Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 154 of 433
Found at i:48059466 original size:80 final size:79
Alignment explanation
Indices: 48059316--48059482 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
48059306 CGGAATATAA
* *
48059316 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
48059381 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
48059396 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
48059458 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
48059475 CCGGATAT
1 CCGGATAT
48059483 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:48060330 original size:17 final size:19
Alignment explanation
Indices: 48060307--48060352 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
48060297 AAGAAGCATG
48060307 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
48060325 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
48060343 AATCATGCTC
1 AATCATGCTC
48060353 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:48067358 original size:40 final size:40
Alignment explanation
Indices: 48067313--48067479 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
48067303 CGGAATATAA
48067313 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
48067353 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
48067393 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48067433 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48067472 CCGGATAT
1 CCGGATAT
48067480 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48067463 original size:80 final size:79
Alignment explanation
Indices: 48067313--48067479 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
48067303 CGGAATATAA
* *
48067313 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
48067378 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
48067393 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
48067455 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
48067472 CCGGATAT
1 CCGGATAT
48067480 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:48068327 original size:17 final size:19
Alignment explanation
Indices: 48068304--48068349 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
48068294 AAGAAGCATG
48068304 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
48068322 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
48068340 AATCATGCTC
1 AATCATGCTC
48068350 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:48069401 original size:42 final size:42
Alignment explanation
Indices: 48069295--48069402 Score: 135
Period size: 42 Copynumber: 2.6 Consensus size: 42
48069285 ACGACCAAGC
* **
48069295 CACACGCCCGTGTGCTAGGTCGTGTAACTCTTGAAATGGCCT
1 CACACGCCCGTGTGCTAGGTCATGTAACTCTCAAAATGGCCT
** *
48069337 CACATTCCCGTATGCTAGGTCATGTAACTCTCAAAATGGCCT
1 CACACGCCCGTGTGCTAGGTCATGTAACTCTCAAAATGGCCT
* * *
48069379 CACACGCTCGTGTGCCAAGTCATG
1 CACACGCCCGTGTGCTAGGTCATG
48069403 CTAGGCCATG
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (42 bp):
CACACGCCCGTGTGCTAGGTCATGTAACTCTCAAAATGGCCT
Found at i:48071607 original size:47 final size:47
Alignment explanation
Indices: 48071547--48071740 Score: 309
Period size: 47 Copynumber: 4.1 Consensus size: 47
48071537 GGCCTTGCCT
* * * *
48071547 CTTTTAATAACTGGAGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
48071594 CTTTTGATCACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
48071641 CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCC
*
48071689 C-TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
48071735 CTTTTG
1 CTTTTG
48071741 CACTTCCTCC
Statistics
Matches: 135, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
46 22 0.16
47 91 0.67
48 22 0.16
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:48071615 original size:24 final size:24
Alignment explanation
Indices: 48071547--48071739 Score: 295
Period size: 23 Copynumber: 8.2 Consensus size: 24
48071537 GGCCTTGCCT
* *
48071547 CTTTTAATAACTGGAGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
48071571 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
48071594 CTTTTGATCACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
48071618 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
48071641 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
48071665 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
48071689 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
48071712 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
48071735 CTTTT
1 CTTTT
48071740 GCACTTCCTC
Statistics
Matches: 156, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
23 86 0.55
24 70 0.45
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:48071811 original size:9 final size:9
Alignment explanation
Indices: 48071797--48071853 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
48071787 ATCTCATGTG
48071797 CATATCATA
1 CATATCATA
*
48071806 CATATCATGTG
1 CATATCA--TA
48071817 CATATCATA
1 CATATCATA
* *
48071826 CATGTCATGTG
1 CATATCA--TA
48071837 CATATCATA
1 CATATCATA
48071846 CATATCAT
1 CATATCAT
48071854 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:48071813 original size:20 final size:20
Alignment explanation
Indices: 48071785--48071855 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
48071775 GCATTTATGA
*
48071785 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
48071805 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
48071825 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
48071845 ACATATCATGT
1 ACATATCATGT
48071856 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:48071820 original size:11 final size:11
Alignment explanation
Indices: 48071790--48071844 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
48071780 TATGAACATC
48071790 TCATGTGCATA
1 TCATGTGCATA
*
48071801 TCA--TACATA
1 TCATGTGCATA
48071810 TCATGTGCATA
1 TCATGTGCATA
* *
48071821 TCA--TACATG
1 TCATGTGCATA
48071830 TCATGTGCATA
1 TCATGTGCATA
48071841 TCAT
1 TCAT
48071845 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:48072933 original size:15 final size:15
Alignment explanation
Indices: 48072913--48072943 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48072903 TTAGTATAAT
48072913 GAAAAAGAGAAAATA
1 GAAAAAGAGAAAATA
*
48072928 GAAAAATAGAAAATA
1 GAAAAAGAGAAAATA
48072943 G
1 G
48072944 GAGATGACAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (15 bp):
GAAAAAGAGAAAATA
Found at i:48073879 original size:20 final size:22
Alignment explanation
Indices: 48073841--48073880 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
48073831 TTCAAATACG
*
48073841 ATAATATATATATATTTTCCTA
1 ATAATATATATATAATTTCCTA
48073863 ATAATA-AT-TATAATTTCC
1 ATAATATATATATAATTTCC
48073881 ATAAATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATATATATAATTTCCTA
Found at i:48076158 original size:8 final size:8
Alignment explanation
Indices: 48076145--48076174 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
48076135 CTAGATCGAC
48076145 AAAAGCCG
1 AAAAGCCG
48076153 AAAAGCCG
1 AAAAGCCG
*
48076161 AAATGCCG
1 AAAAGCCG
48076169 AAAAGC
1 AAAAGC
48076175 AGGCATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:48076657 original size:28 final size:26
Alignment explanation
Indices: 48076588--48076703 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 26
48076578 TAGAGGAAGC
*
48076588 GTTCTGGTGGCTCTGCCATAAATATCT
1 GTTCTGGTGGCTCTGCCA-CAATATCT
* *
48076615 GATCTGGTGGCTCTGCCACAAATATTT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
48076642 GTTTCTGGTGGCTCTGCCACAAGATCT
1 G-TTCTGGTGGCTCTGCCACAATATCT
* * *
48076669 GTATCTGGTGACTCTGTCACAATATTT
1 GT-TCTGGTGGCTCTGCCACAATATCT
48076696 GTTCTGGT
1 GTTCTGGT
48076704 AGCCATGCTG
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:48076675 original size:55 final size:53
Alignment explanation
Indices: 48076588--48076703 Score: 162
Period size: 55 Copynumber: 2.2 Consensus size: 53
48076578 TAGAGGAAGC
* *
48076588 GTTCTGGTGGCTCTGCCATAAATATCTGATCTGGTGGCTCTGCCACAAATATTT
1 GTTCTGGTGGCTCTGCCATAAAGATCTGATCTGGTGACTCTGCCAC-AATATTT
* *
48076642 GTTTCTGGTGGCTCTGCCA-CAAGATCTGTATCTGGTGACTCTGTCACAATATTT
1 G-TTCTGGTGGCTCTGCCATAAAGATCTG-ATCTGGTGACTCTGCCACAATATTT
48076696 GTTCTGGT
1 GTTCTGGT
48076704 AGCCATGCTG
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
53 7 0.12
54 16 0.29
55 33 0.59
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (53 bp):
GTTCTGGTGGCTCTGCCATAAAGATCTGATCTGGTGACTCTGCCACAATATTT
Found at i:48080688 original size:30 final size:30
Alignment explanation
Indices: 48080630--48080689 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
48080620 TTCCCGAGCC
* *
48080630 TAGGGGCAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
48080660 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
48080690 CATATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:48086564 original size:15 final size:15
Alignment explanation
Indices: 48086525--48086603 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
48086515 GTATCTTGGG
*
48086525 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
48086540 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
48086555 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
48086569 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
48086584 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
48086598 TTTCTT
1 TTTCTT
48086604 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:48086588 original size:29 final size:29
Alignment explanation
Indices: 48086516--48086602 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
48086506 CATAGTATCG
* * * *
48086516 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
48086546 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
48086575 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
48086603 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:48089031 original size:46 final size:46
Alignment explanation
Indices: 48088976--48089156 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
48088966 TAGGATGGTT
48088976 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
48089022 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
48089068 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
48089115 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48089157 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:48089137 original size:93 final size:93
Alignment explanation
Indices: 48088978--48089148 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
48088968 GGATGGTTGA
* *
48088978 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48089043 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
48089071 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48089136 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
48089149 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48090793 original size:373 final size:373
Alignment explanation
Indices: 48090108--48090821 Score: 1080
Period size: 373 Copynumber: 1.9 Consensus size: 373
48090098 ACAAACGGCA
* * * * * *
48090108 TAGTCATTGAAGCTCTGTATAGGGAGATATCTGATTCGTAATACACAGAGGTCAGAGTAGTTGAA
1 TAGTCATTGAAACTCTATACAGAGAGATATCTGATTCATAATACACAGAGGTCAGAGCAGTTGAA
*
48090173 CCCTGAAACAGGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAA
66 CCCTGAAACAAGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAA
*
48090238 AAAATTATAGATATATATATGAGTCTAGTTTCAGGAAAAATTTACGGAATTGGATTTCGAGTTTC
131 AAAATTATAGATATATATATGAGTCTAGTTTCAGGAAAAATTTACGGAACTGGATTTCGAGTTTC
* * *
48090303 GTAACTCGAGATATGATTTTTAAAGCGACTGTGATGCAGTTAGCCAGCTTGTCTGGAAATTTTAA
196 GTAACTCGAGATATGAATTTTAAAGCGACTGTGACGCAGTTAGCCAGCTTGACTGGAAATTTTAA
* *
48090368 AATGAATTGTATGAGCTGTTTAATTAATGAATTAAGTCCGTTAACACCTCGTGTTCGACTCTGGA
261 AATGAATTGTATGAGCTGTTTAAGTAATGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCGGA
48090433 AACGGTCTCGGGTACGGGGTGTTACATGTACATATTCCTTATTCATTC
326 AACGGTCTCGGGTACGGGGTGTTACATGTACATATTCCTTATTCATTC
* *
48090481 TAGTCATTGAAATTCTATACAGAGAGATATCTGATTCATAATATACAGAGGTCAGAGCAGTTGAA
1 TAGTCATTGAAACTCTATACAGAGAGATATCTGATTCATAATACACAGAGGTCAGAGCAGTTGAA
* ***
48090546 CCCTGAAACAAGGGAGACTTTAACTAATAAACTGTACTAATTTGCTTGACCAAAAATTCTAGAAA
66 CCCTGAAACAAGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAA
* *
48090611 AAAATTAGTA-A-ATATATATGAGTCTAGTTTCAGGGAAAATTTATGGAACTGGATTTCGAGTTT
131 AAAATTA-TAGATATATATATGAGTCTAGTTTCAGGAAAAATTTACGGAACTGGATTTCGAGTTT
* *
48090674 CAG-AACTCGAGATATGAAATTTT-AAGCGACTGTGACGTAGATT-GCTAGCTTGACTGGAAATT
195 C-GTAACTCGAGATATG-AATTTTAAAGCGACTGTGACGCAG-TTAGCCAGCTTGACTGGAAATT
* *
48090736 TTAAAAAT-AACTTGTTTGAGCTGTTTAAGTAATGAATTAAGTCTGTTAACACCTCGTGTTCGAC
257 TT-AAAATGAA-TTGTATGAGCTGTTTAAGTAATGAATTAAGTCCGTTAACACCTCGTGTTCGAC
** *
48090800 TCCGGTTACGGTTTCGGGTACG
320 TCCGGAAACGGTCTCGGGTACG
48090822 AGACGTTACA
Statistics
Matches: 307, Mismatches: 28, Indels: 12
0.88 0.08 0.03
Matches are distributed among these distances:
372 99 0.32
373 206 0.67
374 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (373 bp):
TAGTCATTGAAACTCTATACAGAGAGATATCTGATTCATAATACACAGAGGTCAGAGCAGTTGAA
CCCTGAAACAAGGGAGACTTTAACTAATAAACTGTACTAATTGGCCCAACCAAAAATTCTAGAAA
AAAATTATAGATATATATATGAGTCTAGTTTCAGGAAAAATTTACGGAACTGGATTTCGAGTTTC
GTAACTCGAGATATGAATTTTAAAGCGACTGTGACGCAGTTAGCCAGCTTGACTGGAAATTTTAA
AATGAATTGTATGAGCTGTTTAAGTAATGAATTAAGTCCGTTAACACCTCGTGTTCGACTCCGGA
AACGGTCTCGGGTACGGGGTGTTACATGTACATATTCCTTATTCATTC
Found at i:48103926 original size:28 final size:28
Alignment explanation
Indices: 48103862--48103946 Score: 122
Period size: 27 Copynumber: 3.1 Consensus size: 28
48103852 GGAAACGTTT
*
48103862 TGGTGGCTTTGCCACAAATATCTG-ATC
1 TGGTGGCTCTGCCACAAATATCTGTATC
48103889 TGGTGGCTCTGCCACAAATATCTGTATC
1 TGGTGGCTCTGCCACAAATATCTGTATC
* *
48103917 TGGTGACTCTGTCAC-AATATCTGT-TC
1 TGGTGGCTCTGCCACAAATATCTGTATC
48103943 TGGT
1 TGGT
48103947 AGCCATGCTG
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 6 0.11
27 32 0.59
28 16 0.30
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.35
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAAATATCTGTATC
Found at i:48109338 original size:33 final size:33
Alignment explanation
Indices: 48109296--48109364 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
48109286 AGCTAGTGAT
*
48109296 TGACTATCATCCGGGAAAGGCTAATGTTGTTGC
1 TGACTATCATCCGAGAAAGGCTAATGTTGTTGC
*
48109329 TGACTATCATCTGAGAAAGGCTAATGTTGTTGC
1 TGACTATCATCCGAGAAAGGCTAATGTTGTTGC
48109362 TGA
1 TGA
48109365 TGCTTTAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (33 bp):
TGACTATCATCCGAGAAAGGCTAATGTTGTTGC
Found at i:48117919 original size:27 final size:27
Alignment explanation
Indices: 48117879--48117932 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
48117869 TCATACAACC
* *
48117879 CATGTAATATTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
48117906 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
48117933 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:48122868 original size:40 final size:40
Alignment explanation
Indices: 48122813--48123030 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
48122803 CGGATGGTAA
* *
48122813 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
48122853 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
48122893 CTGGGCTAAGTCTCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48122933 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
48122973 CCAGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
48123013 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48123031 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 17 0.10
40 144 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48131301 original size:46 final size:45
Alignment explanation
Indices: 48131234--48131399 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 45
48131224 CGCCCCTAAG
*
48131234 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* *
48131280 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * *
48131327 CGAACTCGGACTCAACTCAACGAGTTC--ACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
48131371 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
48131400 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
41 6 0.06
42 2 0.02
43 1 0.01
44 26 0.26
46 28 0.28
47 27 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:48131392 original size:91 final size:92
Alignment explanation
Indices: 48131235--48131403 Score: 277
Period size: 91 Copynumber: 1.8 Consensus size: 92
48131225 GCCCCTAAGT
* *
48131235 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTC-GACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
48131300 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
48131328 GAACTCGGACTCAACTCAACGAGTTC-ACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
48131392 GAGTTCGGATGC
66 GAGTTCGGATGC
48131404 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 46 0.65
93 25 0.35
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:48135083 original size:40 final size:40
Alignment explanation
Indices: 48135038--48135167 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
48135028 CGGAATACAA
48135038 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
48135078 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
48135118 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
48135158 CCGGATATAA
1 CCGGATATAA
48135168 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:48135182 original size:40 final size:40
Alignment explanation
Indices: 48135038--48135200 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
48135028 CGGAATACAA
* **
48135038 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
48135078 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
48135118 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
48135158 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
48135197 CCGG
1 CCGG
48135201 GTATCATTCA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:48139226 original size:66 final size:68
Alignment explanation
Indices: 48139150--48139336 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
48139140 TAGTACCACT
*
48139150 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
48139212 CACG
65 CACG
48139216 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
48139281 ATCACG
63 ATCACG
48139287 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
48139337 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:48139261 original size:71 final size:71
Alignment explanation
Indices: 48139173--48139336 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48139163 CGATTTGTCT
48139173 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48139238 CTTTCA
66 CTTTCA
48139244 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48139309 CTTTCA
66 CTTTCA
48139315 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
48139337 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:48139374 original size:71 final size:70
Alignment explanation
Indices: 48139173--48139370 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
48139163 CGATTTGTCT
* * *
48139173 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
48139238 CTTTCA
65 CTTTCA
* * *
48139244 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
48139309 CTTTCA
65 CTTTCA
* *
48139315 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
48139371 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:48146791 original size:66 final size:68
Alignment explanation
Indices: 48146715--48146901 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
48146705 TAGTACCACT
*
48146715 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
48146777 CACG
65 CACG
48146781 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
48146846 ATCACG
63 ATCACG
48146852 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
48146902 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:48146826 original size:71 final size:71
Alignment explanation
Indices: 48146738--48146901 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48146728 CGATTTGTCT
48146738 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48146803 CTTTCA
66 CTTTCA
48146809 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48146874 CTTTCA
66 CTTTCA
48146880 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
48146902 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:48146939 original size:71 final size:70
Alignment explanation
Indices: 48146738--48146935 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
48146728 CGATTTGTCT
* * *
48146738 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
48146803 CTTTCA
65 CTTTCA
* * *
48146809 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
48146874 CTTTCA
65 CTTTCA
* *
48146880 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
48146936 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:48147851 original size:40 final size:40
Alignment explanation
Indices: 48147796--48148045 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
48147786 AACATTGGAA
48147796 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48147836 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48147876 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48147916 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
48147956 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
48147995 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
48148036 CTATATCCGG
1 ATATATCCGG
48148046 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:48155112 original size:40 final size:40
Alignment explanation
Indices: 48155057--48155306 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
48155047 AACATTGGAA
48155057 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48155097 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48155137 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
48155177 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
48155217 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
48155256 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
48155297 CTATATCCGG
1 ATATATCCGG
48155307 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:48157048 original size:26 final size:26
Alignment explanation
Indices: 48157019--48157128 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
48157009 TGATACAAAT
48157019 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
48157045 TGATAATGTGGGTTAGGTAAATGTTTCA
1 TGATAA--TGGGTTAGGTAAATGTTCCA
48157073 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
48157099 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
48157125 TGAT
1 TGAT
48157129 GGGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
26 55 0.69
28 25 0.31
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:48157078 original size:54 final size:52
Alignment explanation
Indices: 48157019--48157128 Score: 193
Period size: 54 Copynumber: 2.1 Consensus size: 52
48157009 TGATACAAAT
*
48157019 TGATAATGGGTTAGGTAAATGTTCCATGATAATGTGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAA--TGGGTTAGGTAAATGTTCCA
48157073 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
48157125 TGAT
1 TGAT
48157129 GGGAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
52 23 0.42
54 32 0.58
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:48158666 original size:26 final size:26
Alignment explanation
Indices: 48158614--48158666 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
48158604 TTTATAGTTT
*
48158614 TACCCCTAGTAGATAAATTACCGAAA
1 TACCCCTAGTAGATAAATGACCGAAA
* *
48158640 TACCCCTAG-AGTTAAATGGACCTAAA
1 TACCCCTAGTAGATAAAT-GACCGAAA
48158666 T
1 T
48158667 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGTAGATAAATGACCGAAA
Found at i:48162407 original size:40 final size:40
Alignment explanation
Indices: 48162361--48162453 Score: 150
Period size: 40 Copynumber: 2.3 Consensus size: 40
48162351 CGTTTGAATG
* * *
48162361 AAAAACGCCGCTAAAGAATGAGCATTAGCGGTGCTTTTTT
1 AAAAACGCCGCTAAAGAACGAGCATTAGCGGTGCTTTCTA
*
48162401 AAAAACGCCACTAAAGAACGAGCATTAGCGGTGCTTTCTA
1 AAAAACGCCGCTAAAGAACGAGCATTAGCGGTGCTTTCTA
48162441 AAAAACGCCGCTA
1 AAAAACGCCGCTA
48162454 TAGGTTCACC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGAACGAGCATTAGCGGTGCTTTCTA
Found at i:48162776 original size:7 final size:7
Alignment explanation
Indices: 48162766--48162851 Score: 64
Period size: 7 Copynumber: 11.9 Consensus size: 7
48162756 ATAGGTTAGG
48162766 GGTTTAT
1 GGTTTAT
48162773 GGTTTAT
1 GGTTTAT
*
48162780 GAGTTAAT
1 G-GTTTAT
** *
48162788 ATTTTAA
1 GGTTTAT
48162795 GGTTTAT
1 GGTTTAT
*
48162802 GGATTAT
1 GGTTTAT
*
48162809 CGGTTTAA
1 -GGTTTAT
*
48162817 GGATTAT
1 GGTTTAT
*
48162824 GGGTTTAG
1 -GGTTTAT
*
48162832 GGATTAT
1 GGTTTAT
48162839 GGTTTAT
1 GGTTTAT
48162846 GGTTTA
1 GGTTTA
48162852 AAGGCTATGA
Statistics
Matches: 58, Mismatches: 18, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
7 43 0.74
8 15 0.26
ACGTcount: A:0.23, C:0.01, G:0.28, T:0.48
Consensus pattern (7 bp):
GGTTTAT
Found at i:48162815 original size:15 final size:14
Alignment explanation
Indices: 48162795--48162847 Score: 70
Period size: 15 Copynumber: 3.6 Consensus size: 14
48162785 AATATTTTAA
48162795 GGTTTATGGATTAT
1 GGTTTATGGATTAT
*
48162809 CGGTTTAAGGATTAT
1 -GGTTTATGGATTAT
*
48162824 GGGTTTAGGGATTAT
1 -GGTTTATGGATTAT
48162839 GGTTTATGG
1 GGTTTATGG
48162848 TTTAAAGGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 8 0.24
15 26 0.76
ACGTcount: A:0.21, C:0.02, G:0.34, T:0.43
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:48163114 original size:26 final size:27
Alignment explanation
Indices: 48163048--48163115 Score: 113
Period size: 26 Copynumber: 2.6 Consensus size: 27
48163038 TCAAATTCTA
48163048 AAGATTTCAAA-TTTAGAATAATTTTC
1 AAGATTTCAAATTTTAGAATAATTTTC
48163074 AAGATTTCAAATTTTA-AATAATTTTC
1 AAGATTTCAAATTTTAGAATAATTTTC
*
48163100 AATATTTCAAATTTTA
1 AAGATTTCAAATTTTA
48163116 TCTAATTCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 36 0.90
27 4 0.10
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (27 bp):
AAGATTTCAAATTTTAGAATAATTTTC
Found at i:48163886 original size:261 final size:261
Alignment explanation
Indices: 48163383--48163895 Score: 735
Period size: 262 Copynumber: 2.0 Consensus size: 261
48163373 AAAACGGCAT
*
48163383 CGTTTTACCATTGTTATCAGTGGCGTTTACTAAAAACGCCGCAAAATGTGATAAGTGGTTAGCAA
1 CGTTTTACCATTGTTATCAGTGGCGTTTACTAAAAACGCCGCAAAATGTGATAAGTAGTTAGCAA
* * * *
48163448 AACGGTGACGTTTTATGCTTTTCATTTAGTGGCGCTTCCATAAAACACCGCCAATGTACATTACA
66 AACGGTGACGTTTTATACTTTTCATTTAGTGGCACTTCCATAAAACACCACAAATGTA-ATTACA
**
48163513 AGTCCTAAAAATGATGTCGTTTTATCCTTGCTGTTAGTGACGTTTGTTTCAAAACACCGCAATAG
130 AGTCCTAAAAACAATGTCGTTTTATCCTTGCTGTTAGTGACGTTTGTTTCAAAACACCGCAATAG
* *
48163578 GCTATGCATTACCAGAGTTTTAGTCAAAAACGCTGCAAATATGTGTAACGTGTGAGTAAAATGGC
195 GCTATGCATTACCAGAGTTTTAGTCAAAAACGCCGCAAATATGTGTAACATGTGAGTAAAATGGC
48163643 CA
260 CA
* * *
48163645 CGTTTTTCCATTGTTATTAGTGGTGTTTACTAAAAACGCCGCAAAATGTGATAAGTAGTTAGCAA
1 CGTTTTACCATTGTTATCAGTGGCGTTTACTAAAAACGCCGCAAAATGTGATAAGTAGTTAGCAA
* * *
48163710 AACGGTGACGTTTTATACTTTTTATTTAGTGGCACTTCCATGAAACGCCACAAAGTGT-ATTACA
66 AACGGTGACGTTTTATACTTTTCATTTAGTGGCACTTCCATAAAACACCACAAA-TGTAATTACA
* * * * ***
48163774 AGTCCTAAAAACAATGTTGTTTTATCTTTGTTGTTAGTGGCGTTTG-TTCTAAAACGTTGCAATA
130 AGTCCTAAAAACAATGTCGTTTTATCCTTGCTGTTAGTGACGTTTGTTTC-AAAACACCGCAATA
* * * *
48163838 GGCTATGCATTACCGGCA-TTTTGGTCAAAAATGCCGCAAATATGTGTAATATGTGAGT
194 GGCTATGCATTACCAG-AGTTTTAGTCAAAAACGCCGCAAATATGTGTAACATGTGAGT
48163896 CAAACGGTGA
Statistics
Matches: 222, Mismatches: 26, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
260 3 0.01
261 107 0.48
262 109 0.49
263 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (261 bp):
CGTTTTACCATTGTTATCAGTGGCGTTTACTAAAAACGCCGCAAAATGTGATAAGTAGTTAGCAA
AACGGTGACGTTTTATACTTTTCATTTAGTGGCACTTCCATAAAACACCACAAATGTAATTACAA
GTCCTAAAAACAATGTCGTTTTATCCTTGCTGTTAGTGACGTTTGTTTCAAAACACCGCAATAGG
CTATGCATTACCAGAGTTTTAGTCAAAAACGCCGCAAATATGTGTAACATGTGAGTAAAATGGCC
A
Found at i:48163911 original size:261 final size:261
Alignment explanation
Indices: 48163371--48163912 Score: 741
Period size: 261 Copynumber: 2.1 Consensus size: 261
48163361 TTAGGTTTTC
48163371 GTAAAACGG-CATCGTTTTACCATTGTTATCAGTGGCGTTTACTAAAAACGCCGCAAAATGTGAT
1 GTAAAACGGCCA-CGTTTTACCATTGTTATCAGTGGCGTTTACTAAAAACGCCGCAAAATGTGAT
* * * * *
48163435 AAGTGGTTAGCAAAACGGTGACGTTTTATGCTTTTCATTTAGTGGCGCTTCCATAAAACACCGCC
65 AAGTAGTTAGCAAAACGGTGACGTTTTATACTTTTCATTTAGTGGCACTTCCATAAAACACCACA
**
48163500 AATGTACATTACAAGTCCTAAAAATGATGTCGTTTTATCCTTGCTGTTAGTGACGTTTGTTTCAA
130 AATGTA-ATTACAAGTCCTAAAAACAATGTCGTTTTATCCTTGCTGTTAGTGACGTTTGTTTCAA
* *
48163565 AACACCGCAATAGGCTATGCATTACCAGAGTTTTAGTCAAAAACGCTGCAAATATGTGTAACGTG
194 AACACCGCAATAGGCTATGCATTACCAGAGTTTTAGTCAAAAACGCCGCAAATATGTGTAACATG
48163630 TGA
259 TGA
* * * *
48163633 GTAAAATGGCCACGTTTTTCCATTGTTATTAGTGGTGTTTACTAAAAACGCCGCAAAATGTGATA
1 GTAAAACGGCCACGTTTTACCATTGTTATCAGTGGCGTTTACTAAAAACGCCGCAAAATGTGATA
* * *
48163698 AGTAGTTAGCAAAACGGTGACGTTTTATACTTTTTATTTAGTGGCACTTCCATGAAACGCCACAA
66 AGTAGTTAGCAAAACGGTGACGTTTTATACTTTTCATTTAGTGGCACTTCCATAAAACACCACAA
* * * *
48163763 AGTGT-ATTACAAGTCCTAAAAACAATGTTGTTTTATCTTTGTTGTTAGTGGCGTTTG-TTCTAA
131 A-TGTAATTACAAGTCCTAAAAACAATGTCGTTTTATCCTTGCTGTTAGTGACGTTTGTTTC-AA
*** * * * *
48163826 AACGTTGCAATAGGCTATGCATTACCGGCA-TTTTGGTCAAAAATGCCGCAAATATGTGTAATAT
194 AACACCGCAATAGGCTATGCATTACCAG-AGTTTTAGTCAAAAACGCCGCAAATATGTGTAACAT
48163890 GTGA
258 GTGA
* **
48163894 GTCAAACGGTGACGTTTTA
1 GTAAAACGGCCACGTTTTA
48163913 TACTTTGTAG
Statistics
Matches: 244, Mismatches: 32, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
260 3 0.01
261 119 0.49
262 117 0.48
263 5 0.02
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (261 bp):
GTAAAACGGCCACGTTTTACCATTGTTATCAGTGGCGTTTACTAAAAACGCCGCAAAATGTGATA
AGTAGTTAGCAAAACGGTGACGTTTTATACTTTTCATTTAGTGGCACTTCCATAAAACACCACAA
ATGTAATTACAAGTCCTAAAAACAATGTCGTTTTATCCTTGCTGTTAGTGACGTTTGTTTCAAAA
CACCGCAATAGGCTATGCATTACCAGAGTTTTAGTCAAAAACGCCGCAAATATGTGTAACATGTG
A
Found at i:48164066 original size:14 final size:14
Alignment explanation
Indices: 48164035--48164073 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 14
48164025 ACCTTAAGTG
*
48164035 TTTTCCCCTTAAAA
1 TTTTCCCCCTAAAA
48164049 -TTTCCCCCTAAAA
1 TTTTCCCCCTAAAA
48164062 TTTTCCCCCTAA
1 TTTTCCCCCTAA
48164074 CCCTAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.26, C:0.36, G:0.00, T:0.38
Consensus pattern (14 bp):
TTTTCCCCCTAAAA
Found at i:48166297 original size:29 final size:29
Alignment explanation
Indices: 48166265--48166330 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
48166255 TAATTTGAAT
*
48166265 TAATTTATT-TAAATATTATTAAATTAATA
1 TAATTT-TTATAAATATTATTAAATTAAAA
*
48166294 TAATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTTATAAATATTATTAAATTAAAA
48166323 TAATTTTT
1 TAATTTTT
48166331 TTTCATGTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 2 0.06
29 32 0.94
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
TAATTTTTATAAATATTATTAAATTAAAA
Found at i:48166321 original size:15 final size:15
Alignment explanation
Indices: 48166267--48166321 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
48166257 ATTTGAATTA
*
48166267 ATTTATTTAAATATT
1 ATTTAATTAAATATT
*
48166282 ATTAAATTAATATAATT
1 ATTTAATTAA-AT-ATT
48166299 -TTT-A-TAAATATT
1 ATTTAATTAAATATT
48166311 ATTTAATTAAA
1 ATTTAATTAAA
48166322 ATAATTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
12 3 0.09
13 5 0.16
14 4 0.12
15 13 0.41
16 4 0.12
17 3 0.09
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:48166617 original size:9 final size:9
Alignment explanation
Indices: 48166589--48166773 Score: 221
Period size: 9 Copynumber: 20.7 Consensus size: 9
48166579 TATATACTTG
48166589 AACTTACAT
1 AACTTACAT
* *
48166598 AGCTCACAT
1 AACTTACAT
*
48166607 AACTTATAT
1 AACTTACAT
*
48166616 AACTTATAT
1 AACTTACAT
48166625 AACTTACAT
1 AACTTACAT
48166634 AACTTACAT
1 AACTTACAT
48166643 AACTTACAT
1 AACTTACAT
48166652 AACTTACAT
1 AACTTACAT
**
48166661 AACCCACAT
1 AACTTACAT
48166670 AACTTACAT
1 AACTTACAT
*
48166679 AACTTATAT
1 AACTTACAT
48166688 AACTTACAT
1 AACTTACAT
48166697 AACTTACAT
1 AACTTACAT
* *
48166706 AACTCAAAT
1 AACTTACAT
*
48166715 AACTCACAT
1 AACTTACAT
*
48166724 AACCTACAT
1 AACTTACAT
**
48166733 AACTTTTAT
1 AACTTACAT
48166742 AACTTACAT
1 AACTTACAT
48166751 AA--TATCAT
1 AACTTA-CAT
*
48166759 AACTTATAT
1 AACTTACAT
48166768 AACTTA
1 AACTTA
48166774 ATTATACTTA
Statistics
Matches: 150, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
7 2 0.01
8 5 0.03
9 141 0.94
10 2 0.01
ACGTcount: A:0.44, C:0.22, G:0.01, T:0.34
Consensus pattern (9 bp):
AACTTACAT
Found at i:48169934 original size:47 final size:47
Alignment explanation
Indices: 48169847--48169955 Score: 137
Period size: 47 Copynumber: 2.3 Consensus size: 47
48169837 ATAGCCCCGC
**
48169847 TATGGTCTTACATCTTATACACATATCACACCGATCCCATATCCCAGA
1 TATGGTCTTACA-CAAATACACATATCACACCGATCCCATATCCCAGA
* * * * *
48169895 TATGGTCTTACACAAATGCACATATCACTCTGATGCCATATCCTAGA
1 TATGGTCTTACACAAATACACATATCACACCGATCCCATATCCCAGA
*
48169942 TATGATCTTACACA
1 TATGGTCTTACACA
48169956 GAAATAACTT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 41 0.77
48 12 0.23
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (47 bp):
TATGGTCTTACACAAATACACATATCACACCGATCCCATATCCCAGA
Found at i:48170017 original size:31 final size:31
Alignment explanation
Indices: 48169980--48170121 Score: 205
Period size: 31 Copynumber: 4.6 Consensus size: 31
48169970 CTTGTGGCCG
* * **
48169980 AAGCTACCACTATTCATTGATCA-GTCAGCTG
1 AAGCTACCACTTTTCACTGATCAGGT-AGCCA
* *
48170011 AAGCTACCATTTTTCACTGATCAGGTAGTCA
1 AAGCTACCACTTTTCACTGATCAGGTAGCCA
48170042 AAGCTACCACTTTTCACTGATCAGGTAGCCA
1 AAGCTACCACTTTTCACTGATCAGGTAGCCA
*
48170073 AAGCTACCACTTTTCACTAATCAGGTAGCCA
1 AAGCTACCACTTTTCACTGATCAGGTAGCCA
48170104 AAGCTACCACTTTTCACT
1 AAGCTACCACTTTTCACT
48170122 TGTCATTTTT
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
31 99 0.98
32 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCCA
Found at i:48170206 original size:50 final size:51
Alignment explanation
Indices: 48170097--48170225 Score: 179
Period size: 50 Copynumber: 2.5 Consensus size: 51
48170087 CACTAATCAG
* * * * * *
48170097 GTAGCCAAAGCTACCACTTTTCACTTGTCATTTTTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAAT
*
48170148 GTAACCGAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAAT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAAT
*
48170198 GTAGCCGAAACTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
48170226 TGTCATGGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 45 0.66
51 23 0.34
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAGATAAAT
Found at i:48170554 original size:2 final size:2
Alignment explanation
Indices: 48170547--48170576 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
48170537 CAAGTCATTC
*
48170547 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48170577 TTTCCTCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48175715 original size:31 final size:31
Alignment explanation
Indices: 48175660--48175755 Score: 142
Period size: 31 Copynumber: 3.1 Consensus size: 31
48175650 TTTAATTTTT
*
48175660 ATGCTACATTTGCTT-TT-TTGGTTGGATTTC
1 ATGCTATATTTG-TTGTTATTGGTTGGATTTC
48175690 ATGCTATATTTGTTGTTATTGGTTGGATTTC
1 ATGCTATATTTGTTGTTATTGGTTGGATTTC
* *
48175721 ATGCTATATTTGCTGTTATTGGTTGGATTTA
1 ATGCTATATTTGTTGTTATTGGTTGGATTTC
48175752 ATGC
1 ATGC
48175756 AAAAAAGGTG
Statistics
Matches: 61, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
29 2 0.03
30 13 0.21
31 46 0.75
ACGTcount: A:0.17, C:0.09, G:0.22, T:0.52
Consensus pattern (31 bp):
ATGCTATATTTGTTGTTATTGGTTGGATTTC
Found at i:48175885 original size:43 final size:43
Alignment explanation
Indices: 48175833--48176058 Score: 292
Period size: 43 Copynumber: 5.3 Consensus size: 43
48175823 AAAAAGTGAT
* *
48175833 GCTAAAAGCCGTGACTTTTAGCGGCGCTTCTACCACAAACACC
1 GCTAAAAGCCATGACTTTTAGCGGCGCTTCTACCACAAACGCC
* * *
48175876 TCTAAAAGCCATGACTTTTAGCGACGCTTCTCCCACAAACGCC
1 GCTAAAAGCCATGACTTTTAGCGGCGCTTCTACCACAAACGCC
* * * * * *
48175919 ACTAAAAGGCATGACTATTAGCGGCGCCTCTATCACAAACGTC
1 GCTAAAAGCCATGACTTTTAGCGGCGCTTCTACCACAAACGCC
* *
48175962 GTTAAAAGCCATGACTTTTAGCGGCGCTTCTCCCACAAACGCC
1 GCTAAAAGCCATGACTTTTAGCGGCGCTTCTACCACAAACGCC
* *
48176005 GCTAAAGGCCATGACTTTTAGCGGCACTTCT-CACACAAACGCC
1 GCTAAAAGCCATGACTTTTAGCGGCGCTTCTAC-CACAAACGCC
*
48176048 GCTAAAGGCCA
1 GCTAAAAGCCA
48176059 CTTTTAACGG
Statistics
Matches: 158, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
42 1 0.01
43 157 0.99
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (43 bp):
GCTAAAAGCCATGACTTTTAGCGGCGCTTCTACCACAAACGCC
Found at i:48177428 original size:14 final size:15
Alignment explanation
Indices: 48177409--48177441 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
48177399 TTTGATCAAG
48177409 TAAAATTAAAT-AAA
1 TAAAATTAAATAAAA
*
48177423 TAAAATTAATTAAAA
1 TAAAATTAAATAAAA
48177438 TAAA
1 TAAA
48177442 TGTGATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAAATTAAATAAAA
Found at i:48177915 original size:20 final size:18
Alignment explanation
Indices: 48177852--48177942 Score: 55
Period size: 17 Copynumber: 4.9 Consensus size: 18
48177842 TAATAGTTTT
48177852 AATATTAAATTTAAT-TT-
1 AATATT-AATTTAATATTA
* *
48177869 AATACTTATTTTAATAGTA
1 AATA-TTAATTTAATATTA
**
48177888 TTTTATTAATTTAATATTA
1 -AATATTAATTTAATATTA
*
48177907 AACTAATT-ATCATAATATTA
1 AA-T-ATTAAT-TTAATATTA
48177927 AAT-TTAATTTAATATT
1 AATATTAATTTAATATT
48177943 TATCTTGTAG
Statistics
Matches: 56, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
17 20 0.36
18 5 0.09
19 16 0.29
20 15 0.27
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (18 bp):
AATATTAATTTAATATTA
Found at i:48177985 original size:61 final size:55
Alignment explanation
Indices: 48177919--48178053 Score: 153
Period size: 61 Copynumber: 2.3 Consensus size: 55
48177909 CTAATTATCA
48177919 TAATATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTCTATTAATTCAATATATT
1 TAATATTAAATTTAATTTAATATTTATC-T-T-GATAAGTATT-TATTAA-TCAA-ATATT
* * * *
48177980 TAATATTAAAATAAATCTAATATTTATCTTGATAAGTATTTATTAATCTAATATT
1 TAATATTAAATTTAATTTAATATTTATCTTGATAAGTATTTATTAATCAAATATT
*
48178035 AAAGTGATTAAATTTAATT
1 TAA-T-ATTAAATTTAATT
48178054 ATACTTCAAC
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
55 7 0.11
56 4 0.06
57 16 0.25
58 10 0.16
59 1 0.02
60 1 0.02
61 25 0.39
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.48
Consensus pattern (55 bp):
TAATATTAAATTTAATTTAATATTTATCTTGATAAGTATTTATTAATCAAATATT
Found at i:48180244 original size:29 final size:29
Alignment explanation
Indices: 48180212--48180286 Score: 123
Period size: 29 Copynumber: 2.6 Consensus size: 29
48180202 GTTTTTGTTA
48180212 AAGGAATGCCTTTGTGGAAAATCTCTAAT
1 AAGGAATGCCTTTGTGGAAAATCTCTAAT
* *
48180241 AAGGAATGGCTTTGTGGCAAATCTCTAAT
1 AAGGAATGCCTTTGTGGAAAATCTCTAAT
*
48180270 AAGGAATACCTTTGTGG
1 AAGGAATGCCTTTGTGG
48180287 TAATCTGTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (29 bp):
AAGGAATGCCTTTGTGGAAAATCTCTAAT
Found at i:48190977 original size:43 final size:43
Alignment explanation
Indices: 48190924--48191009 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
48190914 TTTTCACTTG
*
48190924 ACTTAAAAAAATACAATTTAATCATTAAAGTTTTTAAAATTAT
1 ACTTAAAAAAATACAATTTAATCATTAAAGTTTTCAAAATTAT
* *
48190967 ACTTAAAAAAATACAATTTAATTATTAAAGTTTTCAAATTTAT
1 ACTTAAAAAAATACAATTTAATCATTAAAGTTTTCAAAATTAT
48191010 TTTTTATGCC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (43 bp):
ACTTAAAAAAATACAATTTAATCATTAAAGTTTTCAAAATTAT
Found at i:48193598 original size:49 final size:49
Alignment explanation
Indices: 48193492--48193621 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 49
48193482 GCACATCAAA
* *
48193492 GTCGATGCCATATCCCAGACAAGTCTTACACTGACTTTCATATATCGAG
1 GTCGATGCCATATCCTAGACAAGTCTTACACTGACTCTCATATATCGAG
* * * * * * *
48193541 GCCAATGCCGTGTCCTAGACAAGTCTTACACTGGCTCTCATCTATTG-G
1 GTCGATGCCATATCCTAGACAAGTCTTACACTGACTCTCATATATCGAG
*
48193589 TGTCGATGCCATATCCCTA-ACAGGTCTTACACT
1 -GTCGATGCCATAT-CCTAGACAAGTCTTACACT
48193622 AACACACAAC
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
48 1 0.02
49 60 0.92
50 4 0.06
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (49 bp):
GTCGATGCCATATCCTAGACAAGTCTTACACTGACTCTCATATATCGAG
Found at i:48193713 original size:48 final size:48
Alignment explanation
Indices: 48193642--48193856 Score: 237
Period size: 46 Copynumber: 4.6 Consensus size: 48
48193632 AAGCTGACAC
* *
48193642 CATGTCCCAAACAGGTCTTACACTAGCTTGTAGATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTAGATCTCGAGGCCGATG
* * * *
48193690 CATGTCCCAGACATGTCTTACACTAGC-TCTCG-TCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTAGATCTCGAGGCCGATG
* * * *
48193736 CATGTCCCAGACATGTCTTATACTGGCTTGTATATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTAGATCTCGAGGCCGATG
* * *
48193784 CATGTCCCAGACATGTCTTATACT-GACTCTCATA-A--T-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAG-CT-T-GTAGATCTCGAGGCCGATG
48193830 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
48193857 ACACATATCA
Statistics
Matches: 143, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
46 69 0.48
47 8 0.06
48 62 0.43
49 2 0.01
50 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTAGATCTCGAGGCCGATG
Found at i:48193865 original size:94 final size:93
Alignment explanation
Indices: 48193642--48193856 Score: 292
Period size: 94 Copynumber: 2.3 Consensus size: 93
48193632 AAGCTGACAC
* * * *
48193642 CATGTCCCAAACAGGTCTTACACTAGCTTGTAGATCTCGAGGCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
*
48193707 TTACACTAGCTCTCGTCTCAATGCCGATG
66 TTACACTAGCTCTCG-ATCAATGCCGATG
* *
48193736 CATGTCCCAGACATGTCTTATACTGGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
*
48193801 TTATACT-GACTCTC-AT-AATGTGGCCGATG
66 TTACACTAG-CTCTCGATCAA--T-GCCGATG
48193830 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
48193857 ACACATATCA
Statistics
Matches: 107, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
91 2 0.02
92 1 0.01
93 2 0.02
94 102 0.95
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCAATGCATGTCCCAGACATGTC
TTACACTAGCTCTCGATCAATGCCGATG
Found at i:48201377 original size:19 final size:19
Alignment explanation
Indices: 48201335--48201378 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
48201325 ATAGCTCTGC
*
48201335 AGTTT-TGAAAATTTTTTA
1 AGTTTCTGAAAATTTTTGA
48201353 AGTTTCTGAAAATTCTTTGA
1 AGTTTCTGAAAATT-TTTGA
48201373 A-TTTCT
1 AGTTTCT
48201379 AAATTAGTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (19 bp):
AGTTTCTGAAAATTTTTGA
Found at i:48203031 original size:40 final size:40
Alignment explanation
Indices: 48202976--48203057 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
48202966 GAGGTGTTAC
48202976 ACAATTAGTAGGATAAATAGGAAAATTAAAAATTATAGAT
1 ACAATTAGTAGGATAAATAGGAAAATTAAAAATTATAGAT
*
48203016 ACAATTAGTCGGATAAATAGGAAAATTAAAAATTATAGAT
1 ACAATTAGTAGGATAAATAGGAAAATTAAAAATTATAGAT
48203056 AC
1 AC
48203058 GATTTCTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.54, C:0.05, G:0.15, T:0.27
Consensus pattern (40 bp):
ACAATTAGTAGGATAAATAGGAAAATTAAAAATTATAGAT
Found at i:48205180 original size:24 final size:23
Alignment explanation
Indices: 48205098--48205185 Score: 65
Period size: 24 Copynumber: 3.7 Consensus size: 23
48205088 CCCGATTATG
*
48205098 GCTCT-TATGGGCTTCCCGTTATATA
1 GCTCTGTATGAGCTTCCCG--ATA-A
* *
48205123 GCTCGGT-TAAGCTTCCCGATAA
1 GCTCTGTATGAGCTTCCCGATAA
*
48205145 GCTCTTTATGAGCTTCCCGA-AA
1 GCTCTGTATGAGCTTCCCGATAA
*
48205167 TGGCTCTGTGTGAGCTTCC
1 --GCTCTGTATGAGCTTCC
48205186 TGTTACAAGG
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
22 8 0.16
23 14 0.27
24 15 0.29
25 13 0.25
26 1 0.02
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (23 bp):
GCTCTGTATGAGCTTCCCGATAA
Found at i:48206438 original size:30 final size:30
Alignment explanation
Indices: 48206404--48206470 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
48206394 GTCACATGGT
*
48206404 CGTGTGAGTCACACGGCCTACCCACACGGG
1 CGTGTGAGTCACACGGCCTACCCACACGGC
* *
48206434 CGTGTGAGTCACACGGCCTATCCACATGGC
1 CGTGTGAGTCACACGGCCTACCCACACGGC
48206464 CGTGTGA
1 CGTGTGA
48206471 CCCCTGTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.18
Consensus pattern (30 bp):
CGTGTGAGTCACACGGCCTACCCACACGGC
Found at i:48219107 original size:24 final size:24
Alignment explanation
Indices: 48219075--48219353 Score: 486
Period size: 24 Copynumber: 11.6 Consensus size: 24
48219065 TATCTCAAAT
*
48219075 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
48219099 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48219123 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
48219147 GCACTATGTGTGCGATTTGCTATG
1 GCACTATGTGTGCGATTTACTATG
*
48219171 GCACTATGTGTCCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48219195 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
48219219 GCACTATGTGTGCGATTTGCTATG
1 GCACTATGTGTGCGATTTACTATG
48219243 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48219267 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
48219291 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
48219315 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
48219339 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
48219354 ACATAATAAG
Statistics
Matches: 245, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 245 1.00
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:48227082 original size:24 final size:24
Alignment explanation
Indices: 48227043--48227319 Score: 461
Period size: 24 Copynumber: 11.6 Consensus size: 24
48227033 TATCTCAAAT
*
48227043 GCACTATG-GTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
48227066 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48227090 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
48227114 GCACTATGTGTGCGATTTGCTATG
1 GCACTATGTGTGCGATTTACTATG
48227138 GCACTATGTGT-CGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48227161 GCACTATGTGTGCGA-TTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
48227184 GCACTATGTGTGCGATTTGCTATG
1 GCACTATGTGTGCGATTTACTATG
48227208 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48227232 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
48227256 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
48227280 GCACTATGTGTGCGATTTGCATATA
1 GCACTATGTGTGCGATTTAC-TATG
*
48227305 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
48227320 ACATAATAAG
Statistics
Matches: 242, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
23 53 0.22
24 171 0.71
25 18 0.07
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:48227207 original size:142 final size:143
Alignment explanation
Indices: 48227043--48227319 Score: 468
Period size: 142 Copynumber: 1.9 Consensus size: 143
48227033 TATCTCAAAT
48227043 GCACTATGGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
1 GCACTATGGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
* * *
48227108 ACTATGGCACTATGTGTGCGATTTGCTATGGCACTATGTGT-CGATTTAC-TATGGCACTATGTG
66 ACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACATATAGCACTATGTG
48227171 TGCGATTACTATG
131 TGCGATTACTATG
**
48227184 GCACTATGTGTGCGATTTGCTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATT
1 GCACTATG-GTGCGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATT
* *
48227249 TACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTGCATATAGCTCTATGT
65 TACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACATATAGCACTATGT
48227314 GTGCGA
130 GTGCGA
48227320 ACATAATAAG
Statistics
Matches: 126, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
141 8 0.06
142 94 0.75
143 7 0.06
144 17 0.13
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (143 bp):
GCACTATGGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
ACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACATATAGCACTATGTG
TGCGATTACTATG
Found at i:48227340 original size:24 final size:24
Alignment explanation
Indices: 48227256--48227341 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 24
48227246 ATTTACTATG
** *
48227256 GCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGAACATAATA-A
*
48227280 GCACTATGTGTGCGATTTGCAT-AT-A
1 GCACTATGTGTGCGA---ACATAATAA
*
48227305 GCTCTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGAACATAATAA
48227329 GCACTATGTGTGC
1 GCACTATGTGTGC
48227342 CACATTCGGT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
22 3 0.06
23 2 0.04
24 27 0.55
25 15 0.31
27 1 0.02
28 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAACATAATAA
Found at i:48234471 original size:40 final size:40
Alignment explanation
Indices: 48234363--48234612 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
48234353 CGGGATTTAA
* * * * *
48234363 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
48234403 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48234443 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48234483 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48234523 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
48234563 CCGGATATATCAACTCGCACGAATGCCTTTGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48234603 CCGGATATAT
1 CCGGATATAT
48234613 TTCCAATGTT
Statistics
Matches: 192, Mismatches: 16, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 191 0.99
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:48242459 original size:24 final size:24
Alignment explanation
Indices: 48242432--48242638 Score: 360
Period size: 24 Copynumber: 8.6 Consensus size: 24
48242422 CTTATTATGT
* * *
48242432 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
48242456 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
48242480 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
48242504 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
48242528 TCGCACACATAGTGCCATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
48242552 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
48242576 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
48242600 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
48242624 TCGCACACATAGTGC
1 TCGCACACATAGTGC
48242639 ATTTGAGATA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:48258786 original size:16 final size:16
Alignment explanation
Indices: 48258765--48258797 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
48258755 AGTTATGAGT
48258765 TAGCCTTTCATATGAA
1 TAGCCTTTCATATGAA
48258781 TAGCCTTTCATATGAA
1 TAGCCTTTCATATGAA
48258797 T
1 T
48258798 GTTTGATGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (16 bp):
TAGCCTTTCATATGAA
Found at i:48264347 original size:68 final size:67
Alignment explanation
Indices: 48264225--48264390 Score: 181
Period size: 68 Copynumber: 2.4 Consensus size: 67
48264215 ACATGGGATC
* ** *
48264225 ATAATGTGTAAGACCATAGCTAGGATACGGAAACAAATGGAGTTTTGCAAGACATTAAACCTAGG
1 ATAATGTGTAAGACCATAGCTAGGATA-TGAAACAAATGGAGTTCCGCAAGACATTAAACATAGG
48264290 TTA
65 TTA
* * * *
48264293 ATAATGTGTAAGACCATAGCTAGGCTATGACAACATATGGAG-TCCGCTAGGACATTAAACATGG
1 ATAATGTGTAAGACCATAGCTAGGATATGA-AACAAATGGAGTTCCGC-AAGACATTAAACATAG
*
48264357 GTTC
64 GTTA
* * * *
48264361 GTACTGTGTAAGGCCATAGCTGGGATATGA
1 ATAATGTGTAAGACCATAGCTAGGATATGA
48264391 TAATAGAAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
67 5 0.06
68 77 0.94
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (67 bp):
ATAATGTGTAAGACCATAGCTAGGATATGAAACAAATGGAGTTCCGCAAGACATTAAACATAGGT
TA
Found at i:48270882 original size:20 final size:20
Alignment explanation
Indices: 48270857--48270903 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
48270847 ATTTTGATAT
*
48270857 ACATGATTTGCATGATATGC
1 ACATGATATGCATGATATGC
*
48270877 ACATGATATGGATGATATGC
1 ACATGATATGCATGATATGC
48270897 ACATGAT
1 ACATGAT
48270904 GTATTCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:48270883 original size:11 final size:11
Alignment explanation
Indices: 48270867--48270903 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
48270857 ACATGATTTG
48270867 CATGATATGCA
1 CATGATATGCA
48270878 CATGATATG--
1 CATGATATGCA
*
48270887 GATGATATGCA
1 CATGATATGCA
48270898 CATGAT
1 CATGAT
48270904 GTATTCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.30
Consensus pattern (11 bp):
CATGATATGCA
Found at i:48270991 original size:26 final size:26
Alignment explanation
Indices: 48270962--48271021 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
48270952 AATGGCTATG
* *
48270962 CCCCAGTTTACCGAAACGGGCTTTTA
1 CCCCAGTTTACCAAAAAGGGCTTTTA
* *
48270988 CCCCAGTTTATCAAAAAGGGCTTTTG
1 CCCCAGTTTACCAAAAAGGGCTTTTA
*
48271014 CCCTAGTT
1 CCCCAGTT
48271022 ATTAAAAGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (26 bp):
CCCCAGTTTACCAAAAAGGGCTTTTA
Found at i:48271290 original size:29 final size:31
Alignment explanation
Indices: 48271236--48271319 Score: 129
Period size: 30 Copynumber: 2.8 Consensus size: 31
48271226 TATCGTTACA
*
48271236 GTAAAGGCTTCGGCCTAGTGATATGAATAAT
1 GTAAAGGCTTCGGCCCAGTGATATGAATAAT
48271267 G-AAAGGCTTC-GCCCAGTGATATGAATAAT
1 GTAAAGGCTTCGGCCCAGTGATATGAATAAT
*
48271296 GTGAAGGCTTCGGCCCAGT-ATATG
1 GTAAAGGCTTCGGCCCAGTGATATG
48271320 CTGAGATTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
29 19 0.39
30 22 0.45
31 8 0.16
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (31 bp):
GTAAAGGCTTCGGCCCAGTGATATGAATAAT
Found at i:48279137 original size:40 final size:39
Alignment explanation
Indices: 48278909--48279130 Score: 267
Period size: 40 Copynumber: 5.7 Consensus size: 39
48278899 TTCAATGATG
* *
48278909 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
48278949 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
48278988 TTCC-GGCTAAG-CCCGAAGG-ATTTGTGCAAGTTACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
48279025 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
48279065 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
48279105 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48279131 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 12, Indels: 18
0.84 0.06 0.09
Matches are distributed among these distances:
37 21 0.13
38 22 0.14
39 32 0.20
40 78 0.48
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:48286077 original size:40 final size:40
Alignment explanation
Indices: 48286032--48286199 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
48286022 CGGAATATAA
48286032 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
48286072 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48286112 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
48286152 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48286192 CCGGATAT
1 CCGGATAT
48286200 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48288033 original size:40 final size:40
Alignment explanation
Indices: 48287914--48288077 Score: 211
Period size: 40 Copynumber: 4.1 Consensus size: 40
48287904 CGGATGATAA
* * *
48287914 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * ****
48287954 CCGGGCTATGACCCGAAGGCATTTATGCTAGCAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
48287994 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
48288034 TCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
48288074 CCGG
1 CCGG
48288078 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:48294849 original size:17 final size:18
Alignment explanation
Indices: 48294812--48294849 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
48294802 CACTTTTTTT
48294812 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
48294831 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
48294848 TT
1 TT
48294850 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:48299286 original size:49 final size:49
Alignment explanation
Indices: 48299219--48299764 Score: 833
Period size: 49 Copynumber: 11.1 Consensus size: 49
48299209 TTTACCACAT
* *
48299219 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48299268 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48299317 ATATATATACACTTTCACA-T--T--CAT----CA-TAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
48299356 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48299405 ATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48299456 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48299505 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48299554 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48299603 ATATATATACATTTTCACATTCATCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACA---T----TT--TCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
48299661 CTATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48299710 ATATATATACATTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48299759 ATATAT
1 ATATAT
48299765 TATTATGTAC
Statistics
Matches: 461, Mismatches: 15, Indels: 42
0.89 0.03 0.08
Matches are distributed among these distances:
39 32 0.07
40 3 0.01
42 1 0.00
44 5 0.01
46 1 0.00
48 3 0.01
49 319 0.69
51 49 0.11
52 1 0.00
56 2 0.00
58 45 0.10
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:48299336 original size:18 final size:18
Alignment explanation
Indices: 48299313--48299375 Score: 67
Period size: 18 Copynumber: 3.3 Consensus size: 18
48299303 TTAGGCCTTA
48299313 TCACATATATATACACTT
1 TCACATATATATACACTT
48299331 TCACAT-TCATCATAGGC-CTT
1 TCACATAT-AT-ATA--CACTT
48299351 ATCACATATATATACACTT
1 -TCACATATATATACACTT
48299370 TCACAT
1 TCACAT
48299376 TCATCACGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
17 1 0.03
18 15 0.39
19 6 0.16
20 6 0.16
21 9 0.24
22 1 0.03
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (18 bp):
TCACATATATATACACTT
Found at i:48299348 original size:39 final size:39
Alignment explanation
Indices: 48299304--48299381 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
48299294 CATCGGCCAT
48299304 TAGGCCTTATCACATATATATACACTTTCACATTCATCA
1 TAGGCCTTATCACATATATATACACTTTCACATTCATCA
48299343 TAGGCCTTATCACATATATATACACTTTCACATTCATCA
1 TAGGCCTTATCACATATATATACACTTTCACATTCATCA
48299382 CGTCGGCCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (39 bp):
TAGGCCTTATCACATATATATACACTTTCACATTCATCA
Found at i:48299357 original size:21 final size:20
Alignment explanation
Indices: 48299304--48299364 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 20
48299294 CATCGGCCAT
48299304 TAGGCCTTATCACATATATA
1 TAGGCCTTATCACATATATA
48299324 TA--CACTT-TCACAT-TCATCA
1 TAGGC-CTTATCACATAT-AT-A
48299343 TAGGCCTTATCACATATATA
1 TAGGCCTTATCACATATATA
48299363 TA
1 TA
48299365 CACTTTCACA
Statistics
Matches: 34, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
17 1 0.03
18 9 0.26
19 6 0.18
20 8 0.24
21 9 0.26
22 1 0.03
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (20 bp):
TAGGCCTTATCACATATATA
Found at i:48299415 original size:188 final size:189
Alignment explanation
Indices: 48299199--48299735 Score: 815
Period size: 188 Copynumber: 2.8 Consensus size: 189
48299189 ATTCACATTA
* * * *
48299199 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
48299264 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
66 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
48299329 TTTCACATTCATCA-TAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCG
131 TTTCACATTCATCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
48299387 GCCATTAGGCCTTATCACATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
48299452 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
66 TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
*
48299517 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACA
131 TTTCACA-T--T--CAT----CATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
48299582 TCG
187 TCG
*
48299585 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATTCATCACATCGGCCATTA
1 GCCATTAGGCCTTATCACATATATAT--A--TACAC-TT--TCACATTCATCACATCGGCCATTA
* * *
48299650 GGCCTTATCACCTATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATA
59 GGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
48299715 TATACATTTTCACATTCATCA
124 TATACACTTTCACATTCATCA
48299736 CATCAGCCAT
Statistics
Matches: 319, Mismatches: 13, Indels: 26
0.89 0.04 0.07
Matches are distributed among these distances:
188 132 0.41
189 1 0.00
191 1 0.00
193 3 0.01
196 2 0.01
197 2 0.01
198 68 0.21
200 4 0.01
202 4 0.01
203 2 0.01
204 1 0.00
205 99 0.31
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (189 bp):
GCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
TTTCACATTCATCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:48299630 original size:107 final size:107
Alignment explanation
Indices: 48299519--48299738 Score: 413
Period size: 107 Copynumber: 2.1 Consensus size: 107
48299509 ATATACACTT
*
48299519 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
48299584 GGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
66 GGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
* *
48299626 TCACATTCATCACATCGGCCATTAGGCCTTATCACCTATATATACACTTTCACATTCATCACGTC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
48299691 GGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
66 GGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
48299733 TCACAT
1 TCACAT
48299739 CAGCCATTAG
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 110 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (107 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
Found at i:48299705 original size:156 final size:147
Alignment explanation
Indices: 48299343--48299764 Score: 718
Period size: 156 Copynumber: 2.8 Consensus size: 147
48299333 ACATTCATCA
48299343 TAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATA
1 TAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC--A
48299408 TATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
64 TATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCA
48299473 CATTCATCACATCGGCCAT
129 CATTCATCACATCGGCCAT
*
48299492 TAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATA
48299557 TATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACA
66 TATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA---T----
48299622 TTCATCACATTCATCACATCGGCCAT
124 TT--TCACATTCATCACATCGGCCAT
*
48299648 TAGGCCTTATCACCTATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATA
1 TAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATA
*
48299713 TATATACATTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATAT
66 TATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
48299765 TATTATGTAC
Statistics
Matches: 260, Mismatches: 4, Indels: 11
0.95 0.01 0.04
Matches are distributed among these distances:
147 60 0.23
149 61 0.23
150 1 0.00
154 2 0.01
156 136 0.52
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (147 bp):
TAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATA
TATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACA
TTCATCACATCGGCCAT
Found at i:48303406 original size:40 final size:40
Alignment explanation
Indices: 48303357--48303588 Score: 383
Period size: 40 Copynumber: 5.8 Consensus size: 40
48303347 CCAGCATGAT
* * * *
48303357 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
* * *
48303397 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
48303437 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
*
48303477 TGCTCTTTGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
*
48303517 TGCTCTTCGAAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
48303557 TGCTCTTCGGAACTTAGTCCGGATACATCATT
1 TGCTCTTCGGAACTTAGTCCGGATACATCATT
48303589 CTCAATTCTC
Statistics
Matches: 180, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 180 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
Found at i:48305512 original size:36 final size:36
Alignment explanation
Indices: 48305465--48305550 Score: 129
Period size: 36 Copynumber: 2.3 Consensus size: 36
48305455 TACGAAGTCT
48305465 TACCCGGACATAATATCCACACGT-GTCATCGGGTC
1 TACCCGGACATAATATCCACACGTAGTCATCGGGTC
*
48305500 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATATCCACACGTAGTCATCGGGTC
48305537 TCACCCGGAACATA
1 T-ACCCGG-ACATA
48305551 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
36 24 0.52
37 17 0.37
38 5 0.11
ACGTcount: A:0.27, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATATCCACACGTAGTCATCGGGTC
Found at i:48305686 original size:49 final size:49
Alignment explanation
Indices: 48305619--48306115 Score: 744
Period size: 49 Copynumber: 10.1 Consensus size: 49
48305609 TTTACCACAT
*
48305619 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
48305668 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTGTCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48305717 ATATATATACACTTTCACATTCAT--CA-----C---AGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48305756 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48305805 ATATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48305856 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48305905 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48305954 ATATATATACATTTTCACATTCATCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATAT--A----CAC-TT--TCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48306012 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
48306061 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48306110 ATATAT
1 ATATAT
48306116 TATTATGTAC
Statistics
Matches: 413, Mismatches: 14, Indels: 42
0.88 0.03 0.09
Matches are distributed among these distances:
39 35 0.08
41 1 0.00
42 1 0.00
46 1 0.00
47 2 0.00
49 273 0.66
51 50 0.12
52 3 0.01
55 2 0.00
56 3 0.01
58 42 0.10
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:48305749 original size:39 final size:39
Alignment explanation
Indices: 48305705--48305782 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
48305695 ATCGGCCATT
*
48305705 AGGCCTTGTCACATATATATACACTTTCACATTCATCAC
1 AGGCCTTATCACATATATATACACTTTCACATTCATCAC
48305744 AGGCCTTATCACATATATATACACTTTCACATTCATCAC
1 AGGCCTTATCACATATATATACACTTTCACATTCATCAC
48305783 GTCGGCCATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.33
Consensus pattern (39 bp):
AGGCCTTATCACATATATATACACTTTCACATTCATCAC
Found at i:48306008 original size:107 final size:107
Alignment explanation
Indices: 48305870--48306089 Score: 413
Period size: 107 Copynumber: 2.1 Consensus size: 107
48305860 ATATACACTT
*
48305870 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
48305935 GGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
66 GGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
* *
48305977 TCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
48306042 GGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
66 GGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
48306084 TCACAT
1 TCACAT
48306090 CGGCCATTAG
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 110 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (107 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
Found at i:48306046 original size:156 final size:149
Alignment explanation
Indices: 48305744--48306115 Score: 636
Period size: 156 Copynumber: 2.4 Consensus size: 149
48305734 CATTCATCAC
* *
48305744 AGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATAT
1 AGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
48305809 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
66 ATATATACATTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
48305874 ATTCATCACATCGGCCATT
131 ATTCATCACATCGGCCATT
48305893 AGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 AGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
48305958 ATATACATTTTCACATTCATCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACA
66 ATAT--A---T-ACATT-ATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
*
48306023 CTTTCACATTCATCACGTCGGCCATT
124 CTTTCACATTCATCACATCGGCCATT
48306049 AGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 AGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
48306114 AT
66 AT
48306116 TATTATGTAC
Statistics
Matches: 211, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
149 67 0.32
151 1 0.00
154 1 0.00
155 5 0.02
156 137 0.65
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (149 bp):
AGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
ATATATACATTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
ATTCATCACATCGGCCATT
Found at i:48311673 original size:29 final size:29
Alignment explanation
Indices: 48311612--48311710 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
48311602 ACAGTAAGTC
48311612 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
*
48311640 TGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
48311669 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
48311697 CGCACACTTAGTGC
1 CGCACACTTAGTGC
48311711 CAATCTCATT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
28 33 0.49
29 33 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:48317201 original size:40 final size:40
Alignment explanation
Indices: 48317050--48317213 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
48317040 CAGATGATAA
* * *
48317050 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
48317090 CCGGGCTATGACCCGAAGGCATTTATGCTAG-CGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
* *
48317130 TCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTCCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
48317170 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
48317210 CCGG
1 CCGG
48317214 TTAAATCCCA
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:48321387 original size:40 final size:40
Alignment explanation
Indices: 48321302--48321452 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
48321292 AATTGAATGA
* * *
48321302 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
48321342 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
48321383 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
48321422 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
48321453 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:48321466 original size:40 final size:40
Alignment explanation
Indices: 48321339--48321468 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
48321329 ATGCTGGAAA
* * * *
48321339 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
48321379 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
48321419 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
48321459 TTATATCCGG
1 TTATATCCGG
48321469 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:48329408 original size:40 final size:40
Alignment explanation
Indices: 48329323--48329473 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
48329313 AATTGAATGA
* * *
48329323 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
48329363 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
48329404 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
48329443 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
48329474 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:48329487 original size:40 final size:40
Alignment explanation
Indices: 48329360--48329489 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
48329350 ATGCTGGAAA
* * * *
48329360 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
48329400 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
48329440 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
48329480 TTATATCCGG
1 TTATATCCGG
48329490 TTATTCCGAA
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:48335387 original size:24 final size:24
Alignment explanation
Indices: 48335355--48335621 Score: 405
Period size: 24 Copynumber: 11.6 Consensus size: 24
48335345 TATCTCAAAT
*
48335355 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
48335379 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48335403 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48335427 GCACTATGTGTGCGATTT-CTATG
1 GCACTATGTGTGCGATTTACTATG
48335450 G--C-A--TGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48335469 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48335493 GCACTATGTGTGCGATTT-CTATG
1 GCACTATGTGTGCGATTTACTATG
48335516 GCACTA----TGCGATTTACTAT-
1 GCACTATGTGTGCGATTTACTATG
48335535 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
48335559 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
48335583 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
48335607 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
48335622 ACATAATAAG
Statistics
Matches: 227, Mismatches: 4, Indels: 24
0.89 0.02 0.09
Matches are distributed among these distances:
18 10 0.04
19 20 0.09
20 5 0.02
21 2 0.01
22 1 0.00
23 30 0.13
24 159 0.70
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:48335465 original size:66 final size:67
Alignment explanation
Indices: 48335355--48335621 Score: 376
Period size: 66 Copynumber: 3.9 Consensus size: 67
48335345 TATCTCAAAT
*
48335355 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATT-TCTATGGCAC----TGTGCGATTTACTATGGCACTATGTGTGCGATT
48335420 TACTATG
61 TACTATG
48335427 GCACTATGTGTGCGATTTCTATGGCA-TGTGCGATTTACTATGGCACTATGTGTGCGATTTACTA
1 GCACTATGTGTGCGATTTCTATGGCACTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTA
48335491 TG
66 TG
*
48335493 GCACTATGTGTGCGATTTCTATGGCACTATGCGATTTACTAT-GCACTATGTGTGCGATTTACTA
1 GCACTATGTGTGCGATTTCTATGGCACTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTA
48335557 TG
66 TG
* * * *
48335559 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGA
1 GCACTATGTGTGCGATTT-CTATGGCAC----TGTGCGATTTACTATGGCACTATGTGTGCGA
48335622 ACATAATAAG
Statistics
Matches: 182, Mismatches: 6, Indels: 14
0.90 0.03 0.07
Matches are distributed among these distances:
66 108 0.59
67 22 0.12
71 21 0.12
72 31 0.17
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (67 bp):
GCACTATGTGTGCGATTTCTATGGCACTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTA
TG
Found at i:48335468 original size:90 final size:93
Alignment explanation
Indices: 48335353--48335621 Score: 401
Period size: 90 Copynumber: 2.9 Consensus size: 93
48335343 GCTATCTCAA
*
48335353 ATGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA
1 ATGCACTA-GTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA
48335418 TTTACTATGGCACTATGTGTGCGATTT-CT
65 TTT-CTATGGCACTATGTGTGCGATTTACT
*
48335447 ATG-GC-A-TGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAT
1 ATGCACTAGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAT
48335509 TTCTATGGCACTA----TGCGATTTACT
66 TTCTATGGCACTATGTGTGCGATTTACT
*
48335533 ATGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGA
1 ATGCACTA-GTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA
* *
48335598 TTTGCTATAGCTCTATGTGTGCGA
65 TTT-CTATGGCACTATGTGTGCGA
48335622 ACATAATAAG
Statistics
Matches: 159, Mismatches: 6, Indels: 19
0.86 0.03 0.10
Matches are distributed among these distances:
85 8 0.05
86 5 0.03
87 1 0.01
88 1 0.01
89 11 0.07
90 114 0.72
91 9 0.06
92 1 0.01
93 1 0.01
94 3 0.02
95 5 0.03
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (93 bp):
ATGCACTAGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAT
TTCTATGGCACTATGTGTGCGATTTACT
Found at i:48335634 original size:48 final size:48
Alignment explanation
Indices: 48335453--48335643 Score: 189
Period size: 48 Copynumber: 4.1 Consensus size: 48
48335443 TTCTATGGCA
* ** * *
48335453 TGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATG
1 TGTGCGATTTACTATAGCACTATGTGTGCGACATAATATAGCACTATG
* ** *
48335501 TGTGCGATTT-CTATGGCACTA----TGCGATTTACTAT-GCACTATG
1 TGTGCGATTTACTATAGCACTATGTGTGCGACATAATATAGCACTATG
* ** *
48335543 TGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATAGCACTATG
1 TGTGCGATTTACTATAGCACTATGTGTGCGACATAATATAGCACTATG
* *
48335591 TGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-AGCACTATG
1 TGTGCGATTTACTATAGCACTATGTGTGCG-ACATAATATAGCACTATG
48335639 TGTGC
1 TGTGC
48335644 CACATTCGGT
Statistics
Matches: 130, Mismatches: 6, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
42 18 0.14
43 24 0.18
47 24 0.18
48 59 0.45
49 5 0.04
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.37
Consensus pattern (48 bp):
TGTGCGATTTACTATAGCACTATGTGTGCGACATAATATAGCACTATG
Found at i:48343348 original size:24 final size:24
Alignment explanation
Indices: 48343316--48343592 Score: 477
Period size: 24 Copynumber: 11.6 Consensus size: 24
48343306 TATCTCAAAT
*
48343316 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
48343340 GCACTATGTGTGCGATTTACTAT-
1 GCACTATGTGTGCGATTTACTATG
48343363 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
48343387 GCACTATGTGTGCGATTTGCTATG
1 GCACTATGTGTGCGATTTACTATG
48343411 GCACTATGTGT-CGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48343434 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
48343458 GCACTATGTGTGCGATTTGCTATG
1 GCACTATGTGTGCGATTTACTATG
48343482 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
48343506 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
48343530 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
48343554 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
48343578 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
48343593 ACATAATAAG
Statistics
Matches: 243, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
23 45 0.19
24 198 0.81
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:48353198 original size:14 final size:14
Alignment explanation
Indices: 48353179--48353216 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
48353169 AAAAAAAACT
48353179 AAATTGAGCTAACC
1 AAATTGAGCTAACC
48353193 AAATTGAGCTAACC
1 AAATTGAGCTAACC
48353207 AAATTGAGCT
1 AAATTGAGCT
48353217 TGAAACTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (14 bp):
AAATTGAGCTAACC
Found at i:48358036 original size:43 final size:44
Alignment explanation
Indices: 48357946--48358167 Score: 276
Period size: 43 Copynumber: 5.2 Consensus size: 44
48357936 AAGTTGACAA
* *
48357946 AATGCCACAGAGGCCATATTAG-A-ATACCACAAAGGTTAACAG
1 AATGCCACAAAGGCCATATTAGAATATACCACAAAGGCTAACAG
* *
48357988 AATGCCACAAAGGCCAAATTAGAATATACC-CAAAGGCTAACAA
1 AATGCCACAAAGGCCATATTAGAATATACCACAAAGGCTAACAG
* * * *
48358031 AATGCCACAAAGGCAATATCAG--CATACCAAAAAGGCTAACAG
1 AATGCCACAAAGGCCATATTAGAATATACCACAAAGGCTAACAG
* *
48358073 AATGCCAAAAAGGCCATATTAGAATATACC-CAAAGGCTAATAG
1 AATGCCACAAAGGCCATATTAGAATATACCACAAAGGCTAACAG
* * **
48358116 AATGCCACAAAGGCCATATCAGAATACACCACAAAGGCTAGTAG
1 AATGCCACAAAGGCCATATTAGAATATACCACAAAGGCTAACAG
48358160 AATGCCAC
1 AATGCCAC
48358168 CCGGACACCC
Statistics
Matches: 154, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
41 5 0.03
42 50 0.32
43 69 0.45
44 30 0.19
ACGTcount: A:0.45, C:0.23, G:0.17, T:0.15
Consensus pattern (44 bp):
AATGCCACAAAGGCCATATTAGAATATACCACAAAGGCTAACAG
Found at i:48358043 original size:20 final size:20
Alignment explanation
Indices: 48357966--48358167 Score: 93
Period size: 20 Copynumber: 9.5 Consensus size: 20
48357956 AGGCCATATT
* *
48357966 AGAATACCACAAAGGTTAAC
1 AGAATGCCACAAAGGCTAAC
* *
48357986 AGAATGCCACAAAGGCCAAATT
1 AGAATGCCACAAAGG-CTAA-C
*
48358008 AGAATATACC-CAAAGGCTAAC
1 AG-A-ATGCCACAAAGGCTAAC
* *
48358029 AAAATGCCACAAAGGCAATATC
1 AGAATGCCACAAAGGC--TAAC
* * *
48358051 AGCATACCAAAAAGGCTAAC
1 AGAATGCCACAAAGGCTAAC
* **
48358071 AGAATGCCAAAAAGGCCATATT
1 AGAATGCCACAAAGG-C-TAAC
* *
48358093 AGAATATACC-CAAAGGCTAAT
1 AG-A-ATGCCACAAAGGCTAAC
*
48358114 AGAATGCCACAAAGGCCATATC
1 AGAATGCCACAAAGG-C-TAAC
* **
48358136 AGAATACACCACAAAGGCTAGT
1 AGAAT--GCCACAAAGGCTAAC
48358158 AGAATGCCAC
1 AGAATGCCAC
48358168 CCGGACACCC
Statistics
Matches: 137, Mismatches: 29, Indels: 32
0.69 0.15 0.16
Matches are distributed among these distances:
19 8 0.06
20 49 0.36
21 10 0.07
22 39 0.28
23 14 0.10
24 17 0.12
ACGTcount: A:0.47, C:0.23, G:0.16, T:0.14
Consensus pattern (20 bp):
AGAATGCCACAAAGGCTAAC
Found at i:48358058 original size:85 final size:85
Alignment explanation
Indices: 48357942--48358167 Score: 326
Period size: 85 Copynumber: 2.6 Consensus size: 85
48357932 CGCAAAGTTG
* * *
48357942 ACAAAATGCCACAGAGGCCATATTAGAATACCACAAAGGTTAACAGAATGCCACAAAGGCCAAAT
1 ACAAAATGCCACAAAGGCCATATCAGAATACCACAAAGGCTAACAGAATGCCACAAAGGCCAAAT
48358007 TAGAATATACCCAAAGGCTA
66 TAGAATATACCCAAAGGCTA
* * * * *
48358027 ACAAAATGCCACAAAGGCAATATCAGCATACCAAAAAGGCTAACAGAATGCCAAAAAGGCCATAT
1 ACAAAATGCCACAAAGGCCATATCAGAATACCACAAAGGCTAACAGAATGCCACAAAGGCCAAAT
48358092 TAGAATATACCCAAAGGCTA
66 TAGAATATACCCAAAGGCTA
* * **
48358112 ATAGAATGCCACAAAGGCCATATCAGAATACACCACAAAGGCTAGTAGAATGCCAC
1 ACAAAATGCCACAAAGGCCATATCAGAAT--ACCACAAAGGCTAACAGAATGCCAC
48358168 CCGGACACCC
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
85 102 0.83
87 21 0.17
ACGTcount: A:0.46, C:0.23, G:0.16, T:0.15
Consensus pattern (85 bp):
ACAAAATGCCACAAAGGCCATATCAGAATACCACAAAGGCTAACAGAATGCCACAAAGGCCAAAT
TAGAATATACCCAAAGGCTA
Found at i:48358161 original size:22 final size:20
Alignment explanation
Indices: 48358092--48358162 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 20
48358082 AAGGCCATAT
48358092 TAGAATATACC-CAAAGGCTAA
1 TAGAATA-ACCACAAAGGCT-A
*
48358113 TAGAAT-GCCACAAAGGCCATA
1 TAGAATAACCACAAAGG-C-TA
48358134 TCAGAATACACCACAAAGGCTA
1 T-AGAATA-ACCACAAAGGCTA
48358156 GTAGAAT
1 -TAGAAT
48358163 GCCACCCGGA
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
19 2 0.05
20 6 0.15
21 9 0.22
22 13 0.32
23 2 0.05
24 9 0.22
ACGTcount: A:0.45, C:0.21, G:0.17, T:0.17
Consensus pattern (20 bp):
TAGAATAACCACAAAGGCTA
Found at i:48365905 original size:32 final size:33
Alignment explanation
Indices: 48365869--48365941 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 33
48365859 AGCCCTGCCG
* *
48365869 TGGTCTTT-TGTTCGCA-TGCCATAACCCAGTTA
1 TGGTCTTTCTATTCG-ATTGCCATAACCCAGTCA
*
48365901 TGGTCTTTCTATTCGATTTGCCATAGCCCAGTCA
1 TGGTCTTTCTATTCGA-TTGCCATAACCCAGTCA
48365935 TGGTCTT
1 TGGTCTT
48365942 ATTCGGCAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 9 0.26
33 5 0.14
34 21 0.60
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (33 bp):
TGGTCTTTCTATTCGATTGCCATAACCCAGTCA
Found at i:48367964 original size:40 final size:40
Alignment explanation
Indices: 48367800--48367966 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
48367790 AAATTGAATG
* * * **
48367800 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
48367839 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
48367879 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
48367919 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
48367959 ATATCCGG
1 ATATCCGG
48367967 TTATATTCCG
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:48369502 original size:31 final size:31
Alignment explanation
Indices: 48369467--48369525 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
48369457 GGAATATTTT
48369467 CACTTTAACCCCTAAACTTTCACACTTTTAA
1 CACTTTAACCCCTAAACTTTCACACTTTTAA
48369498 CACTTTAACCCCTAAACTTTCACACTTT
1 CACTTTAACCCCTAAACTTTCACACTTT
48369526 CACACAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.36
Consensus pattern (31 bp):
CACTTTAACCCCTAAACTTTCACACTTTTAA
Found at i:48370868 original size:21 final size:21
Alignment explanation
Indices: 48370844--48370883 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
48370834 CAATTTCTGT
48370844 CTATC-TGAAGTTACTTTCAAA
1 CTATCATGAA-TTACTTTCAAA
*
48370865 CTATCATGTATTACTTTCA
1 CTATCATGAATTACTTTCA
48370884 CTTTCTCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.42
Consensus pattern (21 bp):
CTATCATGAATTACTTTCAAA
Found at i:48373081 original size:39 final size:39
Alignment explanation
Indices: 48373027--48373106 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
48373017 CTAGGGAGAA
48373027 AAACTTGGTCTAGCAAAACCCTTATCTGTCAACTCTTAC
1 AAACTTGGTCTAGCAAAACCCTTATCTGTCAACTCTTAC
48373066 AAACTTGGTCTAGCAAAACCCTTATCTGTCAACTCTTAC
1 AAACTTGGTCTAGCAAAACCCTTATCTGTCAACTCTTAC
48373105 AA
1 AA
48373107 CTAAGCTTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.30
Consensus pattern (39 bp):
AAACTTGGTCTAGCAAAACCCTTATCTGTCAACTCTTAC
Found at i:48387508 original size:39 final size:40
Alignment explanation
Indices: 48387330--48387512 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
48387320 CCGCACCAAG
* * * * * * * *
48387330 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
48387370 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
48387410 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
48387450 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
48387489 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
48387513 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Done.