 original size:30 final size:30
Alignment explanation
Indices: 45166800--45166858 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
45166790 ACACGGGCGT
* * *
45166800 GACACATGGTCATGTTTCTCAGCTGTGTGC
1 GACACACGGTCATGTTACACAGCTGTGTGC
*
45166830 GACACACGGTCATGTTACACGGCTGTGTG
1 GACACACGGTCATGTTACACAGCTGTGTG
45166859 TCCCTTGGCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.29
Consensus pattern (30 bp):
GACACACGGTCATGTTACACAGCTGTGTGC
Found at i:45167314 original size:23 final size:22
Alignment explanation
Indices: 45167275--45167323 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
45167265 GCGATTCATA
* *
45167275 TGAATGTATTTTGATTATGATTG
1 TGAATGAATTTTGATTAAG-TTG
45167298 TGAATGAATGTTT-ATTAAGTTG
1 TGAATGAAT-TTTGATTAAGTTG
45167320 TGAA
1 TGAA
45167324 ATGTTAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 7 0.30
23 13 0.57
24 3 0.13
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (22 bp):
TGAATGAATTTTGATTAAGTTG
Found at i:45195332 original size:45 final size:45
Alignment explanation
Indices: 45195268--45195437 Score: 208
Period size: 45 Copynumber: 3.9 Consensus size: 45
45195258 TGTGCAGTAC
45195268 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAA
*
45195313 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAA
* * *
45195358 TATTCGGGCC-TCGAGCCTAGTAGG-TGA-AATGCCGGTGA-ATGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCT-ATAATGCCGGTGAGATAA
** * * *
45195400 -ATTCGGGTTTTTAAACCTAGCAGGCT-GAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
45195438 TTTGATAAAA
Statistics
Matches: 110, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
41 7 0.06
42 23 0.21
43 13 0.12
44 13 0.12
45 54 0.49
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAA
Found at i:45203734 original size:45 final size:44
Alignment explanation
Indices: 45203681--45203842 Score: 236
Period size: 45 Copynumber: 3.7 Consensus size: 44
45203671 ATTCGGTCCG
*
45203681 TTGAGCCTAGCAGGCTATAATGCCGATGAGATATTATTCGGGCAT
1 TTGAGCCTAGCAGGCTATAATGCCGGTGAGATATTATTCGGGC-T
* *
45203726 TTAAGCCTAGCAGGCTATAATGCCGGTGAGATAATATTCGGGCCT
1 TTGAGCCTAGCAGGCTATAATGCCGGTGAGATATTATTCGGG-CT
* *
45203771 TTGAGCCTAGCAGGCTATAATACCGGTGAGATATTATTCGGGCC
1 TTGAGCCTAGCAGGCTATAATGCCGGTGAGATATTATTCGGGCT
* *
45203815 TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TTGAGCCTAGCAGGCTATAATGCCGGTGA
45203843 ATGAATTCGG
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
43 10 0.09
44 16 0.15
45 79 0.75
46 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (44 bp):
TTGAGCCTAGCAGGCTATAATGCCGGTGAGATATTATTCGGGCT
Found at i:45216387 original size:40 final size:40
Alignment explanation
Indices: 45216317--45216494 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
45216307 AAGCCAAGTA
* * * *
45216317 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACCAATG
* *
45216356 CCTTTGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
*
45216396 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
* * * *
45216436 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACCAATG
45216476 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45216495 TTATCATCCA
Statistics
Matches: 122, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
39 12 0.10
40 110 0.90
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
Found at i:45223139 original size:21 final size:21
Alignment explanation
Indices: 45223111--45223162 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
45223101 TTTTTCCTAA
45223111 GATG-TAAATTGGATTGAATT
1 GATGTTAAATTGGATTGAATT
*
45223131 G-TGTTTAAATTGTATTGAATT
1 GATG-TTAAATTGGATTGAATT
45223152 GATGTTAAATT
1 GATGTTAAATT
45223163 TACTCGTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 2 0.07
20 1 0.04
21 23 0.82
22 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (21 bp):
GATGTTAAATTGGATTGAATT
Found at i:45225849 original size:25 final size:25
Alignment explanation
Indices: 45225802--45225849 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
45225792 TTATAATATG
* * * *
45225802 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
45225827 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
45225850 GTTTAAATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:45225916 original size:20 final size:20
Alignment explanation
Indices: 45225893--45225950 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
45225883 TAAACATGGT
45225893 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
* *
45225913 ATGTAAGATATGCACATGAT
1 ATGTATGATATGCACATGAC
45225933 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
45225951 GTGTATTCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:45225935 original size:11 final size:11
Alignment explanation
Indices: 45225897--45225950 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
45225887 CATGGTATGT
45225897 ATGATATGCAC
1 ATGATATGCAC
* *
45225908 ATGACATGTA-
1 ATGATATGCAC
45225918 A-GATATGCAC
1 ATGATATGCAC
*
45225928 ATGATATG--T
1 ATGATATGCAC
45225937 ATGATATGCAC
1 ATGATATGCAC
45225948 ATG
1 ATG
45225951 GTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 14 0.42
10 2 0.06
11 17 0.52
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:45226031 original size:23 final size:23
Alignment explanation
Indices: 45226001--45226073 Score: 121
Period size: 23 Copynumber: 3.1 Consensus size: 23
45225991 AGGAAGTGCA
45226001 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
45226024 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
45226047 AAAAGGGCTT-TCGCCCCAGTTATT
1 -AAAGGGCTTAT-GCCCCAGTTATT
45226071 AAA
1 AAA
45226074 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
23 27 0.56
24 21 0.44
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:45226056 original size:24 final size:24
Alignment explanation
Indices: 45226000--45226094 Score: 133
Period size: 24 Copynumber: 4.0 Consensus size: 24
45225990 GAGGAAGTGC
45226000 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
45226024 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
45226047 AAAAGGGCTT-TCGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
45226071 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
45226095 ATGATAAAGT
Statistics
Matches: 65, Mismatches: 1, Indels: 9
0.87 0.01 0.12
Matches are distributed among these distances:
23 24 0.37
24 30 0.46
25 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:45226326 original size:31 final size:31
Alignment explanation
Indices: 45226288--45226351 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
45226278 CGTTTACAGT
45226288 AAAGGCTTCGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* **
45226319 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
45226350 AA
1 AA
45226352 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:45229954 original size:52 final size:52
Alignment explanation
Indices: 45229890--45230012 Score: 185
Period size: 52 Copynumber: 2.4 Consensus size: 52
45229880 TATCTAGGAT
* *
45229890 ATGGCATTGTGCTAAGTGAAACAAGACCGTGGCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAACAAGACCATGGCATCTAAGTGAAATAAGTCC
* *
45229942 ATGGCAATGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAACAAGACCATGGCATCTAAGTGAAATAAGTCC
*
45229994 ATGAC-ATGGTGCTAAGTGA
1 ATGGCAAT-GTGCTAAGTGA
45230013 GAAATTTCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 2 0.03
52 63 0.97
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.24
Consensus pattern (52 bp):
ATGGCAATGTGCTAAGTGAAACAAGACCATGGCATCTAAGTGAAATAAGTCC
Done.