Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 157 of 433
Found at i:49098892 original size:3 final size:3
Alignment explanation
Indices: 49098884--49098923 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
49098874 ACTTAATAAG
49098884 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
49098924 CTTTTCAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:49113433 original size:20 final size:19
Alignment explanation
Indices: 49113403--49113522 Score: 87
Period size: 20 Copynumber: 6.1 Consensus size: 19
49113393 ATAAAGATGA
*
49113403 AACAAATTTAAATGGATTGT
1 AACAGATTTAAAT-GATTGT
* * *
49113423 AGCAGATTTAAATAATTTGA
1 AACAGATTTAAATGA-TTGT
*
49113443 AACAGATTTAAATCATTGT
1 AACAGATTTAAATGATTGT
* *
49113462 AACTGATTTAAATTGCTTGT
1 AACAGATTTAAA-TGATTGT
* * *
49113482 AACTGATTTAAATCAATTGA
1 AACAGATTTAAAT-GATTGT
* *
49113502 AACATATTTAGATCGATTGT
1 AACAGATTTAAAT-GATTGT
49113522 A
1 A
49113523 GCATATTTGG
Statistics
Matches: 79, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
19 16 0.20
20 63 0.80
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (19 bp):
AACAGATTTAAATGATTGT
Found at i:49113502 original size:59 final size:60
Alignment explanation
Indices: 49113408--49113522 Score: 153
Period size: 59 Copynumber: 1.9 Consensus size: 60
49113398 GATGAAACAA
*
49113408 ATTTAAATGGATTGTAGCAGATTTAAATAATTTGAAACAGATTTAAATC-ATTGTAACTG
1 ATTTAAATGGATTGTAACAGATTTAAATAATTTGAAACAGATTTAAATCGATTGTAACTG
* * * * *
49113467 ATTTAAATTGCTTGTAACTGATTTAAATCAA-TTGAAACATATTTAGATCGATTGTA
1 ATTTAAATGGATTGTAACAGATTTAAAT-AATTTGAAACAGATTTAAATCGATTGTA
49113523 GCATATTTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 40 0.83
60 8 0.17
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (60 bp):
ATTTAAATGGATTGTAACAGATTTAAATAATTTGAAACAGATTTAAATCGATTGTAACTG
Found at i:49116304 original size:20 final size:21
Alignment explanation
Indices: 49116256--49116311 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
49116246 TAATAAATTA
* *
49116256 TATATATATATATATTATACTT
1 TATATACATATA-AATATACTT
*
49116278 TACATACATATAAATATAC-T
1 TATATACATATAAATATACTT
*
49116298 TATATACAAATAAA
1 TATATACATATAAA
49116312 ATATTCTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 6 0.21
22 10 0.34
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (21 bp):
TATATACATATAAATATACTT
Found at i:49118351 original size:19 final size:20
Alignment explanation
Indices: 49118329--49118366 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
49118319 TTTAAGATGA
49118329 TAAAACAAACTAA-ACTAAT
1 TAAAACAAACTAACACTAAT
**
49118348 TAAAGTAAACTAACACTAA
1 TAAAACAAACTAACACTAA
49118367 ATCTGACCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.61, C:0.16, G:0.03, T:0.21
Consensus pattern (20 bp):
TAAAACAAACTAACACTAAT
Found at i:49121271 original size:10 final size:10
Alignment explanation
Indices: 49121256--49121290 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
49121246 CTATGACTAA
49121256 ATGTGATTAT
1 ATGTGATTAT
49121266 ATGTGATTAT
1 ATGTGATTAT
* *
49121276 ATTTGCTTAT
1 ATGTGATTAT
49121286 ATGTG
1 ATGTG
49121291 GTTAATACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.26, C:0.03, G:0.20, T:0.51
Consensus pattern (10 bp):
ATGTGATTAT
Found at i:49124317 original size:53 final size:53
Alignment explanation
Indices: 49124252--49124356 Score: 174
Period size: 53 Copynumber: 2.0 Consensus size: 53
49124242 AAACTGCTTT
*
49124252 TTGGACTCGGTATGGGCATTATGAGTTTTTAGTGATGCTGTTTGGATTAACTC
1 TTGGACTCGGTATAGGCATTATGAGTTTTTAGTGATGCTGTTTGGATTAACTC
* * *
49124305 TTGGACTTGGTATAGGCATTATGAGTTTTTGGTGATGTTGTTTGGATTAACT
1 TTGGACTCGGTATAGGCATTATGAGTTTTTAGTGATGCTGTTTGGATTAACT
49124357 AAGGTCTTGC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.19, C:0.09, G:0.29, T:0.44
Consensus pattern (53 bp):
TTGGACTCGGTATAGGCATTATGAGTTTTTAGTGATGCTGTTTGGATTAACTC
Found at i:49127312 original size:29 final size:29
Alignment explanation
Indices: 49127279--49127343 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
49127269 GTGACGAGAT
*
49127279 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
49127308 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
49127337 CGGCACT
1 TGGCACT
49127344 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:49131283 original size:15 final size:15
Alignment explanation
Indices: 49131251--49131279 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49131241 ATTTTCTGTG
49131251 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
49131266 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
49131280 ATTTTAGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:49131980 original size:43 final size:43
Alignment explanation
Indices: 49131929--49132058 Score: 156
Period size: 43 Copynumber: 3.0 Consensus size: 43
49131919 CATAGTATTT
49131929 TCGATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCA
* * *
49131972 TCGATATGTGTTCTCGTGTAAGACC-CTATTTGGGACAGTGGCA
1 TCGATATGTGTTCTCGTGTAAGACCAC-GTCTGGGACATTGGCA
* * * * *
49132015 TCGATTTGTGATT-ACATGTAAGACCATGTCTGGGACGTTGGCA
1 TCGATATGTG-TTCTCGTGTAAGACCACGTCTGGGACATTGGCA
49132058 T
1 T
49132059 TGTACGATAT
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 1 0.01
43 70 0.96
44 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
TCGATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:49135071 original size:24 final size:24
Alignment explanation
Indices: 49135044--49135206 Score: 308
Period size: 24 Copynumber: 6.8 Consensus size: 24
49135034 GCTGGAAATA
49135044 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
49135068 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
49135092 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
49135116 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
49135140 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
49135164 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
49135188 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
49135207 ACATAATAAG
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 137 1.00
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:49143002 original size:24 final size:24
Alignment explanation
Indices: 49142975--49143137 Score: 308
Period size: 24 Copynumber: 6.8 Consensus size: 24
49142965 GCTGGAAATA
49142975 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
49142999 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
49143023 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
49143047 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
49143071 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
49143095 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
49143119 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
49143138 ACATAATAAG
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 137 1.00
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:49149043 original size:40 final size:40
Alignment explanation
Indices: 49148938--49149154 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
49148928 CGGATGATAA
* *
49148938 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
49148978 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49149017 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49149057 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
49149097 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
49149137 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
49149155 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 51 0.31
40 115 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49149152 original size:119 final size:119
Alignment explanation
Indices: 49148934--49149154 Score: 331
Period size: 119 Copynumber: 1.9 Consensus size: 119
49148924 TATTCGGATG
* *
49148934 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
49148999 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
*
49149053 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
49149117 ATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
64 ATTTGAGCAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
49149155 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
118 2 0.02
119 64 0.70
120 26 0.28
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
Found at i:49157065 original size:39 final size:40
Alignment explanation
Indices: 49157002--49157187 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
49156992 TATTCGGATG
* *
49157002 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
49157042 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
49157081 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
49157121 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
49157161 ATAA-CGGGCTAAGTCCCGAA-GCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
49157188 AGCAAGTAGC
Statistics
Matches: 139, Mismatches: 4, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
38 7 0.05
39 52 0.37
40 80 0.58
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:49157111 original size:40 final size:40
Alignment explanation
Indices: 49157006--49157220 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
49156996 CGGATGATAA
* *
49157006 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
49157046 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49157085 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
49157125 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
49157164 ACGGGCTAAGTCCCGAA-GCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
49157203 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
49157221 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 9, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
37 2 0.01
38 28 0.17
39 53 0.33
40 78 0.48
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49157169 original size:79 final size:78
Alignment explanation
Indices: 49157002--49157187 Score: 286
Period size: 79 Copynumber: 2.4 Consensus size: 78
49156992 TATTCGGATG
* *
49157002 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
49157067 TTGTGCGAGTTACT
65 TTGTGCGAGTTACT
* *
49157081 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATA-ACGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
49157145 ATTTGTGCGAGTTACT
63 ATTTGTGCGAGTTACT
49157161 ATAACGGGCTAAGTCCCGAA-GCATTTG
1 ATAACGGGCTAAGTCCCGAAGGCATTTG
49157188 AGCAAGTAGC
Statistics
Matches: 99, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
78 9 0.09
79 62 0.63
80 28 0.28
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
ATAACGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATT
TGTGCGAGTTACT
Found at i:49160694 original size:2 final size:2
Alignment explanation
Indices: 49160687--49160713 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
49160677 TAATTGATAG
49160687 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
49160714 GTGGGTTCGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:49160783 original size:29 final size:28
Alignment explanation
Indices: 49160749--49160822 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 28
49160739 TAATCAACCA
*
49160749 CGCACACTTAGTGCCATGTACTTT-AAAC
1 CGCACACTTAGTGCCATGCA-TTTCAAAC
* *
49160777 TCGCACACTTAGTGGCATGCATTTCAAGC
1 -CGCACACTTAGTGCCATGCATTTCAAAC
49160806 CTGCACACTTAGTGCCA
1 C-GCACACTTAGTGCCA
49160823 ATCTCACAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 4 0.10
29 35 0.90
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGCATTTCAAAC
Found at i:49161271 original size:6 final size:6
Alignment explanation
Indices: 49161257--49161310 Score: 72
Period size: 6 Copynumber: 9.0 Consensus size: 6
49161247 TGATGGCCGA
* * * *
49161257 ATATGT ATATCT ATATAT CTATAT CTATAT ATATAT ATATAT ATATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
49161305 ATATAT
1 ATATAT
49161311 CAACTATACT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.50
Consensus pattern (6 bp):
ATATAT
Found at i:49161275 original size:8 final size:8
Alignment explanation
Indices: 49161257--49161310 Score: 72
Period size: 8 Copynumber: 6.8 Consensus size: 8
49161247 TGATGGCCGA
*
49161257 ATATGTAT
1 ATATATAT
*
49161265 ATCTATAT
1 ATATATAT
*
49161273 ATCTATAT
1 ATATATAT
*
49161281 CTATATAT
1 ATATATAT
49161289 ATATATAT
1 ATATATAT
49161297 ATATATAT
1 ATATATAT
49161305 ATATAT
1 ATATAT
49161311 CAACTATACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 41 1.00
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.50
Consensus pattern (8 bp):
ATATATAT
Found at i:49161279 original size:14 final size:14
Alignment explanation
Indices: 49161257--49161308 Score: 77
Period size: 14 Copynumber: 3.7 Consensus size: 14
49161247 TGATGGCCGA
*
49161257 ATATGTATATCTAT
1 ATATATATATCTAT
*
49161271 ATATCTATATCTAT
1 ATATATATATCTAT
*
49161285 ATATATATATATAT
1 ATATATATATCTAT
49161299 ATATATATAT
1 ATATATATAT
49161309 ATCAACTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (14 bp):
ATATATATATCTAT
Found at i:49161919 original size:13 final size:13
Alignment explanation
Indices: 49161901--49161925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49161891 TCTTTTCCTT
49161901 TTTAATTCCTTTC
1 TTTAATTCCTTTC
49161914 TTTAATTCCTTT
1 TTTAATTCCTTT
49161926 TAATTTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTAATTCCTTTC
Found at i:49163673 original size:43 final size:43
Alignment explanation
Indices: 49163622--49163751 Score: 147
Period size: 43 Copynumber: 3.0 Consensus size: 43
49163612 CATAGGATTT
**
49163622 TCGATATGTGTTCTTGTGTAAGACCACTTCTGGGACATTGGCA
1 TCGATATGTGTTCTAATGTAAGACCACTTCTGGGACATTGGCA
* * * *
49163665 TCGATATGTGTTCTCATGTAACACC-CTGTCTGGGATAGTGGCA
1 TCGATATGTGTTCTAATGTAAGACCACT-TCTGGGACATTGGCA
* * *
49163708 TCAATATGTGATT-AAATGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTG-TTCTAATGTAAGACCACTTCTGGGACATTGGCA
49163751 T
1 T
49163752 TGTACAATAT
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 2 0.03
43 67 0.93
44 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGATATGTGTTCTAATGTAAGACCACTTCTGGGACATTGGCA
Found at i:49167492 original size:18 final size:18
Alignment explanation
Indices: 49167458--49167498 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
49167448 ATTCGTGGTA
*
49167458 TTTTTGAAAACATTTGTC
1 TTTTTGAAAACACTTGTC
* *
49167476 TTTTTGAAAACCCTTGTG
1 TTTTTGAAAACACTTGTC
49167494 TTTTT
1 TTTTT
49167499 CCTACTGCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.22, C:0.12, G:0.12, T:0.54
Consensus pattern (18 bp):
TTTTTGAAAACACTTGTC
Found at i:49171578 original size:25 final size:27
Alignment explanation
Indices: 49171525--49171577 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
49171515 CTTAGCGTAT
49171525 AAGGGCAAAATAGTCATTTTACCACAC
1 AAGGGCAAAATAGTCATTTTACCACAC
* *
49171552 AAGGGTAATATAGTCATTTTACCACA
1 AAGGGCAAAATAGTCATTTTACCACA
49171578 AAGAGGATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (27 bp):
AAGGGCAAAATAGTCATTTTACCACAC
Found at i:49171827 original size:17 final size:17
Alignment explanation
Indices: 49171802--49171846 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
49171792 GTTAACCCAT
49171802 GTAGGGCCCACGAGCCC
1 GTAGGGCCCACGAGCCC
*
49171819 GTGGGGCCCACGAGCCC
1 GTAGGGCCCACGAGCCC
*
49171836 TTAGGGCCCAC
1 GTAGGGCCCAC
49171847 ACGGTCCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.16, C:0.40, G:0.36, T:0.09
Consensus pattern (17 bp):
GTAGGGCCCACGAGCCC
Found at i:49172622 original size:7 final size:7
Alignment explanation
Indices: 49172602--49172648 Score: 76
Period size: 7 Copynumber: 6.6 Consensus size: 7
49172592 AAAAAGAATT
49172602 GGGAGAAA
1 GGGA-AAA
*
49172610 GAGAAAA
1 GGGAAAA
49172617 GGGAAAA
1 GGGAAAA
49172624 GGGAAAA
1 GGGAAAA
49172631 GGGAAAA
1 GGGAAAA
49172638 GGGAAAA
1 GGGAAAA
49172645 GGGA
1 GGGA
49172649 GTATTTGGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
7 34 0.92
8 3 0.08
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (7 bp):
GGGAAAA
Found at i:49179742 original size:29 final size:29
Alignment explanation
Indices: 49179680--49179782 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
49179670 GTGACGAGAT
* * *
49179680 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
49179709 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
49179738 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
49179767 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
49179783 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:49184138 original size:17 final size:17
Alignment explanation
Indices: 49184118--49184150 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
49184108 TCAGAAATAA
*
49184118 AAATAAATGATGAAAAG
1 AAATAAATGAAGAAAAG
49184135 AAATAAATGAAGAAAA
1 AAATAAATGAAGAAAA
49184151 ATAAAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (17 bp):
AAATAAATGAAGAAAAG
Found at i:49184144 original size:14 final size:13
Alignment explanation
Indices: 49184127--49184169 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
49184117 AAAATAAATG
49184127 ATGAAAAGAAATAA
1 ATGAAAA-AAATAA
49184141 ATGAAGAAAAATAA
1 ATGAA-AAAAATAA
49184155 A-GAAATAAAATAA
1 ATGAAA-AAAATAA
49184168 AT
1 AT
49184170 CAATAAACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.04
13 11 0.42
14 12 0.46
15 2 0.08
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
ATGAAAAAAATAA
Found at i:49186578 original size:43 final size:43
Alignment explanation
Indices: 49186528--49186643 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
49186518 TATGTGTTCT
* *
49186528 CATGTAAGACCATGTCTGGGA-AGTTGGTATCGATAAGTGATTA
1 CATGTAAGACCATGTCTGGGACAG-TGGCATCGATAAGTAATTA
* * * * * *
49186571 CGTGTAAGACCCTTTTTGGGACAGTGGCATTGATATGTAATTA
1 CATGTAAGACCATGTCTGGGACAGTGGCATCGATAAGTAATTA
* *
49186614 CATGTAAGACCACGTCTGGGACATTGGCAT
1 CATGTAAGACCATGTCTGGGACAGTGGCAT
49186644 TGTACGATAT
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
43 56 0.97
44 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACAGTGGCATCGATAAGTAATTA
Found at i:49190613 original size:2 final size:2
Alignment explanation
Indices: 49190597--49190645 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
49190587 GAAAAGTGAA
* *
49190597 AG AG AG AA AG TG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
49190639 AG AG AG A
1 AG AG AG A
49190646 TGTGTAAAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.47, T:0.02
Consensus pattern (2 bp):
AG
Found at i:49192554 original size:21 final size:21
Alignment explanation
Indices: 49192529--49192569 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
49192519 CACATACCGA
49192529 GCTCATTCATATGAGTTTTTC
1 GCTCATTCATATGAGTTTTTC
49192550 GCTCATTCATATGAGTTTTT
1 GCTCATTCATATGAGTTTTT
49192570 TGTACATACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (21 bp):
GCTCATTCATATGAGTTTTTC
Found at i:49194349 original size:27 final size:27
Alignment explanation
Indices: 49194319--49194372 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
49194309 ATAATTAAAG
**
49194319 TATGAATTATTAAAAAATTACTACGAA
1 TATGAATTACGAAAAAATTACTACGAA
49194346 TATGAATTACGAAAAAATTACTACGAA
1 TATGAATTACGAAAAAATTACTACGAA
49194373 ACTCCATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (27 bp):
TATGAATTACGAAAAAATTACTACGAA
Found at i:49196073 original size:2 final size:2
Alignment explanation
Indices: 49196068--49196101 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
49196058 AAAGCTCTCT
* *
49196068 CA CA CA CA CA CA TA CA CA CA TA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
49196102 TATATATAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.44, G:0.00, T:0.06
Consensus pattern (2 bp):
CA
Found at i:49197768 original size:37 final size:37
Alignment explanation
Indices: 49197727--49197799 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
49197717 TTCCACCATA
*
49197727 AAATTTTCATAATTTTTAGTCCAGCCAATAAGTACAG
1 AAATTTTCAGAATTTTTAGTCCAGCCAATAAGTACAG
49197764 AAATTTTCAGAATTTTTAGTCCAGCCAATAAGTACA
1 AAATTTTCAGAATTTTTAGTCCAGCCAATAAGTACA
49197800 ATTTATTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.34
Consensus pattern (37 bp):
AAATTTTCAGAATTTTTAGTCCAGCCAATAAGTACAG
Found at i:49198573 original size:51 final size:51
Alignment explanation
Indices: 49198434--49198586 Score: 193
Period size: 51 Copynumber: 3.0 Consensus size: 51
49198424 ACACTTGTAG
*
49198434 CCGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTA-AAATGTGA
1 CCGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA
* * * * *
49198484 CCTAA-CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGA
1 CCGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA
* * * * *
49198534 TCGAAGTTATCAGGTACGCAAAGTAGCCTGCACTTAGTACTACACACGTGA
1 CCGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA
49198585 CC
1 CC
49198587 TCACAATAGC
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
49 32 0.38
50 14 0.17
51 38 0.45
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (51 bp):
CCGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA
Found at i:49202566 original size:18 final size:18
Alignment explanation
Indices: 49202543--49202577 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49202533 ATGCGAATAT
*
49202543 ATAAAAACAATAAATAAC
1 ATAAAAACAACAAATAAC
*
49202561 ATAAAAATAACAAATAA
1 ATAAAAACAACAAATAA
49202578 TTTATGAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (18 bp):
ATAAAAACAACAAATAAC
Found at i:49202976 original size:7 final size:7
Alignment explanation
Indices: 49202964--49203111 Score: 58
Period size: 7 Copynumber: 20.1 Consensus size: 7
49202954 AATTATACAT
49202964 AATAATA
1 AATAATA
49202971 AATAATA
1 AATAATA
49202978 AATAATTA
1 AATAA-TA
*
49202986 TATAATA
1 AATAATA
*
49202993 TATAATAA
1 AATAAT-A
*
49203001 AATAAAAA
1 AAT-AATA
*
49203009 ATATAATG
1 A-ATAATA
49203017 AATAATA
1 AATAATA
49203024 TATATAATAA
1 -A-ATAAT-A
*
49203034 AATGTATA
1 AAT-AATA
*
49203042 AATCA-A
1 AATAATA
49203048 AAT-ATA
1 AATAATA
49203054 TAATAA-A
1 -AATAATA
*
49203061 ATGTTAATA
1 A--ATAATA
49203070 ATATAATA
1 A-ATAATA
49203078 AATAAT-
1 AATAATA
49203084 -ATAA-A
1 AATAATA
49203089 AATAA-A
1 AATAATA
49203095 AATAATA
1 AATAATA
49203102 TATATAATA
1 -A-ATAATA
49203111 A
1 A
49203112 TTTTACATAC
Statistics
Matches: 111, Mismatches: 11, Indels: 37
0.70 0.07 0.23
Matches are distributed among these distances:
5 5 0.05
6 16 0.14
7 36 0.32
8 33 0.30
9 20 0.18
10 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:49203004 original size:12 final size:12
Alignment explanation
Indices: 49202951--49203111 Score: 84
Period size: 12 Copynumber: 13.2 Consensus size: 12
49202941 TACAAATTTT
49202951 TAAAAT-TATACA
1 TAAAATATATA-A
*
49202963 TAATAATAAATAA
1 TAA-AATATATAA
*
49202976 T-AAATA-ATTA
1 TAAAATATATAA
*
49202986 TATAATATATAA
1 TAAAATATATAA
49202998 TAAAATA-A-AA
1 TAAAATATATAA
*
49203008 -AATATA-ATGAA
1 TAAAATATAT-AA
*
49203019 TAATATATATAA
1 TAAAATATATAA
*
49203031 TAAAATGTATAAA
1 TAAAATATAT-AA
49203044 TCAAAATATATAA
1 T-AAAATATATAA
*
49203057 TAAAATGTTAATAA
1 TAAAAT-AT-ATAA
* *
49203071 TATAATAAATAA
1 TAAAATATATAA
* *
49203083 TATAAAAATAAAAA
1 TA-AAATAT-ATAA
*
49203097 TAATATATATAA
1 TAAAATATATAA
49203109 TAA
1 TAA
49203112 TTTTACATAC
Statistics
Matches: 115, Mismatches: 20, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
9 6 0.05
10 6 0.05
11 11 0.10
12 46 0.40
13 21 0.18
14 25 0.22
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (12 bp):
TAAAATATATAA
Found at i:49203035 original size:26 final size:25
Alignment explanation
Indices: 49202951--49203111 Score: 105
Period size: 26 Copynumber: 6.1 Consensus size: 25
49202941 TACAAATTTT
*
49202951 TAAAATTATACATAATAATAAATAATAAA
1 TAAAA-TATA-ATAATAATATAT-AT-AA
* *
49202980 TAATTATATAATATATAATA-AAATAA
1 TAA-AATATAATA-ATAATATATATAA
49203006 -AAAATATAATGAATAATATATATAA
1 TAAAATATAAT-AATAATATATATAA
* *
49203031 TAAAATGT-ATAAATCAAAATATATAA
1 TAAAATATAAT-AAT-AATATATATAA
* *
49203057 TAAAATGTTAATAAT-ATAATAAATAA
1 TAAAAT-ATAATAATAAT-ATATATAA
* *
49203083 TATAAAAATAAAAATAATATATATAA
1 TA-AAATATAATAATAATATATATAA
49203109 TAA
1 TAA
49203112 TTTTACATAC
Statistics
Matches: 107, Mismatches: 14, Indels: 26
0.73 0.10 0.18
Matches are distributed among these distances:
24 13 0.12
25 15 0.14
26 48 0.45
27 11 0.10
28 6 0.06
29 13 0.12
30 1 0.01
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (25 bp):
TAAAATATAATAATAATATATATAA
Found at i:49203168 original size:16 final size:16
Alignment explanation
Indices: 49203122--49203189 Score: 61
Period size: 16 Copynumber: 4.4 Consensus size: 16
49203112 TTTTACATAC
* *
49203122 ATAAATAATGTTTATA
1 ATAAATAATATTTAAA
* **
49203138 GTAAA-AATAAATAAA
1 ATAAATAATATTTAAA
49203153 ATAAATAATATTTAAA
1 ATAAATAATATTTAAA
49203169 ATAAATAA-ATTATAAA
1 ATAAATAATATT-TAAA
49203185 A-AAAT
1 ATAAAT
49203190 TTCAAAAGGA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
15 17 0.40
16 25 0.60
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
ATAAATAATATTTAAA
Found at i:49204756 original size:69 final size:69
Alignment explanation
Indices: 49204645--49204859 Score: 340
Period size: 69 Copynumber: 3.1 Consensus size: 69
49204635 GCTATTCTCA
* * *
49204645 ATCTGCTCCCCGTCTAATATAGAGATGCCAAATCTGTCATCTTTGATCTGTTTCGATACACGAAT
1 ATCTGCTCCCCGTCTAATATAGAGATACCAAATCTGTCATCTTCGATCTGCTTCGATACACGAAT
49204710 GTCG
66 GTCG
* *
49204714 ATCTGCTTCCCGTCTAATATAGAGATACCAAATCTATCATCTTCGATCTGCTTCGATACACGAAT
1 ATCTGCTCCCCGTCTAATATAGAGATACCAAATCTGTCATCTTCGATCTGCTTCGATACACGAAT
49204779 GTCG
66 GTCG
** * *
49204783 ATCCACTCCCCGTCTAATATAGAGACACCAAATCTGTCATCTTCGATCTGCTTCAATACACGAAT
1 ATCTGCTCCCCGTCTAATATAGAGATACCAAATCTGTCATCTTCGATCTGCTTCGATACACGAAT
49204848 GTCAG
66 GTC-G
49204853 ATCTGCT
1 ATCTGCT
49204860 ATATTCGATC
Statistics
Matches: 132, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
69 126 0.95
70 6 0.05
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (69 bp):
ATCTGCTCCCCGTCTAATATAGAGATACCAAATCTGTCATCTTCGATCTGCTTCGATACACGAAT
GTCG
Found at i:49204926 original size:84 final size:84
Alignment explanation
Indices: 49204792--49205427 Score: 685
Period size: 84 Copynumber: 7.5 Consensus size: 84
49204782 GATCCACTCC
* * * *
49204792 CCGTCTAATATAGAGACACCAAATCTGTCATCTTCGATCTGCTTCAATACACGAATGTCAGATCT
1 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCAATACACGAATATCAGATCT
* *
49204857 GCTATATTCGATCTACTCT
66 GCTATCTTCGATCTGCTCT
* * * * *
49204876 CCATCTAATACAGAGACGCCAAATCTGTCATCTTTGATTTGCTTCGATACACAAATATCATATCT
1 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCAATACACGAATATCAGATCT
* * *
49204941 ACTATTTTCGATCTGTTCT
66 GCTATCTTCGATCTGCTCT
* *
49204960 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCAATACACAAATATCATATCT
1 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCAATACACGAATATCAGATCT
* *
49205025 ACTATTTTCGATCTGCTCT
66 GCTATCTTCGATCTGCTCT
49205044 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCAATACACGAATATCAGATCT
1 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCAATACACGAATATCAGATCT
49205109 GCTATCTTCGATCTGCTCT
66 GCTATCTTCGATCTGCTCT
* * * * * *
49205128 CCG--T-ATACAGAGAAGCCAAATCTATCATCTTTGATTTGCTTCGATACATGAATGTCAGATCT
1 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCAATACACGAATATCAGATCT
* *
49205190 GCTATTTTTGATCTGCTCT
66 GCTATCTTCGATCTGCTCT
* * * * *
49205209 CCTTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTTCTGTCAATACA-GAGACACC
1 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTG----CT-TCAATACACGA-ATATC
* * * *
49205273 AAATCTGCTGTCTTCGATCTACCCT
60 AGATCTGCTATCTTCGATCTGCTCT
* * * * ***
49205298 CTGTC-AATACAGAGACGCCAAATCT-TTATCTTCGATTTGCTCTCTATCAATACA-GAGACGCC
1 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGA--T-CT-GCT-TCAATACACGA-ATATC
* * * *
49205360 AAATCTGCTATCTTCAATTTGCCCT
60 AGATCTGCTATCTTCGATCTGCTCT
*
49205385 CTGT-TAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTT
1 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTT
49205428 TGGTCTCAAG
Statistics
Matches: 481, Mismatches: 56, Indels: 31
0.85 0.10 0.05
Matches are distributed among these distances:
81 71 0.15
82 1 0.00
83 2 0.00
84 267 0.56
85 2 0.00
86 1 0.00
87 71 0.15
88 32 0.07
89 32 0.07
90 2 0.00
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (84 bp):
CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCAATACACGAATATCAGATCT
GCTATCTTCGATCTGCTCT
Found at i:49205038 original size:39 final size:39
Alignment explanation
Indices: 49204915--49205041 Score: 96
Period size: 39 Copynumber: 3.1 Consensus size: 39
49204905 ATCTTTGATT
*
49204915 TGCTTCGATACACAAATATCATATCTACTATTTTCGATC
1 TGCTTCAATACACAAATATCATATCTACTATTTTCGATC
* * *** * *
49204954 TGTTCTCCGTCTAATACAGAGACGCCAAATCT-GTCATCTTT-GATC
1 TG--CT---TC-AATACACAAATATCATATCTACT-AT-TTTCGATC
49204999 TGCTTCAATACACAAATATCATATCTACTATTTTCGATC
1 TGCTTCAATACACAAATATCATATCTACTATTTTCGATC
49205038 TGCT
1 TGCT
49205042 CTCCGTCTAA
Statistics
Matches: 63, Mismatches: 15, Indels: 20
0.64 0.15 0.20
Matches are distributed among these distances:
38 3 0.05
39 26 0.41
40 3 0.05
41 2 0.03
43 2 0.03
44 3 0.05
45 21 0.33
46 3 0.05
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.37
Consensus pattern (39 bp):
TGCTTCAATACACAAATATCATATCTACTATTTTCGATC
Found at i:49205109 original size:39 final size:39
Alignment explanation
Indices: 49204979--49205206 Score: 112
Period size: 39 Copynumber: 5.6 Consensus size: 39
49204969 ACAGAGACGC
*
49204979 CAAATCTGTC-ATCTTTGATCTGCTTCAATACACAAATAT
1 CAAATCTGTCTATCTTTGATCTGCTTCAATACA-GAATAT
* * ***
49205018 CATATCT-ACTAT-TTTCGATCTGCTCTCCGTCTAATACAGAGACGC
1 CAAATCTGTCTATCTTT-GATCTG--CT---TC-AATACAGA-ATAT
49205063 CAAATCTGTC-ATCTTTGATCTGCTTCAATACACGAATAT
1 CAAATCTGTCTATCTTTGATCTGCTTCAATACA-GAATAT
* * * *
49205102 CAGATCTG-CTATCTTCGATCTGCTCTCCGTATACAGAGA-AGC
1 CAAATCTGTCTATCTTTGATCTGCT-T-C-AATACAGA-ATA-T
* * * *
49205144 CAAATCTATC-ATCTTTGATTTGCTTCGATACATGAATGT
1 CAAATCTGTCTATCTTTGATCTGCTTCAATACA-GAATAT
* *
49205183 CAGATCTG-CTATTTTTGATCTGCT
1 CAAATCTGTCTATCTTTGATCTGCT
49205207 CTCCTTCTAA
Statistics
Matches: 141, Mismatches: 26, Indels: 44
0.67 0.12 0.21
Matches are distributed among these distances:
38 6 0.04
39 65 0.46
40 8 0.06
41 7 0.05
42 24 0.17
43 3 0.02
44 3 0.02
45 21 0.15
46 4 0.03
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (39 bp):
CAAATCTGTCTATCTTTGATCTGCTTCAATACAGAATAT
Found at i:49205233 original size:249 final size:251
Alignment explanation
Indices: 49204792--49205252 Score: 728
Period size: 249 Copynumber: 1.8 Consensus size: 251
49204782 GATCCACTCC
* *
49204792 CCGTCTAATATAGAGACACCAAATCTGTCATCTTCGATCTGCTTCAATACACGAATGTCAGATCT
1 CCGTCTAATACAGAGACACCAAATCTGTCATCTTCGATCTGCTTCAATACACGAATATCAGATCT
* *
49204857 GCTATATTCGATCTACTCTCCATCTAATACAGAGACGCCAAATCTGTCATCTTTGATTTGCTTCG
66 GCTATATTCGATCTACTCTCCA-CTAATACAGAGAAGCCAAATCTATCATCTTTGATTTGCTTCG
* * *
49204922 ATACACAAATATCATATCTACTATTTTCGATCTGTTCTCCGTCTAATACAGAGACGCCAAATCTG
130 ATACACAAATATCAGATCTACTATTTTCGATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTA
*
49204987 TCATCTTTGATCTGCTTCAATACACAAATATCATATCTACTATTTTCGATCTGCTCT
195 TCATCTTCGATCTGCTTCAATACACAAATATCATATCTACTATTTTCGATCTGCTCT
* *
49205044 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTCAATACACGAATATCAGATCT
1 CCGTCTAATACAGAGACACCAAATCTGTCATCTTCGATCTGCTTCAATACACGAATATCAGATCT
* * *
49205109 GCTATCTTCGATCTGCTCTCC-GT-ATACAGAGAAGCCAAATCTATCATCTTTGATTTGCTTCGA
66 GCTATATTCGATCTACTCTCCACTAATACAGAGAAGCCAAATCTATCATCTTTGATTTGCTTCGA
** * * * *
49205172 TACATGAATGTCAGATCTGCTATTTTTGATCTGCTCTCCTTCTAATACAGAGACGCCAAATCTAT
131 TACACAAATATCAGATCTACTATTTTCGATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTAT
49205237 CATCTTCGATCTGCTT
196 CATCTTCGATCTGCTT
49205253 TCTGTCAATA
Statistics
Matches: 190, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
249 109 0.57
250 1 0.01
252 80 0.42
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (251 bp):
CCGTCTAATACAGAGACACCAAATCTGTCATCTTCGATCTGCTTCAATACACGAATATCAGATCT
GCTATATTCGATCTACTCTCCACTAATACAGAGAAGCCAAATCTATCATCTTTGATTTGCTTCGA
TACACAAATATCAGATCTACTATTTTCGATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTAT
CATCTTCGATCTGCTTCAATACACAAATATCATATCTACTATTTTCGATCTGCTCT
Found at i:49205266 original size:44 final size:43
Alignment explanation
Indices: 49204947--49205426 Score: 289
Period size: 44 Copynumber: 11.3 Consensus size: 43
49204937 ATCTACTATT
* *
49204947 TTCGATCTGTTCTCCGTCTAATACAGAGACGCCAAATCTGTCATC
1 TTCGATCTGCTCTCTGTC-AATACAGAGACGCCAAATCT-TCATC
* * * *** * * *
49204992 TTTGATCTG----CT-TCAATACACAAATATCATATCTACTATT
1 TTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTTC-ATC
*
49205031 TTCGATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTCATC
1 TTCGATCTGCTCTCTGTC-AATACAGAGACGCCAAATCT-TCATC
* *** * *
49205076 TTTGATCTG----CT-TCAATACACGA-ATATCAGATCTGCTATC
1 TTCGATCTGCTCTCTGTCAATACA-GAGACGCCAAATCTTC-ATC
* *
49205115 TTCGATCTGCTCTCCGT--ATACAGAGAAGCCAAATCTATCATC
1 TTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCT-TCATC
* * * * * * *
49205157 TTTGATTTGCT-TC-G---ATACATGA-ATGTCAGATCTGCTATT
1 TTCGATCTGCTCTCTGTCAATACA-GAGACGCCAAATCTTC-ATC
*
49205196 TTTGATCTGCTCTCCT-TCTAATACAGAGACGCCAAATCTATCATC
1 TTCGATCTGCTCT-CTGTC-AATACAGAGACGCCAAATCT-TCATC
* * * *
49205241 TTCGATCTGCTTTCTGTCAATACAGAGACACCAAATCTGCTGTC
1 TTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTTC-ATC
* * *
49205285 TTCGATCTACCCTCTGTCAATACAGAGACGCCAAATCTTTATC
1 TTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTTCATC
* * *
49205328 TTCGATTTGCTCTCTATCAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTTC-ATC
* * * *
49205372 TTCAATTTGCCCTCTGTTAATACAGAGACGCCAAATCTGTCATC
1 TTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCT-TCATC
*
49205416 TTTGATCTGCT
1 TTCGATCTGCT
49205427 TTGGTCTCAA
Statistics
Matches: 329, Mismatches: 74, Indels: 65
0.70 0.16 0.14
Matches are distributed among these distances:
38 3 0.01
39 73 0.22
40 10 0.03
41 7 0.02
42 24 0.07
43 40 0.12
44 109 0.33
45 61 0.19
46 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (43 bp):
TTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTTCATC
Found at i:49205354 original size:87 final size:88
Alignment explanation
Indices: 49205215--49205426 Score: 309
Period size: 87 Copynumber: 2.4 Consensus size: 88
49205205 CTCTCCTTCT
* *
49205215 AATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTTCTGTCAATACAGAGACACCAAATCTG
1 AATACAGAGACGCCAAATCTATCATCTTCGATCTGCTCTCTATCAATACAGAGACACCAAATCTG
* *
49205280 CTGTCTTCGATCTACCCTCTGTC
66 CTATCTTCAATCTACCCTCTGTC
* * *
49205303 AATACAGAGACGCCAAATCT-TTATCTTCGATTTGCTCTCTATCAATACAGAGACGCCAAATCTG
1 AATACAGAGACGCCAAATCTATCATCTTCGATCTGCTCTCTATCAATACAGAGACACCAAATCTG
* * *
49205367 CTATCTTCAATTTGCCCTCTGTT
66 CTATCTTCAATCTACCCTCTGTC
* *
49205390 AATACAGAGACGCCAAATCTGTCATCTTTGATCTGCT
1 AATACAGAGACGCCAAATCTATCATCTTCGATCTGCT
49205427 TTGGTCTCAA
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
87 77 0.70
88 33 0.30
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (88 bp):
AATACAGAGACGCCAAATCTATCATCTTCGATCTGCTCTCTATCAATACAGAGACACCAAATCTG
CTATCTTCAATCTACCCTCTGTC
Found at i:49212319 original size:13 final size:13
Alignment explanation
Indices: 49212301--49212325 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49212291 TAATGGTATA
49212301 TTGAATCCATGAT
1 TTGAATCCATGAT
49212314 TTGAATCCATGA
1 TTGAATCCATGA
49212326 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:49213893 original size:48 final size:48
Alignment explanation
Indices: 49213834--49214168 Score: 616
Period size: 48 Copynumber: 7.0 Consensus size: 48
49213824 AAAGTGTAAT
49213834 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
49213882 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
49213930 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* *
49213978 TATGCGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* *
49214026 TATGCGGTAAAGCCGAATGGCTAATGTGGAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* *
49214074 TATGTGGTAAAGCCGAATGGCTAACGTGGAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
49214122 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGT
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGT
49214169 GAAATACATG
Statistics
Matches: 279, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 279 1.00
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:49214170 original size:20 final size:20
Alignment explanation
Indices: 49214145--49214188 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
49214135 CGAATGGCTA
49214145 ATGTGAAATACATGTGTGAT
1 ATGTGAAATACATGTGTGAT
49214165 ATGTGAAATACATGTGTGAT
1 ATGTGAAATACATGTGTGAT
49214185 ATGT
1 ATGT
49214189 ATATGTGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (20 bp):
ATGTGAAATACATGTGTGAT
Found at i:49214196 original size:116 final size:116
Alignment explanation
Indices: 49214049--49214267 Score: 384
Period size: 116 Copynumber: 1.9 Consensus size: 116
49214039 CGAATGGCTA
* * *
49214049 ATGTGGAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAACGTGGAATACATGTGT
1 ATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAACGTGAAATACATGTGT
*
49214114 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGAT
66 GATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGAT
* *
49214165 ATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGT
1 ATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAACGTGAAATACATGTGT
49214230 GATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 GATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
49214268 TGTTGTAACA
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 97 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (116 bp):
ATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAACGTGAAATACATGTGT
GATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGAT
Found at i:49214212 original size:68 final size:68
Alignment explanation
Indices: 49214103--49214235 Score: 248
Period size: 68 Copynumber: 2.0 Consensus size: 68
49214093 GCTAACGTGG
*
49214103 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATACATGTGTGATATG
49214168 TGA
66 TGA
*
49214171 AATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATACATGTGTGATATG
49214236 AATATGTGGT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (68 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATACATGTGTGATATG
TGA
Found at i:49214221 original size:48 final size:48
Alignment explanation
Indices: 49214165--49214267 Score: 179
Period size: 48 Copynumber: 2.1 Consensus size: 48
49214155 CATGTGTGAT
*
49214165 ATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTA
1 ATGTGAAATACATGTGTGATATGAATATGTGGTAAAGCAGAATGGCTA
* *
49214213 ATGTGAAATATATGTGTGATATGAATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATACATGTGTGATATGAATATGTGGTAAAGCAGAATGGCTA
49214261 ATGTGAA
1 ATGTGAA
49214268 TGTTGTAACA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTGAAATACATGTGTGATATGAATATGTGGTAAAGCAGAATGGCTA
Found at i:49214365 original size:37 final size:37
Alignment explanation
Indices: 49214315--49214434 Score: 188
Period size: 37 Copynumber: 3.2 Consensus size: 37
49214305 AATATATTCC
* *
49214315 GGGTAAGACCCGATGACTAAGTATGGAGATTATGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCT
49214352 GGGTAAGACCCGATGACTACGTGTGGAGATTATGT-T
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCT
* *
49214388 CGGGTAAGACCCGATGACTACGTGTAGAGATTATGTCC
1 -GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCT
49214426 GGGTAAGAC
1 GGGTAAGAC
49214435 TTCGTAATAA
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
36 1 0.01
37 76 0.99
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCT
Found at i:49220584 original size:41 final size:43
Alignment explanation
Indices: 49220539--49220628 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 43
49220529 TGAATATAAC
* * *
49220539 AATATAAATT-ACATAA-TACATATATAAT-AATATTTCATGCA
1 AATATAAATTAAAATAACAACATAAATAATCAAT-TTTCATGCA
* *
49220580 AATATAACTTAAAATAACAACATAAATAATCAATTTTCATGCG
1 AATATAAATTAAAATAACAACATAAATAATCAATTTTCATGCA
49220623 AATATA
1 AATATA
49220629 TAAAAACAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
41 9 0.22
42 5 0.12
43 24 0.59
44 3 0.07
ACGTcount: A:0.52, C:0.11, G:0.03, T:0.33
Consensus pattern (43 bp):
AATATAAATTAAAATAACAACATAAATAATCAATTTTCATGCA
Found at i:49220992 original size:7 final size:7
Alignment explanation
Indices: 49220980--49221045 Score: 55
Period size: 7 Copynumber: 9.1 Consensus size: 7
49220970 AATTATACAT
49220980 AATAATA
1 AATAATA
49220987 AATAATA
1 AATAATA
49220994 AATAATTA
1 AATAA-TA
*
49221002 TATAATA
1 AATAATA
*
49221009 TATAAT-
1 AATAATA
49221015 AA-AATA
1 AATAATA
*
49221021 AAAAATA
1 AATAATA
49221028 TAATGAATA
1 -AAT-AATA
49221037 AATATATA
1 AATA-ATA
49221045 A
1 A
49221046 TAAAATGATA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
5 3 0.06
6 3 0.06
7 25 0.50
8 15 0.30
9 4 0.08
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:49221008 original size:15 final size:14
Alignment explanation
Indices: 49220980--49221128 Score: 93
Period size: 15 Copynumber: 10.8 Consensus size: 14
49220970 AATTATACAT
*
49220980 AATAATAAATAATA
1 AATAATATATAATA
49220994 AATAATTATATAATA
1 AATAA-TATATAATA
*
49221009 TATAATA-A-AATA
1 AATAATATATAATA
*
49221021 AA-AA-ATATAATG
1 AATAATATATAATA
49221033 AATAAATATATAATAA
1 AAT-AATATATAAT-A
*
49221049 AATGATATATAAT-
1 AATAATATATAATA
* *
49221062 AA-AATGTATAAATC
1 AATAATATAT-AATA
*
49221076 AA-AATATATATGTA
1 AATAATATATA-ATA
49221090 AATAATATCATAAATA
1 AATAATAT-AT-AATA
49221106 ATATAA-A-ATAA-A
1 A-ATAATATATAATA
49221118 AATAATATATA
1 AATAATATATA
49221129 TAATAATTTT
Statistics
Matches: 107, Mismatches: 12, Indels: 33
0.70 0.08 0.22
Matches are distributed among these distances:
10 1 0.01
11 7 0.07
12 18 0.17
13 12 0.11
14 22 0.21
15 33 0.31
16 9 0.08
17 5 0.05
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (14 bp):
AATAATATATAATA
Found at i:49221018 original size:47 final size:47
Alignment explanation
Indices: 49220967--49221134 Score: 124
Period size: 47 Copynumber: 3.4 Consensus size: 47
49220957 TACAAATTTT
* * *
49220967 TAAAATTATACATAATAATAAAT-AATAAATAATTATATAATATATAA
1 TAAAATTATAAAT-ATAATAAATAAATAAATAATAAAATAATATATAA
* * * * *
49221014 TAAAATAAAAAATATAATGAATAAATATATAATAAAATGATATATAA
1 TAAAATTATAAATATAATAAATAAATAAATAATAAAATAATATATAA
* * *
49221061 TAAAATGTATAAATCAAAATATATATGTAAATAATATCAT-AAATAATATAAAA
1 TAAAAT-TATAAAT-ATAATA-A-A--TAAATAA-ATAATAAAATAATATATAA
* *
49221114 TAAAAATAATATATATAATAA
1 T-AAAATTATAAATATAATAA
49221135 TTTTTACATA
Statistics
Matches: 93, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
46 8 0.09
47 36 0.39
48 5 0.05
49 4 0.04
50 1 0.01
51 2 0.02
52 5 0.05
53 23 0.25
54 9 0.10
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (47 bp):
TAAAATTATAAATATAATAAATAAATAAATAATAAAATAATATATAA
Found at i:49221135 original size:12 final size:12
Alignment explanation
Indices: 49220973--49221135 Score: 54
Period size: 12 Copynumber: 13.1 Consensus size: 12
49220963 TTTTTAAAAT
*
49220973 TATACATAATAA
1 TATATATAATAA
*
49220985 TAAATAATAAATAA
1 TATAT-AT-AATAA
49220999 T-TATATAAT-A
1 TATATATAATAA
*
49221009 TATAATAAAATAA
1 TAT-ATATAATAA
* *
49221022 AAAATATAATGAA
1 TATATATAAT-AA
49221035 TAAATATATAATAAAA
1 T--ATATATAAT--AA
49221051 TGATATATAATAA
1 T-ATATATAATAA
* *
49221064 AATGTATAAATCAA
1 TATATAT-AAT-AA
* *
49221078 AATATATATGTAA
1 TATATATA-ATAA
*
49221091 -ATAATATCATAA
1 TAT-ATATAATAA
49221103 -ATAATATAA-AA
1 TAT-ATATAATAA
49221114 TA-A-A-AATAA
1 TATATATAATAA
49221123 TATATATAATAA
1 TATATATAATAA
49221135 T
1 T
49221136 TTTTACATAC
Statistics
Matches: 115, Mismatches: 18, Indels: 36
0.68 0.11 0.21
Matches are distributed among these distances:
8 2 0.02
9 5 0.04
10 4 0.03
11 7 0.06
12 42 0.37
13 20 0.17
14 15 0.13
15 17 0.15
16 3 0.03
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (12 bp):
TATATATAATAA
Found at i:49221207 original size:16 final size:17
Alignment explanation
Indices: 49221171--49221213 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
49221161 AGTAAAATAA
*
49221171 ATAAAATATATAATATT
1 ATAAAATAAATAATATT
49221188 -TAAAATAAATAA-ATT
1 ATAAAATAAATAATATT
*
49221203 ATAAAAAAAAT
1 ATAAAATAAAT
49221214 TAAAAAGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 3 0.13
16 20 0.87
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAAATAAATAATATT
Found at i:49223391 original size:13 final size:13
Alignment explanation
Indices: 49223373--49223397 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49223363 GAATAAAAAG
49223373 TTACCAAAATGCT
1 TTACCAAAATGCT
49223386 TTACCAAAATGC
1 TTACCAAAATGC
49223398 CCTTGAACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (13 bp):
TTACCAAAATGCT
Found at i:49224513 original size:18 final size:18
Alignment explanation
Indices: 49224490--49224533 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
49224480 GGGGTGAGTT
49224490 TGGAAAACTCAGTGTGTA
1 TGGAAAACTCAGTGTGTA
49224508 TGGAAAACTCAGTGTGTA
1 TGGAAAACTCAGTGTGTA
*
49224526 TAGAAAAC
1 TGGAAAAC
49224534 CCATCCAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (18 bp):
TGGAAAACTCAGTGTGTA
Found at i:49225013 original size:65 final size:65
Alignment explanation
Indices: 49224909--49225039 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
49224899 AGTCCCATGC
**
49224909 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAAAAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
49224974 ATCAGATAATAATAACATGGCATGCAAAAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAAAAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
49225039 A
1 A
49225040 ACCCTAGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.24
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAAAAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:49225071 original size:26 final size:26
Alignment explanation
Indices: 49225042--49225092 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
49225032 CAACCTTAAC
* *
49225042 CCTAGGGGTATATCAGTAATTTTTCT
1 CCTAGGGGTAAATCAGTAAATTTTCT
*
49225068 CCTAGGGGTAAATCTGTAAATTTTC
1 CCTAGGGGTAAATCAGTAAATTTTC
49225093 CACCTAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAAATTTTCT
Found at i:49225098 original size:27 final size:26
Alignment explanation
Indices: 49225042--49225098 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
49225032 CAACCTTAAC
* * *
49225042 CCTAGGGGTATATCAGTAATTTTTCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
49225068 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
49225095 CCTA
1 CCTA
49225099 AAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:49233634 original size:28 final size:28
Alignment explanation
Indices: 49233594--49233655 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
49233584 ATGTACTAGA
*
49233594 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
49233622 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
49233650 ATACCC
1 ATACCC
49233656 TAGGGTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:49233821 original size:27 final size:27
Alignment explanation
Indices: 49233763--49233852 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
49233753 AGGAAGCGTC
49233763 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
49233791 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
49233818 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
49233847 CTGGTG
1 CTGGTG
49233853 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:49233871 original size:55 final size:56
Alignment explanation
Indices: 49233763--49233877 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
49233753 AGGAAGCGTC
* *
49233763 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
49233818 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
49233874 CTGG
1 CTGG
49233878 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:49234964 original size:11 final size:10
Alignment explanation
Indices: 49234936--49234969 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
49234926 AGCCTGTAAG
49234936 TATTCTGAAT
1 TATTCTGAAT
*
49234946 TTTTCTGAAT
1 TATTCTGAAT
49234956 ATATTCTGAAT
1 -TATTCTGAAT
49234967 TAT
1 TAT
49234970 CTGTCTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:49241480 original size:40 final size:39
Alignment explanation
Indices: 49241423--49241607 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
49241413 ATTAAATGAT
* * *
49241423 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
49241463 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
49241503 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
49241543 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
49241583 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
49241608 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:49241559 original size:80 final size:80
Alignment explanation
Indices: 49241422--49241628 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
49241412 AATTAAATGA
* * ** * *
49241422 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
49241487 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
49241500 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
49241565 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
49241582 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
49241629 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:49241613 original size:40 final size:39
Alignment explanation
Indices: 49241421--49241628 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
49241411 CAATTAAATG
* * ** *
49241421 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
49241461 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
49241501 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
49241541 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
49241581 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
49241621 ATATCCGG
1 ATATCCGG
49241629 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:49245690 original size:40 final size:39
Alignment explanation
Indices: 49245633--49245817 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
49245623 ATTAAATGAT
* * *
49245633 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
49245673 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
49245713 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
49245753 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
49245793 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
49245818 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:49245769 original size:80 final size:80
Alignment explanation
Indices: 49245632--49245838 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
49245622 AATTAAATGA
* * ** * *
49245632 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
49245697 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
49245710 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
49245775 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
49245792 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
49245839 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:49245823 original size:40 final size:39
Alignment explanation
Indices: 49245631--49245838 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
49245621 CAATTAAATG
* * ** *
49245631 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
49245671 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
49245711 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
49245751 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
49245791 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
49245831 ATATCCGG
1 ATATCCGG
49245839 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:49248428 original size:28 final size:28
Alignment explanation
Indices: 49248388--49248449 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
49248378 ATGTACTAGA
*
49248388 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
49248416 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
49248444 ATACCC
1 ATACCC
49248450 TTAGGGTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:49248616 original size:27 final size:27
Alignment explanation
Indices: 49248558--49248647 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
49248548 AGGAAGCGTC
49248558 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
49248586 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
49248613 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
49248642 CTGGTG
1 CTGGTG
49248648 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:49248666 original size:55 final size:56
Alignment explanation
Indices: 49248558--49248672 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
49248548 AGGAAGCGTC
* *
49248558 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
49248613 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
49248669 CTGG
1 CTGG
49248673 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:49249754 original size:11 final size:10
Alignment explanation
Indices: 49249726--49249759 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
49249716 AGCCTGTAAG
49249726 TATTCTGAAT
1 TATTCTGAAT
*
49249736 TTTTCTGAAT
1 TATTCTGAAT
49249746 ATATTCTGAAT
1 -TATTCTGAAT
49249757 TAT
1 TAT
49249760 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:49255978 original size:16 final size:15
Alignment explanation
Indices: 49255952--49255983 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
49255942 GCTAGATCGG
49255952 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
49255967 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
49255983 C
1 C
49255984 GGTATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:49256261 original size:28 final size:28
Alignment explanation
Indices: 49256221--49256282 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
49256211 TACTAGAATG
*
49256221 CCCCTATGTATGCAAAATTACCATTATA
1 CCCCTATGTATGCAAAATGACCATTATA
*
49256249 CCCCTATGTATGCAAAATGACCTTTATA
1 CCCCTATGTATGCAAAATGACCATTATA
49256277 CCCCTA
1 CCCCTA
49256283 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.31
Consensus pattern (28 bp):
CCCCTATGTATGCAAAATGACCATTATA
Found at i:49256426 original size:27 final size:27
Alignment explanation
Indices: 49256388--49256476 Score: 142
Period size: 27 Copynumber: 3.2 Consensus size: 27
49256378 AGGAAGCGTC
49256388 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCCCTGCCACATATATCTGTT
49256415 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCCCTGCCACATATATCTGTT
* *
49256442 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCCCTGCCAC-ATATATCTGT-T
49256471 CTGGTG
1 CTGGTG
49256477 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 42 0.72
28 9 0.16
29 7 0.12
ACGTcount: A:0.18, C:0.27, G:0.24, T:0.31
Consensus pattern (27 bp):
CTGGTGGCCCTGCCACATATATCTGTT
Found at i:49256501 original size:56 final size:54
Alignment explanation
Indices: 49256388--49256501 Score: 140
Period size: 56 Copynumber: 2.1 Consensus size: 54
49256378 AGGAAGCGTC
* * *
49256388 CTGGTGGCCCTGCCACATATATCTGTTCTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTT
* * *
49256442 CTGGTGGCACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-TCTGGTGACCCTGCCACATATATCTGT-T
49256498 CTGG
1 CTGG
49256502 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
54 15 0.29
55 15 0.29
56 21 0.41
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (54 bp):
CTGGTGGCACTGCCACAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTT
Found at i:49260218 original size:16 final size:16
Alignment explanation
Indices: 49260194--49260226 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
49260184 GTAAAAAATA
49260194 ACAAATTTTATGTACC
1 ACAAATTTTATGTACC
*
49260210 ACAAGTTTTATGTACC
1 ACAAATTTTATGTACC
49260226 A
1 A
49260227 ATCGTGCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (16 bp):
ACAAATTTTATGTACC
Found at i:49262979 original size:40 final size:40
Alignment explanation
Indices: 49262920--49263061 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
49262910 AAATTGAATG
* * *
49262920 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
49262960 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
49263000 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
49263040 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
49263062 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:49263062 original size:40 final size:39
Alignment explanation
Indices: 49262959--49263087 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
49262949 TGCTGGAAAT
* * *
49262959 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
49262999 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
49263039 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
49263079 TATATCCGG
1 TATATCCGG
49263088 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:49270990 original size:40 final size:40
Alignment explanation
Indices: 49270924--49271090 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
49270914 AAATTGAATG
* * *
49270924 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
49270963 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
49271003 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
49271043 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
49271083 ATATCCGG
1 ATATCCGG
49271091 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:49275464 original size:35 final size:34
Alignment explanation
Indices: 49275418--49275490 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
49275408 AATGATGTTA
* ** *
49275418 AATTGAATATATTTATTATGTACATAGCTGAATTG
1 AATTGAATATATGTA-TAACTACATAGCCGAATTG
* *
49275453 AATTGTATATATGTATAACTACATTGCCGAATTG
1 AATTGAATATATGTATAACTACATAGCCGAATTG
49275487 AATT
1 AATT
49275491 TGGCATGGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 19 0.59
35 13 0.41
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (34 bp):
AATTGAATATATGTATAACTACATAGCCGAATTG
Found at i:49276363 original size:22 final size:23
Alignment explanation
Indices: 49276299--49276384 Score: 79
Period size: 23 Copynumber: 3.7 Consensus size: 23
49276289 TACCGATATA
*
49276299 TCAGCTC-ATAAGAGCTTACTGTTT
1 TCAGCTCAAT-AGAGTTTACTG-TT
* * *
49276323 TCAGCTCGTATGGA-CTTACTGTT
1 TCAGCTC-AATAGAGTTTACTGTT
49276346 T-AGCTCAATAGAGTTTACTGTT
1 TCAGCTCAATAGAGTTTACTGTT
*
49276368 TCAGTTCAATAGAGTTT
1 TCAGCTCAATAGAGTTT
49276385 GTTGTTCATC
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
21 4 0.08
22 14 0.26
23 17 0.32
24 14 0.26
25 2 0.04
26 2 0.04
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (23 bp):
TCAGCTCAATAGAGTTTACTGTT
Found at i:49288782 original size:30 final size:30
Alignment explanation
Indices: 49288738--49288826 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
49288728 CAAAGATAAC
*
49288738 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
49288767 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
49288797 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
49288827 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:49288786 original size:15 final size:14
Alignment explanation
Indices: 49288738--49288820 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
49288728 CAAAGATAAC
*
49288738 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
49288752 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
49288767 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
49288782 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
49288797 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
49288812 AAGAAACCC
1 AAGAAACCC
49288821 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:49288826 original size:15 final size:15
Alignment explanation
Indices: 49288749--49288826 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
49288739 AGAAAACCGA
49288749 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
49288764 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
49288778 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
49288793 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
49288809 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
49288824 ATA
1 ATA
49288827 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:49303315 original size:19 final size:19
Alignment explanation
Indices: 49303291--49303328 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
49303281 AAACACAACT
49303291 AAGAATCAATCTAAATATG
1 AAGAATCAATCTAAATATG
49303310 AAGAATCAATCTAAATATG
1 AAGAATCAATCTAAATATG
49303329 GCCTGAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (19 bp):
AAGAATCAATCTAAATATG
Found at i:49307134 original size:6 final size:6
Alignment explanation
Indices: 49307104--49307216 Score: 81
Period size: 6 Copynumber: 18.3 Consensus size: 6
49307094 AAGAAACATT
* * *
49307104 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
49307153 ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
49307203 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
49307217 GTGAATGCAA
Statistics
Matches: 84, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
5 5 0.06
6 67 0.80
7 9 0.11
8 3 0.04
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:49307158 original size:25 final size:25
Alignment explanation
Indices: 49307125--49307216 Score: 157
Period size: 25 Copynumber: 3.7 Consensus size: 25
49307115 AATCAAAATG
49307125 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
49307150 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
49307175 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
49307200 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
49307217 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.46, C:0.14, G:0.22, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:49307374 original size:27 final size:26
Alignment explanation
Indices: 49307334--49307441 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
49307324 AGCATGGCCG
* *
49307334 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
49307360 CCAGATACAGATATTGTGGTAGAGCCT
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
49307387 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
49307414 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCAGAGCCA
49307441 C
1 C
49307442 TTAATAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 12 0.17
27 50 0.71
28 8 0.11
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:49307628 original size:22 final size:21
Alignment explanation
Indices: 49307600--49307664 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
49307590 GCAAATACGT
49307600 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
49307622 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
49307644 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
49307665 AATAATTGGC
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:49308154 original size:54 final size:54
Alignment explanation
Indices: 49308052--49308193 Score: 187
Period size: 54 Copynumber: 2.6 Consensus size: 54
49308042 GGGGCAAAAT
* * *
49308052 GGTAATTTTACCCCACAAGGGTATCTT-GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTAT-TTCGATAATTCTACCCTACAGGGGTATTTC
* *
49308106 GGTATTTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * *
49308160 GGTAATTCTACCCTATAAAGGTACTTCGATAATT
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATT
49308194 TTGTAAATCG
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.03
54 75 0.97
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:49308182 original size:27 final size:27
Alignment explanation
Indices: 49308051--49308174 Score: 149
Period size: 27 Copynumber: 4.6 Consensus size: 27
49308041 AGGGGCAAAA
* * *
49308051 TGGTAATTTTACCCCACAAGGGTATCT
1 TGGTAATTCTACCCTACAAGGGTATTT
* *
49308078 TGGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* * *
49308105 CGGTATTTTTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* * *
49308132 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
49308159 TGGTAATTCTACCCTA
1 TGGTAATTCTACCCTA
49308175 TAAAGGTACT
Statistics
Matches: 81, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAAGGGTATTT
Found at i:49308192 original size:27 final size:27
Alignment explanation
Indices: 49308054--49308193 Score: 138
Period size: 27 Copynumber: 5.2 Consensus size: 27
49308044 GGCAAAATGG
* * *
49308054 TAATTTTACCCCACAAGGGTATCTT-GG
1 TAATTCTACCCTACAAGGGTAT-TTCGA
* * *
49308081 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
49308108 TATTTTTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
49308135 TAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
49308162 TAATTCTACCCTATAAAGGTACTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
49308189 TAATT
1 TAATT
49308194 TTGTAAATCG
Statistics
Matches: 92, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
26 2 0.02
27 90 0.98
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:49308209 original size:27 final size:27
Alignment explanation
Indices: 49308179--49308276 Score: 72
Period size: 27 Copynumber: 3.6 Consensus size: 27
49308169 ACCCTATAAA
49308179 GGTACTTCGATAATTTTGTAAATCGAG
1 GGTACTTCGATAATTTTGTAAATCGAG
*** * * *
49308206 GGTAAAACGGTAATTCTGTAAATCGGG
1 GGTACTTCGATAATTTTGTAAATCGAG
* * ** *
49308233 GGTACTTTGGTAATTTTACAAGTCGAG
1 GGTACTTCGATAATTTTGTAAATCGAG
*
49308260 GGTATTTC-AGTAATTTT
1 GGTACTTCGA-TAATTTT
49308277 ACAGGTCGAG
Statistics
Matches: 52, Mismatches: 18, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (27 bp):
GGTACTTCGATAATTTTGTAAATCGAG
Found at i:49308220 original size:81 final size:81
Alignment explanation
Indices: 49308047--49308222 Score: 176
Period size: 81 Copynumber: 2.2 Consensus size: 81
49308037 CCCTAGGGGC
* * ** * *
49308047 AAAATGGTAATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAGGGGTATTTCGGTATT
1 AAAACGGTAATTCTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAAAGGTACTTCGATATT
**
49308112 TTTACCCTACAAGGGT
66 TTTACAATACAAGGGT
*** * * * *
49308128 ATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTATAAAGGTACTTCGATAAT
1 AAAACGGTAATTCTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAAAGGTACTTCGAT-AT
*
49308193 TTTGTA-AAT-CGAGGGT
65 TTT-TACAATACAAGGGT
49308209 AAAACGGTAATTCT
1 AAAACGGTAATTCT
49308223 GTAAATCGGG
Statistics
Matches: 73, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
81 65 0.89
82 6 0.08
83 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (81 bp):
AAAACGGTAATTCTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAAAGGTACTTCGATATT
TTTACAATACAAGGGT
Found at i:49308430 original size:81 final size:81
Alignment explanation
Indices: 49308232--49308437 Score: 234
Period size: 81 Copynumber: 2.5 Consensus size: 81
49308222 TGTAAATCGG
* ** ** * *** *
49308232 GGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAGTAATTTTACAGGTCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTCA
** *
49308296 GTAATTTCACAAATTAG
65 GTAATTTCACAAACCAA
* *
49308313 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTCAG
*
49308378 TAATTTTACAAACCAA
66 TAATTTCACAAACCAA
* *
49308394 GGGTATTTTGGTAATTTTACAAACCAGGGGTGTTTTGGTGATTT
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
49308438 GGTAAACTAA
Statistics
Matches: 105, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTCAG
TAATTTCACAAACCAA
Found at i:49308444 original size:27 final size:27
Alignment explanation
Indices: 49308232--49308437 Score: 205
Period size: 27 Copynumber: 7.6 Consensus size: 27
49308222 TGTAAATCGG
* ** *
49308232 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** *** *
49308259 GGGTATTTCAGTAATTTTACAGGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * ** *
49308286 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
49308313 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
49308340 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
49308367 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
49308394 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
49308421 GGGTGTTTTGGTGATTT
1 GGGTATTTTGGTAATTT
49308438 GGTAAACTAA
Statistics
Matches: 156, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:49309958 original size:22 final size:22
Alignment explanation
Indices: 49309933--49309978 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
49309923 AACATTCTTA
*
49309933 ACAACTTTGTAAAAATCTTGGC
1 ACAACTTTGTAAAAATCTTAGC
49309955 ACAACTTTGTAAAAATCTTAGC
1 ACAACTTTGTAAAAATCTTAGC
49309977 AC
1 AC
49309979 TTGCAAAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (22 bp):
ACAACTTTGTAAAAATCTTAGC
Found at i:49310477 original size:25 final size:25
Alignment explanation
Indices: 49310441--49310532 Score: 130
Period size: 25 Copynumber: 3.7 Consensus size: 25
49310431 AATCAAAATG
*
49310441 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATTAGGTGAC
* * *
49310466 AGCATCAAAATCATAATTAGGTGAC
1 AGAATCAGAATCAGAATTAGGTGAC
* *
49310491 AGAATCAGAATCAGTATTAGGTAAC
1 AGAATCAGAATCAGAATTAGGTGAC
49310516 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
49310533 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 57 1.00
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATTAGGTGAC
Found at i:49310758 original size:27 final size:27
Alignment explanation
Indices: 49310654--49310758 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
49310644 TGGCCGCCAG
* * *
49310654 AACAGATATTGTGACAGAGTCACCAGA
1 AACAGATATTGTGGCAGAGCCACTAGA
* * *
49310681 TACAGATATTGTGGTAGAGCCTCTAG-
1 AACAGATATTGTGGCAGAGCCACTAGA
*
49310707 AACAGATATTTGTGGCATAGCCACTAGA
1 AACAGATA-TTGTGGCAGAGCCACTAGA
* *
49310735 AACAGATAATGTGGCAAAGCCACT
1 AACAGATATTGTGGCAGAGCCACT
49310759 TAATAGAATA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.77
28 8 0.12
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (27 bp):
AACAGATATTGTGGCAGAGCCACTAGA
Found at i:49310950 original size:22 final size:22
Alignment explanation
Indices: 49310916--49310979 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
49310906 GCAAATACGT
* *
49310916 TTGGCCCATAGCCATAATCAAG
1 TTGGCACAAAGCCATAATCAAG
* * *
49310938 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAAG
*
49310960 TTGGCGCAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
49310980 GAATAATTGG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAAG
Found at i:49311406 original size:27 final size:27
Alignment explanation
Indices: 49311384--49311509 Score: 153
Period size: 27 Copynumber: 4.7 Consensus size: 27
49311374 TTTACCCCAT
* *
49311384 AAGGGTATCTCGGTAATTCTACCATAC
1 AAGGGTATTTCGGTAATTCTACCCTAC
* * * *
49311411 ATGGGTGTTTCGATATTTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTAC
* *
49311438 AAGGGTATTTCCGTAATTCTACCTTAC
1 AAGGGTATTTCGGTAATTCTACCCTAC
* *
49311465 AGGGGTATTTCGATAATTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTAC
*
49311492 AAGGGTATTTTGGTAATT
1 AAGGGTATTTCGGTAATT
49311510 TTGTAAATCG
Statistics
Matches: 80, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTCTACCCTAC
Found at i:49311508 original size:54 final size:54
Alignment explanation
Indices: 49311384--49311509 Score: 189
Period size: 54 Copynumber: 2.3 Consensus size: 54
49311374 TTTACCCCAT
* * * *
49311384 AAGGGTATCTCGGTAATTCTACCATACATGGGTGTTTCGATATTTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCGATAATTCTACCCTAC
* *
49311438 AAGGGTATTTCCGTAATTCTACCTTACAGGGGTATTTCGATAATTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCGATAATTCTACCCTAC
*
49311492 AAGGGTATTTTGGTAATT
1 AAGGGTATTTCGGTAATT
49311510 TTGTAAATCG
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTCTACCATACAGGGGTATTTCGATAATTCTACCCTAC
Found at i:49311523 original size:27 final size:26
Alignment explanation
Indices: 49311493--49311807 Score: 227
Period size: 27 Copynumber: 11.7 Consensus size: 26
49311483 CTACCCTACA
**
49311493 AGGGTATTTTGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAA-CG
**** *
49311520 AGGGTAAAACGGTAATTCTGTA-AATCG
1 AGGGTATTTTGGTAATT-T-TACAAACG
* * * *
49311547 GGGGTACTTTGGTTATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAA-ACG
** **
49311574 AGGGTATTTCAGTAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACA-AACG
* *
49311601 AGGGTATTTTGATAATTTTACAAACT
1 AGGGTATTTTGGTAATTTTACAAACG
49311627 AGGGGTATTTTGGTAATTTTACAAACTG
1 A-GGGTATTTTGGTAATTTTACAAAC-G
* * *
49311655 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAA-CG
* * * *
49311682 AGGGTATTTTAGTAATTTTATAAGCCA
1 AGGGTATTTTGGTAATTTTACAA-ACG
* *
49311709 AGGGTATTTTGATAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACG
* ** *
49311735 AGTGGTATTTTAGTAATTTTGTAAACCA
1 AG-GGTATTTTGGTAATTTTACAAA-CG
*
49311763 AGGGTATTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACG
*
49311789 AGGGGTATTTTGGTGATTT
1 A-GGGTATTTTGGTAATTT
49311808 GGTAAACTAA
Statistics
Matches: 229, Mismatches: 47, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
25 2 0.01
26 10 0.04
27 209 0.91
28 7 0.03
29 1 0.00
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACG
Found at i:49311632 original size:81 final size:80
Alignment explanation
Indices: 49311547--49311807 Score: 299
Period size: 81 Copynumber: 3.2 Consensus size: 80
49311537 CTGTAAATCG
* * * * * *** *
49311547 GGGGTACTTTGGTTATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAGGTCGAGGGTATTTTG
1 GGGGTATTTTGGTAATTTTACAA-ACGAGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTTG
*
49311612 ATAATTTTACAAACTA
65 ATAATTTTACAAACCA
* *
49311628 GGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTT-
1 GGGGTATTTTGGTAATTTTACAAAC-GAGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTTG
* *
49311692 AGTAATTTTATAAGCCA
65 A-TAATTTTACAAACCA
* * * *
49311709 AGGGTATTTTGATAATTTTACAAACCAGTGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTTG
1 GGGGTATTTTGGTAATTTTACAAACGAG-GGTATTTTAGTAATTTTATAAACCAAGGGTATTTTG
*
49311774 GTAATTTTACAAACCA
65 ATAATTTTACAAACCA
*
49311790 GGGGTATTTTGGTGATTT
1 GGGGTATTTTGGTAATTT
49311808 GGTAAACTAA
Statistics
Matches: 150, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
80 3 0.02
81 147 0.98
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (80 bp):
GGGGTATTTTGGTAATTTTACAAACGAGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTTGA
TAATTTTACAAACCA
Found at i:49311814 original size:27 final size:27
Alignment explanation
Indices: 49311602--49311807 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
49311592 TACAGGTCGA
* * *
49311602 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* **
49311629 GGGTATTTTGGTAATTTTACAAACTGG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
49311656 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
49311683 GGGTATTTTAGTAATTTTATAAGCCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
49311710 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * * *
49311737 TGGTATTTTAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
*
49311764 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
49311791 GGGTATTTTGGTGATTT
1 GGGTATTTTGGTAATTT
49311808 GGTAAACTAA
Statistics
Matches: 154, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 154 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:49311814 original size:54 final size:54
Alignment explanation
Indices: 49311601--49311799 Score: 281
Period size: 54 Copynumber: 3.7 Consensus size: 54
49311591 TTACAGGTCG
* * * **
49311601 AGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTG
1 AGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACCA
* * * * *
49311655 GGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAGCCA
1 AGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACCA
* *
49311709 AGGGTATTTTGATAATTTTACAAACCAGTGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACCA
*
49311763 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 AGGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
49311800 GGTGATTTGG
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 126 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTATAAACCA
Found at i:49318449 original size:29 final size:29
Alignment explanation
Indices: 49318417--49318494 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
49318407 ATACCCTCCG
** *
49318417 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
49318446 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
49318475 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
49318495 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:49325098 original size:49 final size:49
Alignment explanation
Indices: 49324994--49325495 Score: 802
Period size: 49 Copynumber: 10.3 Consensus size: 49
49324984 ATGCATGAGA
49324994 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49325043 TATATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTG
1 --TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
49325094 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49325143 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49325192 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49325241 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49325290 TGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
49325338 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49325385 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
49325434 --TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
49325481 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
49325496 TCCCGAAGGT
Statistics
Matches: 427, Mismatches: 19, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
46 16 0.04
47 78 0.18
48 31 0.07
49 254 0.59
51 48 0.11
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:49327569 original size:28 final size:28
Alignment explanation
Indices: 49327523--49327591 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
49327513 TTTAAAACCC
*
49327523 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
49327550 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
49327578 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
49327592 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Done.