Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 164 of 433
Found at i:51152125 original size:46 final size:46
Alignment explanation
Indices: 51151950--51152125 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51151940 TGTAACCCGC
* * *
51151950 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
51151996 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
51152046 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51152089 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51152126 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51155113 original size:28 final size:28
Alignment explanation
Indices: 51155048--51155148 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
51155038 ATAGTGAATC
*
51155048 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
51155077 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51155105 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
51155135 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51155149 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51163070 original size:28 final size:28
Alignment explanation
Indices: 51163005--51163105 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
51162995 ATAGTGAATC
*
51163005 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
51163034 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51163062 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
51163092 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51163106 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51165658 original size:29 final size:29
Alignment explanation
Indices: 51165619--51165706 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
51165609 CAAAGATAAC
*
51165619 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
51165648 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
51165677 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
51165707 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:51165677 original size:15 final size:15
Alignment explanation
Indices: 51165619--51165697 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
51165609 CAAAGATAAC
*
51165619 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
51165633 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
51165648 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
51165662 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
51165677 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
51165692 AAGAAA
1 AAGAAA
51165698 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:51165706 original size:15 final size:15
Alignment explanation
Indices: 51165630--51165706 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
51165620 AGAAAACCGA
51165630 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
51165645 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
51165659 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
51165673 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
51165689 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51165704 ATA
1 ATA
51165707 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51168710 original size:46 final size:46
Alignment explanation
Indices: 51168643--51168817 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
51168633 TGTAACCCGC
*
51168643 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
51168689 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
51168739 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
51168782 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
51168818 CTCAACCATC
Statistics
Matches: 111, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:51171978 original size:46 final size:46
Alignment explanation
Indices: 51171926--51172064 Score: 149
Period size: 46 Copynumber: 3.0 Consensus size: 46
51171916 TATTTAGGCA
*
51171926 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
51171972 TCCGAACTCGTTGAGTTGAGTGCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
51172019 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
51172065 CCTGAGTTCA
Statistics
Matches: 73, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
43 4 0.05
45 3 0.04
46 29 0.40
47 29 0.40
48 3 0.04
50 5 0.07
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:51173647 original size:40 final size:39
Alignment explanation
Indices: 51173602--51173785 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
51173592 CTCGCACAAG
* *
51173602 GCCTTCAGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTC-GGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
51173642 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCGCAAAT
1 GCCTTC-GGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
51173682 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTC-GGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
51173722 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGG-TCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
51173762 GCCTTCGGAACTTAGCCCAGATAT
1 GCCTTCGG-TCTTAGCCCGGATAT
51173786 CATTCGAATA
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 120 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
GCCTTCGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:51188548 original size:31 final size:31
Alignment explanation
Indices: 51188510--51188569 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
51188500 TTCATATTTC
*
51188510 ATATTTCATAACACTGGGCCGAAGCCTTTTA
1 ATATTTCATAACACTAGGCCGAAGCCTTTTA
**
51188541 ATATTTCATATTACTAGGCCGAAGCCTTT
1 ATATTTCATAACACTAGGCCGAAGCCTTT
51188570 ACTGTAAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (31 bp):
ATATTTCATAACACTAGGCCGAAGCCTTTTA
Found at i:51188814 original size:24 final size:24
Alignment explanation
Indices: 51188763--51188880 Score: 161
Period size: 23 Copynumber: 5.0 Consensus size: 24
51188753 ACTTTATCAT
*
51188763 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
51188788 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
51188812 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
51188835 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
51188858 ATAACTAGGGCGTAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
51188881 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 44 0.51
24 30 0.35
25 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:51188955 original size:20 final size:20
Alignment explanation
Indices: 51188930--51188996 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
51188920 TTATGAATAC
51188930 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
51188950 ATCATGTGTATAGCATACAT
1 ATCATGTGCATATCATACAT
*
51188970 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
51188990 ACCATGT
1 ATCATGT
51188997 TTACTAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:51190865 original size:13 final size:13
Alignment explanation
Indices: 51190847--51190871 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51190837 TATATTTTAT
51190847 GTGTGAAAATTTC
1 GTGTGAAAATTTC
51190860 GTGTGAAAATTT
1 GTGTGAAAATTT
51190872 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:51191989 original size:44 final size:43
Alignment explanation
Indices: 51191927--51192043 Score: 155
Period size: 44 Copynumber: 2.7 Consensus size: 43
51191917 AAAAGTCCCA
* * *
51191927 TTGTGATTTCGTGTAAGACCACGTCTAGGACATTGGCATCGAT
1 TTGTGATTTCGTGTAAGACCACGTCTAGGAAAGTGGCACCGAT
51191970 TTGTGATTTGCGTGTAAGACC-CTGTCTAGGAAAGTGGCACCGAT
1 TTGTGATTT-CGTGTAAGACCAC-GTCTAGGAAAGTGGCACCGAT
* * *
51192014 ATGTGATTACATGTAAGACCACGTCTAGGA
1 TTGTGATTTCGTGTAAGACCACGTCTAGGA
51192044 TGTTGGCGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
43 28 0.43
44 37 0.57
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
TTGTGATTTCGTGTAAGACCACGTCTAGGAAAGTGGCACCGAT
Found at i:51199680 original size:27 final size:28
Alignment explanation
Indices: 51199618--51199680 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
51199608 AAAGCATGAC
* *
51199618 TATGTATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCC-AACGGGCCA
*
51199647 TACGAATGTGATTTGGGCC-ACGGGCCA
1 TATGAATGTGATTTGGGCCAACGGGCCA
51199674 TATGAAT
1 TATGAAT
51199681 CAGACTGGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 13 0.43
29 17 0.57
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (28 bp):
TATGAATGTGATTTGGGCCAACGGGCCA
Found at i:51202289 original size:12 final size:12
Alignment explanation
Indices: 51202272--51202298 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51202262 GTCTCAACTC
51202272 CTTTCTTTTCTA
1 CTTTCTTTTCTA
51202284 CTTTCTTTTCTA
1 CTTTCTTTTCTA
51202296 CTT
1 CTT
51202299 GGTGCCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.26, G:0.00, T:0.67
Consensus pattern (12 bp):
CTTTCTTTTCTA
Found at i:51203552 original size:23 final size:24
Alignment explanation
Indices: 51203526--51203587 Score: 72
Period size: 27 Copynumber: 2.5 Consensus size: 24
51203516 ATCTGTATTG
*
51203526 AGACTATTATA-TGACTGGTGGAA
1 AGACTATTATACTAACTGGTGGAA
*
51203549 AGACTATTATACCCCTAATTGGTGGAA
1 AGACTATTATA---CTAACTGGTGGAA
51203576 AGACTATTATAC
1 AGACTATTATAC
51203588 CCCTATTGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
23 11 0.33
24 1 0.03
27 21 0.64
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (24 bp):
AGACTATTATACTAACTGGTGGAA
Found at i:51203579 original size:27 final size:26
Alignment explanation
Indices: 51203541--51203597 Score: 105
Period size: 27 Copynumber: 2.2 Consensus size: 26
51203531 ATTATATGAC
51203541 TGGTGGAAAGACTATTATACCCCTAAT
1 TGGTGGAAAGACTATTATACCCCT-AT
51203568 TGGTGGAAAGACTATTATACCCCTAT
1 TGGTGGAAAGACTATTATACCCCTAT
51203594 TGGT
1 TGGT
51203598 AGGTTAATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 6 0.20
27 24 0.80
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (26 bp):
TGGTGGAAAGACTATTATACCCCTAT
Found at i:51203789 original size:27 final size:28
Alignment explanation
Indices: 51203715--51203789 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 28
51203705 TTGGAAAAAG
*
51203715 TACTG-TATTAGTGGCTTTGCCATGTAAT
1 TACTGCTATTAGTGGCTTTGCCACGT-AT
* *
51203743 TATTGCT-CTAGTGGCTTTGCCACGT-T
1 TACTGCTATTAGTGGCTTTGCCACGTAT
*
51203769 TACTGCTATTAGTAGCTTTGC
1 TACTGCTATTAGTGGCTTTGC
51203790 TGTGCTACTG
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
26 7 0.18
27 11 0.28
28 20 0.51
29 1 0.03
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.43
Consensus pattern (28 bp):
TACTGCTATTAGTGGCTTTGCCACGTAT
Found at i:51210983 original size:55 final size:55
Alignment explanation
Indices: 51210865--51210987 Score: 165
Period size: 55 Copynumber: 2.2 Consensus size: 55
51210855 TTTTAGTCTA
*
51210865 TGTTGTACACGGGTAGGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAG
1 TGTTGTACACGGGTAGGCCACACGGGCGTGTGCCATGGCCATGTCTTAAAGTCAG
* * * * * * * *
51210920 TATCGTACACGGGTAGGTCACACGGGTGTGTGCCATGGCTATGTGTTGAAGTTAG
1 TGTTGTACACGGGTAGGCCACACGGGCGTGTGCCATGGCCATGTCTTAAAGTCAG
51210975 TGTTGTACACGGG
1 TGTTGTACACGGG
51210988 CTAAGGGCAT
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.19, C:0.20, G:0.35, T:0.27
Consensus pattern (55 bp):
TGTTGTACACGGGTAGGCCACACGGGCGTGTGCCATGGCCATGTCTTAAAGTCAG
Found at i:51218447 original size:49 final size:49
Alignment explanation
Indices: 51218391--51218621 Score: 277
Period size: 49 Copynumber: 4.7 Consensus size: 49
51218381 CTAGTATGCA
* *
51218391 TAGTAGCCTGCACTTAGTACTACACATGTGACTAATTATTC-GATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTAATTA-TCAGATACACG
** *
51218440 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CTAATTATCAGATACACG
* * *
51218490 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGA-A
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CTAA-TTATCAGATAC-ACG
* * * * * *
51218541 TAGGAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTAATTATCAGATACACG
51218590 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
51218622 CTCACAATAG
Statistics
Matches: 157, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
48 1 0.01
49 71 0.45
50 49 0.31
51 35 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTAATTATCAGATACACG
Found at i:51218609 original size:100 final size:99
Alignment explanation
Indices: 51218391--51218621 Score: 306
Period size: 100 Copynumber: 2.3 Consensus size: 99
51218381 CTAGTATGCA
* * * *
51218391 TAGTAGCCTGCACTTAGTACTACACATGTGACTAATTATTCGATACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATTCGATACATATAGGAGCCTGCACTTA
* *
51218456 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCCGATACACG
*
51218490 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTA-TCAGGTACGA-ATAGGAGCCTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATTC-GATAC-ATATAGGAGCCTGCA
* ** *
51218553 CTTAGTACTACACATGCGACC-AATTATCCGGTACACG
62 CTTAGTACTACACACGCGACCTAACCATCCGATACACG
51218590 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
51218622 CTCACAATAG
Statistics
Matches: 117, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
99 31 0.26
100 48 0.41
101 37 0.32
102 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATTCGATACATATAGGAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCCGATACACG
Found at i:51220564 original size:47 final size:46
Alignment explanation
Indices: 51220494--51220621 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 46
51220484 TCGGATTTCT
* *
51220494 TGAGTGCTAGTGTAACACATGTCTGGGACATGCATCAGC-CACATTA
1 TGAGTGCCAGTGTAACACATGTCTGGGACATGCATCAGCGCACA-GA
* * * * * * *
51220540 TGAGTGCCAGTATAATACCATGTCTAGGACATGGAATCAGCGTAGAGG
1 TGAGTGCCAGTGTAACA-CATGTCTGGGACAT-GCATCAGCGCACAGA
*
51220588 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCA
1 TGAGTGCCAGTGTAACACATGTCTGGGACATGCA
51220622 ACGGCTTCGA
Statistics
Matches: 66, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
46 16 0.24
47 26 0.39
48 22 0.33
49 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
TGAGTGCCAGTGTAACACATGTCTGGGACATGCATCAGCGCACAGA
Found at i:51228612 original size:27 final size:27
Alignment explanation
Indices: 51228581--51228646 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
51228571 ACAATCATAC
* *
51228581 ATCACATAGGGGCGTAACAATTATTTT
1 ATCACATAGGGGCATAACAATCATTTT
* *
51228608 ATCACATAGGGGCATAATAGTCATTTT
1 ATCACATAGGGGCATAACAATCATTTT
51228635 ATCA-ATTAGGGG
1 ATCACA-TAGGGG
51228647 GTCTAGGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.03
27 33 0.97
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (27 bp):
ATCACATAGGGGCATAACAATCATTTT
Found at i:51231544 original size:33 final size:35
Alignment explanation
Indices: 51231485--51231557 Score: 84
Period size: 33 Copynumber: 2.2 Consensus size: 35
51231475 ATCTATACTG
*
51231485 TACTGTTACTGAGATGGGCTCAGG-CCCAACT-AA
1 TACTGATACTGAGATGGGCTCAGGCCCCAACTGAA
51231518 TACTGATACTGTA-ATGGGCT-AGGGCCCCAACTGAA
1 TACTGATACTG-AGATGGGCTCA-GGCCCCAACTGAA
51231553 -ACTGA
1 TACTGA
51231558 ACCGTTACTG
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
32 1 0.03
33 19 0.54
34 13 0.37
35 2 0.06
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (35 bp):
TACTGATACTGAGATGGGCTCAGGCCCCAACTGAA
Found at i:51241530 original size:36 final size:36
Alignment explanation
Indices: 51241490--51241564 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
51241480 GGTCAATGAG
51241490 AATGTGTATTAACTATTGACAGCTCAATAAAGTTAC
1 AATGTGTATTAACTATTGACAGCTCAATAAAGTTAC
51241526 AATGTGTATTAACTATTGACAGCTCAATAAAGTTAC
1 AATGTGTATTAACTATTGACAGCTCAATAAAGTTAC
51241562 AAT
1 AAT
51241565 AAAGAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (36 bp):
AATGTGTATTAACTATTGACAGCTCAATAAAGTTAC
Found at i:51246813 original size:48 final size:48
Alignment explanation
Indices: 51246742--51247559 Score: 1357
Period size: 48 Copynumber: 17.0 Consensus size: 48
51246732 CAAGATAAAT
* * * *
51246742 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
51246790 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
51246838 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
51246886 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
51246934 ATATGTATATGTGGTAAATCCAAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
51246982 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
51247030 ATATGTATATGTGGTAAAGCCGAATGGCCAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
51247078 TTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
51247126 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
51247174 ATATGTAGATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
51247222 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
51247270 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
51247318 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
51247366 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
51247414 ATATATATATGTGGTAAAGCCAAATGGCTACTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
**
51247462 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * * *
51247510 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
51247558 AT
1 AT
51247560 GTGTGTATAT
Statistics
Matches: 730, Mismatches: 40, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 730 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:51247754 original size:37 final size:37
Alignment explanation
Indices: 51247704--51247801 Score: 151
Period size: 37 Copynumber: 2.6 Consensus size: 37
51247694 TATATTCCAT
*
51247704 GTAAGACCCGATGACTACATGTGGAGATTATGTCCGA
1 GTAAGACCCGATGACTACGTGTGGAGATTATGTCCGA
* * *
51247741 GTAAGACCCGATGACTACGTGTTGAGATTTTGTCCGG
1 GTAAGACCCGATGACTACGTGTGGAGATTATGTCCGA
*
51247778 GTAAGACCCGATAACTACGTGTGG
1 GTAAGACCCGATGACTACGTGTGG
51247802 GGACTATTCG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
GTAAGACCCGATGACTACGTGTGGAGATTATGTCCGA
Found at i:51254941 original size:27 final size:27
Alignment explanation
Indices: 51254887--51255018 Score: 149
Period size: 27 Copynumber: 4.9 Consensus size: 27
51254877 CAAATCAGTA
* * * *
51254887 ATTTTACCTTACAGGGGTATTACAGTC
1 ATTTTACCCTATAGGGGTATTTCGGTC
*
51254914 ATTTTACCCTATAGGGGTATTTTGGTC
1 ATTTTACCCTATAGGGGTATTTCGGTC
* * *
51254941 ATTTTACCCTATGGGGGTATATCGATC
1 ATTTTACCCTATAGGGGTATTTCGGTC
* *
51254968 ATTTTATCCTATTA-GGGTTTTTCGGTC
1 ATTTTACCCTA-TAGGGGTATTTCGGTC
*
51254995 ATTTTACCCTATAGGGGCATTTCG
1 ATTTTACCCTATAGGGGTATTTCG
51255019 ATCCAACATT
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.02
27 83 0.97
28 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTATAGGGGTATTTCGGTC
Found at i:51256189 original size:17 final size:17
Alignment explanation
Indices: 51256167--51256199 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
51256157 AAACTAAAGC
51256167 TCTCCC-CAAAGCTGAAT
1 TCTCCCTCAAA-CTGAAT
51256184 TCTCCCTCAAACTGAA
1 TCTCCCTCAAACTGAA
51256200 ATCAGTGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.24
Consensus pattern (17 bp):
TCTCCCTCAAACTGAAT
Found at i:51256289 original size:12 final size:12
Alignment explanation
Indices: 51256266--51256306 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
51256256 CCTTGATTTC
*
51256266 CTCCTAAAATCT
1 CTCCTCAAATCT
*
51256278 CTCCTCATATCT
1 CTCCTCAAATCT
*
51256290 CTCCTCAAATCC
1 CTCCTCAAATCT
51256302 CTCCT
1 CTCCT
51256307 ACAATCCCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.34
Consensus pattern (12 bp):
CTCCTCAAATCT
Found at i:51256317 original size:24 final size:24
Alignment explanation
Indices: 51256265--51256317 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
51256255 CCCTTGATTT
*
51256265 CCTCCTAAAATCTCTCCTCATATC
1 CCTCCTAAAATCCCTCCTCATATC
* *
51256289 TCTCCTCAAATCCCTCCTACA-ATC
1 CCTCCTAAAATCCCTCCT-CATATC
51256313 CCTCC
1 CCTCC
51256318 AGGACATATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.23, C:0.47, G:0.00, T:0.30
Consensus pattern (24 bp):
CCTCCTAAAATCCCTCCTCATATC
Found at i:51256772 original size:27 final size:27
Alignment explanation
Indices: 51256758--51256939 Score: 231
Period size: 27 Copynumber: 6.7 Consensus size: 27
51256748 CTTACCATAA
* *
51256758 AAGGGCAAAATAGTCATTTTA-CTACAA
1 AAGGGCAAAACAGTCATTTTACCT-CAT
* *
51256785 AAGGACAAAACAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *
51256812 AAGGGCAAAGCAATCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* **
51256839 AAGGGCAAAATAGTCATTTTACCAAAAT
1 AAGGGCAAAACAGTCATTTTACC-TCAT
*
51256867 AAGGGCAAAACAGACATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
51256894 AAGGGCAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *
51256921 AAGGGAAAAATAGTCATTT
1 AAGGGCAAAACAGTCATTT
51256940 ATCAATTTGG
Statistics
Matches: 135, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
27 110 0.81
28 25 0.19
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.25
Consensus pattern (27 bp):
AAGGGCAAAACAGTCATTTTACCTCAT
Found at i:51256900 original size:82 final size:81
Alignment explanation
Indices: 51256758--51256939 Score: 285
Period size: 82 Copynumber: 2.2 Consensus size: 81
51256748 CTTACCATAA
* * *
51256758 AAGGGCAAAATAGTCATTTTACTACAAAAGGACAAAACAATCATTTTACCTCATAAGGGCAAAGC
1 AAGGGCAAAATAGTCATTTTACCAAAAAAGGACAAAACAATCATTTTACCTCATAAGGGCAAAAC
51256823 AATCATTTTACCTCAT
66 AATCATTTTACCTCAT
*
51256839 AAGGGCAAAATAGTCATTTTACCAAAATAAGGGCAAAACAGA-CATTTTACCTCATAAGGGCAAA
1 AAGGGCAAAATAGTCATTTTACCAAAA-AAGGACAAAACA-ATCATTTTACCTCATAAGGGCAAA
*
51256903 ACAGTCATTTTACCTCAT
64 ACAATCATTTTACCTCAT
*
51256921 AAGGGAAAAATAGTCATTT
1 AAGGGCAAAATAGTCATTT
51256940 ATCAATTTGG
Statistics
Matches: 93, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
81 25 0.27
82 67 0.72
83 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.25
Consensus pattern (81 bp):
AAGGGCAAAATAGTCATTTTACCAAAAAAGGACAAAACAATCATTTTACCTCATAAGGGCAAAAC
AATCATTTTACCTCAT
Found at i:51260689 original size:27 final size:27
Alignment explanation
Indices: 51260656--51260827 Score: 220
Period size: 27 Copynumber: 6.4 Consensus size: 27
51260646 ACATAGGGGT
* * *
51260656 AAAATAGTCATCTTACCATAAAAGGGA
1 AAAACAGTCATTTTACCATATAAGGGA
*
51260683 AAAATAGTCATTTTACCATATAAGGGA
1 AAAACAGTCATTTTACCATATAAGGGA
*
51260710 AAAACAGTCATTTTACCATATAAGGGC
1 AAAACAGTCATTTTACCATATAAGGGA
* **
51260737 AAAACAGACATTTTACTTTATAAGGGA
1 AAAACAGTCATTTTACCATATAAGGGA
* *
51260764 AAAACAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCATATAAGGGA
* *
51260791 AAAACAATCATTTTACC-TCATAAGGGC
1 AAAACAGTCATTTTACCAT-ATAAGGGA
51260818 AAAACAGTCA
1 AAAACAGTCA
51260828 ATTATCATTT
Statistics
Matches: 128, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.25
Consensus pattern (27 bp):
AAAACAGTCATTTTACCATATAAGGGA
Found at i:51264119 original size:24 final size:24
Alignment explanation
Indices: 51264029--51264124 Score: 93
Period size: 24 Copynumber: 4.0 Consensus size: 24
51264019 ATAACACACC
* *
51264029 ACATTGTGGCCAAGCCACCCCATA
1 ACATTGTGGCCAAGCCACTCAATA
* * * *
51264053 GCATTGTGGCTAAGCAACTCAGTA
1 ACATTGTGGCCAAGCCACTCAATA
* * * * *
51264077 GCGTTTTGGTCAAGCCACTCAAAA
1 ACATTGTGGCCAAGCCACTCAATA
51264101 ACATTGTGGCCAAGCCACTCAATA
1 ACATTGTGGCCAAGCCACTCAATA
51264125 TTACAGATAA
Statistics
Matches: 54, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (24 bp):
ACATTGTGGCCAAGCCACTCAATA
Found at i:51264172 original size:24 final size:24
Alignment explanation
Indices: 51264140--51264187 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
51264130 GATAAGCTAC
* *
51264140 ACGTTGTGGTCAAGCGACTCAATA
1 ACGTTGTGGCCAAGCCACTCAATA
*
51264164 ACGTTGTGGCCAAGCCATTCAATA
1 ACGTTGTGGCCAAGCCACTCAATA
51264188 TTGCAGTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (24 bp):
ACGTTGTGGCCAAGCCACTCAATA
Found at i:51268033 original size:55 final size:54
Alignment explanation
Indices: 51267925--51268179 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 54
51267915 ATTAGGGTTT
* * *
51267925 AAGGATACCATGTAAGACCATGCCAAGGCATTGCAATTGGTAAGGTT-TCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGC
* * * *
51267980 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC
* * * *
51268035 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATAGGTAAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * *
51268088 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * *
51268137 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
51268180 GTACCCGCAT
Statistics
Matches: 167, Mismatches: 28, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
49 38 0.23
52 6 0.04
53 43 0.26
54 8 0.05
55 68 0.41
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:51268131 original size:108 final size:110
Alignment explanation
Indices: 51267932--51268132 Score: 302
Period size: 108 Copynumber: 1.8 Consensus size: 110
51267922 TTTAAGGATA
* *
51267932 CCATGTAAGACCATGCCAAGGCATTGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATTGCAATAGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
51267997 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
*
51268042 CCATGTAAGACCATGCCAAGGCA-TG-ACATAGGTAA-G-TTCATAAGGCAAGGATACCATGTAA
1 CCATGTAAGACCATGCCAAGGCATTGCA-ATAGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAA
* *
51268103 GACCATGTCGAGACATGGCAATGGTAAGTT
64 GACCATGTCAAGACATGGCAATGATAAGTT
51268133 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
107 3 0.04
108 48 0.58
109 9 0.11
110 23 0.28
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATTGCAATAGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:51268391 original size:16 final size:16
Alignment explanation
Indices: 51268370--51268400 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51268360 ATAAATTTGA
51268370 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
51268386 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
51268401 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:51272169 original size:14 final size:14
Alignment explanation
Indices: 51272150--51272180 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
51272140 TATATCGTTT
51272150 AAAGAGGGTGATTA
1 AAAGAGGGTGATTA
51272164 AAAGAGGGTGATTA
1 AAAGAGGGTGATTA
51272178 AAA
1 AAA
51272181 ACTAAGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.32, T:0.19
Consensus pattern (14 bp):
AAAGAGGGTGATTA
Found at i:51273794 original size:22 final size:22
Alignment explanation
Indices: 51273741--51273785 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
51273731 GAAAATAATC
**
51273741 AAAATTAATCAAAATTTATTAT
1 AAAATTAATTGAAATTTATTAT
51273763 AAAATTAATTGAAATTTATTAT
1 AAAATTAATTGAAATTTATTAT
51273785 A
1 A
51273786 TTAATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
AAAATTAATTGAAATTTATTAT
Found at i:51277430 original size:30 final size:30
Alignment explanation
Indices: 51277372--51277430 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
51277362 GCCTTTTGAA
* * *
51277372 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGACAACCAATTTTT
51277402 AATATTTACAAAAAGA-ACAACCACATTTT
1 AATATTTACAAAAAGAGACAACCA-ATTTT
51277431 GAAAATATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACCAATTTTT
Found at i:51285817 original size:102 final size:102
Alignment explanation
Indices: 51285641--51285845 Score: 349
Period size: 102 Copynumber: 2.0 Consensus size: 102
51285631 CTTTCCTGGG
* *
51285641 TGGTAATCAATCACAAGCTCATAGTCTTTTAGTAATTCTAACCATCCACTTTGTCTCAAATTCAG
1 TGGTAATCAATCACAAGCTCATAGTCTTTTAGTAATTCTAACCATCCACATTGTCTCAAATTCAA
*
51285706 ATCTTTTTGAGTCATCAAGTATTTCAGGCTTTTGTGA
66 ATCTTTTTGAGTCATCAAGTATTTCAAGCTTTTGTGA
* *
51285743 TGGTAATCAATCACAAGCTCGTAGTCTTTTAGTAATTCTAACCATCGACATTGTCTCAAATT-AT
1 TGGTAATCAATCACAAGCTCATAGTCTTTTAGTAATTCTAACCATCCACATTGTCTCAAATTCA-
51285807 AATCTTTTTGAGTCATCAAGTATTTCAAGCTTTTGTGA
65 AATCTTTTTGAGTCATCAAGTATTTCAAGCTTTTGTGA
51285845 T
1 T
51285846 CAGAATAGAC
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
101 1 0.01
102 96 0.99
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (102 bp):
TGGTAATCAATCACAAGCTCATAGTCTTTTAGTAATTCTAACCATCCACATTGTCTCAAATTCAA
ATCTTTTTGAGTCATCAAGTATTTCAAGCTTTTGTGA
Found at i:51298066 original size:21 final size:21
Alignment explanation
Indices: 51298042--51298085 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
51298032 AAATCTATCA
51298042 AAATTAATCAAAATTATTAAT
1 AAATTAATCAAAATTATTAAT
* *
51298063 AAATTAATTAAAATTTTTAAT
1 AAATTAATCAAAATTATTAAT
51298084 AA
1 AA
51298086 TTTTTATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
AAATTAATCAAAATTATTAAT
Found at i:51300430 original size:25 final size:25
Alignment explanation
Indices: 51300378--51300431 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
51300368 TGTTACTGCT
*
51300378 ATTGAAATAGGGGCTAAGGCCCCTA
1 ATTGAAATAGGGGCTAAGGCCCCAA
* *
51300403 ATTGAAATTGAGGGCTTAGG-CCCAA
1 ATTGAAATAG-GGGCTAAGGCCCCAA
51300428 ATTG
1 ATTG
51300432 TGTTTACTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (25 bp):
ATTGAAATAGGGGCTAAGGCCCCAA
Found at i:51305062 original size:40 final size:40
Alignment explanation
Indices: 51304953--51305206 Score: 306
Period size: 40 Copynumber: 6.5 Consensus size: 40
51304943 AAGCCAAGTA
* * * *
51304953 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAATG
* *
51304991 CCTTCGGGACATAG-CCGGATATAATAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * *
51305030 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
51305070 CCTTCGGGACTTAG-CCGGATGTAATAACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
51305108 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * * *
51305148 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAATAACTCGCACAAATG
51305188 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51305207 TTATCATCCG
Statistics
Matches: 191, Mismatches: 18, Indels: 12
0.86 0.08 0.05
Matches are distributed among these distances:
37 1 0.01
38 49 0.26
39 44 0.23
40 97 0.51
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:51305115 original size:78 final size:78
Alignment explanation
Indices: 51304953--51305206 Score: 318
Period size: 78 Copynumber: 3.2 Consensus size: 78
51304943 AAGCCAAGTA
* * * *
51304953 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCGGATATAAT
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAAT
* *
51305016 AACTCGCACCAATG
65 AACTAGCACAAATG
* *
51305030 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATTCCTTCGGGACTTAGCCGGATGTAAT
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCGGATATAAT
51305095 AACT-GCACAAATG
65 AACTAGCACAAATG
* *
51305108 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAG-CCGGATA-TA
* * *
51305172 GTCACTAGCGCAAATG
63 ATAACTAGCACAAATG
51305188 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51305207 TTATCATCCG
Statistics
Matches: 156, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
77 14 0.09
78 73 0.47
79 42 0.27
80 27 0.17
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAATA
ACTAGCACAAATG
Found at i:51305160 original size:118 final size:117
Alignment explanation
Indices: 51304987--51305203 Score: 339
Period size: 118 Copynumber: 1.8 Consensus size: 117
51304977 CTACTCGCTC
*
51304987 AATGCCTTCGGGACATAGCCGGATATAATAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATA
1 AATGCCTTCGGGACATAGCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-A
* *
51305052 -TAGT-AGCTCGCACAAATTCCTTCGGGACTTAGCCGGATGTAATAACTGCACA
65 CTAGTCA-CTAGCACAAATGCCTTCGGGACTTAGCCGGATGTAATAACTGCACA
* *
51305104 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
1 AATGCCTTCGGGACATAG-CCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
*
51305169 CTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCC
65 CTAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
51305204 CGGTTATCAT
Statistics
Matches: 91, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
117 18 0.20
118 72 0.79
119 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (117 bp):
AATGCCTTCGGGACATAGCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAC
TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCGGATGTAATAACTGCACA
Found at i:51313223 original size:40 final size:40
Alignment explanation
Indices: 51313163--51313393 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
51313153 GGATATAGCT
* *
51313163 ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATA
* *
51313202 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATA
* * *
51313242 GCTCGTACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATA
*
51313282 ACTCGCACAAATGTCTTCGGGACTTAGCCCGGA-AGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAATA
* *
51313322 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAATA
* *
51313362 ACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
51313394 TTATCATCCG
Statistics
Matches: 172, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 7 0.04
40 165 0.96
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATA
Found at i:51321827 original size:20 final size:21
Alignment explanation
Indices: 51321778--51321838 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
51321768 GTTAATTTTA
*
51321778 AGGACAAATTAAATTCAGCAGCT
1 AGGACAAATTTAATTC-G-AGCT
51321801 AGGACAAATTTAATTCG-GCT
1 AGGACAAATTTAATTCGAGCT
*
51321821 GGGACAAATTTAATTCGA
1 AGGACAAATTTAATTCGA
51321839 CATATAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 19 0.54
22 1 0.03
23 15 0.43
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (21 bp):
AGGACAAATTTAATTCGAGCT
Found at i:51326564 original size:15 final size:14
Alignment explanation
Indices: 51326540--51326569 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
51326530 CATGGCTATA
51326540 AAACTTTTCACAAG
1 AAACTTTTCACAAG
51326554 AAACATTTTCACAAG
1 AAAC-TTTTCACAAG
51326569 A
1 A
51326570 TTTGTATAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (14 bp):
AAACTTTTCACAAG
Found at i:51328267 original size:14 final size:15
Alignment explanation
Indices: 51328214--51328265 Score: 72
Period size: 15 Copynumber: 3.5 Consensus size: 15
51328204 CTTGTTTTCC
51328214 TTTCTTTTTCTCACT
1 TTTCTTTTTCTCACT
*
51328229 TTTCTTTGTTTTC-C-
1 TTTCTTT-TTCTCACT
51328243 TTTCTTTTTCTCACT
1 TTTCTTTTTCTCACT
51328258 TTTCTTTT
1 TTTCTTTT
51328266 CTTTCTCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 4 0.12
14 8 0.25
15 16 0.50
16 4 0.12
ACGTcount: A:0.04, C:0.23, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTCTTTTTCTCACT
Found at i:51328270 original size:29 final size:29
Alignment explanation
Indices: 51328205--51328264 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
51328195 ATTTGATCAC
51328205 TTGTTTTCCTTTCTTTTTCTCACTTTTCT
1 TTGTTTTCCTTTCTTTTTCTCACTTTTCT
51328234 TTGTTTTCCTTTCTTTTTCTCACTTTTCT
1 TTGTTTTCCTTTCTTTTTCTCACTTTTCT
51328263 TT
1 TT
51328265 TCTTTCTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.03, C:0.23, G:0.03, T:0.70
Consensus pattern (29 bp):
TTGTTTTCCTTTCTTTTTCTCACTTTTCT
Found at i:51328289 original size:26 final size:25
Alignment explanation
Indices: 51328208--51328291 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 25
51328198 TGATCACTTG
51328208 TTTTCCTTTCTTTTTCTCACTTTTC
1 TTTTCCTTTCTTTTTCTCACTTTTC
51328233 TTTGTTTTCCTTTCTTTTTCTCACTTTTC
1 ----TTTTCCTTTCTTTTTCTCACTTTTC
51328262 TTTT-CTTTCTCTTTT-TCACTCTTCTC
1 TTTTCCTTTCT-TTTTCTCACT-TT-TC
51328288 TTTT
1 TTTT
51328292 AACTCACTCT
Statistics
Matches: 52, Mismatches: 0, Indels: 9
0.85 0.00 0.15
Matches are distributed among these distances:
24 11 0.21
25 10 0.19
26 6 0.12
29 25 0.48
ACGTcount: A:0.04, C:0.26, G:0.01, T:0.69
Consensus pattern (25 bp):
TTTTCCTTTCTTTTTCTCACTTTTC
Found at i:51334715 original size:39 final size:39
Alignment explanation
Indices: 51334570--51334830 Score: 294
Period size: 40 Copynumber: 6.6 Consensus size: 39
51334560 AATGATGTCT
* *
51334570 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCC
1 GGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
* * *
51334610 GGACTAAGATCCGAAGGCATTCGTGCGGGTTACTAATTCC
1 GGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATTCC
* ** *
51334650 AGATTAAGATCCGAAGGCATTCGTGCGAGTTACTAATTCC
1 GGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
51334690 GGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
51334729 GGGCTAAGTCCTAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
51334768 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACC
1 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
51334808 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGT-CCGAAGGCATTTG
51334831 AACGAGTAGC
Statistics
Matches: 195, Mismatches: 21, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
39 75 0.38
40 111 0.57
41 9 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:51334721 original size:79 final size:78
Alignment explanation
Indices: 51334573--51334802 Score: 273
Period size: 79 Copynumber: 2.9 Consensus size: 78
51334563 GATGTCTGGG
* * * * *
51334573 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCG
1 CTAAGT-CCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAAG-TCCGAAGGCATTCGTGCG
*
51334637 GGTTACTAATTCCAGA
63 AGTTACTAATTCCAGA
* * *
51334653 TTAAGATCCGAAGGCATTCGTGCGAGTTACTAATTCCGGGCTAAGTCCGAAGGCATTGGTGCGAG
1 CTAAG-TCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTCGTGCGAG
* *
51334718 TTACTAATTCCGGG
65 TTACTAATTCCAGA
* * * *
51334732 CTAAGTCCTAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 CTAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGT-CCGAAGGCATTCGTGCGAG
51334797 TTACTA
65 TTACTA
51334803 TAACCGGGCT
Statistics
Matches: 130, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 36 0.28
79 58 0.45
80 29 0.22
81 7 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
CTAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTCGTGCGAGT
TACTAATTCCAGA
Found at i:51334852 original size:79 final size:78
Alignment explanation
Indices: 51334570--51334863 Score: 245
Period size: 79 Copynumber: 3.7 Consensus size: 78
51334560 AATGATGTCT
** * * * ** *
51334570 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGT
1 GGGCTAAGT-CCGAAGGCATTTGAAC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATTGGT
* *
51334634 GCGGGTTACTAATTCC
63 GCGAGTTACTAATACC
* ** * ** * *
51334650 AGATTAAGATCCGAAGGCATTCGTGCGAGTTACTAATTCCGGGCTAAGTCCGAAGGCATTGGTGC
1 GGGCTAAG-TCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTGGTGC
*
51334715 GAGTTACTAATTCC
65 GAGTTACTAATACC
* ** *
51334729 GGGCTAAGTCCTAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 GGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGT-CCGAAGGCATTGGTGC
51334794 GAGTTACT-ATAACC
65 GAGTTACTAAT-ACC
* * *
51334808 GGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 GGGCTAAGT-CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTT-AAGTCCGAAGG
51334864 TACGTGATTC
Statistics
Matches: 181, Mismatches: 26, Indels: 15
0.82 0.12 0.07
Matches are distributed among these distances:
78 38 0.21
79 80 0.44
80 56 0.31
81 7 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
GGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTGGTGCG
AGTTACTAATACC
Found at i:51342770 original size:40 final size:39
Alignment explanation
Indices: 51342713--51342893 Score: 226
Period size: 39 Copynumber: 4.6 Consensus size: 39
51342703 TCGAATGATG
* * *
51342713 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTACTAAT
* *
51342752 ATCCGGACTAAGATCCGAAGGCATTCGTGTGAGTTACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTACTAAT
*
51342793 TCC-GACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTACTAAT
*
51342832 TCCGGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAA-
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTACTAAT
51342870 TCCGGGCTAAGTCCGAAGGCATTC
1 TCCGGGCTAAGTCCGAAGGCATTC
51342894 TAGGGTTAAG
Statistics
Matches: 128, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 23 0.18
39 64 0.50
40 33 0.26
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTACTAAT
Found at i:51342914 original size:61 final size:63
Alignment explanation
Indices: 51342839--51342955 Score: 193
Period size: 61 Copynumber: 1.9 Consensus size: 63
51342829 AATTCCGGGC
*
51342839 TAAGTCCGAAGGCATTGGTGCGAGTTACTA-ATCCGGGCTAAGT-CCGAAGGCATTCTAGGGT
1 TAAGTCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTCTAGGGT
* *
51342900 TAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TAAGTCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATT
51342956 TGAACGAGTA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
61 29 0.57
62 11 0.22
63 11 0.22
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (63 bp):
TAAGTCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTCTAGGGT
Found at i:51353144 original size:20 final size:20
Alignment explanation
Indices: 51353119--51353156 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51353109 GTTTATTCGC
*
51353119 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
51353139 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
51353157 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:51354797 original size:28 final size:28
Alignment explanation
Indices: 51354765--51354833 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
51354755 GCGTAGATCA
51354765 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
51354793 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
51354821 CGATA-TACCCCTA
1 CGAAATTACCCCTA
51354834 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:51356824 original size:20 final size:20
Alignment explanation
Indices: 51356799--51356836 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51356789 GTTTATTCGC
*
51356799 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
51356819 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
51356837 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:51357450 original size:16 final size:16
Alignment explanation
Indices: 51357429--51357459 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
51357419 TCTTCTTCAA
51357429 ACTATTCATCATACCT
1 ACTATTCATCATACCT
51357445 ACTATTCATCATACC
1 ACTATTCATCATACC
51357460 GCAATTCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (16 bp):
ACTATTCATCATACCT
Found at i:51358355 original size:28 final size:28
Alignment explanation
Indices: 51358323--51358419 Score: 169
Period size: 28 Copynumber: 3.5 Consensus size: 28
51358313 GCGTAGATCA
51358323 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
51358351 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
51358379 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
51358407 CGATA-TACCCCTA
1 CGAAATTACCCCTA
51358420 GGGTTTTAAG
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 8 0.12
28 59 0.88
ACGTcount: A:0.44, C:0.25, G:0.10, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:51360153 original size:13 final size:13
Alignment explanation
Indices: 51360135--51360159 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51360125 ATACCACTAA
51360135 ATGTAACACCCCT
1 ATGTAACACCCCT
51360148 ATGTAACACCCC
1 ATGTAACACCCC
51360160 AAGACATGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.40, G:0.08, T:0.20
Consensus pattern (13 bp):
ATGTAACACCCCT
Found at i:51365723 original size:22 final size:22
Alignment explanation
Indices: 51365689--51365778 Score: 62
Period size: 22 Copynumber: 4.2 Consensus size: 22
51365679 TGCAGGGCTC
*
51365689 ACACGCCCATGTGGTCCAACGG
1 ACACACCCATGTGGTCCAACGG
* *
51365711 ACACACCCGTGT-G-AC-ACTGGG
1 ACACACCCATGTGGTCCAAC--GG
* * *
51365732 ACACGCCTATGTGGTCCAAGGG
1 ACACACCCATGTGGTCCAACGG
* *
51365754 ACACACCCGTGTGGTCCCA-GG
1 ACACACCCATGTGGTCCAACGG
51365775 ACAC
1 ACAC
51365779 GCCGTGCTAG
Statistics
Matches: 51, Mismatches: 12, Indels: 11
0.69 0.16 0.15
Matches are distributed among these distances:
19 2 0.04
20 1 0.02
21 18 0.35
22 28 0.55
23 1 0.02
24 1 0.02
ACGTcount: A:0.23, C:0.34, G:0.28, T:0.14
Consensus pattern (22 bp):
ACACACCCATGTGGTCCAACGG
Found at i:51365777 original size:43 final size:43
Alignment explanation
Indices: 51365689--51365781 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
51365679 TGCAGGGCTC
**
51365689 ACACGCCCATGTGGTCCAACGGACACACCCGTGTGACACTGGG
1 ACACGCCCATGTGGTCCAACGGACACACCCGTGTGACACCAGG
* * *
51365732 ACACGCCTATGTGGTCCAAGGGACACACCCGTGTGGTC-CCAGG
1 ACACGCCCATGTGGTCCAACGGACACACCCGTGT-GACACCAGG
51365775 ACACGCC
1 ACACGCC
51365782 GTGCTAGAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 42 0.95
44 2 0.05
ACGTcount: A:0.23, C:0.35, G:0.28, T:0.14
Consensus pattern (43 bp):
ACACGCCCATGTGGTCCAACGGACACACCCGTGTGACACCAGG
Found at i:51371282 original size:19 final size:19
Alignment explanation
Indices: 51371255--51371292 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
51371245 TTAATTAGCT
51371255 TCCTCGGAGTAATTACTTA
1 TCCTCGGAGTAATTACTTA
* *
51371274 TCCTTGGAGTAATTCCTTA
1 TCCTCGGAGTAATTACTTA
51371293 CTCCCTATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (19 bp):
TCCTCGGAGTAATTACTTA
Found at i:51375987 original size:28 final size:28
Alignment explanation
Indices: 51375950--51376056 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
51375940 GCAATCAAAT
*
51375950 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
51375978 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
51376006 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
51376034 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
51376057 CGAATGATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:51380464 original size:40 final size:40
Alignment explanation
Indices: 51380272--51380479 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
51380262 CAATTGAATG
* * ** * * **
51380272 ATATCCGGGCTAAGTCCCGAAGACATTTATACTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * *
51380312 ATATCTGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* *
51380352 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
51380392 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
51380432 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
51380472 ATATCCGG
1 ATATCCGG
51380480 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.02
40 133 0.95
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:51382145 original size:40 final size:40
Alignment explanation
Indices: 51382086--51382293 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
51382076 CAATTGAATG
* * * *
51382086 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
51382126 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51382166 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51382206 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
51382246 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
51382286 ATATCCGG
1 ATATCCGG
51382294 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:51382224 original size:80 final size:80
Alignment explanation
Indices: 51382087--51382293 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
51382077 AATTGAATGA
* * ** * * *
51382087 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
51382152 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
51382165 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
51382230 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
51382247 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
51382294 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:51390286 original size:40 final size:40
Alignment explanation
Indices: 51390156--51390362 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
51390146 CAATTGAATG
* * ** * **
51390156 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
51390196 ATATCCGGGTTAAGACCC-AAGGCAATT-GTGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
* *
51390235 ACATCCAGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
51390275 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
51390315 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
51390355 ATATCCGG
1 ATATCCGG
51390363 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
39 29 0.21
40 107 0.78
41 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:51395827 original size:40 final size:40
Alignment explanation
Indices: 51395773--51395974 Score: 309
Period size: 40 Copynumber: 5.1 Consensus size: 40
51395763 GGATGATAAT
* * *
51395773 CGGGCTAAGTCCCGAAGGTAGTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
51395813 CGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
51395853 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
51395893 CGGGCTAAGTCCCGAAGGCAATGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
51395933 CGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
51395972 CGG
1 CGG
51395975 TTAACTCTCG
Statistics
Matches: 151, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 2 0.01
39 17 0.11
40 132 0.87
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:51401278 original size:28 final size:28
Alignment explanation
Indices: 51401180--51401277 Score: 160
Period size: 28 Copynumber: 3.5 Consensus size: 28
51401170 GCAATCAAAT
*
51401180 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
51401208 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
51401236 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
*
51401264 ATGACACTTAGTGT
1 ATGGCACTTAGTGT
51401278 GAAAAATATC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.31
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:51404045 original size:39 final size:39
Alignment explanation
Indices: 51403966--51404126 Score: 250
Period size: 39 Copynumber: 4.1 Consensus size: 39
51403956 TGGTAACCCA
* *
51403966 CACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCG
1 CACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCG
* *
51404006 CACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
* *
51404045 CACAATTGCCTTCAGGCTTAGCCCGGATATCACAATTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
*
51404084 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
51404123 CACA
1 CACA
51404127 TTCATTCACA
Statistics
Matches: 112, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.87
40 15 0.13
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (39 bp):
CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
Found at i:51406963 original size:27 final size:28
Alignment explanation
Indices: 51406877--51406976 Score: 139
Period size: 27 Copynumber: 3.5 Consensus size: 28
51406867 CATGAGATTG
* * *
51406877 GCACTAAGTGTGCGAGTTTAAAATTTGTACA
1 GCACTAAGTGTGCGAGTTT--GA-TTATATA
51406908 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51406936 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51406963 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51406977 GACTCACTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
27 25 0.38
28 21 0.32
29 1 0.02
31 19 0.29
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51413662 original size:41 final size:41
Alignment explanation
Indices: 51413617--51413734 Score: 105
Period size: 41 Copynumber: 3.1 Consensus size: 41
51413607 TGAAAGACAA
51413617 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * * *
51413658 ATGTAGATAAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51413688 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51413729 ATGTAG
1 ATGTAG
51413735 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 12, Indels: 22
0.61 0.14 0.25
Matches are distributed among these distances:
30 9 0.17
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 15 0.28
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51413674 original size:71 final size:71
Alignment explanation
Indices: 51413587--51413748 Score: 306
Period size: 71 Copynumber: 2.3 Consensus size: 71
51413577 GATGTATCCT
51413587 ATGTAGACAAGAGAGCTACGTGAAAGACAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
1 ATGTAGACAAGAGAGCTACGTGAAAGACAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
51413652 GACACC
66 GACACC
* *
51413658 ATGTAGATAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
1 ATGTAGACAAGAGAGCTACGTGAAAGACAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
51413723 GACACC
66 GACACC
51413729 ATGTAGACAAGAGAGCTACG
1 ATGTAGACAAGAGAGCTACG
51413749 AGACAAATCG
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 88 1.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
ATGTAGACAAGAGAGCTACGTGAAAGACAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAG
GACACC
Found at i:51417468 original size:2 final size:2
Alignment explanation
Indices: 51417461--51417492 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
51417451 CATATGTTCC
51417461 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51417493 CAGAAACTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51417777 original size:51 final size:51
Alignment explanation
Indices: 51417722--51417821 Score: 121
Period size: 51 Copynumber: 2.0 Consensus size: 51
51417712 CTACCACATA
** * *
51417722 ACATGTAA-CACATCCATAATAAACTCGGACCTCTCAACGAGCTTGGATGTT
1 ACATG-AATCACATCCATAATAAACTCAAACCACTCAACGAGCTCGGATGTT
* * *
51417773 ACATGAATCGCATCCATTATGAACTCAAACCACTCAACGAGCTCGGATG
1 ACATGAATCACATCCATAATAAACTCAAACCACTCAACGAGCTCGGATG
51417822 CTCACATCCA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 2 0.05
51 39 0.95
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (51 bp):
ACATGAATCACATCCATAATAAACTCAAACCACTCAACGAGCTCGGATGTT
Found at i:51417831 original size:43 final size:42
Alignment explanation
Indices: 51417783--51417870 Score: 113
Period size: 43 Copynumber: 2.1 Consensus size: 42
51417773 ACATGAATCG
* * *
51417783 CATCCATTATGAACTCAAACCACTCAACGAGCTCGGATGCTCA
1 CATCCATAATGAACTCAAACCACTCAACCAGCTCAGATGC-CA
* * *
51417826 CATCCATAATGAACTCGAACCTCTTAACCAGCTCAGATGCCA
1 CATCCATAATGAACTCAAACCACTCAACCAGCTCAGATGCCA
51417868 CAT
1 CAT
51417871 ATCTCACGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 5 0.13
43 34 0.87
ACGTcount: A:0.33, C:0.33, G:0.12, T:0.22
Consensus pattern (42 bp):
CATCCATAATGAACTCAAACCACTCAACCAGCTCAGATGCCA
Found at i:51424064 original size:20 final size:20
Alignment explanation
Indices: 51424039--51424078 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
51424029 CCCTTATATG
51424039 GGTTTATGAAGCCCAAAACA
1 GGTTTATGAAGCCCAAAACA
51424059 GGTTTATGAAGCCCAAAACA
1 GGTTTATGAAGCCCAAAACA
51424079 TACTTTAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (20 bp):
GGTTTATGAAGCCCAAAACA
Found at i:51425626 original size:16 final size:15
Alignment explanation
Indices: 51425602--51425631 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
51425592 AACTGTTTTA
51425602 TTACAAATTTCACTC
1 TTACAAATTTCACTC
51425617 TTACATAATTTCACT
1 TTACA-AATTTCACT
51425632 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:51425906 original size:14 final size:14
Alignment explanation
Indices: 51425887--51425925 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
51425877 AACTATCTGG
51425887 TACACGTAGTAGCC
1 TACACGTAGTAGCC
51425901 TACACGTAGTAGCC
1 TACACGTAGTAGCC
*
51425915 TACACTTAGTA
1 TACACGTAGTA
51425926 CTACACACGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (14 bp):
TACACGTAGTAGCC
Found at i:51425921 original size:64 final size:64
Alignment explanation
Indices: 51425841--51425975 Score: 198
Period size: 64 Copynumber: 2.1 Consensus size: 64
51425831 ATCTGGTACG
* ** * * *
51425841 CGTAGTAGCCTTCACTTAGCACTACACGTGTGACCTAACTATCTGGTACACGTAGTAGCCTACA
1 CGTAGTAGCCTACACTTAGCACTACACACGAGACCTAACCATCTGATACACGTAGTAGCCTACA
*
51425905 CGTAGTAGCCTACACTTAGTACTACACACGAGACCTAACCATCTGATACACGTAGTAGCCTACA
1 CGTAGTAGCCTACACTTAGCACTACACACGAGACCTAACCATCTGATACACGTAGTAGCCTACA
*
51425969 CTTAGTA
1 CGTAGTA
51425976 CTACACATGT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (64 bp):
CGTAGTAGCCTACACTTAGCACTACACACGAGACCTAACCATCTGATACACGTAGTAGCCTACA
Found at i:51425931 original size:12 final size:13
Alignment explanation
Indices: 51425887--51425931 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
51425877 AACTATCTGG
51425887 TACACGTAGTAGCC
1 TACACGTAGTA-CC
51425901 TACACGTAGTAGCC
1 TACACGTAGTA-CC
*
51425915 TACACTTAGTA-C
1 TACACGTAGTACC
51425927 TACAC
1 TACAC
51425932 ACGAGACCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 6 0.20
14 24 0.80
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (13 bp):
TACACGTAGTACC
Found at i:51425959 original size:50 final size:50
Alignment explanation
Indices: 51425901--51426084 Score: 260
Period size: 50 Copynumber: 3.6 Consensus size: 50
51425891 CGTAGTAGCC
*
51425901 TACACGTAGTAGCCTACACTTAGTACTACACACGAGACCTAACCATCTGA
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGA
* * *
51425951 TACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTAACTATCTGG
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGA
* *
51426001 TATACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACCATCTTA
1 TACACGTAGTAGCCTACACTTAGTACTACACACGTGACCT--AACCATCTGA
* * * *
51426053 AACACATAGTAGCCTGCACATAGTACTACACA
1 TACACGTAGTAGCCTACACTTAGTACTACACA
51426085 TGTGTTCTTA
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
50 84 0.71
52 34 0.29
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (50 bp):
TACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGA
Found at i:51435087 original size:51 final size:49
Alignment explanation
Indices: 51434957--51435201 Score: 285
Period size: 49 Copynumber: 4.9 Consensus size: 49
51434947 TCTATTGTGA
* * *
51434957 GGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGACAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
51435006 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * **
51435056 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
51435106 AGGTCACGTGTGTAGTACTAAGTGCAGGCTAATACGTGTACC-GAATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATT
* * * * *
51435156 GGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
51435202 GCTTTGGCTA
Statistics
Matches: 164, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
49 79 0.48
50 47 0.29
51 38 0.23
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:51435093 original size:28 final size:28
Alignment explanation
Indices: 51435061--51435144 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
51435051 AACTTCGATC
51435061 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
51435089 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
*
51435111 ACGTGTGTAGTACTAAGTGCAGGCTAAT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
51435139 ACGTGT
1 ACGTGT
51435145 ACCGAATAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 3 0.07
25 6 0.15
26 3 0.07
27 1 0.02
28 14 0.34
29 2 0.05
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:51438508 original size:79 final size:81
Alignment explanation
Indices: 51438407--51438591 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
51438397 ACGACTCGCT
** * *
51438407 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
51438470 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
51438487 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
51438551 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
51438567 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51438592 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:51438591 original size:40 final size:39
Alignment explanation
Indices: 51438400--51438591 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
51438390 GGATATAACG
* ** * *
51438400 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
51438440 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
51438480 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
51438519 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
51438559 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
51438592 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:51444171 original size:79 final size:81
Alignment explanation
Indices: 51444070--51444254 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
51444060 ACGACTCGCT
** * *
51444070 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
51444133 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
51444150 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
51444214 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
51444230 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51444255 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:51444254 original size:40 final size:39
Alignment explanation
Indices: 51444063--51444254 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
51444053 GGATATAACG
* ** * *
51444063 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
51444103 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
51444143 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
51444182 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
51444222 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
51444255 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:51452223 original size:38 final size:40
Alignment explanation
Indices: 51452110--51452293 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
51452100 ACGACTCGCT
** * *
51452110 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
* * *
51452150 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* *
51452190 CAAATGCCTTC-GG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
51452228 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
51452269 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51452294 CATCATTCGA
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 33 0.28
39 2 0.02
40 72 0.61
41 11 0.09
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:51452226 original size:78 final size:80
Alignment explanation
Indices: 51452110--51452293 Score: 207
Period size: 78 Copynumber: 2.3 Consensus size: 80
51452100 ACGACTCGCT
** * * *
51452110 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
51452173 GGGTTTAGTAACTT-GCA
63 GGATATAGTAACTTAGCA
**
51452190 CAAATGCCTTC-GG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
51452253 ATATAGTCACTTAGCA
65 ATATAGTAACTTAGCA
51452269 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
51452294 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
77 3 0.03
78 51 0.57
79 13 0.15
80 22 0.25
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGTAACTTAGCA
Found at i:51456724 original size:49 final size:50
Alignment explanation
Indices: 51456647--51456876 Score: 248
Period size: 49 Copynumber: 4.6 Consensus size: 50
51456637 TATTGTGAGG
51456647 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
* * * ** * *
51456696 TCGCATGTGTAGTACTAAGTGCAAGCTACTATGCATACCCGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTAGA
* * * ** *
51456747 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
* * * * *
51456797 TCACATGTGTAGTACTAAGAGCAGCCTACTACATGTACCGGATAGTT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
* * *
51456846 TCGCATGTGTAGTACGAAGTACAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
51456877 TGCATACCAG
Statistics
Matches: 149, Mismatches: 30, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
49 67 0.45
50 45 0.30
51 37 0.25
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGA
Found at i:51469883 original size:16 final size:17
Alignment explanation
Indices: 51469859--51469893 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
51469849 TTTAGTCATT
*
51469859 ATTTTATAAAA-TCACA
1 ATTTAATAAAATTCACA
51469875 ATTTAATAAAATTCACA
1 ATTTAATAAAATTCACA
51469892 AT
1 AT
51469894 AGACCCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (17 bp):
ATTTAATAAAATTCACA
Found at i:51480951 original size:17 final size:19
Alignment explanation
Indices: 51480919--51480955 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
51480909 TATTTTATTG
51480919 TAATTTAACTTAAATTAAC
1 TAATTTAACTTAAATTAAC
51480938 TAATTT-AC-TAAATTAAC
1 TAATTTAACTTAAATTAAC
51480955 T
1 T
51480956 CTTAATAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.56
18 2 0.11
19 6 0.33
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATTTAACTTAAATTAAC
Found at i:51481210 original size:11 final size:11
Alignment explanation
Indices: 51481194--51481224 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
51481184 TTATAAACAT
*
51481194 TAAAATAATAA
1 TAAAATAAAAA
51481205 TAAAATAAAAA
1 TAAAATAAAAA
51481216 TAAAATAAA
1 TAAAATAAA
51481225 TATTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:51484017 original size:6 final size:6
Alignment explanation
Indices: 51484002--51484066 Score: 78
Period size: 6 Copynumber: 11.0 Consensus size: 6
51483992 ATTGAGTCCA
* *
51484002 TTTA-T TTTATT TTTATT TTTATT TTTATT TTTAGT TTTATT TCTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
***
51484049 TTTCGG TTTATT TTTATT
1 TTTATT TTTATT TTTATT
51484067 ACTTAGACTT
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
5 4 0.08
6 45 0.92
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:51484029 original size:18 final size:18
Alignment explanation
Indices: 51484002--51484066 Score: 87
Period size: 18 Copynumber: 3.7 Consensus size: 18
51483992 ATTGAGTCCA
*
51484002 TTTA-TTTTATTTTTATT
1 TTTATTTTTATTTTTAGT
51484019 TTTATTTTTATTTTTAGT
1 TTTATTTTTATTTTTAGT
* * *
51484037 TTTATTTCTATTTTTCGG
1 TTTATTTTTATTTTTAGT
51484055 TTTATTTTTATT
1 TTTATTTTTATT
51484067 ACTTAGACTT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
17 4 0.10
18 38 0.90
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (18 bp):
TTTATTTTTATTTTTAGT
Found at i:51488259 original size:25 final size:24
Alignment explanation
Indices: 51488223--51488350 Score: 109
Period size: 25 Copynumber: 5.2 Consensus size: 24
51488213 GTACATGTAT
* *
51488223 GCTCATATGAGCTATGAATCGGTAT
1 GCTCATACGAGCTA-GAATCGGTAA
51488248 GCTC-TCACGAGCT-GTAAATCGGTAA
1 GCTCAT-ACGAGCTAG--AATCGGTAA
* *
51488273 GCACATACGAGCTGAGAATCTGTAA
1 GCTCATACGAGCT-AGAATCGGTAA
*
51488298 GCTC-TCACGAGCTACAATCGGTAA
1 GCTCAT-ACGAGCTAGAATCGGTAA
**
51488322 GCTCATACGAGCTAAGAATCAATAA
1 GCTCATACGAGCT-AGAATCGGTAA
51488347 GCTC
1 GCTC
51488351 TCATGAGTTG
Statistics
Matches: 84, Mismatches: 10, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
23 1 0.01
24 22 0.26
25 59 0.70
26 1 0.01
27 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (24 bp):
GCTCATACGAGCTAGAATCGGTAA
Found at i:51488365 original size:49 final size:49
Alignment explanation
Indices: 51488223--51488370 Score: 170
Period size: 49 Copynumber: 3.0 Consensus size: 49
51488213 GTACATGTAT
* * * * *
51488223 GCTCATATGAGCTATGAATCGGTATGCTCTCACGAGCTGTAAATCGGTAA
1 GCTCATACGAGCTAAGAATCAGTAAGCTCTCACGAGCTG-CAATCGGTAA
* * * *
51488273 GCACATACGAGCTGAGAATCTGTAAGCTCTCACGAGCTACAATCGGTAA
1 GCTCATACGAGCTAAGAATCAGTAAGCTCTCACGAGCTGCAATCGGTAA
* * * *
51488322 GCTCATACGAGCTAAGAATCAATAAGCTCTCATGAGTTGCAATCAGTAA
1 GCTCATACGAGCTAAGAATCAGTAAGCTCTCACGAGCTGCAATCGGTAA
51488371 TCCCTAATGA
Statistics
Matches: 82, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
49 50 0.61
50 32 0.39
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (49 bp):
GCTCATACGAGCTAAGAATCAGTAAGCTCTCACGAGCTGCAATCGGTAA
Found at i:51490346 original size:40 final size:40
Alignment explanation
Indices: 51490301--51490489 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
51490291 CGACAACAAA
51490301 TCGGCTATATATGGCACTTAGTGTGCGATTCAACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCAACATAGCT
*
51490341 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCAACATAGCT
* * *
51490381 TCGGCCATATATGGCACTTAGTGT-CTGAGATCAAAATAGCT
1 TCGGCTATATATGGCACTTAGTGTGC-GA-TTCAACATAGCT
* * * * ** *
51490422 TTGGCTATATTTGGCATTTAGTGTGTGATTTGAGATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCAACATAGCT
** * * *
51490462 TCAACTATGTACGGCATTTAGTGTGCGA
1 TCGGCTATATATGGCACTTAGTGTGCGA
51490490 GATCTCGAGT
Statistics
Matches: 125, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 93 0.74
41 31 0.25
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGCGATTCAACATAGCT
Found at i:51490460 original size:81 final size:80
Alignment explanation
Indices: 51490301--51490463 Score: 220
Period size: 81 Copynumber: 2.0 Consensus size: 80
51490291 CGACAACAAA
* * *
51490301 TCGGCTATATATGGCACTTAGTGTGCGATTCAACATAGCTTCGGCTATATATGGCACTTAGTGTG
1 TCGGCCATATATGGCACTTAGTGTGCGAATCAAAATAGCTTCGGCTATATATGGCACTTAGTGTG
51490366 CGATTCGACATAGCT
66 CGATTCGACATAGCT
* * *
51490381 TCGGCCATATATGGCACTTAGTGT-CTGAGATCAAAATAGCTTTGGCTATATTTGGCATTTAGTG
1 TCGGCCATATATGGCACTTAGTGTGC-GA-ATCAAAATAGCTTCGGCTATATATGGCACTTAGTG
* * *
51490445 TGTGATTTGAGATAGCT
64 TGCGATTCGACATAGCT
51490462 TC
1 TC
51490464 AACTATGTAC
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 25 0.35
81 46 0.64
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (80 bp):
TCGGCCATATATGGCACTTAGTGTGCGAATCAAAATAGCTTCGGCTATATATGGCACTTAGTGTG
CGATTCGACATAGCT
Found at i:51490483 original size:81 final size:81
Alignment explanation
Indices: 51490307--51490493 Score: 216
Period size: 81 Copynumber: 2.3 Consensus size: 81
51490297 CAAATCGGCT
* * *
51490307 ATATATGGCACTTAGTGTGCGA-TTCAACATAGCTTCGGCTATATATGGCACTTAGTGTGCGATT
1 ATATACGGCACTTAGTGTGCGAGATCAAAATAGCTTCGGCTATATATGGCACTTAGTGTGCGATT
**
51490371 CGACATAGCTTCGGCC
66 CGACATAGCTTCAACC
* * * * *
51490387 ATATATGGCACTTAGTGT-CTGAGATCAAAATAGCTTTGGCTATATTTGGCATTTAGTGTGTGAT
1 ATATACGGCACTTAGTGTGC-GAGATCAAAATAGCTTCGGCTATATATGGCACTTAGTGTGCGAT
* * *
51490451 TTGAGATAGCTTCAACT
65 TCGACATAGCTTCAACC
* *
51490468 ATGTACGGCATTTAGTGTGCGAGATC
1 ATATACGGCACTTAGTGTGCGAGATC
51490494 TCGAGTATTC
Statistics
Matches: 90, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 20 0.22
81 68 0.76
82 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (81 bp):
ATATACGGCACTTAGTGTGCGAGATCAAAATAGCTTCGGCTATATATGGCACTTAGTGTGCGATT
CGACATAGCTTCAACC
Found at i:51491122 original size:25 final size:25
Alignment explanation
Indices: 51491084--51491135 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
51491074 TGATGTGTGT
51491084 TTGGTAATTGTTTAGCTA-G-TTGA
1 TTGGTAATTGTTTAGCTATGTTTGA
51491107 TTGGTATATATGTTTAGCTATGTTTGA
1 TTGGTA-AT-TGTTTAGCTATGTTTGA
51491134 TT
1 TT
51491136 AAGAAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 6 0.24
24 2 0.08
25 10 0.40
26 1 0.04
27 6 0.24
ACGTcount: A:0.21, C:0.04, G:0.23, T:0.52
Consensus pattern (25 bp):
TTGGTAATTGTTTAGCTATGTTTGA
Found at i:51496062 original size:40 final size:40
Alignment explanation
Indices: 51496025--51496249 Score: 258
Period size: 40 Copynumber: 5.7 Consensus size: 40
51496015 GCTACTCGTT
*
51496025 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGAACTTAGCCCGGATT-TAGTAACTCGCA
* *
51496065 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGAACTTAGCCCGGATTTAGTAACTCGCA
* * * *
51496105 CCAATGCCTTCGG-GCTTAGCCCGGAATTAGTAACTTGCA
1 CAAATGCCTTCGGAACTTAGCCCGGATTTAGTAACTCGCA
* *
51496144 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGAACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
51496184 CAAATGCCTTTGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGAACTTAGCCCGGATTTAGTAAC-TCGCA
* *
51496225 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGAACTTAGCCCGGA
51496250 CATCATTCGA
Statistics
Matches: 162, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGAACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51496136 original size:79 final size:80
Alignment explanation
Indices: 51496025--51496249 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 80
51496015 GCTACTCGTT
* * * *
51496025 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGAACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
51496090 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
* * * *
51496105 CCAATGCCTTCGG-GCTTAGCCCGGA-ATTAGTAACTTGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGAACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGA-CTTAGCCC
51496167 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
* * * * *
51496184 CAAATGCCTTTGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTTGGGACTTAGCCCG
1 CAAATGCCTTCGGAACTTAGCCCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCG
51496248 GA
65 GA
51496250 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.03
79 65 0.52
80 43 0.35
81 12 0.10
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGAACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
ATTTAGTAACTCGCA
Found at i:51496209 original size:119 final size:120
Alignment explanation
Indices: 51496025--51496249 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
51496015 GCTACTCGTT
51496025 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
51496090 ATTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCA
66 ATATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCA
* * * * **
51496144 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTT-TGGATCTTAGTCC
1 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
51496207 GGATATAGTCACTTAGCACAAAGCCTTTGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
51496250 CATCATTCGA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 3 0.03
119 71 0.78
120 17 0.19
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCA
Found at i:51505823 original size:27 final size:28
Alignment explanation
Indices: 51505767--51505836 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
51505757 AAACTTGTAC
51505767 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
51505795 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
51505822 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51505837 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:51505847 original size:27 final size:27
Alignment explanation
Indices: 51505767--51505848 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
51505757 AAACTTGTAC
* *
51505767 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
51505795 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
51505822 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
51505849 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:51513841 original size:27 final size:28
Alignment explanation
Indices: 51513785--51513854 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
51513775 AAACTTGTAC
*
51513785 AGCACTAAGTATGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
51513813 AGCACTAAGTGTGCGAG-TTGATGATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
51513840 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51513855 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:51515464 original size:40 final size:39
Alignment explanation
Indices: 51515427--51515650 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 39
51515417 GCTACTCGTT
*
51515427 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGAACTTAGCCCGGTT-TAGTAACTCGCA
* * *
51515467 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGAACTTAGCCC-GGTTTAGTAACTCGCA
* * * *
51515507 CCAATGCCTTCGG-GCTTAGCCCGGAATTAGTAACTTGCA
1 CAAATGCCTTCGGAACTTAGCCCGG-TTTAGTAACTCGCA
* *
51515546 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGAACTTAGCCCGG-TTTAGTAACTCGCA
* * * * * *
51515586 CAAATGCCTTCGGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGAACTTAGCCCGG-TTTAGTAAC-TCGCA
*
51515627 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGAACTTAGCCCGG
51515651 ACATCATTTG
Statistics
Matches: 157, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 31 0.20
40 114 0.73
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGAACTTAGCCCGGTTTAGTAACTCGCA
Found at i:51515527 original size:79 final size:79
Alignment explanation
Indices: 51515427--51515644 Score: 253
Period size: 79 Copynumber: 2.7 Consensus size: 79
51515417 GCTACTCGTT
* *
51515427 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGAACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCAG
51515492 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* * * * ** *
51515507 CCAATGCCTTCGG-GCTTAGCCCGGAATTAGTAACTTGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGAACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCTTCGGGA-CTTAACCCA
51515570 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * * *
51515586 CAAATGCCTTCGGATCTTAGTCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGAACTTAGCCCGG-TATAGTAAC-TAGCACAAATGCCTTCGGGACTTA
51515645 GCCCGGACAT
Statistics
Matches: 117, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
78 4 0.03
79 65 0.56
80 36 0.31
81 12 0.10
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (79 bp):
CAAATGCCTTCGGAACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCAGA
TTTAGTAACTCGCA
Found at i:51515635 original size:119 final size:120
Alignment explanation
Indices: 51515427--51515651 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
51515417 GCTACTCGTT
51515427 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* * *
51515492 ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCA
66 ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCA
* * * ** *
51515546 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCT
1 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
51515609 GGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
64 AGATATAGTAAC-TAGCACCAAAGCCTTCGGGACTTAGCCCGGA
51515652 CATCATTTGA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 3 0.03
119 71 0.78
120 17 0.19
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCA
Found at i:51520484 original size:41 final size:40
Alignment explanation
Indices: 51520389--51520485 Score: 97
Period size: 41 Copynumber: 2.4 Consensus size: 40
51520379 AAATTGGTTG
* * *
51520389 TATAT-GACACTTAGTGTGCGATTCGACATAGCTTCAGTTA
1 TATATGGA-ACTTAGTGTGCGAATCGAAATAGCTTCAGCTA
* **
51520429 TATATGGCACTTAGTGTGCGAGATCGAAATAGCTTTGGCTA
1 TATATGGAACTTAGTGTGCGA-ATCGAAATAGCTTCAGCTA
* *
51520470 TATTTGGAATTTAGTG
1 TATATGGAACTTAGTG
51520486 CATGATTTGA
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
40 18 0.39
41 28 0.61
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (40 bp):
TATATGGAACTTAGTGTGCGAATCGAAATAGCTTCAGCTA
Found at i:51537042 original size:27 final size:28
Alignment explanation
Indices: 51536986--51537055 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
51536976 AAACTTGTAC
51536986 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
51537014 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
51537041 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51537056 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Done.