Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 161 of 433
Found at i:50177315 original size:29 final size:29
Alignment explanation
Indices: 50177265--50177320 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
50177255 ATATTATATC
*
50177265 AAATCTAAAATATATGATAATTTATAAATA
1 AAATCTAAAATATATGA-AAATTATAAATA
*
50177295 AAATTTAAAA-ATATGAAAATTATAAA
1 AAATCTAAAATATATGAAAATTATAAA
50177321 GGGACGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 9 0.38
29 6 0.25
30 9 0.38
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.34
Consensus pattern (29 bp):
AAATCTAAAATATATGAAAATTATAAATA
Found at i:50181346 original size:53 final size:53
Alignment explanation
Indices: 50181266--50181366 Score: 148
Period size: 53 Copynumber: 1.9 Consensus size: 53
50181256 TAAATAATTA
* * * *
50181266 TTACTTGAATAATTATATTTATTTAAGAGATATTACTTGAATAGTTATATTTC
1 TTACTTGAATAATTATATCTATGTAAGAGATATTAATTGAATAATTATATTTC
* *
50181319 TTACTTTAATAGTTATATCTATGTAAGAGATATTAATTGAATAATTAT
1 TTACTTGAATAATTATATCTATGTAAGAGATATTAATTGAATAATTAT
50181367 GTTTATTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 42 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.48
Consensus pattern (53 bp):
TTACTTGAATAATTATATCTATGTAAGAGATATTAATTGAATAATTATATTTC
Found at i:50185833 original size:35 final size:35
Alignment explanation
Indices: 50185787--50185861 Score: 141
Period size: 35 Copynumber: 2.1 Consensus size: 35
50185777 TCATTCACAT
50185787 ACATTTATGCAATTATCATCTTAAACTATTCTCAA
1 ACATTTATGCAATTATCATCTTAAACTATTCTCAA
*
50185822 ACATTTATGCAATTATTATCTTAAACTATTCTCAA
1 ACATTTATGCAATTATCATCTTAAACTATTCTCAA
50185857 ACATT
1 ACATT
50185862 CACATTGTCC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.37, C:0.19, G:0.03, T:0.41
Consensus pattern (35 bp):
ACATTTATGCAATTATCATCTTAAACTATTCTCAA
Found at i:50193788 original size:27 final size:27
Alignment explanation
Indices: 50193664--50193789 Score: 134
Period size: 27 Copynumber: 4.7 Consensus size: 27
50193654 TTAGTTTACC
*
50193664 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACTGAAATACCCTCAGTTTGTA
* *
50193690 AAATTACT-AAAGTACCCCCAGTTTATA
1 AAATTACTGAAA-TACCCTCAGTTTGTA
** *
50193717 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACTGAAATACCCTCAG-TTTGTA
*
50193744 AAATTA-TCGAAATACCCTCAGTTTGCA
1 AAATTACT-GAAATACCCTCAGTTTGTA
50193771 AAATTACTGAAATACCCTC
1 AAATTACTGAAATACCCTC
50193790 GATCAATAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
25 3 0.04
26 18 0.21
27 58 0.69
28 5 0.06
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAGTTTGTA
Found at i:50193811 original size:54 final size:54
Alignment explanation
Indices: 50193688--50193811 Score: 131
Period size: 54 Copynumber: 2.3 Consensus size: 54
50193678 CCCCCAGTTG
* * * * ***
50193688 TAAAATTACTAAAGTACCCCCAGTTTATAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCAAAATACCCCCAGTTTACAAAATTACCCAAATACCCTCGATCAA
* * * * **
50193742 TAAAATTATCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATCAA
1 TAAAATTACCAAAATACCCCCAGTTTACAAAATTACCCAAATACCCTCGATCAA
50193796 TAAAATTACCAAAATA
1 TAAAATTACCAAAATA
50193812 TTTTGTAAAA
Statistics
Matches: 55, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCCCAGTTTACAAAATTACCCAAATACCCTCGATCAA
Found at i:50193877 original size:27 final size:27
Alignment explanation
Indices: 50193847--50194365 Score: 761
Period size: 27 Copynumber: 19.3 Consensus size: 27
50193837 TGGTTTACAA
50193847 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50193874 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50193901 AATTACCGGAATACCCCTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50193928 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50193955 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50193982 AATTATCGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50194009 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50194036 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50194063 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50194090 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
50194117 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50194144 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50194171 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50194198 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50194225 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
50194252 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
50194279 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
50194306 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
50194333 AATTGCCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
50194359 AATTACC
1 AATTACC
50194366 ATTTTGCCTC
Statistics
Matches: 454, Mismatches: 38, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
26 15 0.03
27 439 0.97
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:50194844 original size:22 final size:22
Alignment explanation
Indices: 50194792--50194856 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
50194782 TTAAAGCCTT
* *
50194792 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
50194814 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
50194836 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
50194857 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:50195095 original size:27 final size:26
Alignment explanation
Indices: 50195015--50195116 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 26
50195005 ATTCTGTTAA
* * *
50195015 GTGGCTTTGCCACATTATCTGTTTCTA
1 GTGGCTATGCCACAATATCTG-TTCTG
50195042 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* *
50195069 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTGT-TCTG
* * * *
50195096 GTGACTTTGTCATAATATCTG
1 GTGGCTATGCCACAATATCTG
50195117 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 8 0.13
27 48 0.76
28 7 0.11
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:50195291 original size:6 final size:6
Alignment explanation
Indices: 50195253--50195341 Score: 67
Period size: 6 Copynumber: 14.3 Consensus size: 6
50195243 TTGCATTCAC
* *
50195253 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
50195303 -TCACCTG ATTCTG ATTTTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
50195342 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 18
0.72 0.09 0.20
Matches are distributed among these distances:
5 4 0.06
6 48 0.73
7 12 0.18
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:50195302 original size:31 final size:31
Alignment explanation
Indices: 50195253--50195357 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 31
50195243 TTGCATTCAC
*
50195253 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* *
50195285 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
50195316 ATTTTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
50195346 TTTCTTATTCTG
1 ATTCTGATTCTG
50195358 TAATGGGTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
30 16 0.26
31 37 0.60
32 9 0.15
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:50206169 original size:79 final size:82
Alignment explanation
Indices: 50206029--50206213 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
50206019 TCGAATGATG
* * *
50206029 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
50206093 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
50206109 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
50206171 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
50206189 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50206214 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:50206221 original size:40 final size:40
Alignment explanation
Indices: 50206030--50206221 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
50206020 CGAATGATGT
* * * * *
50206030 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
50206070 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
50206110 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
50206149 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
50206189 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
50206222 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:50206244 original size:79 final size:79
Alignment explanation
Indices: 50206029--50206246 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
50206019 TCGAATGATG
* * * * ** *
50206029 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
50206092 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
50206109 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
50206174 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
50206189 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
50206247 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:50214180 original size:79 final size:82
Alignment explanation
Indices: 50214040--50214224 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
50214030 TCGAATGATG
* * *
50214040 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
50214104 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
50214120 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
50214182 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
50214200 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50214225 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:50214232 original size:40 final size:40
Alignment explanation
Indices: 50214041--50214232 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
50214031 CGAATGATGT
* * * * *
50214041 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
50214081 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
50214121 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
50214160 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
50214200 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
50214233 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:50216234 original size:22 final size:22
Alignment explanation
Indices: 50216209--50216272 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 22
50216199 AGAAAAATTT
50216209 ATTCTGAATGGAAATAATTCAA
1 ATTCTGAATGGAAATAATTCAA
** *
50216231 ATTC--AAT-TTAA-AATT--T
1 ATTCTGAATGGAAATAATTCAA
50216247 ATTCTGAATGGAAATAATTCAA
1 ATTCTGAATGGAAATAATTCAA
50216269 ATTC
1 ATTC
50216273 AATTTTTTGG
Statistics
Matches: 30, Mismatches: 6, Indels: 12
0.62 0.12 0.25
Matches are distributed among these distances:
16 4 0.13
18 7 0.23
19 4 0.13
20 7 0.23
22 8 0.27
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (22 bp):
ATTCTGAATGGAAATAATTCAA
Found at i:50216244 original size:38 final size:38
Alignment explanation
Indices: 50216202--50216277 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
50216192 AATTAAAAGA
50216202 AAAATTTATTCTGAATGGAAATAATTCAAATTCAATTT
1 AAAATTTATTCTGAATGGAAATAATTCAAATTCAATTT
50216240 AAAATTTATTCTGAATGGAAATAATTCAAATTCAATTT
1 AAAATTTATTCTGAATGGAAATAATTCAAATTCAATTT
50216278 TTTGGTCCCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (38 bp):
AAAATTTATTCTGAATGGAAATAATTCAAATTCAATTT
Found at i:50226717 original size:23 final size:23
Alignment explanation
Indices: 50226686--50226734 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
50226676 TGCCGAGAGA
* *
50226686 AAGAGTTACTTGGGATTTCTTTC
1 AAGAGTTACCTAGGATTTCTTTC
*
50226709 AAGATTTACCTAGGATTTCTTTC
1 AAGAGTTACCTAGGATTTCTTTC
50226732 AAG
1 AAG
50226735 CTGAGTTCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (23 bp):
AAGAGTTACCTAGGATTTCTTTC
Found at i:50230072 original size:180 final size:181
Alignment explanation
Indices: 50229806--50230154 Score: 497
Period size: 180 Copynumber: 1.9 Consensus size: 181
50229796 ACGGAGCTAA
* * * *
50229806 AAATTAAGATCCGTTAATTTTCCAAGAAACTATAATCACATATATTCTTACCATAAAATTTTTAG
1 AAATTAAGAACCGCTAATTTTCCAAGAAACTAGAATCACATATATTATTACCATAAAATTTTTAG
* * *
50229871 AATTTTTGGTTTAGCCAATTAGTACAGTTTATTTATTAAATTTACCCC-TATTTCACTGCCCAAG
66 AATTTTTGGTTTAGCCAATTAGTACAGTTTATTCATTAAATATACCCCATATTTCACTGCCCAAC
*
50229935 AGTTCTGAT-TTCTCTTCACTAAAAATTATTTATCTCATGATACGAGACTCC
131 AGTTCCGATCTT-TCTTCACTAAAAATTATTTATCTCATGATACGAGACTCC
* * *
50229986 AAATTAAGAACCGCTAATTTTTCCAA-AAATTAGACTTACATATATTATTACCATAAAATTTTTA
1 AAATTAAGAACCGCTAA-TTTTCCAAGAAACTAGAATCACATATATTATTACCATAAAATTTTTA
* * * **
50230050 GAATTTTTGGTTTAGCCAATTAGTATAGTTTATTCATTAAATATACCCCATATTTGACTGTCTGA
65 GAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCATTAAATATACCCCATATTTCACTGCCCAA
* *
50230115 CAGTTCCGATCTTTCTTTAGTAAAAATTATTTATCTCATG
130 CAGTTCCGATCTTTCTTCACTAAAAATTATTTATCTCATG
50230155 GTACAGATCT
Statistics
Matches: 148, Mismatches: 18, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
180 94 0.64
181 52 0.35
182 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (181 bp):
AAATTAAGAACCGCTAATTTTCCAAGAAACTAGAATCACATATATTATTACCATAAAATTTTTAG
AATTTTTGGTTTAGCCAATTAGTACAGTTTATTCATTAAATATACCCCATATTTCACTGCCCAAC
AGTTCCGATCTTTCTTCACTAAAAATTATTTATCTCATGATACGAGACTCC
Found at i:50230779 original size:50 final size:51
Alignment explanation
Indices: 50230714--50231103 Score: 346
Period size: 50 Copynumber: 7.7 Consensus size: 51
50230704 ACCGAAGCTC
* * *
50230714 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAAT
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * * *
50230765 TC-GATACACGTAGTAGCCTGTACTTAGTACTAAACATGTGACTTATCCA-
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * * * * * *
50230814 TCTGATACATGTAGTAGCCTGCACATAATACTACACACGTGATCGA--AGT
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * * * * *
50230863 TAACGGGTACGCATAGTAGCCTGCACTTAGTACTACATATGCGACCTATCAA-
1 T--CTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * * * * *
50230915 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACATATGTAACCTAACCA-
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * *
50230965 TCTGATACACTTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA-
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
* * * * *
50231015 TCTGGTACACGTAATAGCCTACACTTAGTACTACACACGTGACCTA-AAACT
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA-T
* * * *
50231066 GTCTTAAACACATAGTAGCCTGCACATAGTACTACACA
1 -TCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
50231104 GGTGTTCTCA
Statistics
Matches: 271, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
49 5 0.02
50 199 0.73
51 35 0.13
52 31 0.11
53 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (51 bp):
TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAAT
Found at i:50230980 original size:151 final size:151
Alignment explanation
Indices: 50230717--50231001 Score: 446
Period size: 151 Copynumber: 1.9 Consensus size: 151
50230707 GAAGCTCTCT
*
50230717 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATTCGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
* * * *
50230782 CTGTACTTAGTACTAAACATGTGACTTATCCATCTGATACATGTAGTAGCCTGCACATAATACTA
66 CTGCACTTAGTACTAAACATGTAACCTAACCATCTGATACATGTAGTAGCCTGCACATAATACTA
50230847 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACG
* * *
50230868 GGTACGCATAGTAGCCTGCACTTAGTACTACATATGCGACCTATCAATCCGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
* * * *
50230933 CTGCACTTAGTACTACATATGTAACCTAACCATCTGATACACT-TAGTAGCCTGCACTTAGTACT
66 CTGCACTTAGTACTAAACATGTAACCTAACCATCTGATACA-TGTAGTAGCCTGCACATAATACT
50230997 ACACA
130 ACACA
50231002 TGCGACCTAA
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
151 120 0.99
152 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (151 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGATACACGTAGTAGC
CTGCACTTAGTACTAAACATGTAACCTAACCATCTGATACATGTAGTAGCCTGCACATAATACTA
CACACGTGATCGAAGTTAACG
Found at i:50238697 original size:50 final size:50
Alignment explanation
Indices: 50238622--50238900 Score: 328
Period size: 50 Copynumber: 5.5 Consensus size: 50
50238612 TTGGTACGCA
* *
50238622 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCTATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACATG
*
50238672 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACATG
** **
50238722 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTATC-G-GGCATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACTATCTGATACATG
* * * * *
50238771 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 --TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACATG
* * * * **
50238823 TAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACTGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACTATCTGATACATG
*
50238875 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
50238901 GGTGTTTTCA
Statistics
Matches: 195, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
49 4 0.02
50 117 0.60
51 37 0.19
52 37 0.19
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACATG
Found at i:50238796 original size:101 final size:99
Alignment explanation
Indices: 50238622--50238900 Score: 335
Period size: 101 Copynumber: 2.8 Consensus size: 99
50238612 TTGGTACGCA
* * * *
50238622 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCTATCTGATACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAAACTATCGGATACA-GTAGTAGCCTGCACTT
* *
50238687 AGTACTACACACGTGACCTAACAATCTGATACATG
65 AGTACTACACACGCGACCTAACAATCTGATACACG
* *
50238722 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGCATGCA-TAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAAACTATC-GG-ATACAGTAGTAGCCTGCAC
* *
50238786 TTAGTACTACACATGCGACCTAACAATCTGGTACACG
63 TTAGTACTACACACGCGACCTAACAATCTGATACACG
* * ** * *
50238823 TAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACTGTCTTAAACACATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC--AAACTATCGGATACA-GTAGTAGCCTGCAC
*
50238888 ATAGTACTACACA
63 TTAGTACTACACA
50238901 GGTGTTTTCA
Statistics
Matches: 154, Mismatches: 18, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
100 34 0.22
101 83 0.54
102 33 0.21
103 4 0.03
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAAACTATCGGATACAGTAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACAATCTGATACACG
Found at i:50249362 original size:34 final size:34
Alignment explanation
Indices: 50249319--50249383 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
50249309 GAGACTTCGT
*
50249319 CACACTATCCTACTATCACTTTTGTACTTTTTAG
1 CACACTATCCTACTATCACTTTGGTACTTTTTAG
*
50249353 CACACTATCCTCCTATCACTTTGGTACTTTT
1 CACACTATCCTACTATCACTTTGGTACTTTT
50249384 GAGATTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.22, C:0.29, G:0.06, T:0.43
Consensus pattern (34 bp):
CACACTATCCTACTATCACTTTGGTACTTTTTAG
Found at i:50251735 original size:16 final size:16
Alignment explanation
Indices: 50251714--50251758 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
50251704 CAAAAGTATA
50251714 AAGAGAAAAGAAAAAG
1 AAGAGAAAAGAAAAAG
*
50251730 AAGAG-AAA-TAAAAG
1 AAGAGAAAAGAAAAAG
*
50251744 AAAAGAAAAGAAAAA
1 AAGAGAAAAGAAAAA
50251759 ATAAAATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 9 0.38
15 6 0.25
16 9 0.38
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (16 bp):
AAGAGAAAAGAAAAAG
Found at i:50251749 original size:19 final size:20
Alignment explanation
Indices: 50251719--50251756 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
50251709 GTATAAAGAG
*
50251719 AAAAGAAAAAGAAGAGAAAT
1 AAAAGAAAAAGAAAAGAAAT
50251739 AAAAG-AAAAGAAAAGAAA
1 AAAAGAAAAAGAAAAGAAA
50251757 AAATAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (20 bp):
AAAAGAAAAAGAAAAGAAAT
Found at i:50252158 original size:22 final size:22
Alignment explanation
Indices: 50252133--50252174 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
50252123 CTTGCGTGAG
*
50252133 AGAATGGAGGA-GAAGGAAAGGA
1 AGAA-GGAGGAGGAAGAAAAGGA
50252155 AGAAGGAGGAGGAAGAAAAG
1 AGAAGGAGGAGGAAGAAAAG
50252175 AGATTAGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.52, C:0.00, G:0.45, T:0.02
Consensus pattern (22 bp):
AGAAGGAGGAGGAAGAAAAGGA
Found at i:50262357 original size:4 final size:5
Alignment explanation
Indices: 50262349--50262388 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
50262339 AGAGAAAGAA
*
50262349 AAAAT AAATT AATAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AA--AAT AAAAT AAAAT AAAAT AAAAT AAA
50262389 CTTGCAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 27 0.87
7 4 0.13
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:50262372 original size:5 final size:5
Alignment explanation
Indices: 50262362--50262388 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
50262352 ATAAATTAAT
50262362 AAATA AAATA AAATA AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AA
50262389 CTTGCAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:50264311 original size:11 final size:11
Alignment explanation
Indices: 50264290--50264319 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
50264280 CGAGCATATT
50264290 ATACAATTAAAC
1 ATAC-ATTAAAC
50264302 ATACATTAAAC
1 ATACATTAAAC
50264313 ATACATT
1 ATACATT
50264320 TTCAAATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (11 bp):
ATACATTAAAC
Found at i:50265706 original size:24 final size:24
Alignment explanation
Indices: 50265672--50265717 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
50265662 ATTCATGCCA
50265672 CAAAATATACCAATTCATCATCAT
1 CAAAATATACCAATTCATCATCAT
*
50265696 CAAAATGTACCAATTCATCATC
1 CAAAATATACCAATTCATCATC
50265718 CCTATACCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.28
Consensus pattern (24 bp):
CAAAATATACCAATTCATCATCAT
Found at i:50274816 original size:12 final size:12
Alignment explanation
Indices: 50274799--50274838 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
50274789 TCAGTTGAGG
50274799 GATTTGAGGAGA
1 GATTTGAGGAGA
*
50274811 GATTTGAGGAGG
1 GATTTGAGGAGA
*
50274823 GATTTTAGGAGA
1 GATTTGAGGAGA
50274835 GATT
1 GATT
50274839 AGGGGAGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.40, T:0.30
Consensus pattern (12 bp):
GATTTGAGGAGA
Found at i:50274845 original size:24 final size:24
Alignment explanation
Indices: 50274795--50274846 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
50274785 GTGATCAGTT
*
50274795 GAGGGATTTGAGGAGAGATTTGAG
1 GAGGGATTTGAGGAGAGATTAGAG
* *
50274819 GAGGGATTTTAGGAGAGATTAGGG
1 GAGGGATTTGAGGAGAGATTAGAG
50274843 GAGG
1 GAGG
50274847 AAAAAGTGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (24 bp):
GAGGGATTTGAGGAGAGATTAGAG
Found at i:50276275 original size:27 final size:27
Alignment explanation
Indices: 50276245--50276376 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
50276235 TAATTTGATG
* *
50276245 AAATGACTATTTTACCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* * *
50276272 AAATGACTGTTTTGTCCGTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* *
50276299 GAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* * * *
50276326 AAATGACTATATTGCCCTTATATGCTC
1 AAATGACTGTTTTGCCCTTATATGGTA
*
50276353 AAATGACTGTTTTGCCCCTATATG
1 AAATGACTGTTTTGCCCTTATATG
50276377 ATGTATGTTT
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATATGGTA
Found at i:50276674 original size:23 final size:24
Alignment explanation
Indices: 50276643--50276687 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
50276633 ATATCCCCAC
*
50276643 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
*
50276666 ATGGTGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
50276688 GTAGGACTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.20, C:0.02, G:0.51, T:0.27
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:50285776 original size:24 final size:23
Alignment explanation
Indices: 50285657--50285775 Score: 102
Period size: 22 Copynumber: 5.2 Consensus size: 23
50285647 AGGCTATAAT
* * *
50285657 GAGCTAAAACGGTAAGCTC-TGTC
1 GAGCTAGAACAGTAAGCTCAT-AC
*
50285680 GAGCT-GAACAGTAAGCTC-TATT
1 GAGCTAGAACAGTAAGCTCATA-C
* *
50285702 GAGCT-GAACAATTAGCTCATAC
1 GAGCTAGAACAGTAAGCTCATAC
* * *
50285724 GAGCTAAAACGGTAAGCTCAAAC
1 GAGCTAGAACAGTAAGCTCATAC
50285747 GAGCTGAGAACAGTAAGCTCATAC
1 GAGCT-AGAACAGTAAGCTCATAC
50285771 GAGCT
1 GAGCT
50285776 GTGGTGAGTC
Statistics
Matches: 77, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
22 33 0.43
23 24 0.31
24 20 0.26
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (23 bp):
GAGCTAGAACAGTAAGCTCATAC
Found at i:50296055 original size:17 final size:18
Alignment explanation
Indices: 50296033--50296068 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
50296023 TTACACAACC
50296033 TGAAGACAC-GGGCGTGT
1 TGAAGACACAGGGCGTGT
50296050 TGAAGACACATGGGCGTGT
1 TGAAGACACA-GGGCGTGT
50296069 CCCTGTGTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
19 8 0.47
ACGTcount: A:0.25, C:0.17, G:0.39, T:0.19
Consensus pattern (18 bp):
TGAAGACACAGGGCGTGT
Found at i:50298574 original size:40 final size:40
Alignment explanation
Indices: 50298519--50298721 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 40
50298509 TGAATGATAC
* * * *
50298519 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
*
50298559 CCGGGCTAAGACCCGAAGGC-ATTCGT-CGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGATTATAT
* ** *
50298598 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* * ** *
50298638 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* ** *
50298678 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
50298718 CCGG
1 CCGG
50298722 TTGAATCCCG
Statistics
Matches: 141, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 34 0.24
40 107 0.76
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
Found at i:50298650 original size:79 final size:80
Alignment explanation
Indices: 50298519--50298705 Score: 216
Period size: 79 Copynumber: 2.4 Consensus size: 80
50298509 TGAATGATAC
* * * * ** *
50298519 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
* *** *
50298583 GT-CGAGTTGTTATAT
65 GTGCAAGTTACCAAAT
* *
50298598 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
50298663 TGCAAGTTACCAAAT
66 TGCAAGTTACCAAAT
*
50298678 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCAATTGTGC
50298706 TTGTGGTTAT
Statistics
Matches: 91, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 53 0.58
80 38 0.42
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCAAGTTACCAAAT
Found at i:50306593 original size:40 final size:40
Alignment explanation
Indices: 50306538--50306741 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 40
50306528 TGAATGATAC
* * * *
50306538 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
50306578 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGATTATAT
* ** *
50306618 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* * * * ** *
50306658 CCGGGTTAAGATCCGAAGTCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
* ** *
50306698 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
50306738 CCGG
1 CCGG
50306742 TTGAATCTCG
Statistics
Matches: 140, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.02
40 132 0.94
41 5 0.04
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATAT
Found at i:50306740 original size:80 final size:80
Alignment explanation
Indices: 50306538--50306741 Score: 230
Period size: 80 Copynumber: 2.5 Consensus size: 80
50306528 TGAATGATAC
* * *
50306538 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
*** *
50306603 TGCAAGTTGTTATAT
66 TGCAAGTTACCAAAT
* * ** * * * *
50306618 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCCGGGTTAAGATCCGAAGTCAATT-
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
50306682 GTGCAAGTTACCAAAT
65 GTGCAAGTTACCAAAT
* * *
50306698 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGG
50306742 TTGAATCTCG
Statistics
Matches: 100, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 97 0.97
81 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:50309186 original size:84 final size:84
Alignment explanation
Indices: 50309041--50309194 Score: 209
Period size: 84 Copynumber: 1.8 Consensus size: 84
50309031 AAGTCGTACA
* * * * * * *
50309041 ATGCCATATCCCATATATGGTCGTACATGTAATCTCATATCGATGCAATAGCCTAGCTATGGTCT
1 ATGCCATATCCCAGACATGGTCGTACACGTAATATCATACCGATGCAATAGCCAAGATATGGTCT
50309106 TACACAAAATTTTGTATCG
66 TACACAAAATTTTGTATCG
* * * *
50309125 ATGCCATGTCCCAGACATGGTCTTACACGTAATATCATACCGATGCCATATCCAAGATATGGTCT
1 ATGCCATATCCCAGACATGGTCGTACACGTAATATCATACCGATGCAATAGCCAAGATATGGTCT
50309190 TACAC
66 TACAC
50309195 GTATTCTCAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
84 59 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (84 bp):
ATGCCATATCCCAGACATGGTCGTACACGTAATATCATACCGATGCAATAGCCAAGATATGGTCT
TACACAAAATTTTGTATCG
Found at i:50309195 original size:42 final size:42
Alignment explanation
Indices: 50309041--50309197 Score: 161
Period size: 42 Copynumber: 3.7 Consensus size: 42
50309031 AAGTCGTACA
* * * *
50309041 ATGCCATATCCCATATATGGTCGTACATGTAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
* * * * ** * **
50309083 ATGCAATAGCCTAGCTATGGTCTTACACAAAATTTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
* * *
50309125 ATGCCATGTCCCAGACATGGTCTTACACGTAATATCATACCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
*
50309167 ATGCCATATCCAAGATATGGTCTTACACGTA
1 ATGCCATATCCCAGATATGGTCTTACACGTA
50309198 TTCTCATCTC
Statistics
Matches: 88, Mismatches: 27, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
Found at i:50312939 original size:51 final size:48
Alignment explanation
Indices: 50312884--50313026 Score: 118
Period size: 51 Copynumber: 3.0 Consensus size: 48
50312874 CTACCACATA
*
50312884 ACATGTAACACATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG
1 ACATGTAA-GCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG
* ** * * *
50312933 TTACATG-AATTGCATCTACCATAAACTCAGACTTCTCAACGAGCTCGGATG
1 --ACATGTAA--GCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG
* *
50312984 -C-T-T--GCATCCATAATGAACTCGAACCTCTCAACGAGCTCAGATG
1 ACATGTAAGCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG
50313027 CCACATATCT
Statistics
Matches: 74, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
43 32 0.43
47 1 0.01
48 1 0.01
50 2 0.03
51 38 0.51
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (48 bp):
ACATGTAAGCATCCATAATGAACTCGGACCTCTCAACGAGCTCGGATG
Found at i:50315011 original size:24 final size:24
Alignment explanation
Indices: 50314959--50315148 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
50314949 GCTTTATCAT
*
50314959 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
50314984 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
50315008 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
50315031 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
50315055 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
50315079 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
50315103 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50315126 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
50315149 TCACTTCCTC
Statistics
Matches: 153, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.28
24 98 0.64
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:50315035 original size:47 final size:48
Alignment explanation
Indices: 50314958--50315149 Score: 291
Period size: 47 Copynumber: 4.0 Consensus size: 48
50314948 TGCTTTATCA
* *
50314958 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
50315007 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
50315054 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
50315102 GATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
50315149 T
1 T
50315150 CACTTCCTCC
Statistics
Matches: 133, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
47 70 0.53
48 50 0.38
49 13 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:50315076 original size:71 final size:72
Alignment explanation
Indices: 50314959--50315149 Score: 289
Period size: 71 Copynumber: 2.7 Consensus size: 72
50314949 GCTTTATCAT
* *
50314959 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
50315023 GCCC-TTTA
64 GCCCTTTTA
* * *
50315031 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
50315096 CCTTTTG
66 CCTTTTA
50315103 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
50315150 CACTTCCTCC
Statistics
Matches: 109, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
71 76 0.70
72 33 0.30
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTTA
Found at i:50315219 original size:9 final size:9
Alignment explanation
Indices: 50315205--50315261 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
50315195 ATCTCGTGTG
50315205 CATATCATA
1 CATATCATA
*
50315214 CATATCATGTG
1 CATATCA--TA
50315225 CATATCATA
1 CATATCATA
* *
50315234 CATGTCATGTG
1 CATATCA--TA
50315245 CATATCATA
1 CATATCATA
50315254 CATATCAT
1 CATATCAT
50315262 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:50315224 original size:20 final size:20
Alignment explanation
Indices: 50315201--50315263 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
50315191 GAACATCTCG
50315201 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
50315221 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
50315241 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
50315261 TGT
1 TGT
50315264 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:50315346 original size:25 final size:25
Alignment explanation
Indices: 50315300--50315347 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
50315290 ATATATAAAC
* * * *
50315300 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
50315325 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
50315348 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:50316533 original size:27 final size:26
Alignment explanation
Indices: 50316503--50316580 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
50316493 AGGCATATTC
50316503 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
*
50316530 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAGGGG-TATTACG
* *
50316557 GTCTTTTTACCTAATAGGGGTATT
1 GTCATTTTACCT-ACAGGGGTATT
50316581 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 4 0.09
27 36 0.84
28 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:50316657 original size:27 final size:26
Alignment explanation
Indices: 50316636--50316977 Score: 230
Period size: 27 Copynumber: 12.7 Consensus size: 26
50316626 AAGGGTATTT
*
50316636 CAGTAATTTTATAAATCGAGGGTAAAA
1 CAGTAATTCTATAAATCGAGGGT-AAA
* * *
50316663 CAGTAATTCTGTAAATCAAGAGTGAAA
1 CAGTAATTCTATAAATCGAGGGT-AAA
50316690 CAGTAATTCTATAAATCGAGGGTAAA
1 CAGTAATTCTATAAATCGAGGGTAAA
* *
50316716 -ATGGCAATTCTGTAAATCGAGGGTAAAA
1 CA--GTAATTCTATAAATCGAGGGT-AAA
* * *
50316744 CGGTAATTCTGTAAATAGAGGGTAAA
1 CAGTAATTCTATAAATCGAGGGTAAA
* * *
50316770 -ACGATAATTATGTAAATCGGGGGTAAA
1 CA-G-TAATTCTATAAATCGAGGGTAAA
* * * *
50316797 -ACGATAATTATGTAAATTGGGGGTAAAA
1 CA-G-TAATTCTATAAATCGAGGGT-AAA
* *
50316825 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTATAAATCGAGGGT-AAA
* *
50316852 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTATAAATCGAGGGT-AAA
* *
50316879 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 CAGTAATTCTATAAATC-GAGGGT-AAA
* *
50316906 CGGTAATTCTGTAAATCGAGGGTAAA
1 CAGTAATTCTATAAATCGAGGGTAAA
*
50316932 -ACGATAATTCTAT-AACCTGAGGGTAAA
1 CA-G-TAATTCTATAAATC-GAGGGTAAA
*
50316959 -ACGATAATTCTGTAAATCG
1 CA-G-TAATTCTATAAATCG
50316978 GGAGTACTTT
Statistics
Matches: 270, Mismatches: 31, Indels: 28
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.00
26 15 0.06
27 243 0.90
28 11 0.04
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (26 bp):
CAGTAATTCTATAAATCGAGGGTAAA
Found at i:50316994 original size:81 final size:81
Alignment explanation
Indices: 50316647--50316977 Score: 436
Period size: 81 Copynumber: 4.1 Consensus size: 81
50316637 AGTAATTTTA
* * * *
50316647 TAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGAGTGAAAC-AGTAATTCTATAAATCGAGG
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTATAAATCGAGG
* **
50316711 GTAAAATGGCAATTCTG
65 GTAAAACGATAATTCTG
* * * *
50316728 TAAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAACGATAATTATGTAAATCGGGGG
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGG
*
50316793 TAAAACGATAATTATG
66 TAAAACGATAATTCTG
* * * *
50316809 TAAATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGG
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGG
*
50316874 TAAAA-TAGTAATTCTG
66 TAAAACGA-TAATTCTG
*
50316890 TAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTAT-AACCTGAG
1 TAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATC-GAG
50316953 GGTAAAACGATAATTCTG
64 GGTAAAACGATAATTCTG
50316971 TAAATCG
1 TAAATCG
50316978 GGAGTACTTT
Statistics
Matches: 218, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
80 4 0.02
81 211 0.97
82 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (81 bp):
TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGG
TAAAACGATAATTCTG
Found at i:50317008 original size:54 final size:54
Alignment explanation
Indices: 50316647--50316977 Score: 416
Period size: 54 Copynumber: 6.1 Consensus size: 54
50316637 AGTAATTTTA
* * * * *
50316647 TAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGAGTGAAAC-AGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTG
* * *
50316701 TAAATCGAGGGTAAAATGGCAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTG
* * * * *
50316755 TAAATAGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAACGATAATTATG
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTG
* * *
50316809 TAAATTGGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTG
** *
50316863 TAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGATAATTCTG
* * *
50316917 TAAATCGAGGGTAAAACGATAATTCTAT-AACCTGAGGGTAAAACGATAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGATAATTCTG
50316971 TAAATCG
1 TAAATCG
50316978 GGAGTACTTT
Statistics
Matches: 242, Mismatches: 32, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
53 3 0.01
54 239 0.99
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTG
Found at i:50319514 original size:40 final size:40
Alignment explanation
Indices: 50319432--50319598 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
50319422 AAATTGAATG
* * ** ***
50319432 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGTT
* *
50319471 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGTT
* * **
50319511 ATATCCGGGCTAAGACCTGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGGTT
* *
50319551 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-TGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-AGTGGTT
50319591 ATATCCGG
1 ATATCCGG
50319599 TTATATTCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
39 16 0.16
40 83 0.81
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGTT
Found at i:50323892 original size:38 final size:39
Alignment explanation
Indices: 50323744--50323920 Score: 232
Period size: 39 Copynumber: 4.5 Consensus size: 39
50323734 TCGTTCAAAC
* * ** * *
50323744 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAA-A
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
50323783 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
50323823 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
50323862 GCCTTCGGGCTTAGCCC-GATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
50323900 GCCTTCGGGCTTAGCCCGGAT
1 GCCTTCGGGCTTAGCCCGGAT
50323921 CACAGCACAA
Statistics
Matches: 122, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
38 38 0.31
39 75 0.61
40 9 0.07
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:50323902 original size:77 final size:78
Alignment explanation
Indices: 50323744--50323920 Score: 232
Period size: 77 Copynumber: 2.3 Consensus size: 78
50323734 TCGTTCAAAC
* * **
50323744 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGCCTTCGGGACTTAACCCGGATATCA
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGCCTTCGGGACTTAACCCGGATATCA
* *
50323809 CAATTTGCACAATT
65 CAACTCGCACAATT
* * *
50323823 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCC-GATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAA-AGCCTTCGGGACTTAACCCGGATATCA
*
50323886 TAACTCGCACAATT
65 CAACTCGCACAATT
50323900 GCCTTCGGGCTTAGCCCGGAT
1 GCCTTCGGGCTTAGCCCGGAT
50323921 CACAGCACAA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
77 39 0.45
78 30 0.34
79 18 0.21
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (78 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGCCTTCGGGACTTAACCCGGATATCAC
AACTCGCACAATT
Found at i:50331729 original size:39 final size:39
Alignment explanation
Indices: 50331651--50331794 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
50331641 CCGCACAAAG
*
50331651 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * * *
50331691 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
50331730 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
50331769 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
50331795 TCGAACATTC
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:50347217 original size:40 final size:40
Alignment explanation
Indices: 50347109--50347276 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 40
50347099 CGGGATTTAA
* * * * * *
50347109 CCGGATACAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCAGAAATGCCTTCGGGTCTTAGC
* ** * * ** *
50347149 CCGGATTTGGTAACTTGCACCATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCAGAAATGCCTTCGGGTCTTAGC
*
50347189 CCGGATATAA-CAACTCGCACGAAA-GCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCA-GAAATGCCTTCGGGTCTTAGC
* * *
50347229 CCGGACATAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAATCACTAGCAGAAATGCCTTCGGGTCTTAGC
50347269 CCGGATAT
1 CCGGATAT
50347277 CATTCAAATG
Statistics
Matches: 101, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.03
40 96 0.95
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAATCACTAGCAGAAATGCCTTCGGGTCTTAGC
Found at i:50348949 original size:22 final size:22
Alignment explanation
Indices: 50348924--50348966 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
50348914 ATTTTGGGCT
*
50348924 GTCACATTTAGTCTAT-TTATTA
1 GTCACA-TTAGTCAATGTTATTA
50348946 GTCACATTAGTCAATGTTATT
1 GTCACATTAGTCAATGTTATT
50348967 CAAAAATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.47
Consensus pattern (22 bp):
GTCACATTAGTCAATGTTATTA
Found at i:50353564 original size:45 final size:39
Alignment explanation
Indices: 50353481--50353558 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
50353471 AATTAACAGC
50353481 CTTGAAAAAGTAAGAGAGAAGTTTCATACTTATCCTTAT
1 CTTGAAAAAGTAAGAGAGAAGTTTCATACTTATCCTTAT
50353520 CTTGAAAAAGTAAGAGAGAAGTTTCATACTTATCCTTAT
1 CTTGAAAAAGTAAGAGAGAAGTTTCATACTTATCCTTAT
50353559 ACTTATATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (39 bp):
CTTGAAAAAGTAAGAGAGAAGTTTCATACTTATCCTTAT
Found at i:50360040 original size:28 final size:29
Alignment explanation
Indices: 50360008--50360122 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
50359998 TACCTGTATC
* * *
50360008 TGGCCTATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
50360036 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
50360065 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
50360094 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
50360122 T
1 T
50360123 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 26 0.34
29 49 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:50360105 original size:58 final size:57
Alignment explanation
Indices: 50359999--50360109 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
50359989 AATTTCACAT
* * *
50359999 ACCTGTATCTGGCCTATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
50360056 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
50360110 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:50362633 original size:22 final size:23
Alignment explanation
Indices: 50362575--50362624 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
50362565 GATCAATAGT
*
50362575 AGCTCT-ACTAAGCTAAAACGGTA
1 AGCTCTGAC-AAGCTAAAACAGTA
50362598 AGCTCTGACAAGCT-AAACAGTA
1 AGCTCTGACAAGCTAAAACAGTA
50362620 AGCTC
1 AGCTC
50362625 ATACGAGCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 12 0.48
23 11 0.44
24 2 0.08
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (23 bp):
AGCTCTGACAAGCTAAAACAGTA
Found at i:50362646 original size:24 final size:26
Alignment explanation
Indices: 50362616--50362684 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 26
50362606 CAAGCTAAAC
*
50362616 AGTAAGCTCATACGAGCTGAGA-A-T
1 AGTAAGCTCATACAAGCTGAGATATT
* * *
50362640 AGTAAGCTCTTACAAACTGATATATT
1 AGTAAGCTCATACAAGCTGAGATATT
*
50362666 GGTAAGCTCATACAAGCTG
1 AGTAAGCTCATACAAGCTG
50362685 CGGTGACTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 18 0.50
25 1 0.03
26 17 0.47
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (26 bp):
AGTAAGCTCATACAAGCTGAGATATT
Found at i:50382859 original size:46 final size:46
Alignment explanation
Indices: 50382809--50382984 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
50382799 TGGTTGAGCA
50382809 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
50382855 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAAAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
50382902 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
50382948 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50382985 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50382965 original size:93 final size:93
Alignment explanation
Indices: 50382806--50382976 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
50382796 GGATGGTTGA
*
50382806 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
50382871 TGAGTCCGAGTTCGAAAGATGTAACTAG
66 TGAGTCCGAGTTCGAAAGATGTAACTAG
* * *
50382899 GCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
50382964 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50382977 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAAAGATGTAACTAG
Found at i:50384400 original size:68 final size:70
Alignment explanation
Indices: 50384328--50384525 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
50384318 ACACCCTGTA
* * * *
50384328 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
50384390 ATAAAT
65 ATAAAT
*
50384396 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
50384461 ATAAAT
65 ATAAAT
*
50384467 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
50384526 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:50384439 original size:41 final size:41
Alignment explanation
Indices: 50384394--50384511 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
50384384 TGAAAGATAA
50384394 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
50384435 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50384465 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50384506 ATGTAG
1 ATGTAG
50384512 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:50384451 original size:71 final size:71
Alignment explanation
Indices: 50384362--50384525 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50384352 GAGATGTATC
50384362 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50384427 AGGACA
66 AGGACA
50384433 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50384498 AGGACA
66 AGGACA
50384504 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50384526 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50391966 original size:68 final size:70
Alignment explanation
Indices: 50391894--50392091 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
50391884 ACACCCTGTA
* * * *
50391894 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
50391956 ATAAAT
65 ATAAAT
*
50391962 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
50392027 ATAAAT
65 ATAAAT
*
50392033 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
50392092 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:50392005 original size:41 final size:41
Alignment explanation
Indices: 50391960--50392077 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
50391950 TGAAAGATAA
50391960 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
50392001 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50392031 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50392072 ATGTAG
1 ATGTAG
50392078 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:50392017 original size:71 final size:71
Alignment explanation
Indices: 50391928--50392091 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50391918 GAGATGTATC
50391928 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50391993 AGGACA
66 AGGACA
50391999 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50392064 AGGACA
66 AGGACA
50392070 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50392092 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50397366 original size:37 final size:37
Alignment explanation
Indices: 50397316--50397389 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
50397306 TTTTGCTTAG
50397316 TTTATTTTATAAATTTAGCTTTTAAACCTTAATATAA
1 TTTATTTTATAAATTTAGCTTTTAAACCTTAATATAA
50397353 TTTATTTTATAAATTTAGCTTTTAAACCTTAATATAA
1 TTTATTTTATAAATTTAGCTTTTAAACCTTAATATAA
50397390 AACCTTTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (37 bp):
TTTATTTTATAAATTTAGCTTTTAAACCTTAATATAA
Found at i:50399426 original size:23 final size:23
Alignment explanation
Indices: 50399400--50399453 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
50399390 AGCGTAGCGG
*
50399400 CTAATAGTAACGTAGCAAAGCTA
1 CTAATAGTAACGCAGCAAAGCTA
*
50399423 CTAATAGTAACGCAGCAAAGCTG
1 CTAATAGTAACGCAGCAAAGCTA
50399446 CTAATAGT
1 CTAATAGT
50399454 GGTAAACGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (23 bp):
CTAATAGTAACGCAGCAAAGCTA
Found at i:50401128 original size:29 final size:27
Alignment explanation
Indices: 50401094--50401196 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
50401084 TACTCAATCA
*
50401094 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * * *
50401123 CGCACACATAGTACCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
50401152 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
50401181 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
50401197 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:50405809 original size:21 final size:21
Alignment explanation
Indices: 50405778--50405864 Score: 77
Period size: 21 Copynumber: 4.2 Consensus size: 21
50405768 GGTTAACTCA
*
50405778 TATGAGTTTCCGTTCAACCCT
1 TATGGGTTTCCGTTCAACCCT
* * *
50405799 AATGGGTTTCCGTTC-AGCTT
1 TATGGGTTTCCGTTCAACCCT
* * *
50405819 TATGAGCTTCCATTCAACCCT
1 TATGGGTTTCCGTTCAACCCT
* * *
50405840 TATGGGTTTCTGTTCAGCACT
1 TATGGGTTTCCGTTCAACCCT
50405861 TATG
1 TATG
50405865 TGCTTCTGTT
Statistics
Matches: 49, Mismatches: 16, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
20 14 0.29
21 35 0.71
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (21 bp):
TATGGGTTTCCGTTCAACCCT
Found at i:50405835 original size:41 final size:41
Alignment explanation
Indices: 50405778--50405857 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
50405768 GGTTAACTCA
* *
50405778 TATGAGTTTCCGTTCAACCCTAATGGGTTTCCGTTCAGCTT
1 TATGAGCTTCCATTCAACCCTAATGGGTTTCCGTTCAGCTT
* *
50405819 TATGAGCTTCCATTCAACCCTTATGGGTTTCTGTTCAGC
1 TATGAGCTTCCATTCAACCCTAATGGGTTTCCGTTCAGC
50405858 ACTTATGTGC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.39
Consensus pattern (41 bp):
TATGAGCTTCCATTCAACCCTAATGGGTTTCCGTTCAGCTT
Found at i:50415409 original size:37 final size:37
Alignment explanation
Indices: 50415354--50415456 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
50415344 CGAATAGTCC
* * * *
50415354 CCACTCGTAGTTAGCGGGTCTCACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
50415391 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50415428 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50415457 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50415656 original size:48 final size:48
Alignment explanation
Indices: 50415604--50415885 Score: 487
Period size: 48 Copynumber: 5.9 Consensus size: 48
50415594 CACATCTCCA
*
50415604 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
50415652 ACATATTTCACACTAGCCATT-GGCTGTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
50415699 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
50415747 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
* * *
50415795 ATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATATATCTCAT
1 ACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACATATCTCAT
*
50415843 ACATATTTCACACTAGCCATTCGGCTTTACCACATATATATAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
50415886 ATATTTGTCT
Statistics
Matches: 223, Mismatches: 8, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
47 47 0.21
48 175 0.78
49 1 0.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (48 bp):
ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:50419575 original size:40 final size:40
Alignment explanation
Indices: 50419528--50419813 Score: 430
Period size: 40 Copynumber: 7.2 Consensus size: 40
50419518 TCGAATACAC
* * * * *
50419528 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCAGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
50419568 AACACCAGCACGAATGCTCTTCGGGACTTAACCCTGG-TAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCC-GGATAT
* * * * *
50419608 AACTCTAGCACAAATGCTCTTCGAGACTTAGCCCGGGTAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
50419648 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
50419688 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
50419728 ATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
50419768 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
50419808 ATCACT
1 ATCACT
50419814 CTCAATTCTC
Statistics
Matches: 226, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 223 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:50421148 original size:37 final size:37
Alignment explanation
Indices: 50421093--50421195 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
50421083 CGAATAGTCC
* * * *
50421093 CCACTCGTAGTTAGCGGGTCTCACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
50421130 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50421167 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50421196 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50421394 original size:48 final size:48
Alignment explanation
Indices: 50421336--50421578 Score: 382
Period size: 48 Copynumber: 5.0 Consensus size: 48
50421326 ATATACACAC
* * *
50421336 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
50421384 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
50421432 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA-AT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
50421479 ATCTCAAATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACAC-TAGCCATTCGGCTTTACCAC--ATATACAT
50421529 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
50421577 AT
1 AT
50421579 ATTTGTCTTG
Statistics
Matches: 180, Mismatches: 10, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
46 1 0.01
47 37 0.21
48 99 0.55
49 5 0.03
50 37 0.21
51 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:50421562 original size:97 final size:96
Alignment explanation
Indices: 50421336--50421578 Score: 382
Period size: 97 Copynumber: 2.5 Consensus size: 96
50421326 ATATACACAC
* * * *
50421336 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAAACATATTTCA
*
50421401 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATACGGCTTTACCACATATACAT
*
50421432 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA-ATATCTCAAATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAAACATATTTCA
*
50421496 C-CTTAGCCATACGGCTTTACCACATATATATAT
66 CAC-TAGCCATACGGCTTTACCAC--ATATACAT
50421529 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
50421579 ATTTGTCTTG
Statistics
Matches: 136, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
94 1 0.01
95 37 0.27
96 42 0.31
97 52 0.38
98 4 0.03
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (96 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAAACATATTTCA
CACTAGCCATACGGCTTTACCACATATACAT
Found at i:50428061 original size:21 final size:21
Alignment explanation
Indices: 50428026--50428098 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
50428016 ATTTAACTCA
* *
50428026 TATGAGTTTCTGTTCAACCCT
1 TATGGGTTTCAGTTCAACCCT
* * * *
50428047 AATGGGTTTCCGTTCAGCGCT
1 TATGGGTTTCAGTTCAACCCT
* * *
50428068 TATGAGCTTCAGCTCAACCCT
1 TATGGGTTTCAGTTCAACCCT
50428089 TATGGGTTTC
1 TATGGGTTTC
50428099 TGTTTAGCAC
Statistics
Matches: 38, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.37
Consensus pattern (21 bp):
TATGGGTTTCAGTTCAACCCT
Found at i:50428085 original size:42 final size:42
Alignment explanation
Indices: 50428039--50428119 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
50428029 GAGTTTCTGT
*
50428039 TCAACCCTAATGGGTTTCCGTTCAGCGCTTATGAGCTTCAGC
1 TCAACCCTAATGGGTTTCCGTTCAGCACTTATGAGCTTCAGC
* * * *
50428081 TCAACCCTTATGGGTTTCTGTTTAGCACTTATGTGCTTC
1 TCAACCCTAATGGGTTTCCGTTCAGCACTTATGAGCTTC
50428120 TGTTTAGCCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.37
Consensus pattern (42 bp):
TCAACCCTAATGGGTTTCCGTTCAGCACTTATGAGCTTCAGC
Found at i:50428140 original size:19 final size:21
Alignment explanation
Indices: 50428087--50428127 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50428077 CAGCTCAACC
* *
50428087 CTTATGGGTTTCTGTTTAGCA
1 CTTATGTGCTTCTGTTTAGCA
50428108 CTTATGTGCTTCTGTTTAGC
1 CTTATGTGCTTCTGTTTAGC
50428128 CTTCAGGCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.17, G:0.22, T:0.49
Consensus pattern (21 bp):
CTTATGTGCTTCTGTTTAGCA
Found at i:50433859 original size:8 final size:8
Alignment explanation
Indices: 50433846--50433882 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
50433836 TTATGTTTAG
50433846 TATATTAT
1 TATATTAT
50433854 TATATTAT
1 TATATTAT
50433862 TATATTAT
1 TATATTAT
50433870 TATATTAT
1 TATATTAT
50433878 TATAT
1 TATAT
50433883 AATAAAGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:50433915 original size:5 final size:5
Alignment explanation
Indices: 50433905--50433946 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
50433895 TTATGTTTTA
50433905 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
50433947 ATAACTAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:50435235 original size:15 final size:15
Alignment explanation
Indices: 50435215--50435271 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
50435205 CGATGAATTT
50435215 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
50435230 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
50435245 ATTGAATTTATATTG
1 ATTGAATTTATATTG
50435260 ATTGAA-TTATAT
1 ATTGAATTTATAT
50435272 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:50435681 original size:23 final size:23
Alignment explanation
Indices: 50435655--50435715 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 23
50435645 AGGCACTTTA
50435655 TGTGTCGTATTTTAGGCACCTCG
1 TGTGTCGTATTTTAGGCACCTCG
* *
50435678 TGTGTCGTA--TCAGACACCTCG
1 TGTGTCGTATTTTAGGCACCTCG
50435699 TGTGTCG--TTTTAGGCAC
1 TGTGTCGTATTTTAGGCAC
50435716 TTTATGTGTC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 23 0.72
23 9 0.28
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (23 bp):
TGTGTCGTATTTTAGGCACCTCG
Found at i:50435723 original size:21 final size:21
Alignment explanation
Indices: 50435645--50435727 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
50435635 TTTATCGATC
* *
50435645 AGGCACTTTATGTGTCGTATTTT
1 AGGCACCTCATGTGTCG--TTTT
* * *
50435668 AGGCACCTCGTGTGTCGTATC
1 AGGCACCTCATGTGTCGTTTT
* *
50435689 AGACACCTCGTGTGTCGTTTT
1 AGGCACCTCATGTGTCGTTTT
* *
50435710 AGGCACTTTATGTGTCGT
1 AGGCACCTCATGTGTCGT
50435728 ACTCTGATCA
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
21 34 0.71
23 14 0.29
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.39
Consensus pattern (21 bp):
AGGCACCTCATGTGTCGTTTT
Found at i:50439866 original size:90 final size:91
Alignment explanation
Indices: 50439694--50439918 Score: 276
Period size: 93 Copynumber: 2.4 Consensus size: 91
50439684 CACTGCTGCT
* * *
50439694 ATGTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAATGCTAGTGTAAGA
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATG--ATGCTAGTGTAAGA
*
50439759 CATGTCTGGGACATGCATCGGC-CTTGAG
64 CATGTCTGGGACATGCATCGGCAC-GGAG
* * * * *
50439787 ATGTAAGCCAGTGTAAGACATGTTTGGGACATGCATTAGCTACGTGATG-TGCTAGTGTAAGATA
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGATGCTAGTGTAAGACA
*
50439851 TGTCTGGGACATGCATCGGCACGGAT
66 TGTCTGGGACATGCATCGGCACGGAG
*
50439877 ATAAG-AGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGC
1 AT--GTA-AGCCAGTGTAAGACATGTCTGGGACATGCATCAGC
50439919 ACGGATATAT
Statistics
Matches: 115, Mismatches: 13, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
90 38 0.33
91 2 0.02
92 33 0.29
93 42 0.37
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (91 bp):
ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGATGCTAGTGTAAGACA
TGTCTGGGACATGCATCGGCACGGAG
Found at i:50439896 original size:48 final size:46
Alignment explanation
Indices: 50439698--50439975 Score: 232
Period size: 48 Copynumber: 5.9 Consensus size: 46
50439688 GCTGCTATGT
50439698 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AT-TATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACGATATA-GA
* * *
50439744 AATGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-CTTGAGAT-GTA
1 GA-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC--GATATAG-A
* **
50439792 -AGCCAGTGTAAGACATGTTTGGGACATGCATTAGCTACG---T-GA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACGATATAGA
* * *
50439834 TGTGCTAGTGTAAGATATGTCTGGGACATGCATCGGCACGGATATAAGA
1 -GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-GATAT-AGA
* * *
50439883 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGGATATATGG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-GATATA-GA
* * *
50439931 GAGCCAGTGTAAGACATATCTAGGATATGGCATCGGCATCGATAT
1 GAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCA-CGATAT
50439976 GTGTAAGATT
Statistics
Matches: 191, Mismatches: 22, Indels: 35
0.77 0.09 0.14
Matches are distributed among these distances:
42 1 0.01
43 4 0.02
44 30 0.16
45 1 0.01
46 33 0.17
47 36 0.19
48 69 0.36
49 16 0.08
50 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACGATATAGA
Found at i:50443256 original size:40 final size:40
Alignment explanation
Indices: 50443197--50443345 Score: 262
Period size: 40 Copynumber: 3.7 Consensus size: 40
50443187 TATTCGGATG
50443197 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
50443237 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
50443277 ATAACCGGGCTAAGTCCCGAAGGCATTTGTTTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
50443317 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
50443346 AGCAAGTAGC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:50443389 original size:80 final size:80
Alignment explanation
Indices: 50443197--50443389 Score: 230
Period size: 80 Copynumber: 2.4 Consensus size: 80
50443187 TATTCGGATG
* * ** *
50443197 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAATCCCGAAGGCATTGGTTTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
50443262 TTTGTACGAGTTACT
66 TTTGTACAAGTTACT
* *
50443277 ATAACCGGGCTAAGTCCCGAAGGCATTTGTTTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAATCCCGAAGGCATTGGTTTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
50443342 TTTG-AGCAAG-TAGCT
66 TTTGTA-CAAGTTA-CT
* ** *
50443357 ATATCC-GGCTAAATTTCGAAGGTACTTGGTTTG
1 ATAACCGGGCTAAATCCCGAAGGCA-TTGGTTTG
50443390 GGAATGAGCG
Statistics
Matches: 100, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
79 17 0.17
80 83 0.83
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
ATAACCGGGCTAAATCCCGAAGGCATTGGTTTGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTACAAGTTACT
Found at i:50444896 original size:24 final size:22
Alignment explanation
Indices: 50444852--50444896 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
50444842 CGGCCTGAGG
*
50444852 ACACGGGCGTGTCCCTATTTCC
1 ACACGGGCGTGACCCTATTTCC
*
50444874 ACACGGGCATGTGACCCTGTTTC
1 ACACGGGC--GTGACCCTATTTC
50444897 ATGGGAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
24 11 0.58
ACGTcount: A:0.16, C:0.33, G:0.24, T:0.27
Consensus pattern (22 bp):
ACACGGGCGTGACCCTATTTCC
Found at i:50449416 original size:48 final size:46
Alignment explanation
Indices: 50449160--50449412 Score: 228
Period size: 46 Copynumber: 5.4 Consensus size: 46
50449150 ATGAAATGCT
* * *
50449160 GGACATGCATCAGCATTGAGACGAAAGCTAGTGTAAGACATGTCTG
1 GGACATGCATCGGCATCGAGATGAAAGCTAGTGTAAGACATGTCTG
* * * * *
50449206 GGACATGCATCGGCCTTGAGATGTAAGCCAGTGTAAGACATGTTTG
1 GGACATGCATCGGCATCGAGATGAAAGCTAGTGTAAGACATGTCTG
* *
50449252 GGACTTGCATCGGC-TACGAGATG--TGCTAGTGTAAGACATGTCTG
1 GGACATGCATCGGCAT-CGAGATGAAAGCTAGTGTAAGACATGTCTG
* *
50449296 GGACATGCATCGGCA-CGGATATAAGAGAGCTAGTGTAAGACATGTCTG
1 GGACATGCATCGGCATC-GAGAT--GAAAGCTAGTGTAAGACATGTCTG
* * * *
50449344 GGACATGCACCGGTA-CAGATATATGAAAGCTAGTGTAAGACCATATCTG
1 GGACATGCATCGGCATC-G--AGATGAAAGCTAGTGTAAGA-CATGTCTG
* *
50449393 GGATATGGCATCAGCATCGA
1 GGACAT-GCATCGGCATCGA
50449413 TATGTGTAAG
Statistics
Matches: 172, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 35 0.20
45 1 0.01
46 60 0.35
48 51 0.30
49 12 0.07
50 11 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GGACATGCATCGGCATCGAGATGAAAGCTAGTGTAAGACATGTCTG
Found at i:50453152 original size:26 final size:26
Alignment explanation
Indices: 50453123--50453230 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
50453113 TGGTACAAAT
50453123 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
50453149 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
50453175 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
50453201 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
50453227 TGAT
1 TGAT
50453231 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:50455247 original size:137 final size:137
Alignment explanation
Indices: 50455000--50455286 Score: 520
Period size: 137 Copynumber: 2.1 Consensus size: 137
50454990 GAGTAGTCTC
*
50455000 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
50455065 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACT
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
50455130 ACTGTTA
131 ACTGTTA
50455137 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
50455202 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
50455267 ACTGTTA
131 ACTGTTA
**
50455274 CCTGAATGGGCTT
1 CCCAAATGGGCTT
50455287 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
137 144 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTGTTA
Found at i:50458079 original size:20 final size:20
Alignment explanation
Indices: 50458044--50458094 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
50458034 CGTCATCACC
*
50458044 TAAAATATTATTTTGTTTTTA
1 TAAAATGTT-TTTTGTTTTTA
50458065 TAAAATGTTTTTTGTTTTTA
1 TAAAATGTTTTTTGTTTTTA
50458085 TAAAATGTTT
1 TAAAATGTTT
50458095 AGATTATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 21 0.72
21 8 0.28
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (20 bp):
TAAAATGTTTTTTGTTTTTA
Found at i:50458391 original size:44 final size:43
Alignment explanation
Indices: 50458336--50458428 Score: 159
Period size: 44 Copynumber: 2.1 Consensus size: 43
50458326 TAAACTTTGG
*
50458336 TTATACCTTTTCTTATTACTATTATTAATAATTGACTATCATCT
1 TTATCCCTTTTCTTATTACTATTATTAATAATTGAC-ATCATCT
*
50458380 TTATCCCTTTTCTTCTTACTATTATTAATAATTGACATCATCT
1 TTATCCCTTTTCTTATTACTATTATTAATAATTGACATCATCT
50458423 TTATCC
1 TTATCC
50458429 GGTAGTCTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
43 13 0.28
44 34 0.72
ACGTcount: A:0.27, C:0.19, G:0.02, T:0.52
Consensus pattern (43 bp):
TTATCCCTTTTCTTATTACTATTATTAATAATTGACATCATCT
Found at i:50470448 original size:54 final size:54
Alignment explanation
Indices: 50470366--50470473 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
50470356 GCTGCCTTCC
50470366 AACGCTTCCATTTATTTATTTTCAAATAAACTCAGCTATTTGGTTTAGATGTAT
1 AACGCTTCCATTTATTTATTTTCAAATAAACTCAGCTATTTGGTTTAGATGTAT
50470420 AACGCTTCCATTTATTTATTTTCAAATAAACTCAGCTATTTGGTTTAGATGTAT
1 AACGCTTCCATTTATTTATTTTCAAATAAACTCAGCTATTTGGTTTAGATGTAT
50470474 CTTCCTTAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (54 bp):
AACGCTTCCATTTATTTATTTTCAAATAAACTCAGCTATTTGGTTTAGATGTAT
Found at i:50473575 original size:54 final size:54
Alignment explanation
Indices: 50473486--50473854 Score: 393
Period size: 54 Copynumber: 6.8 Consensus size: 54
50473476 TTTACCTTCA
* * *
50473486 AGATTTTATGAATCTCGC-GATCTGCTAATTTACGATCATGACCTTCTACTTTCG
1 AGATTTTACGAATCTCACAG-TCTGCTGATTTACGATCATGACCTTCTACTTTCG
* * * * * *
50473540 AGATTTTACGAATCTCGCGGT-TCGCTGATTCACGATCACGACCTTCTGCTTTTG
1 AGATTTTACGAATCTCACAGTCT-GCTGATTTACGATCATGACCTTCTACTTTCG
* * * **
50473594 AGATTTTATGAATTTCACAGTCTGTTGATTTACGATCACCACCTTCTACTTTCG
1 AGATTTTACGAATCTCACAGTCTGCTGATTTACGATCATGACCTTCTACTTTCG
* ** * * *
50473648 AGATTTTACGAATCTTATGGTCTGCCGATTTATGATCATGACCTTCCACTTTCG
1 AGATTTTACGAATCTCACAGTCTGCTGATTTACGATCATGACCTTCTACTTTCG
* * * *
50473702 AGATTTTACGAATTTCACAGTCAGCTGATTTCCAATCATGACCTTCTACTTTCG
1 AGATTTTACGAATCTCACAGTCTGCTGATTTACGATCATGACCTTCTACTTTCG
* * * *
50473756 AGATTTTACGAATTTCACAGTCTGCTAATTTACAATCATGACCTTCTACTTTCA
1 AGATTTTACGAATCTCACAGTCTGCTGATTTACGATCATGACCTTCTACTTTCG
* ** * *
50473810 AGATTTTAC-AATTCTCACGGTCCACTGATTGACGATCACGACCTT
1 AGATTTTACGAA-TCTCACAGTCTGCTGATTTACGATCATGACCTT
50473855 TGTAACACTC
Statistics
Matches: 263, Mismatches: 48, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
53 3 0.01
54 258 0.98
55 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (54 bp):
AGATTTTACGAATCTCACAGTCTGCTGATTTACGATCATGACCTTCTACTTTCG
Found at i:50473761 original size:162 final size:162
Alignment explanation
Indices: 50473513--50473818 Score: 436
Period size: 162 Copynumber: 1.9 Consensus size: 162
50473503 CGATCTGCTA
* * * *
50473513 ATTTACGATCATGACCTTCTACTTTCGAGATTTTACGAATCTCGCGGTTCGCTGATTCACGATCA
1 ATTTACGATCATGACCTTCCACTTTCGAGATTTTACGAATCTCACAGTTCGCTGATTCACAATCA
* * * * * *
50473578 CGACCTTCTGCTTTTGAGATTTTATGAATTTCACAGTCTGTTGATTTACGATCACCACCTTCTAC
66 CGACCTTCTACTTTCGAGATTTTACGAATTTCACAGTCTGCTAATTTACAATCACCACCTTCTAC
*
50473643 TTTCGAGATTTTACGAATCTTATGGTCTGCCG
131 TTTCAAGATTTTACGAATCTTATGGTCTGCCG
* *
50473675 ATTTATGATCATGACCTTCCACTTTCGAGATTTTACGAATTTCACAG-TCAGCTGATTTC-CAAT
1 ATTTACGATCATGACCTTCCACTTTCGAGATTTTACGAATCTCACAGTTC-GCTGA-TTCACAAT
* **
50473738 CATGACCTTCTACTTTCGAGATTTTACGAATTTCACAGTCTGCTAATTTACAATCATGACCTTCT
64 CACGACCTTCTACTTTCGAGATTTTACGAATTTCACAGTCTGCTAATTTACAATCACCACCTTCT
50473803 ACTTTCAAGATTTTAC
129 ACTTTCAAGATTTTAC
50473819 AATTCTCACG
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
161 2 0.02
162 121 0.96
163 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (162 bp):
ATTTACGATCATGACCTTCCACTTTCGAGATTTTACGAATCTCACAGTTCGCTGATTCACAATCA
CGACCTTCTACTTTCGAGATTTTACGAATTTCACAGTCTGCTAATTTACAATCACCACCTTCTAC
TTTCAAGATTTTACGAATCTTATGGTCTGCCG
Found at i:50481554 original size:40 final size:40
Alignment explanation
Indices: 50481469--50481619 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
50481459 AATTGAATGA
* * *
50481469 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
50481509 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
50481550 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
50481589 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
50481620 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:50481633 original size:40 final size:40
Alignment explanation
Indices: 50481505--50481635 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
50481495 TATGCTGGAA
* * *
50481505 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
50481545 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
50481585 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
50481625 ATTATATCCGG
1 ATTATATCCGG
50481636 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:50496009 original size:34 final size:34
Alignment explanation
Indices: 50495971--50496035 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
50495961 GTACTAAATT
*
50495971 GGGCTAAGGCCCAAATTGATACTACTACTGTAGC
1 GGGCTAAGGCCCAAACTGATACTACTACTGTAGC
* * *
50496005 GGGCTAAGGCCCACACTGATATTGCTACTGT
1 GGGCTAAGGCCCAAACTGATACTACTACTGT
50496036 TAAGGGCTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (34 bp):
GGGCTAAGGCCCAAACTGATACTACTACTGTAGC
Found at i:50496043 original size:34 final size:34
Alignment explanation
Indices: 50495971--50496056 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
50495961 GTACTAAATT
* *
50495971 GGGCTAAGGCCCAAATTGATACTACTACTGTAGC
1 GGGCTAAGGCCCAAACTGATACTACTACTGTAGA
* * *
50496005 GGGCTAAGGCCCACACTGATATTGCTACTGTTA-A
1 GGGCTAAGGCCCAAACTGATACTACTACTG-TAGA
* *
50496039 GGGCTTAGGCCCAGACTG
1 GGGCTAAGGCCCAAACTG
50496057 TTTGCACTAC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 42 0.95
35 2 0.05
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (34 bp):
GGGCTAAGGCCCAAACTGATACTACTACTGTAGA
Found at i:50500953 original size:27 final size:26
Alignment explanation
Indices: 50500903--50501171 Score: 267
Period size: 27 Copynumber: 10.2 Consensus size: 26
50500893 GGTCGTTAAG
*
50500903 ACCCCAGTTT-TTAAATTACCGAAAT
1 ACCCCAGTTTGTAAAATTACCGAAAT
* *
50500928 ACCCTCAGTTTGTAAAATTTCTGAAAT
1 ACCC-CAGTTTGTAAAATTACCGAAAT
*
50500955 ACCCC-GATTTGTAAAATTACTGAAAT
1 ACCCCAG-TTTGTAAAATTACCGAAAT
***
50500981 A-CCCAGTTTGTAAAATTATTAAAAT
1 ACCCCAGTTTGTAAAATTACCGAAAT
*
50501006 ACCCCCAGTTTGTAAAATTACCAAAAT
1 A-CCCCAGTTTGTAAAATTACCGAAAT
*
50501033 ACCCCCAGTTTGTAAAATTACCAAAAT
1 A-CCCCAGTTTGTAAAATTACCGAAAT
*
50501060 ACCCCTAGTTTATAAAATTACCGAAAT
1 ACCCC-AGTTTGTAAAATTACCGAAAT
* * *
50501087 ACCCTTAATTTGTAAAATTACCAAAAT
1 ACCC-CAGTTTGTAAAATTACCGAAAT
* *
50501114 ACCCCTA-TGGTGTAAAATTACCAAAAT
1 ACCCC-AGT-TTGTAAAATTACCGAAAT
* * *
50501141 ACCCCTGTAATGTAAAATTATCGAAAT
1 ACCCCAGT-TTGTAAAATTACCGAAAT
50501168 ACCC
1 ACCC
50501172 TTGTAGTGTA
Statistics
Matches: 212, Mismatches: 21, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
25 26 0.12
26 32 0.15
27 154 0.73
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (26 bp):
ACCCCAGTTTGTAAAATTACCGAAAT
Found at i:50501099 original size:81 final size:79
Alignment explanation
Indices: 50500903--50501172 Score: 319
Period size: 81 Copynumber: 3.4 Consensus size: 79
50500893 GGTCGTTAAG
* * ** *
50500903 ACCCCAGTTT-TTAAATTACCGAAATACCCTCAGTTTGTAAAATTTCTGAAATACCCCGATTTGT
1 ACCCCAGTTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCCCATTTGT
**
50500967 AAAATTACTGAAAT
66 AAAATTACCAAAAT
*** *
50500981 A-CCCAGTTTGTAAAATTATTAAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCCAGTTTG
1 ACCCCAGTTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCCCA-TTTG
50501045 TAAAATTACCAAAAT
65 TAAAATTACCAAAAT
* * * * *
50501060 ACCCCTAGTTTATAAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTATGGT
1 ACCCC-AGTTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCCCAT-TT
50501125 GTAAAATTACCAAAAT
64 GTAAAATTACCAAAAT
* * *
50501141 ACCCCTGTAATGTAAAATTATCGAAATACCCT
1 ACCCCAGT-TTGTAAAATTACCGAAATACCCT
50501173 TGTAGTGTAA
Statistics
Matches: 162, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
77 8 0.05
78 41 0.25
79 18 0.11
80 6 0.04
81 89 0.55
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (79 bp):
ACCCCAGTTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACCAAAATACCCCCATTTGT
AAAATTACCAAAAT
Found at i:50501198 original size:14 final size:14
Alignment explanation
Indices: 50501179--50501206 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50501169 CCCTTGTAGT
50501179 GTAAAATTATCGAA
1 GTAAAATTATCGAA
50501193 GTAAAATTATCGAA
1 GTAAAATTATCGAA
50501207 ATACCCTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
GTAAAATTATCGAA
Found at i:50501202 original size:41 final size:41
Alignment explanation
Indices: 50501152--50501233 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
50501142 CCCCTGTAAT
*
50501152 GTAAAATTATCGAAATACCCTTGTAGTGTAAAATTATCGAA
1 GTAAAATTATCGAAATACCCTTGTAGTGTAAAATTAACGAA
50501193 GTAAAATTATCGAAATACCCTTGTAGTGTAAAATTAACGAA
1 GTAAAATTATCGAAATACCCTTGTAGTGTAAAATTAACGAA
50501234 ATACCCCTGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (41 bp):
GTAAAATTATCGAAATACCCTTGTAGTGTAAAATTAACGAA
Found at i:50501233 original size:27 final size:27
Alignment explanation
Indices: 50501193--50501244 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
50501183 AATTATCGAA
* *
50501193 GTAAAATTATCGAAATACCCTTGTAGT
1 GTAAAATTAACGAAATACCCCTGTAGT
50501220 GTAAAATTAACGAAATACCCCTGTA
1 GTAAAATTAACGAAATACCCCTGTA
50501245 AGGCAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (27 bp):
GTAAAATTAACGAAATACCCCTGTAGT
Found at i:50501252 original size:27 final size:27
Alignment explanation
Indices: 50501195--50501253 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
50501185 TTATCGAAGT
* * *
50501195 AAAATTATCGAAATACCCTTGTAGTGT
1 AAAATTAACGAAATACCCCTGTAGTGC
50501222 AAAATTAACGAAATACCCCTGTAAG-GC
1 AAAATTAACGAAATACCCCTGT-AGTGC
50501249 AAAAT
1 AAAAT
50501254 GACTGTTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.25
Consensus pattern (27 bp):
AAAATTAACGAAATACCCCTGTAGTGC
Found at i:50501253 original size:68 final size:68
Alignment explanation
Indices: 50501125--50501253 Score: 179
Period size: 68 Copynumber: 1.9 Consensus size: 68
50501115 CCCCTATGGT
* * *
50501125 GTAAAATTACCAAAATACCCCTGTAATGTAAAATTATCGAAATACCCTTGTAGTGTAAAATTATC
1 GTAAAATTACCAAAATACCCCTGTAATGTAAAATTAACGAAATACCCCTGTAGTGCAAAATTATC
50501190 GAA
66 GAA
* * * *
50501193 GTAAAATTATCGAAATACCCTTGTAGTGTAAAATTAACGAAATACCCCTGTAAG-GCAAAAT
1 GTAAAATTACCAAAATACCCCTGTAATGTAAAATTAACGAAATACCCCTGT-AGTGCAAAAT
50501254 GACTGTTTTG
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
68 51 0.96
69 2 0.04
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (68 bp):
GTAAAATTACCAAAATACCCCTGTAATGTAAAATTAACGAAATACCCCTGTAGTGCAAAATTATC
GAA
Found at i:50501705 original size:32 final size:32
Alignment explanation
Indices: 50501662--50501733 Score: 108
Period size: 32 Copynumber: 2.2 Consensus size: 32
50501652 ATATTTACCC
* *
50501662 ATGGCTGTGTGCCGATCATATTACAGCTACTG
1 ATGGCTGTGTGCCAATCAAATTACAGCTACTG
* *
50501694 ATGGCTTTGTGCCAATCAAATTACTGCTACTG
1 ATGGCTGTGTGCCAATCAAATTACAGCTACTG
50501726 ATGGCTGT
1 ATGGCTGT
50501734 AAGTCGTGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (32 bp):
ATGGCTGTGTGCCAATCAAATTACAGCTACTG
Found at i:50505211 original size:28 final size:29
Alignment explanation
Indices: 50505179--50505277 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
50505169 ATAATAAGCC
*
50505179 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
50505207 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
50505235 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
50505264 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50505278 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:50519712 original size:42 final size:42
Alignment explanation
Indices: 50519644--50519739 Score: 156
Period size: 42 Copynumber: 2.3 Consensus size: 42
50519634 TCATATAAAG
* *
50519644 TACACGAAATCAGATACGATGTCTATGTCCCAGACAGGGTCT
1 TACATGAAATCAGATACGATGCCTATGTCCCAGACAGGGTCT
*
50519686 TACATGAAATCAGATACGATGCCTATGTCCCAGACATGGTCT
1 TACATGAAATCAGATACGATGCCTATGTCCCAGACAGGGTCT
50519728 TACATGTAAATC
1 TACATG-AAATC
50519740 TAAAATTGAG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
42 45 0.90
43 5 0.10
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (42 bp):
TACATGAAATCAGATACGATGCCTATGTCCCAGACAGGGTCT
Found at i:50519765 original size:44 final size:42
Alignment explanation
Indices: 50519644--50519774 Score: 120
Period size: 42 Copynumber: 3.1 Consensus size: 42
50519634 TCATATAAAG
* * * * *
50519644 TACACGAAATCAGATACGATGTCTATGTCCCAGACAGGGTCT
1 TACATGAAATCAAATACGAGGCCTATGTCCCAGACACGGTCT
* * *
50519686 TACATGAAATCAGATACGATGCCTATGTCCCAGACATGGTCT
1 TACATGAAATCAAATACGAGGCCTATGTCCCAGACACGGTCT
* * * *
50519728 TACATGTAAATCTAAA-ATTGAGGCTTGTGTCCCAGACACAGTCT
1 TACATG-AAATC-AAATA-CGAGGCCTATGTCCCAGACACGGTCT
50519772 TAC
1 TAC
50519775 CCGATATCTC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
42 45 0.59
43 6 0.08
44 25 0.33
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (42 bp):
TACATGAAATCAAATACGAGGCCTATGTCCCAGACACGGTCT
Done.