Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 163 of 433
Found at i:50765648 original size:25 final size:25
Alignment explanation
Indices: 50765619--50765666 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50765609 TTATAATATG
* * *
50765619 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50765644 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50765667 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50765735 original size:20 final size:20
Alignment explanation
Indices: 50765710--50765768 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
50765700 TAAATATGGT
50765710 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
50765730 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
50765750 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
50765769 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:50765845 original size:24 final size:24
Alignment explanation
Indices: 50765818--50765960 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
50765808 GAGGAAGTGA
50765818 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50765842 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
50765866 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
50765889 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
50765913 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
50765937 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50765961 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:50765911 original size:47 final size:47
Alignment explanation
Indices: 50765818--50765960 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
50765808 GAGGAAGTGA
50765818 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
50765866 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
50765913 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
50765961 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:50765934 original size:71 final size:72
Alignment explanation
Indices: 50765818--50765961 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
50765808 GAGGAAGTGA
*
50765818 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
50765881 CCAGTTAT
65 CCAGTTAT
** * *
50765889 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
50765954 CAGTTAT
66 CAGTTAT
50765961 A
1 A
50765962 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:50766200 original size:31 final size:31
Alignment explanation
Indices: 50766148--50766226 Score: 119
Period size: 31 Copynumber: 2.6 Consensus size: 31
50766138 ATACCGTTTA
50766148 CAGTAATATG--AAAT-AAAAGGCTTCGGCC
1 CAGTAATATGAAAAATGAAAAGGCTTCGGCC
50766176 CAGTAATATGAAAAATGAAAAGGCTTCGGCC
1 CAGTAATATGAAAAATGAAAAGGCTTCGGCC
* *
50766207 CAGTATTATGAAATATGAAA
1 CAGTAATATGAAAAATGAAA
50766227 TATGAAAAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
28 10 0.22
30 4 0.09
31 32 0.70
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23
Consensus pattern (31 bp):
CAGTAATATGAAAAATGAAAAGGCTTCGGCC
Found at i:50772154 original size:30 final size:30
Alignment explanation
Indices: 50772120--50772180 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
50772110 TTGTTAAAAG
*
50772120 TGTGAAATAATGAAAGATATGGGCTGATAA
1 TGTGAAATAATGAAAGATACGGGCTGATAA
*
50772150 TGTGAAATAATGAAAGATACGGGCTGCTAA
1 TGTGAAATAATGAAAGATACGGGCTGATAA
50772180 T
1 T
50772181 AGTATATAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.41, C:0.07, G:0.26, T:0.26
Consensus pattern (30 bp):
TGTGAAATAATGAAAGATACGGGCTGATAA
Found at i:50772746 original size:23 final size:23
Alignment explanation
Indices: 50772716--50772770 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
50772706 GATCTTACTA
50772716 TTTCAGCTCATTGGAGCATACCG
1 TTTCAGCTCATTGGAGCATACCG
*
50772739 TTTCAGCTCATTGGAGCTTACCG
1 TTTCAGCTCATTGGAGCATACCG
50772762 TTTCAGCTC
1 TTTCAGCTC
50772771 GTATGAGCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (23 bp):
TTTCAGCTCATTGGAGCATACCG
Found at i:50772778 original size:23 final size:23
Alignment explanation
Indices: 50772670--50772792 Score: 99
Period size: 23 Copynumber: 5.3 Consensus size: 23
50772660 GGACTCGCCA
50772670 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCGTATGAGCTTACCG-T-T-T
* * * **
50772696 CATCTCGTAAGATCTTACTATTT
1 CAGCTCGTATGAGCTTACCGTTT
* *
50772719 CAGCTCAT-TGGAGCATACCGTTT
1 CAGCTCGTAT-GAGCTTACCGTTT
*
50772742 CAGCTCAT-TGGAGCTTACCGTTT
1 CAGCTCGTAT-GAGCTTACCGTTT
*
50772765 CAGCTCGTATGAGCTTACTGTTT
1 CAGCTCGTATGAGCTTACCGTTT
50772788 -AGCTC
1 CAGCTC
50772793 AATAAAGCTT
Statistics
Matches: 80, Mismatches: 15, Indels: 8
0.78 0.15 0.08
Matches are distributed among these distances:
22 5 0.06
23 57 0.71
24 2 0.03
25 1 0.01
26 15 0.19
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACCGTTT
Found at i:50775493 original size:58 final size:58
Alignment explanation
Indices: 50775392--50775513 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 58
50775382 GAATATGAAA
**
50775392 GAAAAAAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAATGTACTAAG
1 GAAAAAAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAATACTAAG
* ** ***
50775450 GAAAGAAAAGAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAAATACTAAG
1 GAAAAAAAAGAAAAAAAAATGTTCATCCTTCTC-CATAGGCTTGGCCGAAAATACTAAG
*
50775508 GGAAAA
1 GAAAAA
50775514 GGGGAGGATT
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
57 2 0.04
58 51 0.96
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (58 bp):
GAAAAAAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAATACTAAG
Found at i:50776765 original size:40 final size:40
Alignment explanation
Indices: 50776699--50776865 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
50776689 AAATTGAATG
* * *
50776699 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
50776738 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
50776778 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
50776818 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
50776858 ATATCCGG
1 ATATCCGG
50776866 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:50783492 original size:58 final size:58
Alignment explanation
Indices: 50783378--50783488 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 58
50783368 ATGAAAAAAA
*
50783378 AAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAATGTACTAAGGAAAG
1 AAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAATATACTAAGGAAAG
** ***
50783436 AAAAGAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAA-ATACTAAGG
1 AAAAGAAAAAAAAATGTTCATCCTTCTC-CATAGGCTTGGCCGAATATACTAAGG
50783489 GAAAAGGGGG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 10 0.22
58 36 0.78
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (58 bp):
AAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAATATACTAAGGAAAG
Found at i:50784745 original size:40 final size:40
Alignment explanation
Indices: 50784679--50784845 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
50784669 AAATTGAATG
* * *
50784679 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
50784718 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
50784758 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
50784798 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
50784838 ATATCCGG
1 ATATCCGG
50784846 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:50790696 original size:43 final size:43
Alignment explanation
Indices: 50790638--50790741 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 43
50790628 GAGATTACCC
* * * * * *
50790638 ATAAGACTATGTCTGGGAAATTGGCATCGTTAAT-CGATTTCGT
1 ATAAGACCATATCTGGGAAAGTGGCATCGAT-ATGCGATTGCAT
* * *
50790681 ATAAGACCCTATCTGGGATAGTGGCATCGATATGTGATTGCAT
1 ATAAGACCATATCTGGGAAAGTGGCATCGATATGCGATTGCAT
50790724 ATAAGACCATATCTGGGA
1 ATAAGACCATATCTGGGA
50790742 TACGACATTG
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 2 0.04
43 48 0.96
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (43 bp):
ATAAGACCATATCTGGGAAAGTGGCATCGATATGCGATTGCAT
Found at i:50793866 original size:40 final size:39
Alignment explanation
Indices: 50793821--50794028 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
50793811 CGGAATACAA
*
50793821 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
50793861 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
50793901 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
50793941 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
50793981 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
50794021 CCGGATAT
1 CCGGATAT
50794029 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:50793961 original size:80 final size:81
Alignment explanation
Indices: 50793821--50794026 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
50793811 CGGAATACAA
* * *
50793821 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
50793885 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
50793901 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
50793964 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
50793981 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
50794027 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:50796293 original size:16 final size:16
Alignment explanation
Indices: 50796255--50796297 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
50796245 ATCGGCAAAA
*
50796255 GCCGAAATGCCGAAAT
1 GCCGAAAAGCCGAAAT
** *
50796271 GTTGAAAAGTCGAAAT
1 GCCGAAAAGCCGAAAT
50796287 GCCGAAAAGCC
1 GCCGAAAAGCC
50796298 TAAAGTTTGG
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.26, T:0.14
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:50796568 original size:29 final size:29
Alignment explanation
Indices: 50796517--50796625 Score: 118
Period size: 29 Copynumber: 3.9 Consensus size: 29
50796507 CATGAATCTG
* *
50796517 AATGTGA-CTGGGCC-AACGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
50796544 AATGTAATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
**
50796573 CAA-GTGATTTGGGCCTAATGGGCCATACG
1 -AATGTGATTTGGGCCTAATGGGCCATATA
* *
50796602 AATATGA-TTGGGCTTAATGGGCCA
1 AATGTGATTTGGGCCTAATGGGCCA
50796626 GATACAGGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
27 6 0.09
28 24 0.34
29 38 0.54
30 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATA
Found at i:50800371 original size:46 final size:46
Alignment explanation
Indices: 50800320--50800448 Score: 156
Period size: 46 Copynumber: 2.8 Consensus size: 46
50800310 ATGGTTGAGC
*
50800320 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCA-AATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATGCACAAGG
* * * *
50800367 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTATCTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCA-CAAGG
50800412 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
50800449 GGGCGGGTTA
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
43 5 0.07
45 4 0.06
46 29 0.41
47 29 0.41
48 3 0.04
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCACAAGG
Found at i:50800709 original size:19 final size:20
Alignment explanation
Indices: 50800672--50800709 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
50800662 ATAAGGTGGT
50800672 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
50800692 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
50800710 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:50805240 original size:40 final size:40
Alignment explanation
Indices: 50805131--50805276 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
50805121 TTCGAATGGT
* * * *
50805131 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAA
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAA
* * *
50805172 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAA
* * *
50805212 ATCCGAGCTAATTCCCGAAGGCAATTGTGCGAATTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-A
* *
50805253 A-CCGGGCTATGTCCCGAAGACAAT
1 ATCCGGGCTAAGTCCCGAAGGCAAT
50805277 CGAGTGAGTC
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 59 0.66
41 30 0.34
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAA
Found at i:50810975 original size:47 final size:47
Alignment explanation
Indices: 50810906--50811010 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
50810896 CCCTTCGGGA
* * *
50810906 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGTC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
50810953 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
50811000 CTTATCACATA
1 CTTATCACATA
50811011 ATTAATACTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:50814756 original size:28 final size:29
Alignment explanation
Indices: 50814692--50814761 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
50814682 ATGTGACTGA
* * *
50814692 GCCTAACGGGCCATATAAATGTGATTTGG
1 GCCTAATGGGCCAGATAAATATGATTTGG
*
50814721 GCCTAATGGGCCAGATGAATATGA-TTGG
1 GCCTAATGGGCCAGATAAATATGATTTGG
*
50814749 GCTTAATGGGCCA
1 GCCTAATGGGCCA
50814762 AATACAGGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 16 0.44
29 20 0.56
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (29 bp):
GCCTAATGGGCCAGATAAATATGATTTGG
Found at i:50824600 original size:47 final size:47
Alignment explanation
Indices: 50824546--50824786 Score: 365
Period size: 47 Copynumber: 5.1 Consensus size: 47
50824536 TTAGGATTTT
** * *
50824546 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
50824593 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
50824640 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
50824687 ATGTGATGAATGTGAGCATGCATATGTCTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
50824734 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCTGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
50824781 ATGTGA
1 ATGTGA
50824787 AATATGTATG
Statistics
Matches: 177, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 177 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:50824621 original size:25 final size:25
Alignment explanation
Indices: 50824593--50824671 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
50824583 CGAATGGCCA
50824593 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
50824618 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
50824640 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
50824665 ATGTGAT
1 ATGTGAT
50824672 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:50824646 original size:22 final size:22
Alignment explanation
Indices: 50824575--50824693 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
50824565 GTATATATGA
50824575 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
50824597 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
50824622 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
50824644 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
50824669 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
50824691 GAT
1 GAT
50824694 GAATGTGAGC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 19 0.27
23 18 0.25
24 18 0.25
25 16 0.23
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:50824915 original size:98 final size:96
Alignment explanation
Indices: 50824757--50824940 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
50824747 GAACATGCAT
* *
50824757 ATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGCGGTAAAGCCGA
50824822 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
50824853 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGCGGTAAAGC
*
50824917 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
50824941 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 52 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGCGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:50824956 original size:50 final size:48
Alignment explanation
Indices: 50824756--50824940 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
50824746 TGAACATGCA
*
50824756 TATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
50824804 TATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
50824852 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
50824902 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
50824941 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.62
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:50825139 original size:37 final size:37
Alignment explanation
Indices: 50825086--50825157 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
50825076 GGAAATATAT
* *
50825086 TCCGGGTAAGATCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
50825123 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
50825158 CTTCTGAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:50827740 original size:37 final size:37
Alignment explanation
Indices: 50827658--50827742 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 37
50827648 GAAAATGACC
* *
50827658 AAAGAACAAAGAAAAGTTCACTCAAATTCTGGAAAAA
1 AAAGAGCAAAGAAAAGTTCACTCAAATTCTGCAAAAA
*
50827695 ATAAGAGCAAAGAAAAGATT-GCTCAAATTCT-CAAAAA
1 A-AAGAGCAAAGAAAAG-TTCACTCAAATTCTGCAAAAA
50827732 TAAAGAGCAAA
1 -AAAGAGCAAA
50827743 CTTTGCTCAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
37 15 0.36
38 25 0.60
39 2 0.05
ACGTcount: A:0.56, C:0.13, G:0.14, T:0.16
Consensus pattern (37 bp):
AAAGAGCAAAGAAAAGTTCACTCAAATTCTGCAAAAA
Found at i:50829914 original size:42 final size:42
Alignment explanation
Indices: 50829847--50829998 Score: 137
Period size: 42 Copynumber: 3.6 Consensus size: 42
50829837 AGATTACGTG
*
50829847 TAAGACCATATCTGGGATATGGCATCGATGTGAGACTTCATA
1 TAAGACCATATCTGGAATATGGCATCGATGTGAGACTTCATA
* * *
50829889 TAAGGCCATATCTGGAATATTGCATCGATGTGAGACTTCGTGA
1 TAAGACCATATCTGGAATATGGCATCGATGTGAGACTTCAT-A
* ** * ** * *
50829932 -AAGACCATAGCTGGGCTATTGGCATTGAAATGAGA-TCCCATG
1 TAAGACCATATCTGGAATA-TGGCATCGATGTGAGACT-TCATA
* *
50829974 GAAGACCATATCTAGAATATGGCAT
1 TAAGACCATATCTGGAATATGGCAT
50829999 TGGTATGATA
Statistics
Matches: 87, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
42 58 0.67
43 29 0.33
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (42 bp):
TAAGACCATATCTGGAATATGGCATCGATGTGAGACTTCATA
Found at i:50834969 original size:43 final size:42
Alignment explanation
Indices: 50834922--50835034 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
50834912 TTTGAACACG
* * * * *
50834922 TGTAAGACCATGTCTGGGATATTGGCATCGTTATTTGATTTCA
1 TGTAAGACCATATCTAGGATA-TGGCATCGATATGTGATTACA
* * *
50834965 TGTAAGACCCTATCTAGGACAGTGGGATCGATATGTGATTACA
1 TGTAAGACCATATCTAGGATA-TGGCATCGATATGTGATTACA
*
50835008 CGTAAGACCATATCTAGGATATGGCAT
1 TGTAAGACCATATCTAGGATATGGCAT
50835035 TGTACAAACT
Statistics
Matches: 57, Mismatches: 13, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
42 5 0.09
43 52 0.91
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCGATATGTGATTACA
Found at i:50840692 original size:32 final size:32
Alignment explanation
Indices: 50840609--50840695 Score: 111
Period size: 32 Copynumber: 2.7 Consensus size: 32
50840599 CCTTCAATAG
* *
50840609 CGGTATTATAATTGGCACAAAGCCATCGGTAA
1 CGGTATTATAATTGGCACACAGCCATCAGTAA
* ** *
50840641 CTGTATTATGTTTGGCACACAGCCATCAGTGA
1 CGGTATTATAATTGGCACACAGCCATCAGTAA
*
50840673 CGGTAATATAATTGGCACACAGC
1 CGGTATTATAATTGGCACACAGC
50840696 ATTGGGCAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (32 bp):
CGGTATTATAATTGGCACACAGCCATCAGTAA
Found at i:50841334 original size:27 final size:27
Alignment explanation
Indices: 50841215--50841340 Score: 184
Period size: 27 Copynumber: 4.7 Consensus size: 27
50841205 GTGTTTCAGA
**
50841215 AATTTTACAAGCCAGGGGTATTTTGGT
1 AATTTTACAAATCAGGGGTATTTTGGT
*
50841242 AATTTTAC-AATCTAGAGGTATTTTGGT
1 AATTTTACAAATC-AGGGGTATTTTGGT
*
50841269 AATTTTACAAATCAGGAGTATTTTGGT
1 AATTTTACAAATCAGGGGTATTTTGGT
*
50841296 AATTTTACAAATCAGGGGTATTTCGGT
1 AATTTTACAAATCAGGGGTATTTTGGT
50841323 AATTTTACAAATC-GGGGT
1 AATTTTACAAATCAGGGGT
50841341 CTTAACGACC
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 7 0.08
27 79 0.88
28 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AATTTTACAAATCAGGGGTATTTTGGT
Found at i:50841334 original size:54 final size:54
Alignment explanation
Indices: 50841178--50841335 Score: 185
Period size: 54 Copynumber: 2.9 Consensus size: 54
50841168 CCCTATAGGG
* * * * * * ** *
50841178 GTATTTTGGTAATTTTGCACTAC-AAAGGTGTTTCAGAAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAT-CTAGAGGTATTTCGGTAATTTTACAAATCAGGA
*
50841232 GTATTTTGGTAATTTTACAATCTAGAGGTATTTTGGTAATTTTACAAATCAGGA
1 GTATTTTGGTAATTTTACAATCTAGAGGTATTTCGGTAATTTTACAAATCAGGA
*
50841286 GTATTTTGGTAATTTTACAAATC-AGGGGTATTTCGGTAATTTTACAAATC
1 GTATTTTGGTAATTTTAC-AATCTAGAGGTATTTCGGTAATTTTACAAATC
50841336 GGGGTCTTAA
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 1 0.01
54 85 0.94
55 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAATCTAGAGGTATTTCGGTAATTTTACAAATCAGGA
Found at i:50847202 original size:49 final size:51
Alignment explanation
Indices: 50847086--50847212 Score: 195
Period size: 49 Copynumber: 2.5 Consensus size: 51
50847076 CAGATACCCG
*
50847086 GTGGCCTACACATAGTACCACACTTGTGAACAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGAACAAAGCTATC-TTCTTCACAAA
* *
50847138 GTGGCCTTCACATAGTACCACACTTGTG-ACCAAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGAACAAAGCTATCTTCTTCACAAA
*
50847187 GTGGCCTTCATATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
50847213 AGTCACTAGT
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
49 34 0.48
51 10 0.14
52 27 0.38
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGAACAAAGCTATCTTCTTCACAAA
Found at i:50848382 original size:45 final size:45
Alignment explanation
Indices: 50848318--50848409 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
50848308 AACCATTCCA
50848318 ATGGCTAATCGTTTCCAAACATTTCCATACCTCTTAATGATCAAC
1 ATGGCTAATCGTTTCCAAACATTTCCATACCTCTTAATGATCAAC
50848363 ATGGCTAATCGTTTCCAAACATTTCCATACCTCTTAATGATCAAC
1 ATGGCTAATCGTTTCCAAACATTTCCATACCTCTTAATGATCAAC
50848408 AT
1 AT
50848410 ACAAAACGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.34
Consensus pattern (45 bp):
ATGGCTAATCGTTTCCAAACATTTCCATACCTCTTAATGATCAAC
Found at i:50849128 original size:80 final size:81
Alignment explanation
Indices: 50849039--50849193 Score: 233
Period size: 80 Copynumber: 1.9 Consensus size: 81
50849029 CCCGGTTATA
* * * *
50849039 GTAATTCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGG
1 GTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAGTAACTTAGCACAAAAGCCTTCGG
50849102 GACTTAACCCGATTTTG
65 GACTTAACCCGATTTTG
*
50849119 GTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGG
1 GTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGG
*
50849184 ACTTAGCCCG
66 ACTTAACCCG
50849194 GATACCATTC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 40 0.60
81 27 0.40
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
GTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGG
ACTTAACCCGATTTTG
Found at i:50849171 original size:41 final size:39
Alignment explanation
Indices: 50849029--50849196 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 39
50849019 CGAGACATAG
* *
50849029 CCCGG-TTATAGTAATTCGCACAATTGCCTTCGGGAATTA
1 CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAATTA
*
50849068 GCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
1 -CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATT-A
*
50849109 CCC-GATTTTGGTAACTCGCACAAATGCCTTCGGGAATTGA
1 CCCGGA-TTTAGTAACTCGCACAAATGCCTTCGGGAATT-A
* * * *
50849149 CCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGAATTA
50849189 GCCCGGAT
1 -CCCGGAT
50849197 ACCATTCGAA
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
39 2 0.02
40 77 0.69
41 32 0.29
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTA
Found at i:50852674 original size:30 final size:29
Alignment explanation
Indices: 50852580--50852681 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
50852570 TATAGTGAAT
* * *
50852580 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
50852609 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
50852637 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
50852667 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50852682 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:50860561 original size:30 final size:29
Alignment explanation
Indices: 50860467--50860568 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
50860457 TATAGTGAAT
* * *
50860467 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
50860496 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
50860524 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
50860554 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50860569 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:50869282 original size:28 final size:28
Alignment explanation
Indices: 50869242--50869295 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
50869232 CTCGTTCAAC
50869242 AAGTACAACAAACTCTTTTATCTCTAGA
1 AAGTACAACAAACTCTTTTATCTCTAGA
50869270 AAGTACAACAAACTCTTTTATCTCTA
1 AAGTACAACAAACTCTTTTATCTCTA
50869296 AAATCCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (28 bp):
AAGTACAACAAACTCTTTTATCTCTAGA
Found at i:50871699 original size:43 final size:43
Alignment explanation
Indices: 50871651--50871789 Score: 156
Period size: 44 Copynumber: 3.2 Consensus size: 43
50871641 ATCTCAAACG
* *
50871651 TGGTCTTACATGTAATCAAATATCAATGCCGCTGTCCCAGACA
1 TGGTCTTACATGTAATCAAATATCGATGCCGATGTCCCAGACA
* * *
50871694 AGGTCTTACACGAAATCAAATA-CGATGCCGATGTCCCAGACA
1 TGGTCTTACATGTAATCAAATATCGATGCCGATGTCCCAGACA
* * * * *
50871736 TGGCCGTACATATAAATCATAA-GTCGATGCCAATGTCCCAGACA
1 TGGTCTTACATGT-AATCA-AATATCGATGCCGATGTCCCAGACA
50871780 TGGTCTTACA
1 TGGTCTTACA
50871790 CGAAAACACA
Statistics
Matches: 78, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 25 0.32
43 24 0.31
44 29 0.37
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
TGGTCTTACATGTAATCAAATATCGATGCCGATGTCCCAGACA
Found at i:50886629 original size:26 final size:26
Alignment explanation
Indices: 50886593--50886644 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
50886583 ATTCTTTTGC
*
50886593 TTACACCATTTCCTTTATATGAAAAT
1 TTACACCATTTCATTTATATGAAAAT
50886619 TTACACCATTTCATTTATATGAAAAT
1 TTACACCATTTCATTTATATGAAAAT
50886645 AGACTCAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.42
Consensus pattern (26 bp):
TTACACCATTTCATTTATATGAAAAT
Found at i:50894933 original size:66 final size:68
Alignment explanation
Indices: 50894857--50895043 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
50894847 TAGTACCACT
*
50894857 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
50894919 CACG
65 CACG
50894923 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
50894988 ATCACG
63 ATCACG
50894994 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
50895044 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:50894968 original size:71 final size:71
Alignment explanation
Indices: 50894880--50895043 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50894870 CGATTTGTCT
50894880 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50894945 CTTTCA
66 CTTTCA
50894951 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50895016 CTTTCA
66 CTTTCA
50895022 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
50895044 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:50895081 original size:71 final size:70
Alignment explanation
Indices: 50894880--50895077 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
50894870 CGATTTGTCT
* * *
50894880 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
50894945 CTTTCA
65 CTTTCA
* * *
50894951 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
50895016 CTTTCA
65 CTTTCA
* *
50895022 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
50895078 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:50899694 original size:70 final size:71
Alignment explanation
Indices: 50899544--50899706 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
50899534 GAGATGTATC
50899544 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50899609 AGGACA
66 AGGACA
50899615 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50899679 AGGACA
66 AGGACA
50899685 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50899707 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50901846 original size:80 final size:79
Alignment explanation
Indices: 50901713--50901879 Score: 214
Period size: 80 Copynumber: 2.1 Consensus size: 79
50901703 AAATTGAATG
*
50901713 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
50901778 TTGTGCA-AGTGGCT
66 TTGTGCACA-TGGCT
* ** *
50901792 ATATCCGGGCTAAGACCCGAAGGC-ATTCATGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
50901855 CATTTGTGCACATGGTT
63 CAATTGTGCACATGGCT
50901872 ATATCCGG
1 ATATCCGG
50901880 TTATATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
79 18 0.23
80 58 0.75
81 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCACATGGCT
Found at i:50901858 original size:40 final size:40
Alignment explanation
Indices: 50901713--50901856 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
50901703 AAATTGAATG
* *
50901713 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGC-GAGTAATT
* * * ***
50901752 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTAATT
*
50901792 ATATCCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCGAGTAATT
*
50901832 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
50901857 TTTGTGCACA
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.19
40 70 0.81
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTAATT
Found at i:50901877 original size:40 final size:39
Alignment explanation
Indices: 50901750--50901879 Score: 152
Period size: 40 Copynumber: 3.3 Consensus size: 39
50901740 ATGCTGGAAA
* *
50901750 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* ** * **
50901790 CTATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
50901830 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
50901870 TTATATCCGG
1 TTATATCCGG
50901880 TTATATTCCG
Statistics
Matches: 72, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 70 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:50906891 original size:18 final size:19
Alignment explanation
Indices: 50906867--50906915 Score: 77
Period size: 18 Copynumber: 2.7 Consensus size: 19
50906857 GGTTTTTAAT
50906867 CTGTTTTTGATAATTTTTA
1 CTGTTTTTGATAATTTTTA
50906886 -TGTTTTTGATAATTTTTA
1 CTGTTTTTGATAATTTTTA
50906904 CT-TTTTTG-TAAT
1 CTGTTTTTGATAAT
50906916 CGTTCTTTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.14
18 24 0.83
19 1 0.03
ACGTcount: A:0.20, C:0.04, G:0.10, T:0.65
Consensus pattern (19 bp):
CTGTTTTTGATAATTTTTA
Found at i:50924852 original size:80 final size:79
Alignment explanation
Indices: 50924716--50924898 Score: 208
Period size: 80 Copynumber: 2.3 Consensus size: 79
50924706 GAATCACGTA
* * * **
50924716 CCTTCGGGATTTA-ACCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
* *
50924780 AACTTGCACAATTG
66 AACTAGCACAAATG
* ** *
50924794 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAAC-ACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
50924858 ATCACTAGCATAAATG
64 ATAACTAGCACAAATG
*
50924874 CCTTCGGGACTTAGCCCGGGTATAA
1 CCTTCGGGACTTAGCCCGGATATAA
50924899 TTCAAATGCT
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 11 0.13
79 11 0.13
80 63 0.72
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATG
Found at i:50924899 original size:40 final size:41
Alignment explanation
Indices: 50924730--50924899 Score: 188
Period size: 40 Copynumber: 4.3 Consensus size: 41
50924720 CGGGATTTAA
* * *
50924730 CCGGATATAA-C-ACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
50924769 CCGGATTTGGT-AACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* *
50924809 CCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* *
50924849 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
*
50924889 CCGGGTATAAT
1 CCGGATATAAT
50924900 TCAAATGCTC
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 7 0.06
40 102 0.93
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50932789 original size:40 final size:40
Alignment explanation
Indices: 50932721--50932883 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
50932711 CGGGATTTAA
** *
50932721 CCGGATATAAC-ACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
50932760 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
50932800 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
50932840 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
50932880 CCGG
1 CCGG
50932884 GTATCATTCA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
39 9 0.09
40 93 0.89
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:50932843 original size:80 final size:79
Alignment explanation
Indices: 50932707--50932883 Score: 205
Period size: 80 Copynumber: 2.2 Consensus size: 79
50932697 GAATCACGTA
* * * **
50932707 CCTTCGGGATTTA-ACCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
* *
50932771 AACTTGCACAATTG
66 AACTAGCACAAATG
* ** *
50932785 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAAC-ACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
50932849 ATCACTAGCATAAATG
64 ATAACTAGCACAAATG
50932865 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50932884 GTATCATTCA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 11 0.13
79 11 0.13
80 58 0.71
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAACACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATG
Found at i:50934361 original size:24 final size:24
Alignment explanation
Indices: 50934333--50934386 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
50934323 TCGATTACAT
50934333 GCACTATTAGGTCCTTATAGATTA
1 GCACTATTAGGTCCTTATAGATTA
50934357 GCACTATTAGGTCCTTATAGATTA
1 GCACTATTAGGTCCTTATAGATTA
50934381 GC-CTAT
1 GCACTAT
50934387 CACATTTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 4 0.13
24 26 0.87
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (24 bp):
GCACTATTAGGTCCTTATAGATTA
Found at i:50943047 original size:15 final size:15
Alignment explanation
Indices: 50943023--50943100 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
50943013 AGGAAACCGA
50943023 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
50943038 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
50943052 AATAAAGAATTCC-AG
1 -ATAAAGAAATCCAAG
* *
50943067 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
50943083 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
50943098 ATA
1 ATA
50943101 TGATACTATG
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
14 2 0.04
15 49 0.94
16 1 0.02
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:50943056 original size:30 final size:30
Alignment explanation
Indices: 50943021--50943100 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
50943011 CAAGGAAACC
*
50943021 GAATAAAGAAATCCAAGATAGAGAAATCCA
1 GAATAAAGAAATCCAAGATAAAGAAATCCA
* *
50943051 GAATAAAGAATTCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAATCCA
* *
50943081 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
50943101 TGATACTATG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 2 0.05
30 38 0.90
31 2 0.05
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAATCCA
Found at i:50946922 original size:11 final size:11
Alignment explanation
Indices: 50946906--50946943 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
50946896 TGTCCTCAAG
50946906 AAAACTAAACA
1 AAAACTAAACA
50946917 AAAACTAAA-A
1 AAAACTAAACA
50946927 ATAAACTAAACTA
1 A-AAACTAAAC-A
50946940 AAAA
1 AAAA
50946944 TAGAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 17 0.71
12 3 0.12
13 2 0.08
ACGTcount: A:0.74, C:0.13, G:0.00, T:0.13
Consensus pattern (11 bp):
AAAACTAAACA
Found at i:50946935 original size:22 final size:23
Alignment explanation
Indices: 50946907--50946953 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
50946897 GTCCTCAAGA
50946907 AAACTAAAC-AAAAACTA-AAAAT
1 AAACTAAACTAAAAA-TAGAAAAT
50946929 AAACTAAACTAAAAATAGAAAAT
1 AAACTAAACTAAAAATAGAAAAT
50946952 AA
1 AA
50946954 CATGCAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.72, C:0.11, G:0.02, T:0.15
Consensus pattern (23 bp):
AAACTAAACTAAAAATAGAAAAT
Found at i:50949457 original size:16 final size:18
Alignment explanation
Indices: 50949426--50949458 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
50949416 CTCCTATGTG
50949426 ATGTATGGATCTATATTC
1 ATGTATGGATCTATATTC
50949444 ATGTA-GGA-CTATATT
1 ATGTATGGATCTATATT
50949459 TTAGCATGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.42
Consensus pattern (18 bp):
ATGTATGGATCTATATTC
Found at i:50949732 original size:38 final size:38
Alignment explanation
Indices: 50949677--50949759 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
50949667 TACTACTTGG
*
50949677 AGTGTAGGGATAGGTGGGTTAATTATATCCCCATATGA
1 AGTGTAGGGATAGGTGGGTTAATTATATCCCCACATGA
* *
50949715 AGTGTAGGGAT-GCGTGGGTTGATTATATCCCCACATGG
1 AGTGTAGGGATAG-GTGGGTTAATTATATCCCCACATGA
50949753 AGTGTAG
1 AGTGTAG
50949760 CGTTGGACGG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.02
38 40 0.98
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.30
Consensus pattern (38 bp):
AGTGTAGGGATAGGTGGGTTAATTATATCCCCACATGA
Found at i:50950308 original size:18 final size:18
Alignment explanation
Indices: 50950285--50950329 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
50950275 GCGAAAAGAG
* *
50950285 ACGTTTTGAAAATTAATA
1 ACGTTTTGAAAATAAACA
50950303 ACGTTTTGAAAATAAACA
1 ACGTTTTGAAAATAAACA
*
50950321 ACTTTTTGA
1 ACGTTTTGA
50950330 TAATGATTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (18 bp):
ACGTTTTGAAAATAAACA
Found at i:50950690 original size:23 final size:23
Alignment explanation
Indices: 50950644--50950691 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
50950634 TGTAAGTTCT
*
50950644 CTGAAACTATTATATGTCTTAAA
1 CTGAAACTATTATATGTCTAAAA
*
50950667 CTGAAACTGTTATGAT-TCTAAAA
1 CTGAAACTATTAT-ATGTCTAAAA
50950690 CT
1 CT
50950692 ATTATAGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (23 bp):
CTGAAACTATTATATGTCTAAAA
Found at i:50954537 original size:40 final size:39
Alignment explanation
Indices: 50954416--50954539 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
50954406 TGTGAATGAA
* *
50954416 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGACAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
50954455 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* **
50954494 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCGTT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
50954534 TGTGCG
1 TGTGCG
50954540 GGTTACCATA
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 59 0.79
40 16 0.21
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:50959160 original size:33 final size:33
Alignment explanation
Indices: 50959114--50959179 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
50959104 ATGGTTGAGA
*
50959114 GATTGCAGGAGAGTCTTGAGGAGTGGATCAAGG
1 GATTGCAGAAGAGTCTTGAGGAGTGGATCAAGG
* * *
50959147 GATTGGAGAAGAGTTTTGAGGAGTGGTTCAAGG
1 GATTGCAGAAGAGTCTTGAGGAGTGGATCAAGG
50959180 AAAGGGGGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.06, G:0.42, T:0.24
Consensus pattern (33 bp):
GATTGCAGAAGAGTCTTGAGGAGTGGATCAAGG
Found at i:50961563 original size:47 final size:47
Alignment explanation
Indices: 50961494--50961588 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
50961484 GTTTGGGGTG
50961494 TTACATTTTGTACACATTTCCAAGGCACCAAAACCCTAAAAAAACAT
1 TTACATTTTGTACACATTTCCAAGGCACCAAAACCCTAAAAAAACAT
50961541 TTACATTTTGTACACATTTCCAAGGCACCAAAACCCTAAAAAAACAT
1 TTACATTTTGTACACATTTCCAAGGCACCAAAACCCTAAAAAAACAT
50961588 T
1 T
50961589 CATATAATTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.42, C:0.25, G:0.06, T:0.26
Consensus pattern (47 bp):
TTACATTTTGTACACATTTCCAAGGCACCAAAACCCTAAAAAAACAT
Found at i:50965102 original size:27 final size:27
Alignment explanation
Indices: 50965072--50965123 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
50965062 TAAAACAAAA
50965072 ATTAAAATCATCCCAAATAAAAAAATG
1 ATTAAAATCATCCCAAATAAAAAAATG
50965099 ATTAAAATCATCCCAAATAAAAAAA
1 ATTAAAATCATCCCAAATAAAAAAA
50965124 ATGAAGTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.62, C:0.15, G:0.02, T:0.21
Consensus pattern (27 bp):
ATTAAAATCATCCCAAATAAAAAAATG
Found at i:50970474 original size:8 final size:8
Alignment explanation
Indices: 50970463--50970487 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50970453 AGAGGAAAAA
50970463 GATCATGG
1 GATCATGG
50970471 GATCATGG
1 GATCATGG
50970479 GATCATGG
1 GATCATGG
50970487 G
1 G
50970488 CCCACTCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.40, T:0.24
Consensus pattern (8 bp):
GATCATGG
Found at i:50975128 original size:78 final size:79
Alignment explanation
Indices: 50974967--50975142 Score: 207
Period size: 79 Copynumber: 2.2 Consensus size: 79
50974957 TCGAATGATG
* *
50974967 TCCGGGCTAAGTCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGTTAAGTCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTG
**
50975032 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
* * * *
50975046 TCCGGGTTAAGTCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCGAAGGCATTT
1 TCCGGGTTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
*
50975109 GAACGAG-TAGCTATA
65 GAACGAGTTA-CTAAA
*
50975124 TCC-GGTTAAACTCCGAAGG
1 TCCGGGTT-AAGTCCGAAGG
50975143 TACGTGATTC
Statistics
Matches: 84, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 6 0.07
78 35 0.42
79 36 0.43
80 7 0.08
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTG
AACGAGTTACTAAA
Found at i:50975142 original size:39 final size:39
Alignment explanation
Indices: 50974967--50975128 Score: 202
Period size: 39 Copynumber: 4.1 Consensus size: 39
50974957 TCGAATGATG
* *
50974967 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTATA
* *
50975006 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATA
*
50975046 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
* * **
50975085 ACCGGGCTATGTCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTA-CTATA
50975124 TCCGG
1 TCCGG
50975129 TTAAACTCCG
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.02
39 72 0.67
40 26 0.24
41 7 0.07
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:50980726 original size:39 final size:40
Alignment explanation
Indices: 50980626--50980770 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
50980616 TCGAATGATG
* * *
50980626 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
50980666 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50980706 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50980746 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50980771 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
39 35 0.38
40 50 0.54
41 8 0.09
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50980777 original size:79 final size:79
Alignment explanation
Indices: 50980626--50980803 Score: 193
Period size: 79 Copynumber: 2.2 Consensus size: 79
50980616 TCGAATGATG
* *
50980626 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGT-CCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
50980691 GTGCGAGTTA-CTAAA
65 GAACGAG-TAGCTAAA
* * * *
50980706 TCCGGGTTAAGTCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATT
1 TCCGGGTTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCATT
*
50980769 TGAACGAGTAGCTATA
64 TGAACGAGTAGCTAAA
*
50980785 TCC-GGTTAAACTCCGAAGG
1 TCCGGGTT-AAGTCCGAAGG
50980804 TACGTGATTC
Statistics
Matches: 84, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
78 7 0.08
79 59 0.70
80 18 0.21
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTTG
AACGAGTAGCTAAA
Found at i:50988793 original size:40 final size:40
Alignment explanation
Indices: 50988710--50988895 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
50988700 TTCGATGATG
* * * *
50988710 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
50988750 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50988790 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
50988830 TCCGGGTTAAGTCCCGAAGGCATTTGTGTTAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50988871 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50988896 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50988902 original size:80 final size:79
Alignment explanation
Indices: 50988763--50988918 Score: 208
Period size: 80 Copynumber: 2.0 Consensus size: 79
50988753 GGACTAAGAT
* **
50988763 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
50988827 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
** *
50988843 CCGAAGGCATTTGTGTTAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
*
50988907 ATATCCGGTTAA
65 AAATCCGGTTAA
50988919 ACTCCGAAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 8 0.12
80 57 0.85
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:50991738 original size:16 final size:16
Alignment explanation
Indices: 50991687--50991731 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 16
50991677 GGGTGAGAAG
50991687 TAAAAGTTTTAGGGGAAAA
1 TAAAAGTTTT-GGGG--AA
50991706 TAAAAAGTTTTGGGGAA
1 T-AAAAGTTTTGGGGAA
50991723 TAAAAGTTT
1 TAAAAGTTT
50991732 GAGGGAAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 8 0.32
17 3 0.12
19 5 0.20
20 9 0.36
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.31
Consensus pattern (16 bp):
TAAAAGTTTTGGGGAA
Found at i:50992087 original size:9 final size:9
Alignment explanation
Indices: 50992069--50992103 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
50992059 TAGTTTGATC
50992069 TTCGAATTA
1 TTCGAATTA
*
50992078 TTCTAATTA
1 TTCGAATTA
*
50992087 TTCGAGTTA
1 TTCGAATTA
50992096 TTCGAATT
1 TTCGAATT
50992104 CGAAAACTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (9 bp):
TTCGAATTA
Found at i:50994040 original size:118 final size:118
Alignment explanation
Indices: 50993832--50994069 Score: 440
Period size: 118 Copynumber: 2.0 Consensus size: 118
50993822 CAACTTTATA
*
50993832 TCAACATACCACTGGTGGAAGCATTAGAGAAAATTCCAATTAAGTAAAGTTCATGAAGGACATAT
1 TCAACATACCACTGGTGGAAGCATTAGAGAAAATGCCAATTAAGTAAAGTTCATGAAGGACATAT
*
50993897 TGTCAAAGAAGCACAGACTAGGGGAATCTGAAACTGCTGCTCTCATTGAAGGG
66 CGTCAAAGAAGCACAGACTAGGGGAATCTGAAACTGCTGCTCTCATTGAAGGG
50993950 TCAACATACCACTGGTGGAAGCATTAGAGAAAATGCCAATTAAGTAAAGTTCATGAAGGACATAT
1 TCAACATACCACTGGTGGAAGCATTAGAGAAAATGCCAATTAAGTAAAGTTCATGAAGGACATAT
* *
50994015 CGTCAAAGAAGCACAGACTAGGGGAATTTGAAACTGTTGCTCTCATTGAAGGG
66 CGTCAAAGAAGCACAGACTAGGGGAATCTGAAACTGCTGCTCTCATTGAAGGG
50994068 TC
1 TC
50994070 CATAGTAATG
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 116 1.00
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (118 bp):
TCAACATACCACTGGTGGAAGCATTAGAGAAAATGCCAATTAAGTAAAGTTCATGAAGGACATAT
CGTCAAAGAAGCACAGACTAGGGGAATCTGAAACTGCTGCTCTCATTGAAGGG
Found at i:51000705 original size:19 final size:19
Alignment explanation
Indices: 51000683--51000719 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
51000673 ACTTAGCATA
51000683 CTTGCGAATTTTTAGCTTG
1 CTTGCGAATTTTTAGCTTG
51000702 CTTGCGAATTTTTAGCTT
1 CTTGCGAATTTTTAGCTT
51000720 AATTTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.19, T:0.49
Consensus pattern (19 bp):
CTTGCGAATTTTTAGCTTG
Found at i:51002045 original size:12 final size:12
Alignment explanation
Indices: 51002030--51002056 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51002020 TTTCATGTGG
51002030 ATTGGGGTAGTC
1 ATTGGGGTAGTC
51002042 ATTGGGGTAGTC
1 ATTGGGGTAGTC
51002054 ATT
1 ATT
51002057 TCTTTAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.07, G:0.37, T:0.37
Consensus pattern (12 bp):
ATTGGGGTAGTC
Found at i:51002853 original size:13 final size:13
Alignment explanation
Indices: 51002835--51002860 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51002825 TTCTAAATAC
51002835 TGTATTTGTATTT
1 TGTATTTGTATTT
51002848 TGTATTTGTATTT
1 TGTATTTGTATTT
51002861 AGGGGTGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.69
Consensus pattern (13 bp):
TGTATTTGTATTT
Found at i:51005085 original size:10 final size:9
Alignment explanation
Indices: 51005061--51005094 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
51005051 GAATAGGGAG
51005061 TAAATTGCA
1 TAAATTGCA
*
51005070 TAAATTTCA
1 TAAATTGCA
51005079 TTAAATTGCA
1 -TAAATTGCA
51005089 TAAATT
1 TAAATT
51005095 TCATTTTCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (9 bp):
TAAATTGCA
Found at i:51005085 original size:19 final size:19
Alignment explanation
Indices: 51005061--51005099 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
51005051 GAATAGGGAG
51005061 TAAATTGCATAAATTTCAT
1 TAAATTGCATAAATTTCAT
51005080 TAAATTGCATAAATTTCAT
1 TAAATTGCATAAATTTCAT
51005099 T
1 T
51005100 TTCCGAGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (19 bp):
TAAATTGCATAAATTTCAT
Found at i:51006919 original size:29 final size:29
Alignment explanation
Indices: 51006880--51006958 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
51006870 CTTAATAATC
*
51006880 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
51006910 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
51006939 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
51006959 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:51008092 original size:17 final size:18
Alignment explanation
Indices: 51008055--51008092 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
51008045 CACTTTTTTT
51008055 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
51008074 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
51008091 TT
1 TT
51008093 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:51008828 original size:57 final size:57
Alignment explanation
Indices: 51008689--51008831 Score: 166
Period size: 57 Copynumber: 2.5 Consensus size: 57
51008679 CCTCATTTCT
* * *
51008689 GATAGGATTTAGCCTGGACAGGTAATCCTGATATAAGTCCTCTCGAGCATATGTTATG
1 GATAGGATTTAGCCTGGACAGGTAATCC-GATATAAGTCCTCTAGAGCATATGTCATA
* * *
51008747 GATTGGATTTAGCCCGGACAGGTAATCC-ATATCAAG-CTCTTTAGAGCATATGTCATAA
1 GATAGGATTTAGCCTGGACAGGTAATCCGATAT-AAGTC-CTCTAGAGCATATGTCAT-A
*
51008805 GA-AGGATTTAGCCTGGACTGGTAATCC
1 GATAGGATTTAGCCTGGACAGGTAATCC
51008832 TATTGTACAC
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
56 5 0.07
57 40 0.55
58 28 0.38
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (57 bp):
GATAGGATTTAGCCTGGACAGGTAATCCGATATAAGTCCTCTAGAGCATATGTCATA
Found at i:51009826 original size:19 final size:19
Alignment explanation
Indices: 51009802--51009840 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
51009792 ATTAAATGAC
51009802 TATGCTTATAAAAAGTAAG
1 TATGCTTATAAAAAGTAAG
51009821 TATGCTTATAAAAAGTAAG
1 TATGCTTATAAAAAGTAAG
51009840 T
1 T
51009841 TTAAAAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.33
Consensus pattern (19 bp):
TATGCTTATAAAAAGTAAG
Found at i:51011716 original size:17 final size:17
Alignment explanation
Indices: 51011676--51011718 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
51011666 AACCCTTTTG
51011676 TTTTTCTTTCTTTCTACT
1 TTTTTC-TTCTTTCTACT
*
51011694 TATTTCTTC-TTCTACT
1 TTTTTCTTCTTTCTACT
51011710 CTTTTTCTT
1 -TTTTTCTT
51011719 TAATCTGTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 7 0.32
17 10 0.45
18 5 0.23
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTCTTCTTTCTACT
Found at i:51012249 original size:8 final size:8
Alignment explanation
Indices: 51012236--51012270 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
51012226 ATAAATCGGC
51012236 AAAAGCCG
1 AAAAGCCG
*
51012244 AAAAGCTG
1 AAAAGCCG
*
51012252 AAATGCCG
1 AAAAGCCG
51012260 AAAAGCCG
1 AAAAGCCG
51012268 AAA
1 AAA
51012271 GTTGGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.51, C:0.20, G:0.23, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:51012536 original size:29 final size:29
Alignment explanation
Indices: 51012482--51012605 Score: 108
Period size: 29 Copynumber: 4.3 Consensus size: 29
51012472 GTGAGCATGA
* * *
51012482 ATAT-AATATGATTTGGACCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* *
51012510 ATATGAATGTGAATTGGGTCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* * * * * *
51012539 ATAAGAATATGAACTAGGCCAAATAGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* *
51012568 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
*
51012596 ATATGCATAT
1 ATATGAATAT
51012606 ATGTAGGGGT
Statistics
Matches: 71, Mismatches: 24, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
28 23 0.32
29 48 0.68
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAGTGGGCC
Found at i:51021727 original size:17 final size:18
Alignment explanation
Indices: 51021694--51021727 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51021684 ATAGGTTAAT
*
51021694 TTGTAGTGGCCAAATAAA
1 TTGTAGTGGCAAAATAAA
51021712 TTGTAGT-GCAAAATAA
1 TTGTAGTGGCAAAATAA
51021728 GTGGATTTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (18 bp):
TTGTAGTGGCAAAATAAA
Found at i:51028521 original size:56 final size:56
Alignment explanation
Indices: 51028426--51028532 Score: 137
Period size: 56 Copynumber: 1.9 Consensus size: 56
51028416 CATGGCATCG
** *
51028426 ATATATGTGTGCAAGTAAGACCATGTTTTATACGTTGGCATCGATATGTGACTCTA
1 ATATATGTGTGCAAGTAAGACCATGTTGGATACGTTGGCACCGATATGTGACTCTA
* *
51028482 ATATATGTGTGCGAGTAAGACCCTGTATGGGATA-G-TGGCACCGATATGTGA
1 ATATATGTGTGCAAGTAAGACCATGT-T-GGATACGTTGGCACCGATATGTGA
51028533 TTACATGCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
56 39 0.89
57 2 0.05
58 3 0.07
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (56 bp):
ATATATGTGTGCAAGTAAGACCATGTTGGATACGTTGGCACCGATATGTGACTCTA
Found at i:51032735 original size:14 final size:13
Alignment explanation
Indices: 51032697--51032738 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
51032687 TTTTTCTATT
*
51032697 TTATTTATGTTAA
1 TTATTTATTTTAA
51032710 TTATTTATTTTAA
1 TTATTTATTTTAA
51032723 TTCATTT-TCTTTAA
1 TT-ATTTAT-TTTAA
51032737 TT
1 TT
51032739 TTTTCATCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (13 bp):
TTATTTATTTTAA
Found at i:51043309 original size:68 final size:68
Alignment explanation
Indices: 51043161--51043316 Score: 156
Period size: 68 Copynumber: 2.2 Consensus size: 68
51043151 AGCTGATTTG
* * * * **
51043161 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGTGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGTGACCTAGCTACACA
*
51043226 TATC
65 TATA
*
51043230 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGTGACCTAGCTAC-
51043292 ACATAGTA
62 ACATA-TA
*
51043300 TCTCGTAGCTTTCTTGT
1 TCTCGTAGCTCTCTTGT
51043317 ACACATGATG
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
68 35 0.48
69 6 0.08
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGTGACCTAGCTACACAT
ATA
Found at i:51045592 original size:28 final size:27
Alignment explanation
Indices: 51045560--51045643 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
51045550 AGTTTCGATC
51045560 ACGTGTGTAGTACTAAGTACAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
* * *
51045588 ACGTGTATCAG-A-T-GGTTAGG-T-C-
1 ACGTGTGT-AGTACTAAGTCAGGCTACT
51045610 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
51045638 ACGTGT
1 ACGTGT
51045644 ACCAGATTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTCAGGCTACT
Found at i:51045625 original size:50 final size:50
Alignment explanation
Indices: 51045453--51045837 Score: 378
Period size: 50 Copynumber: 7.7 Consensus size: 50
51045443 TAAGACAGTT
* * *
51045453 TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
* * * * * *
51045503 TTAGGTCGCATGT-TACTACTAAGTGCAGGCTACTATGCGTACCCGATAGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GG
* * * * *
51045553 TTCGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
* *
51045603 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
* ** * * * * **
51045653 ATAGGTCGTATGTGTAGTACTAAGTGCATGCTACTATGCGTACCAGTTAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GG
* * * * *
51045704 TTCA-ATCACGTGTGTAGTACTAAGTGCGGGCTACTACATGTATCAGATGG
1 TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
* * * *
51045754 ATAAGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
* * * * *
51045804 ATAGGTCGCATCTATAGTACTATGTGCAGGCTAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTAC
51045838 AATGCGTACC
Statistics
Matches: 270, Mismatches: 60, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
49 29 0.11
50 178 0.66
51 62 0.23
52 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG
Found at i:51045738 original size:151 final size:150
Alignment explanation
Indices: 51045453--51045850 Score: 589
Period size: 151 Copynumber: 2.6 Consensus size: 150
51045443 TAAGACAGTT
* * *
51045453 TTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGTTAGGTCGCATGTTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTTA
* * ** *
51045518 CTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACGTGTGTAGTACTAAGTACAGG
66 GTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCAATCACGTGTGTAGTACTAAGTACAGG
*
51045583 CTACTACGTGTATCAGATGG
131 CTACTACATGTATCAGATGG
* *
51045603 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGTATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGT-T
* * * *
51045668 AGTACTAAGTGCATGCTACTATGCGTACCAGTTAACTTCAATCACGTGTGTAGTACTAAGTGCGG
65 AGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCAATCACGTGTGTAGTACTAAGTACAG
51045733 GCTACTACATGTATCAGATGG
130 GCTACTACATGTATCAGATGG
* * * *
51045754 ATAAGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATCTAT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGT-T
* *
51045819 AGTACTATGTGCAGGCTACAATGCGTACCAGA
65 AGTACTAAGTGCAGGCTACTATGCGTACCAGA
51045851 GAGCTTTGGT
Statistics
Matches: 221, Mismatches: 26, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
150 58 0.26
151 163 0.74
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (150 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTTA
GTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCAATCACGTGTGTAGTACTAAGTACAGG
CTACTACATGTATCAGATGG
Found at i:51045797 original size:101 final size:100
Alignment explanation
Indices: 51045457--51045801 Score: 343
Period size: 101 Copynumber: 3.4 Consensus size: 100
51045447 ACAGTTTTAG
* * ** * * * *
51045457 GTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGTTAGGTCGCATGT-TACTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATACTTAGATCACGTGTGTAGTA
*** * * * **
51045521 CTAAGTGCAGGCTACTATGCGTACCCGATAGTTTC
66 CTAAGTGCAGGCTACTACATGTACCAGATGGATAA
* * * ** *
51045556 GATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGT
1 G-TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATACTTAGATCACGTGTGTAGT
* * *
51045621 ACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
65 ACTAAGTGCAGGCTACTACATGTACCAGATGGATAA
** * * * *
51045657 GTCGTATGTGTAGTACTAAGTGCATGCTACTATGCGTACCAGTTAACTTCA-ATCACGTGTGTAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-ACTT-AGATCACGTGTGTAG
* *
51045721 TACTAAGTGCGGGCTACTACATGTATCAGATGGATAA
64 TACTAAGTGCAGGCTACTACATGTACCAGATGGATAA
*
51045758 GTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAT
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
51045802 TGATAGGTCG
Statistics
Matches: 202, Mismatches: 40, Indels: 6
0.81 0.16 0.02
Matches are distributed among these distances:
99 1 0.00
100 84 0.42
101 116 0.57
102 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATACTTAGATCACGTGTGTAGTA
CTAAGTGCAGGCTACTACATGTACCAGATGGATAA
Found at i:51047819 original size:24 final size:25
Alignment explanation
Indices: 51047783--51047829 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
51047773 TACATAAGCC
*
51047783 AGAGGTTCATTGATCAGAAACAAAA
1 AGAGGTTCATTGAGCAGAAACAAAA
* *
51047808 AGAGTTTC-TTGAGCTGAAACAA
1 AGAGGTTCATTGAGCAGAAACAA
51047830 GGTAAAATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (25 bp):
AGAGGTTCATTGAGCAGAAACAAAA
Found at i:51052102 original size:24 final size:24
Alignment explanation
Indices: 51052075--51052305 Score: 381
Period size: 24 Copynumber: 9.6 Consensus size: 24
51052065 CTTATTATGT
* * *
51052075 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
51052099 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
51052123 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
51052147 TCACACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
51052171 TCGCACACATAGTGCCATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
51052195 TCGCACACATAGTGCCATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
51052219 TCGCACACATAGTGCCATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
51052243 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
51052267 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
51052291 TCGCACACATAGTGC
1 TCGCACACATAGTGC
51052306 ATTTGAGATA
Statistics
Matches: 199, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 199 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.19
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:51059566 original size:24 final size:24
Alignment explanation
Indices: 51059250--51059564 Score: 558
Period size: 24 Copynumber: 13.1 Consensus size: 24
51059240 GCAAAGACCA
51059250 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51059274 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
51059298 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
51059322 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51059346 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
51059370 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
51059394 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51059418 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
51059442 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
51059466 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
51059490 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51059514 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
51059538 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
51059562 TAT
1 TAT
51059565 AGTCACATTC
Statistics
Matches: 283, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 283 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:51067645 original size:24 final size:24
Alignment explanation
Indices: 51067329--51067643 Score: 558
Period size: 24 Copynumber: 13.1 Consensus size: 24
51067319 GCAAAGACCA
51067329 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51067353 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
51067377 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
51067401 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51067425 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
51067449 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
51067473 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51067497 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
51067521 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
51067545 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
51067569 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51067593 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
51067617 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
51067641 TAT
1 TAT
51067644 AGTCACATTC
Statistics
Matches: 283, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 283 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:51071381 original size:24 final size:24
Alignment explanation
Indices: 51071354--51071560 Score: 360
Period size: 24 Copynumber: 8.6 Consensus size: 24
51071344 CTTATTATGT
* * *
51071354 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
51071378 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
51071402 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
51071426 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
51071450 TCGCACACATAGTGCCATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
51071474 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
51071498 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
51071522 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
51071546 TCGCACACATAGTGC
1 TCGCACACATAGTGC
51071561 ATTTGAGATA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:51074331 original size:50 final size:50
Alignment explanation
Indices: 51074266--51074699 Score: 331
Period size: 50 Copynumber: 8.6 Consensus size: 50
51074256 TGGTACGCAC
* **
51074266 AGTAGCCTGCACTTAGTACTATACATGCAACCTATCAATCTGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGT
* * * * * *
51074316 AGTATCCTGCACTTAGTATTACACACGTGACTTATCCATCTGATACACGT
1 AGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGT
* ** ** * ** *
51074366 AGTAGCCCGCACTTAGTACTACACACATGATCGAAGTTAA-C-GAGTATGCAT
1 AGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTG-GTACACGT
* *
51074417 AGTAGCTTGCACTTAGTACTACACATGTGACCTATCAATCCGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGT
* * * * * *
51074467 AGTAGCCTGCACTTAAGTACTACACACGTGACTTGA-CCATCTGATCCATGT
1 AGTAGCCTGCACTT-AGTACTACACATGTGACCT-ATCAATCTGGTACACGT
** ** * * ** *
51074518 AGTAGCCTGCACTTAGTACTACACACCTGATCGAAACTAT-TGGCTATGCAT
1 AGTAGCCTGCACTTAGTACTACACATGTGA-CCTATCAATCTGG-TACACGT
* * *
51074569 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACATGT
1 AGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGT
** * * *
51074619 AGTAGCCTGCACTTAGTACTACACACATGACCTA--AAACTGTCTTAAACACAT
1 AGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG--GT--ACACGT
*
51074671 AGTAGCCTGCACATAGTACTACACATGTG
1 AGTAGCCTGCACTTAGTACTACACATGTG
51074700 TTCTCACAAC
Statistics
Matches: 300, Mismatches: 69, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
48 5 0.02
49 3 0.01
50 148 0.49
51 111 0.37
52 33 0.11
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
AGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGT
Found at i:51074521 original size:101 final size:100
Alignment explanation
Indices: 51074266--51074695 Score: 325
Period size: 101 Copynumber: 4.2 Consensus size: 100
51074256 TGGTACGCAC
* * * * * * *
51074266 AGTAGCCTGCACTTAGTACTATACATGCAACCTATCAATCTGGTACACGTAGTATCCTGCACTTA
1 AGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACATGTAGTAGCCTGCACTTA
* * * * * * * *
51074331 GTATTACACACGTGACTTATCCATCTGATACACGT
66 GTACTACACACATGACCTAACAATCGGCTACACAT
* ** * * * *
51074366 AGTAGCCCGCACTTAGTACTACACACATGATCGAAGTTAA-C-GAGT--ATGCATAGTAGCTTGC
1 AGTAGCCTGCACTTAGTACTACACACGCGACCTAA--CAATCTGA-TACATG--TAGTAGCCTGC
** * *
51074427 ACTTAGTACTACACATGTGACCTATCAATCCGG-TACACGT
61 ACTTAGTACTACACACATGACCTAACAAT-CGGCTACACAT
* * * * *
51074467 AGTAGCCTGCACTTAAGTACTACACACGTGACTTGACCATCTGATCCATGTAGTAGCCTGCACTT
1 AGTAGCCTGCACTT-AGTACTACACACGCGACCTAACAATCTGATACATGTAGTAGCCTGCACTT
* ** * * **
51074532 AGTACTACACACCTGATCGAAACTATTGGCTATGCAT
65 AGTACTACACACATGA-CCTAACAATCGGCTACACAT
* *
51074569 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCACTTA
1 AGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACATGTAGTAGCCTGCACTTA
*
51074634 GTACTACACACATGACCTAA-AA-CTGTCTTAAACACAT
66 GTACTACACACATGACCTAACAATC-GGC-T--ACACAT
*
51074671 AGTAGCCTGCACATAGTACTACACA
1 AGTAGCCTGCACTTAGTACTACACA
51074696 TGTGTTCTCA
Statistics
Matches: 259, Mismatches: 54, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
99 5 0.02
100 32 0.12
101 146 0.56
102 73 0.28
103 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (100 bp):
AGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACATGTAGTAGCCTGCACTTA
GTACTACACACATGACCTAACAATCGGCTACACAT
Found at i:51074566 original size:152 final size:151
Alignment explanation
Indices: 51074266--51074649 Score: 565
Period size: 152 Copynumber: 2.5 Consensus size: 151
51074256 TGGTACGCAC
* * *
51074266 AGTAGCCTGCACTTAGTACTATACATGCAACCTATCAATCTGGTACACGTAGTATCCTGCACTTA
1 AGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTA
*
51074331 GTATTACACACGTGACTTATCCATCTGATACACGTAGTAGCCCGCACTTAGTACTACACACATGA
66 GTACTACACACGTGACTTATCCATCTGATACACGTAGTAGCCCGCACTTAGTACTACACACATGA
**
51074396 TCGAAGTTAACGAGTATGCAT
131 TCGAAACTAACGAGTATGCAT
* * *
51074417 AGTAGCTTGCACTTAGTACTACACATGTGACCTATCAATCCGGTACACGTAGTAGCCTGCACTTA
1 AGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT-
* * * *
51074482 AGTACTACACACGTGACTTGA-CCATCTGATCCATGTAGTAGCCTGCACTTAGTACTACACACCT
65 AGTACTACACACGTGACTT-ATCCATCTGATACACGTAGTAGCCCGCACTTAGTACTACACACAT
**
51074546 GATCGAAACTATTG-GCTATGCAT
129 GATCGAAACTAACGAG-TATGCAT
* *
51074569 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCACTTA
1 AGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTA
*
51074634 GTACTACACACATGAC
66 GTACTACACACGTGAC
51074650 CTAAAACTGT
Statistics
Matches: 209, Mismatches: 21, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
151 75 0.36
152 133 0.64
153 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (151 bp):
AGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACTTATCCATCTGATACACGTAGTAGCCCGCACTTAGTACTACACACATGA
TCGAAACTAACGAGTATGCAT
Found at i:51082389 original size:38 final size:39
Alignment explanation
Indices: 51082337--51082479 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
51082327 GAATGTTCGA
51082337 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
51082376 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
51082414 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
51082453 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
51082480 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:51082425 original size:77 final size:79
Alignment explanation
Indices: 51082338--51082519 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
51082328 AATGTTCGAG
51082338 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
51082401 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
51082415 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
51082480 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
51082494 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
51082520 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:51092513 original size:86 final size:85
Alignment explanation
Indices: 51092417--51092576 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 85
51092407 ATATGTGTTA
*** * *
51092417 TCGTGTAAGACCATGTCTGGGA-CGTCGGCATCAAT-TTGTGATTTACATGTAAGACCATGTCTG
1 TCGTGTAAGACCATGTCTAAAATAGT-GGCATCAATATT-TGA-TTACATGTAAGACCACGTCTG
51092480 GGACATTGGCATCGTATATGATT
63 GGACATTGGCATCGTATATGATT
* *
51092503 TCGTGTAAGACCCTGTCTAAAATAGTGGCATCGATATTTGATTACATGTAAGACCACGTCTGGGA
1 TCGTGTAAGACCATGTCTAAAATAGTGGCATCAATATTTGATTACATGTAAGACCACGTCTGGGA
*
51092568 CGTTGGCAT
66 CATTGGCAT
51092577 TGTACGAGCT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 31 0.48
86 29 0.45
87 4 0.06
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (85 bp):
TCGTGTAAGACCATGTCTAAAATAGTGGCATCAATATTTGATTACATGTAAGACCACGTCTGGGA
CATTGGCATCGTATATGATT
Found at i:51092575 original size:43 final size:43
Alignment explanation
Indices: 51092420--51092576 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
51092410 TGTGTTATCG
* * *
51092420 TGTAAGACCATGTCTGGGACGTCGGCATCAAT-TTGTGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTACA
* * * * *
51092464 TGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
*** *
51092506 TGTAAGACC-CTGTCTAAAATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATTTGATTACA
51092549 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
51092577 TGTACGAGCT
Statistics
Matches: 88, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 26 0.30
43 33 0.38
44 29 0.33
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:51105223 original size:29 final size:28
Alignment explanation
Indices: 51105135--51105236 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 28
51105125 TACTCAATCA
**
51105135 CGCACACTTAGTGCCATGTGATTCAAGC-
1 CGCACACTTAGTGCCAT-ACATTCAAGCT
* * * *
51105163 CTGCACACATAGTGCCATATAGTCCAAACT
1 C-GCACACTTAGTGCCATACA-TTCAAGCT
51105193 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
51105222 CGCACA-TCAGTGCCA
1 CGCACACTTAGTGCCA
51105237 ATCTCGTCCC
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
28 11 0.18
29 48 0.80
30 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:51122007 original size:93 final size:93
Alignment explanation
Indices: 51121895--51122066 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51121885 CGCCCATAAG
* *
51121895 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51121960 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
51121988 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51122053 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51122067 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:51122063 original size:46 final size:46
Alignment explanation
Indices: 51121888--51122063 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51121878 TGTAACCCGC
* * *
51121888 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
51121934 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
51121984 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51122027 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51122064 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51134488 original size:16 final size:16
Alignment explanation
Indices: 51134469--51134499 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51134459 CTTATTCACT
51134469 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
51134485 TACTTACTTACTTAA
1 TACTCACTTACTTAA
51134500 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:51134505 original size:20 final size:20
Alignment explanation
Indices: 51134466--51134505 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
51134456 AAACTTATTC
* *
51134466 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
51134486 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
51134506 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:51136229 original size:55 final size:53
Alignment explanation
Indices: 51136006--51136259 Score: 213
Period size: 55 Copynumber: 4.8 Consensus size: 53
51135996 ACACGGGTAG
* * *
51136006 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT--TT-GAAA
1 CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCTTAGAAA
*
51136055 CTTACC-ATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTG-CTTA-GAAA
* * * * * *
51136108 CTCACCAA-TGTCATG-CTTGGCGTGGTCTTACATGGTATCTTTTCCTTATAGAAA
1 CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATC-CTTGC-T-TAGAAA
* * * *
51136162 CTTATCAA-TGCCATGTCTTGACATGGTCTTACATGATATCTTTGCATTAGAATC
1 CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGC-TTAGAA-A
* * *
51136216 CTTACCAATTGCCATGCCTTGGCATGGT-TTGACGTGGTATCCTT
1 CTTACCAATTGCCATGTCTTGACATGGTCTT-ACATGGTATCCTT
51136260 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 26, Indels: 22
0.77 0.12 0.10
Matches are distributed among these distances:
49 39 0.24
52 24 0.15
53 22 0.13
54 32 0.19
55 48 0.29
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.37
Consensus pattern (53 bp):
CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCTTAGAAA
Found at i:51136631 original size:30 final size:30
Alignment explanation
Indices: 51136595--51136653 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
51136585 TCCTTGACTC
*
51136595 AAACTTTGGA-AAATTTACATTTTTGCCCCT
1 AAACTTT-GACAAATTTACACTTTTGCCCCT
* *
51136625 AAACTTTTACATATTTACACTTTTGCCCC
1 AAACTTTGACAAATTTACACTTTTGCCCC
51136654 AAGACTCAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTGACAAATTTACACTTTTGCCCCT
Found at i:51147398 original size:40 final size:40
Alignment explanation
Indices: 51147353--51147519 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
51147343 CGGAATATAA
51147353 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
51147393 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
51147433 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
51147473 CCGGATATAATTTCCAGCATAATTGTC-TCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
51147512 CCGGATAT
1 CCGGATAT
51147520 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 19 0.18
40 87 0.82
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51152069 original size:93 final size:93
Alignment explanation
Indices: 51151957--51152128 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51151947 CGCCCATAAG
* *
51151957 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51152022 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
51152050 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51152115 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51152129 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Done.