Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 184 of 433
Found at i:57886428 original size:32 final size:33
Alignment explanation
Indices: 57886370--57886432 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
57886360 CAATAACAAT
* * *
57886370 AAAATAATAGTAATATAATAATAAAATAATAGC
1 AAAATAATAGAAAAATAATAAGAAAATAATAGC
57886403 AAAATAA-AGAAAAATAATAAGAAAATAATA
1 AAAATAATAGAAAAATAATAAGAAAATAATA
57886433 TTAAAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 20 0.74
33 7 0.26
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (33 bp):
AAAATAATAGAAAAATAATAAGAAAATAATAGC
Found at i:57886870 original size:20 final size:20
Alignment explanation
Indices: 57886810--57886870 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
57886800 TTAATCCAAA
*
57886810 TATATGTAATATTTTAATTTGT
1 TATAT-TAATA-TTTAATATGT
* **
57886832 TA-AGTTTATATTTTTTATGT
1 TATA-TTAATATTTAATATGT
57886852 TATATTAATATTTAATATG
1 TATATTAATATTTAATATG
57886871 AGTTATATAT
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
20 21 0.70
21 6 0.20
22 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
TATATTAATATTTAATATGT
Found at i:57887217 original size:2 final size:2
Alignment explanation
Indices: 57887201--57887246 Score: 76
Period size: 2 Copynumber: 23.0 Consensus size: 2
57887191 TTTATTACTT
57887201 TA TA -A TA TCA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
57887243 TA TA
1 TA TA
57887247 AAATAAACAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 1 0.02
2 39 0.93
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:57889093 original size:18 final size:18
Alignment explanation
Indices: 57889070--57889104 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
57889060 TTTTAAAATA
*
57889070 ATTTTAATGTTTTTCATT
1 ATTTTAATCTTTTTCATT
57889088 ATTTTAATCTTTTTCAT
1 ATTTTAATCTTTTTCAT
57889105 CGTGGAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.09, G:0.03, T:0.66
Consensus pattern (18 bp):
ATTTTAATCTTTTTCATT
Found at i:57893956 original size:21 final size:21
Alignment explanation
Indices: 57893931--57893970 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
57893921 TAAATTATCT
57893931 CCAAATCCCTAATTGACAGCC
1 CCAAATCCCTAATTGACAGCC
* *
57893952 CCAAATCTCTTATTGACAG
1 CCAAATCCCTAATTGACAG
57893971 ATTATATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.33, G:0.10, T:0.25
Consensus pattern (21 bp):
CCAAATCCCTAATTGACAGCC
Found at i:57898297 original size:35 final size:35
Alignment explanation
Indices: 57898251--57898319 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
57898241 TCTGAGGATG
*
57898251 GTCCCTGTACTTATCTATTTGT-CTGGATTTAGTCT
1 GTCCCTGTACTTATCGATTTGTGC-GGATTTAGTCT
*
57898286 GTCCCTGTACTTATGGATTTGTGCGGATTTAGTC
1 GTCCCTGTACTTATCGATTTGTGCGGATTTAGTC
57898320 CTCTACTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 30 0.97
36 1 0.03
ACGTcount: A:0.14, C:0.19, G:0.22, T:0.45
Consensus pattern (35 bp):
GTCCCTGTACTTATCGATTTGTGCGGATTTAGTCT
Found at i:57901460 original size:19 final size:20
Alignment explanation
Indices: 57901408--57901473 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
57901398 CGAAAAATGA
57901408 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
57901428 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
57901448 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATTTACT
57901467 TTTCTGG
1 TTTCTGG
57901474 TGTTTGGATG
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
19 19 0.41
20 27 0.59
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.47
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:57904139 original size:27 final size:27
Alignment explanation
Indices: 57904109--57904163 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
57904099 AATGATAAGG
57904109 TGTGCATTTAGCTGTATGTAAATATTT
1 TGTGCATTTAGCTGTATGTAAATATTT
57904136 TGTGCATTTAGCTGTATGTAAATATTT
1 TGTGCATTTAGCTGTATGTAAATATTT
57904163 T
1 T
57904164 TATCAAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.07, G:0.18, T:0.49
Consensus pattern (27 bp):
TGTGCATTTAGCTGTATGTAAATATTT
Found at i:57906240 original size:43 final size:43
Alignment explanation
Indices: 57906115--57906270 Score: 151
Period size: 42 Copynumber: 3.7 Consensus size: 43
57906105 TATGTTATCG
* * *
57906115 TGTAAGACCAC-GTCTGGAACGTTGGCATCGAT-TTGTGATTTACG
1 TGTAAGA-CACTGTCTGGGACATTGGCATCGATATT-TGATTT-CA
* * *
57906159 TGTAAGAC-CATGTCTGGGACATTGGTATTG-TATATGATTTCA
1 TGTAAGACAC-TGTCTGGGACATTGGCATCGATATTTGATTTCA
* * * *
57906201 TGCAAGACACTGTCTGGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACACTGTCTGGGACATTGGCATCGATATTTGATTTCA
57906244 TGTAAGACAC-GTCTGGGACATTGGCAT
1 TGTAAGACACTGTCTGGGACATTGGCAT
57906271 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 16, Indels: 12
0.76 0.13 0.10
Matches are distributed among these distances:
42 40 0.44
43 28 0.31
44 23 0.25
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACACTGTCTGGGACATTGGCATCGATATTTGATTTCA
Found at i:57915332 original size:249 final size:249
Alignment explanation
Indices: 57914894--57915392 Score: 980
Period size: 249 Copynumber: 2.0 Consensus size: 249
57914884 CCCGTAGATA
*
57914894 CTATTACATAAATCACTATTCATTTGGTAATTTATCTTTGTTTCACTTGCAATCCCTATTAAACA
1 CTATTACATAAATCACTATTCATTTGGTAATTTATCTTTGTTTCACTTACAATCCCTATTAAACA
57914959 AATAATCTCAATAAATAATCTTTATTTAACTTTATTAACCATACCTATATCATTATACAATTAAC
66 AATAATCTCAATAAATAATCTTTATTTAACTTTATTAACCATACCTATATCATTATACAATTAAC
*
57915024 CACTTTAAGTAGATATACACTTTCTATGCAAATCGAACCAAATAAAGCTATGCGTATTCGAACAT
131 CACTTTAAGTAGATATACACTTTCTATGCAAACCGAACCAAATAAAGCTATGCGTATTCGAACAT
57915089 ACACATAATTTATTAACATTTTTAAACTATCAATAACCAACCAAGTTCACTAAT
196 ACACATAATTTATTAACATTTTTAAACTATCAATAACCAACCAAGTTCACTAAT
57915143 CTATTACATAAATCACTATTCATTTGGTAATTTATCTTTGTTTCACTTACAATCCCTATTAAACA
1 CTATTACATAAATCACTATTCATTTGGTAATTTATCTTTGTTTCACTTACAATCCCTATTAAACA
57915208 AATAATCTCAATAAATAATCTTTATTTAACTTTATTAACCATACCTATATCATTATACAATTAAC
66 AATAATCTCAATAAATAATCTTTATTTAACTTTATTAACCATACCTATATCATTATACAATTAAC
57915273 CACTTTAAGTAGATATACACTTTCTATGCAAACCGAACCAAATAAAGCTATGCGTATTCGAACAT
131 CACTTTAAGTAGATATACACTTTCTATGCAAACCGAACCAAATAAAGCTATGCGTATTCGAACAT
57915338 ACACATAATTTATTAACATTTTTAAACTATCAATAACCAACCAAGTTCACTAAT
196 ACACATAATTTATTAACATTTTTAAACTATCAATAACCAACCAAGTTCACTAAT
57915392 C
1 C
57915393 ATTTTCAAGC
Statistics
Matches: 248, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
249 248 1.00
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (249 bp):
CTATTACATAAATCACTATTCATTTGGTAATTTATCTTTGTTTCACTTACAATCCCTATTAAACA
AATAATCTCAATAAATAATCTTTATTTAACTTTATTAACCATACCTATATCATTATACAATTAAC
CACTTTAAGTAGATATACACTTTCTATGCAAACCGAACCAAATAAAGCTATGCGTATTCGAACAT
ACACATAATTTATTAACATTTTTAAACTATCAATAACCAACCAAGTTCACTAAT
Found at i:57917357 original size:29 final size:29
Alignment explanation
Indices: 57917291--57917385 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 29
57917281 AAGTCTACAT
* * *
57917291 ACATGCATATGGCCCACTAGACCC-AATC
1 ACATTCATATGACCCATTAGACCCAAATC
* * *
57917319 TCATTCATATGACCCATTTGGCCCAAATC
1 ACATTCATATGACCCATTAGACCCAAATC
*
57917348 ACATTCATATGACCCATTAGACCTAAATC
1 ACATTCATATGACCCATTAGACCCAAATC
57917377 ACATTCATA
1 ACATTCATA
57917386 GTCATGCTTT
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 18 0.32
29 38 0.68
ACGTcount: A:0.34, C:0.31, G:0.09, T:0.26
Consensus pattern (29 bp):
ACATTCATATGACCCATTAGACCCAAATC
Found at i:57929272 original size:26 final size:27
Alignment explanation
Indices: 57929218--57929272 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
57929208 TTGTCGTAAA
*
57929218 TTCAAATCTTTTTGATTCATCAAATAT
1 TTCAAATCTTTTTGATTCATCAAAGAT
57929245 TTCAAA-CTTTTGTGA-TCAGT-AAAGAT
1 TTCAAATCTTTT-TGATTCA-TCAAAGAT
57929271 TT
1 TT
57929273 GACATTTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (27 bp):
TTCAAATCTTTTTGATTCATCAAAGAT
Found at i:57933727 original size:50 final size:49
Alignment explanation
Indices: 57933613--57933790 Score: 171
Period size: 50 Copynumber: 3.6 Consensus size: 49
57933603 CTGATATGCA
*
57933613 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCCAGTACACG
* * * * *
57933662 TAGTAGCCTGCACTTAGTACTATACACGTGACCTCACCA-CCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AACAATCCAG-TACACG
*** * ** * *
57933712 TAGTAGCCTGCACTTAGTACTACACATATGATCGAAGTC-ATTGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA--CAATCCAGTACACG
57933763 TAGTAGCCTGCACTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
57933791 TGTATTCACA
Statistics
Matches: 105, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
49 33 0.31
50 38 0.36
51 32 0.30
52 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCCAGTACACG
Found at i:57943978 original size:20 final size:19
Alignment explanation
Indices: 57943946--57944001 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
57943936 GATATGTCTT
*
57943946 TCAAAATAAAATAATAAAA
1 TCAAAATAAAATAAAAAAA
**
57943965 TTGAAATGAAAATAAAAAAA
1 TCAAAAT-AAAATAAAAAAA
57943985 TCAAAATAAAAATAAAA
1 TCAAAAT-AAAATAAAA
57944002 CTAAATAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 5 0.17
20 25 0.83
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (19 bp):
TCAAAATAAAATAAAAAAA
Found at i:57943985 original size:14 final size:14
Alignment explanation
Indices: 57943968--57944015 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
57943958 AATAAAATTG
*
57943968 AAATGAAAATAAAA
1 AAATCAAAATAAAA
57943982 AAATCAAAATAAAAA
1 AAATCAAAAT-AAAA
* *
57943997 TAAAACTAAATAAAA
1 -AAATCAAAATAAAA
57944012 AAAT
1 AAAT
57944016 AGGAGGATTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 12 0.43
15 8 0.29
16 8 0.29
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (14 bp):
AAATCAAAATAAAA
Found at i:57946057 original size:24 final size:24
Alignment explanation
Indices: 57946025--57946074 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
57946015 AAATCGAGCC
57946025 TTGTCCCTGGCATGCCCGTGGGTT
1 TTGTCCCTGGCATGCCCGTGGGTT
57946049 TTGTCCCTGGCATGCCCGTGGGTT
1 TTGTCCCTGGCATGCCCGTGGGTT
57946073 TT
1 TT
57946075 CATTCCCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.04, C:0.28, G:0.32, T:0.36
Consensus pattern (24 bp):
TTGTCCCTGGCATGCCCGTGGGTT
Found at i:57946699 original size:13 final size:13
Alignment explanation
Indices: 57946681--57946705 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57946671 CAGTTTATCA
57946681 TGTGTTCTCGCCT
1 TGTGTTCTCGCCT
57946694 TGTGTTCTCGCC
1 TGTGTTCTCGCC
57946706 ATTCGTCTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.32, G:0.24, T:0.44
Consensus pattern (13 bp):
TGTGTTCTCGCCT
Found at i:57950087 original size:29 final size:29
Alignment explanation
Indices: 57950037--57950108 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
57950027 CCTCCGAGCT
* * *
57950037 CGCACAC--AGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
57950064 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
57950093 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
57950109 ATCTCGTCAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
27 6 0.16
29 32 0.84
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:57957880 original size:28 final size:29
Alignment explanation
Indices: 57957849--57957925 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
57957839 CATACCTCCG
* * *
57957849 AGCTCGCACAC-CAGTGCCGTATTTTTTC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
57957877 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
57957906 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
57957926 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 10 0.25
29 30 0.75
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:57965726 original size:29 final size:29
Alignment explanation
Indices: 57965661--57965733 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
57965651 CCCTCGAGCT
** * * *
57965661 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
57965690 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
57965719 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
57965734 GATCTCGTCA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.34, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:57969946 original size:13 final size:13
Alignment explanation
Indices: 57969928--57969952 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57969918 GGTTTGTTTA
57969928 TTAAACTAATTAT
1 TTAAACTAATTAT
57969941 TTAAACTAATTA
1 TTAAACTAATTA
57969953 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:57974498 original size:35 final size:35
Alignment explanation
Indices: 57974456--57974591 Score: 173
Period size: 35 Copynumber: 3.9 Consensus size: 35
57974446 TCTCATATGG
* *
57974456 CCGAATATAAAAATTCAATATAACCTCATATGTAA
1 CCGAATATAAAAGTTCAATATAACCTCACATGTAA
* * *
57974491 CCAAATATAAAAGTGCAATATAAGCTCACATGTAA
1 CCGAATATAAAAGTTCAATATAACCTCACATGTAA
* * * * *
57974526 TCGAATACACAAGTTCAATATAACCTCACATGCAG
1 CCGAATATAAAAGTTCAATATAACCTCACATGTAA
*
57974561 CCGAATATACAAGTTCAATATAACCTCACAT
1 CCGAATATAAAAGTTCAATATAACCTCACAT
57974592 ATACTTTCCT
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 86 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.25
Consensus pattern (35 bp):
CCGAATATAAAAGTTCAATATAACCTCACATGTAA
Found at i:57974828 original size:25 final size:25
Alignment explanation
Indices: 57974794--57974856 Score: 117
Period size: 25 Copynumber: 2.5 Consensus size: 25
57974784 AGCCTGCTAG
57974794 GCATAAAGCTTGATTAAATTCACCA
1 GCATAAAGCTTGATTAAATTCACCA
*
57974819 GCATAAAGCTTGGTTAAATTCACCA
1 GCATAAAGCTTGATTAAATTCACCA
57974844 GCATAAAGCTTGA
1 GCATAAAGCTTGA
57974857 ATATCACTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (25 bp):
GCATAAAGCTTGATTAAATTCACCA
Found at i:57979885 original size:38 final size:38
Alignment explanation
Indices: 57979829--57979906 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 38
57979819 ATTTCGGCAT
** * *
57979829 TTGGTTGTTTCGGGTTTGTGCCTCTCGCGATAGAGTTC
1 TTGGTTGTTTCGAATTTGTGCCTCTCGCGACACAGTTC
* *
57979867 TTGGTTGTTTTGAATTTGTGCGTCTCGCGACACAGTTC
1 TTGGTTGTTTCGAATTTGTGCCTCTCGCGACACAGTTC
57979905 TT
1 TT
57979907 CTTCTTTCTC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.10, C:0.18, G:0.28, T:0.44
Consensus pattern (38 bp):
TTGGTTGTTTCGAATTTGTGCCTCTCGCGACACAGTTC
Found at i:57981199 original size:27 final size:27
Alignment explanation
Indices: 57981168--57981457 Score: 341
Period size: 27 Copynumber: 10.6 Consensus size: 27
57981158 CCCTAAAATA
*
57981168 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
57981195 GGTAAAATGACCGTAATACCCC-GTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
57981221 GGTAAAATGATCGTAATGCCCCTGTAGGG
1 GGTAAAATGACCGTAATGCCCCTGTA--G
* *
57981250 TAAGGTAAAATGACCGTAAT-ACCGTGTAG
1 ---GGTAAAATGACCGTAATGCCCCTGTAG
* *
57981279 GGTAAAATGACCGTAATGCCCTTGTAC
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
57981306 GGTAAAATGACCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
57981333 GGTAAAATTACCGTAATGCACCTGTAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
57981360 GGTAAAATGATCGTAACGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * * *
57981387 GGTAAAAAGACCATAATGCCCTTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
57981414 GGTAAAATGACCGTAATACCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
57981441 GGAAAAATGACCGTAAT
1 GGTAAAATGACCGTAAT
57981458 ATCTCTGTTT
Statistics
Matches: 225, Mismatches: 31, Indels: 14
0.83 0.11 0.05
Matches are distributed among these distances:
26 40 0.18
27 161 0.72
29 2 0.01
31 6 0.03
32 16 0.07
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:57981472 original size:81 final size:79
Alignment explanation
Indices: 57981168--57981492 Score: 326
Period size: 81 Copynumber: 4.0 Consensus size: 79
57981158 CCCTAAAATA
* * * *
57981168 GGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCCGTAGGGTAAAATGATC
1 GGTAAAATGACCGTAAT-ACCCTGTAGGGTAAAATGACCGTAATACCCTGTAGGGTAAAATGACC
* *
57981233 GTAATGCCCCTGTAGGGTAA
65 ATAATG-CCCT-TA---TAG
* * *
57981253 GGTAAAATGACCGTAATACCGTGTAGGGTAAAATGACCGTAATGCCCTTGTACGGTAAAATGACC
1 GGTAAAATGACCGTAATACCCTGTAGGGTAAAATGACCGTAATACCC-TGTAGGGTAAAATGACC
* *
57981318 GTAATGCCCTTGTAG
65 ATAATGCCCTTATAG
* * * * ** *
57981333 GGTAAAATTACCGTAATGCACCTGTAAGGTAAAATGATCGTAACGCCCCTGTAGGGTAAAAAGAC
1 GGTAAAATGACCGTAATAC-CCTGTAGGGTAAAATGACCGTAA-TACCCTGTAGGGTAAAATGAC
57981398 CATAATGCCCTTATAG
64 CATAATGCCCTTATAG
* * **
57981414 GGTAAAATGACCGTAATACCCTTGTAGGGAAAAATGACCGTAATATCTCTGTTTGGTAAAATGAC
1 GGTAAAATGACCGTAATACCC-TGTAGGGTAAAATGACCGTAATA-CCCTGTAGGGTAAAATGAC
* * *
57981479 GATGATGCCATTAT
64 CATAATGCCCTTAT
57981493 GTTTCGAATG
Statistics
Matches: 201, Mismatches: 34, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
80 21 0.10
81 109 0.54
82 3 0.01
83 1 0.00
84 30 0.15
85 37 0.18
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (79 bp):
GGTAAAATGACCGTAATACCCTGTAGGGTAAAATGACCGTAATACCCTGTAGGGTAAAATGACCA
TAATGCCCTTATAG
Found at i:57981651 original size:27 final size:27
Alignment explanation
Indices: 57981620--57981674 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
57981610 GGAAGTACTG
*
57981620 TACTGGTGACTATGTCACATTCACTAT
1 TACTGGTGACTATGCCACATTCACTAT
* * *
57981647 TACTGGTGGCTTTGCCACATTTACTAT
1 TACTGGTGACTATGCCACATTCACTAT
57981674 T
1 T
57981675 TTTGGCAGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (27 bp):
TACTGGTGACTATGCCACATTCACTAT
Found at i:57984590 original size:13 final size:13
Alignment explanation
Indices: 57984572--57984598 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
57984562 GCTTGGCAGG
57984572 GACACGCCCGTGT
1 GACACGCCCGTGT
57984585 GACACGCCCGTGT
1 GACACGCCCGTGT
57984598 G
1 G
57984599 CGATTGCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:57986122 original size:16 final size:16
Alignment explanation
Indices: 57986101--57986140 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
57986091 TAAATATTAT
57986101 ATACTAATTAGAATTC
1 ATACTAATTAGAATTC
57986117 ATACTAATTAGAATTC
1 ATACTAATTAGAATTC
*
57986133 ATTCTAAT
1 ATACTAAT
57986141 AATGATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.40
Consensus pattern (16 bp):
ATACTAATTAGAATTC
Found at i:57989038 original size:25 final size:24
Alignment explanation
Indices: 57989010--57989105 Score: 86
Period size: 26 Copynumber: 3.8 Consensus size: 24
57989000 GAGGAAGTGC
57989010 AAAAGGGCTATGCCCCAGTTTATA
1 AAAAGGGCTATGCCCCAGTTTATA
* *
57989034 GAAAAGGGCTTTTGCCCCAGTTCATCA
1 -AAAAGGGC-TATGCCCCAGTTTAT-A
* * *
57989061 AAAAGGGCTTTGCCTCAG-TTATT
1 AAAAGGGCTATGCCCCAGTTTATA
*
57989084 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
57989106 ATATGTTAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
23 5 0.09
24 10 0.17
25 20 0.34
26 22 0.38
27 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTATGCCCCAGTTTATA
Found at i:57989054 original size:26 final size:25
Alignment explanation
Indices: 57989010--57989080 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 25
57989000 GAGGAAGTGC
* *
57989010 AAAAGGGCTATGCCCCAGTTTAT-A
1 AAAAGGGCTTTGCCCCAGTTCATCA
57989034 GAAAAGGGCTTTTGCCCCAGTTCATCA
1 -AAAAGGGC-TTTGCCCCAGTTCATCA
*
57989061 AAAAGGGCTTTGCCTCAGTT
1 AAAAGGGCTTTGCCCCAGTT
57989081 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
25 19 0.46
26 21 0.51
27 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTCATCA
Found at i:57989093 original size:24 final size:24
Alignment explanation
Indices: 57989009--57989107 Score: 60
Period size: 25 Copynumber: 4.0 Consensus size: 24
57988999 GGAGGAAGTG
* *
57989009 CAAAAG-GGCTATGCCCCAGTTTAT
1 CAAAAGAGGCTTTGCCTCAG-TTAT
* *
57989033 AGAAAAG-GGCTTTTGCCCCAGTTCAT
1 -CAAAAGAGGC-TTTGCCTCAGTT-AT
57989059 CAAAA-AGGGCTTTGCCTCAGTTAT
1 CAAAAGA-GGCTTTGCCTCAGTTAT
* **
57989083 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCCT-CAGTTAT
57989108 ATGTTAAAGC
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
24 14 0.23
25 33 0.54
26 14 0.23
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
CAAAAGAGGCTTTGCCTCAGTTAT
Found at i:57991585 original size:93 final size:93
Alignment explanation
Indices: 57991473--57991643 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57991463 GCCCATAAGT
* *
57991473 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57991538 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
57991566 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57991631 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57991644 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57991659 original size:46 final size:46
Alignment explanation
Indices: 57991465--57991645 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
57991455 TGTAACCCGC
* * *
57991465 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
57991511 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
57991561 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
57991604 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
57991646 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:57994062 original size:30 final size:30
Alignment explanation
Indices: 57994018--57994106 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
57994008 CAAAGATAAC
57994018 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
57994047 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
57994077 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
57994107 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:57994066 original size:15 final size:15
Alignment explanation
Indices: 57994018--57994097 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
57994008 CAAAGATAAC
*
57994018 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
57994032 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
57994047 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
57994062 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
57994077 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
57994092 AAGAAA
1 AAGAAA
57994098 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:57994106 original size:15 final size:15
Alignment explanation
Indices: 57994029--57994106 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
57994019 AGAAAACCGA
57994029 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
57994044 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
57994058 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
57994073 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
57994089 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
57994104 ATA
1 ATA
57994107 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:57997169 original size:93 final size:93
Alignment explanation
Indices: 57997057--57997227 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57997047 GCCCATAAGT
* *
57997057 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57997122 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
57997150 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57997215 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57997228 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57997243 original size:46 final size:46
Alignment explanation
Indices: 57997049--57997229 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
57997039 TGTAACCCGC
* * *
57997049 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
57997095 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
57997145 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
57997188 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
57997230 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:58005286 original size:5 final size:5
Alignment explanation
Indices: 58005251--58005296 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
58005241 CATGAGATTT
* *
58005251 TGATA T-ATA TGATT TGATA CGATA TGCATA TGATA TG-TA TGATA TG
1 TGATA TGATA TGATA TGATA TGATA TG-ATA TGATA TGATA TGATA TG
58005297 CACATGATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
4 8 0.24
5 21 0.62
6 5 0.15
ACGTcount: A:0.35, C:0.04, G:0.20, T:0.41
Consensus pattern (5 bp):
TGATA
Found at i:58005293 original size:9 final size:10
Alignment explanation
Indices: 58005251--58005296 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
58005241 CATGAGATTT
58005251 TGATAT-ATA
1 TGATATGATA
*
58005260 TGATTTGATA
1 TGATATGATA
*
58005270 CGATATGCATA
1 TGATATG-ATA
58005281 TGATATG-TA
1 TGATATGATA
58005290 TGATATG
1 TGATATG
58005297 CACATGATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 14 0.45
10 8 0.26
11 9 0.29
ACGTcount: A:0.35, C:0.04, G:0.20, T:0.41
Consensus pattern (10 bp):
TGATATGATA
Found at i:58005296 original size:20 final size:21
Alignment explanation
Indices: 58005257--58005304 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
58005247 ATTTTGATAT
*
58005257 ATATGATTTGATACGATATGC
1 ATATGATATGATACGATATGC
*
58005278 ATATGATATG-TATGATATGC
1 ATATGATATGATACGATATGC
*
58005298 ACATGAT
1 ATATGAT
58005305 GTATTCATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (21 bp):
ATATGATATGATACGATATGC
Found at i:58005419 original size:26 final size:25
Alignment explanation
Indices: 58005351--58005445 Score: 120
Period size: 25 Copynumber: 3.8 Consensus size: 25
58005341 AAGGAAGTGC
* * *
58005351 AAAAGGGCTATGCCCTAG-TTACTG
1 AAAAGGGCTTTGCCCCAGTTTACCG
58005375 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
58005400 AAAAGGGCTTTTGCCCCAGTTCATCA
1 AAAAGGGC-TTTGCCCCAGTTTACCG
58005426 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
58005446 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.25
25 25 0.40
26 22 0.35
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:58005458 original size:24 final size:23
Alignment explanation
Indices: 58005351--58005472 Score: 109
Period size: 25 Copynumber: 5.0 Consensus size: 23
58005341 AAGGAAGTGC
* *
58005351 AAAAGGGCTATGCCCTAGTTACTG
1 AAAAGGGCTTTGCCCCAGTTA-TG
*
58005375 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAG-TTA-TG
*
58005400 AAAAGGGCTTTTGCCCCAGTTCATCA
1 AAAAGGGC-TTTGCCCCAGTT-AT-G
*
58005426 AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTTGCCCCAGTTATG
**
58005449 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
58005473 ATGTTAAAGC
Statistics
Matches: 84, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
23 5 0.06
24 25 0.30
25 35 0.42
26 19 0.23
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATG
Found at i:58028307 original size:39 final size:39
Alignment explanation
Indices: 58028263--58028465 Score: 243
Period size: 39 Copynumber: 5.2 Consensus size: 39
58028253 CCTTCGGAGT
*
58028263 TTAGCCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCGGATATAG-TAACTAGCACAAATGCCTTCGGGAC
* *
58028302 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
58028342 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTC-GGAC
1 TTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
58028381 TTATCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTA-GCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
58028420 TTAGCTCGGA-ATTAGTCACTAGCACAAATTCCTTCGGGAC
1 TTAGC-CGGATA-TAGTAACTAGCACAAATGCCTTCGGGAC
58028460 TTAGCC
1 TTAGCC
58028466 CGGGTATCAA
Statistics
Matches: 146, Mismatches: 11, Indels: 14
0.85 0.06 0.08
Matches are distributed among these distances:
38 2 0.01
39 72 0.49
40 72 0.49
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (39 bp):
TTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:58028330 original size:40 final size:40
Alignment explanation
Indices: 58028286--58028468 Score: 264
Period size: 39 Copynumber: 4.6 Consensus size: 40
58028276 GCTACTAGCT
58028286 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
58028326 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
58028366 CAAATGCCTTC-GGACTTATCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
58028405 CAAATGCCTTCGGG-CTTAGCTCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
58028444 CAAATTCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
58028469 GTATCAATCC
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 67 0.52
40 61 0.47
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:58028389 original size:79 final size:79
Alignment explanation
Indices: 58028279--58028468 Score: 276
Period size: 79 Copynumber: 2.4 Consensus size: 79
58028269 GGATATAGCT
* *
58028279 ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTT
*
58028344 AGCCCGG-TTATAGTA
65 AGCCCGGAAT-TAGTA
* *
58028359 ACTTGCACAAATGCCTTC-GGACTTATCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTA
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTA
* *
58028423 GCTCGGAATTAGTC
66 GCCCGGAATTAGTA
*
58028437 ACTAGCACAAATTCCTTCGGGACTTAGCCCGG
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
58028469 GTATCAATCC
Statistics
Matches: 98, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 29 0.30
79 53 0.54
80 16 0.16
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTA
GCCCGGAATTAGTA
Found at i:58029430 original size:43 final size:43
Alignment explanation
Indices: 58029287--58029410 Score: 194
Period size: 43 Copynumber: 2.9 Consensus size: 43
58029277 TTTATTGGAA
* *
58029287 AAAAACGCTGCTAAAGGTCAAGGCTTTTAGCGACGCTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGACGCTTGTGGG
* *
58029330 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGTGGCGCTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGACGCTTGTGGG
* *
58029373 AAAAGCGCCGCTAAACGTCAAGGCTGTTAGCGACGCTT
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGACGCTT
58029411 TTTTTACAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.22
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGACGCTTGTGGG
Found at i:58035496 original size:29 final size:31
Alignment explanation
Indices: 58035461--58035546 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 31
58035451 CGTAAACTAG
58035461 TTATGTATGATATGATATATATTTA-AG-TA
1 TTATGTATGATATGATATATATTTATAGTTA
* * *
58035490 TTATGTAAGTTATG-TAT-TATGTATAGTTA
1 TTATGTATGATATGATATATATTTATAGTTA
*
58035519 TGTAATTTATGATATGATATATATTTAT
1 T-T-ATGTATGATATGATATATATTTAT
58035547 GTAAATTATA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
27 5 0.11
28 5 0.11
29 15 0.34
30 1 0.02
31 9 0.20
32 3 0.07
33 6 0.14
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (31 bp):
TTATGTATGATATGATATATATTTATAGTTA
Found at i:58035504 original size:9 final size:9
Alignment explanation
Indices: 58035490--58035732 Score: 154
Period size: 9 Copynumber: 26.6 Consensus size: 9
58035480 TATTTAAGTA
58035490 TTATGTAAG
1 TTATGTAAG
58035499 TTATGT-A-
1 TTATGTAAG
58035506 TTATGTATAG
1 TTATGTA-AG
*
58035516 TTATGTAAT
1 TTATGTAAG
*
58035525 TTATGATATG
1 TTATG-TAAG
* * *
58035535 ATATAT-AT
1 TTATGTAAG
*
58035543 TTATGTAAA
1 TTATGTAAG
* *
58035552 TTATAT-AT
1 TTATGTAAG
*
58035560 TTATCTAAG
1 TTATGTAAG
*
58035569 TTATATAAG
1 TTATGTAAG
58035578 TTATGTAAG
1 TTATGTAAG
*
58035587 TTATGTAAA
1 TTATGTAAG
*
58035596 TTATGATATAAAA
1 TTATG---T-AAG
*
58035609 TATATTTAAG
1 T-TATGTAAG
58035619 TATTATGTAAG
1 --TTATGTAAG
58035630 TTATGTAAG
1 TTATGTAAG
* *
58035639 TTATAT-AT
1 TTATGTAAG
*
58035647 TTATCTAAG
1 TTATGTAAG
*
58035656 TTATATAAG
1 TTATGTAAG
*
58035665 TTATATAAG
1 TTATGTAAG
*
58035674 TTATGTATG
1 TTATGTAAG
*
58035683 TTATATAAG
1 TTATGTAAG
58035692 TTATGTAAG
1 TTATGTAAG
* *
58035701 TTATATATG
1 TTATGTAAG
*
58035710 TTATATAAG
1 TTATGTAAG
*
58035719 TTATGTAAA
1 TTATGTAAG
58035728 TTATG
1 TTATG
58035733 ATATCAAATA
Statistics
Matches: 185, Mismatches: 35, Indels: 28
0.75 0.14 0.11
Matches are distributed among these distances:
7 6 0.03
8 17 0.09
9 131 0.71
10 14 0.08
11 8 0.04
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:58035519 original size:17 final size:16
Alignment explanation
Indices: 58035487--58035763 Score: 83
Period size: 18 Copynumber: 15.9 Consensus size: 16
58035477 ATATATTTAA
58035487 GTATTATGTAAGTTAT
1 GTATTATGTAAGTTAT
58035503 GTATTATGTATAGTTAT
1 GTATTATGTA-AGTTAT
* *
58035520 GTAATTTATGATATGATAT
1 GT-A-TTATG-TAAGTTAT
* *
58035539 ATATTTATGTAAATTAT
1 GTA-TTATGTAAGTTAT
* *
58035556 ATATTTATCTAAGTTAT
1 GTA-TTATGTAAGTTAT
*
58035573 ATAAGTTATGTAAGTTAT
1 GT-A-TTATGTAAGTTAT
* *
58035591 GTAAATTATG-ATA-TAAA
1 GT--ATTATGTA-AGTTAT
* *
58035608 ATA-TATTTAAGTATTAT
1 GTATTATGTAAG--TTAT
58035625 GTAAGTTATGTAAGTTAT
1 GT-A-TTATGTAAGTTAT
* *
58035643 ATATTTATCTAAGTTAT
1 GTA-TTATGTAAGTTAT
* *
58035660 ATAAGTTATATAAGTTAT
1 GT-A-TTATGTAAGTTAT
*
58035678 GTATGTTATATAAGTTAT
1 GTA--TTATGTAAGTTAT
* *
58035696 GTAAGTTATATATGTTAT
1 GT-A-TTATGTAAGTTAT
* *
58035714 ATAAGTTATGTAAATTAT
1 GT-A-TTATGTAAGTTAT
* ** *
58035732 GATATCAAATATATTTAT
1 G-TATTATGTA-AGTTAT
58035750 GTATTATGTAAGTT
1 GTATTATGTAAGTT
58035764 TTTTATTTCA
Statistics
Matches: 203, Mismatches: 39, Indels: 38
0.73 0.14 0.14
Matches are distributed among these distances:
14 4 0.02
15 2 0.01
16 13 0.06
17 63 0.31
18 98 0.48
19 14 0.07
20 9 0.04
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (16 bp):
GTATTATGTAAGTTAT
Found at i:58035857 original size:15 final size:15
Alignment explanation
Indices: 58035837--58035890 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
58035827 AAGTAGCGGG
58035837 ATTAAATAATATTTA
1 ATTAAATAATATTTA
58035852 ATTAAATAATATTT-
1 ATTAAATAATATTTA
58035866 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
58035881 ATTAAATAAT
1 ATTAAATAAT
58035891 TACATGTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
12 2 0.06
13 6 0.18
14 4 0.12
15 15 0.44
16 5 0.15
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:58036094 original size:24 final size:24
Alignment explanation
Indices: 58036066--58036133 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
58036056 ACTTAAATGG
58036066 TAAAACGGACGATAATATTTGTAA
1 TAAAACGGACGATAATATTTGTAA
*
58036090 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTAA
*
58036114 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
58036134 CAATAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.95
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTAA
Found at i:58037444 original size:369 final size:372
Alignment explanation
Indices: 58036221--58038700 Score: 4699
Period size: 370 Copynumber: 6.7 Consensus size: 372
58036211 AATTGAAACA
58036221 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
58036286 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
58036351 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTTAG
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTTAG
58036416 AAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATAT
196 AAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATAT
58036481 AATAATATC-AAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
261 AATAATATCAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
58036545 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
58036592 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
58036657 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
58036722 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAAC-TTTTAG
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTTAG
58036786 AAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATAT
196 AAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATAT
*
58036850 AATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
261 AATAATATCAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
58036915 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
58036962 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
58037027 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
58037092 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGAT-AAAAGTAGTTATAAC-TTTTAG
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTTAG
58037155 AAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATAT
196 AAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATAT
*
58037220 AATAATATCAAAAAAGAATCGTAGTTTAA-TTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
261 AATAATATCAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
58037284 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
58037331 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
58037396 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
58037461 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAAC-TTTTAG
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTTAG
58037525 AAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATAT
196 AAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATAT
58037589 AATAATATCAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
261 AATAATATCAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
58037654 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
58037701 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
58037766 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
58037831 AATAAGGTTGGAGAAAAGATCAGCTATTGTTGTAATTTTTGATAAAAAGTAGTTATAACTTTTGT
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAA-TTTTGATAAAAAGTAGTTATAACTTTT-T
*
58037896 AGAAATTTAAAAATATTAAATACTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAAT
194 AGAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAAT
58037961 AT-ATAATATC-AAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTA
259 ATAATAATATCAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTA
58038024 TATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
324 TATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
*
58038073 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATTCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
*
58038138 TAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
58038203 AATAATGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTGTA
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTT-TA
58038268 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATA
195 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
*
58038332 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGG-AATAAATTAAGGTTAT
260 TAATAATATCAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
58038396 A-AAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
325 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
58038443 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC-CCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
58038507 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT-AAATATTT-A
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
58038570 AATAATGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTGTA
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTT-TA
58038635 GAAATTTAAAAA-ATTAAATATTAAAAT-AAACATTATTAATATAAAAAAAATAGTAATTTGAAT
195 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAAATAGTAATTTGAAT
58038698 ATA
259 ATA
58038701 NGAGAGTACC
Statistics
Matches: 2083, Mismatches: 14, Indels: 28
0.98 0.01 0.01
Matches are distributed among these distances:
365 15 0.01
366 15 0.01
367 100 0.05
368 8 0.00
369 474 0.23
370 787 0.38
371 308 0.15
372 302 0.14
373 53 0.03
374 21 0.01
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (372 bp):
TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTTAG
AAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATAT
AATAATATCAAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
Found at i:58037639 original size:739 final size:742
Alignment explanation
Indices: 58036221--58038700 Score: 4743
Period size: 739 Copynumber: 3.4 Consensus size: 742
58036211 AATTGAAACA
58036221 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
58036286 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
58036351 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTT-TA
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTGTA
58036415 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
58036480 TAATAATATCAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
261 TAATAATATCAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
58036545 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATT
326 TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATT
58036610 CATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAA
391 CATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAA
58036675 CCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAG
456 CCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAG
*
58036740 GTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAGAAATTTAAAAATATTAAAT
521 ATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAGAAATTTAAAAATATTAAAT
58036805 ATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATCAAAAAAGAATC
586 ATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATCAAAAAAGAATC
58036870 GTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATG
651 GTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATG
58036935 AGCTCGATAGAACTTTTTTCAAGTCTT
716 AGCTCGATAGAACTTTTTTCAAGTCTT
58036962 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
58037027 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
58037092 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGAT-AAAAGTAGTTATAAC-TTT-TA
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTGTA
58037154 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
*
58037219 TAATAATATCAAAAAAGAATCGTAGTTTAA-TTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
261 TAATAATATC-AAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
58037283 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
325 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
58037348 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
390 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
58037413 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
455 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
58037478 GATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAGAAATTTAAAAATATTAAA
520 GATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAGAAATTTAAAAATATTAAA
58037543 TATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATCAAAAAAGAAT
585 TATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATCAAAAAAGAAT
*
58037608 CATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAAT
650 CGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAAT
58037673 GAGCTCGATAGAACTTTTTTCAAGTCTT
715 GAGCTCGATAGAACTTTTTTCAAGTCTT
58037701 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
58037766 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
58037831 AATAAGGTTGGAGAAAAGATCAGCTATTGTTGTAATTTTTGATAAAAAGTAGTTATAACTTTTGT
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAA-TTTTGATAAAAAGTAGTTATAACTTTTGT
*
58037896 AGAAATTTAAAAATATTAAATACTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAAT
195 AGAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAAT
58037961 AT-ATAATATCAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
260 ATAATAATATCAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
58038025 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
325 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
* *
58038090 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATTCATTATATCTTGTAGCTCGATATAAGGCA
390 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
*
58038155 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAATGTTGGAGAGAA
455 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
58038220 GATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTGTAGAAATTTAAAAATATTA
520 GATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAAC-TTT-TAGAAATTTAAAAATATTA
58038285 AATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATCAAAAAAGA
583 AATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATCAAAAAAGA
58038350 ATCGTAGTTTAATTTTTATAAGTAAATTGG-AATAAATTAAGGTTATA-AAATATTCAATAGTAA
648 ATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAA
58038413 ATGAGCTCGATAGAACTTTTTTCAAGTCTT
713 ATGAGCTCGATAGAACTTTTTTCAAGTCTT
58038443 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTAC-CCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
58038507 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTT-AAATATTT-A
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
58038570 AATAATGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTGTA
131 AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTGTA
58038635 GAAATTTAAAAA-ATTAAATATTAAAAT-AAACATTATTAATATAAAAAAAATAGTAATTTGAAT
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAAATAGTAATTTGAAT
58038698 ATA
260 ATA
58038701 NGAGAGTACC
Statistics
Matches: 1716, Mismatches: 13, Indels: 23
0.98 0.01 0.01
Matches are distributed among these distances:
736 15 0.01
737 36 0.02
738 42 0.02
739 728 0.42
740 48 0.03
741 284 0.17
742 363 0.21
743 87 0.05
744 113 0.07
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (742 bp):
TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
AATAAGGTTGGAGAGAAGATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTGTA
GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
TAATAATATCAAAAAGAATCATAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
TAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATT
CATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAA
CCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAG
ATCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAGAAATTTAAAAATATTAAAT
ATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAATATCAAAAAAGAATC
GTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATG
AGCTCGATAGAACTTTTTTCAAGTCTT
Found at i:58042128 original size:54 final size:51
Alignment explanation
Indices: 58042016--58042202 Score: 226
Period size: 48 Copynumber: 3.7 Consensus size: 51
58042006 TGCATAATAA
* * *
58042016 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCACATATCA--
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCATT
*
58042065 -ATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC-AT--T
* * *
58042118 GATGCCAATGCCATGTCCCAAACATCGTCTTATC-TGGGATTAC--AT-ATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTA-CATGGGATCACATATCATT
58042166 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
58042203 TGTAACACCC
Statistics
Matches: 122, Mismatches: 8, Indels: 17
0.83 0.05 0.12
Matches are distributed among these distances:
47 1 0.01
48 79 0.65
49 1 0.01
50 2 0.02
52 2 0.02
54 36 0.30
55 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (51 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCATT
Found at i:58042189 original size:102 final size:102
Alignment explanation
Indices: 58042016--58042202 Score: 277
Period size: 102 Copynumber: 1.8 Consensus size: 102
58042006 TGCATAATAA
* * * *
58042016 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCACATATCAATGCCAATGCCATGTC
1 GATGCCAATGCCATATCCCAAACATCGTCTTACATGGGATCACATATCAATGCCAATGCCATGTC
*
58042081 CTAGACATGGTCTTACATGGGATCACATATCGATGCT
66 CCAGACATGGTCTTACATGGGATCACATATCGATGCT
* * **
58042118 GATGCCAATGCCATGTCCCAAACATCGTCTTATC-TGGGATTACATATTGATGCCAATGCCATGT
1 GATGCCAATGCCATATCCCAAACATCGTCTTA-CATGGGATCACATATCAATGCCAATGCCATGT
58042182 CCCAGACATGGTCTTACATGG
65 CCCAGACATGGTCTTACATGG
58042203 TGTAACACCC
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
102 74 0.99
103 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (102 bp):
GATGCCAATGCCATATCCCAAACATCGTCTTACATGGGATCACATATCAATGCCAATGCCATGTC
CCAGACATGGTCTTACATGGGATCACATATCGATGCT
Found at i:58043316 original size:27 final size:27
Alignment explanation
Indices: 58043248--58043318 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
58043238 CGACTTGTAA
* *
58043248 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
58043275 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
58043302 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
58043319 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:58043325 original size:27 final size:27
Alignment explanation
Indices: 58043302--58043425 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
58043292 CAATTTACAG
58043302 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
58043329 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
58043356 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
58043383 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
58043410 AATTACTAAAATACCC
1 AATTACCAAAATACCC
58043426 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:58043344 original size:54 final size:53
Alignment explanation
Indices: 58043286--58043425 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
58043276 ATTACCGTTT
58043286 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
58043340 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
58043394 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
58043426 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:58043437 original size:81 final size:81
Alignment explanation
Indices: 58043302--58043454 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
58043292 CAATTTACAG
* **
58043302 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
58043367 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
58043383 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
58043446 AATACCCTT
64 AATACCCTT
58043455 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:58043438 original size:27 final size:27
Alignment explanation
Indices: 58043408--58043469 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
58043398 CATGGTTTGA
58043408 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
58043435 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
58043462 AAAATTAC
1 AAAATTAC
58043470 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:58043438 original size:54 final size:54
Alignment explanation
Indices: 58043302--58043452 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
58043292 CAATTTACAG
* ** * * *
58043302 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
58043356 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
58043410 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
58043453 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:58044122 original size:28 final size:28
Alignment explanation
Indices: 58044089--58044173 Score: 152
Period size: 28 Copynumber: 3.0 Consensus size: 28
58044079 GCGTAGATCA
58044089 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58044117 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58044145 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
58044173 C
1 C
58044174 AATATACCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:58047463 original size:27 final size:27
Alignment explanation
Indices: 58047395--58047465 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
58047385 CGACTTGTAA
* *
58047395 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
58047422 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
58047449 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
58047466 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:58047472 original size:27 final size:27
Alignment explanation
Indices: 58047449--58047572 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
58047439 CAATTTACAG
58047449 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
58047476 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
58047503 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
58047530 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
58047557 AATTACTAAAATACCC
1 AATTACCAAAATACCC
58047573 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:58047491 original size:54 final size:53
Alignment explanation
Indices: 58047433--58047572 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
58047423 ATTACCGTTT
58047433 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
58047487 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
58047541 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
58047573 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:58047584 original size:81 final size:81
Alignment explanation
Indices: 58047449--58047601 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
58047439 CAATTTACAG
* **
58047449 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
58047514 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
58047530 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
58047593 AATACCCTT
64 AATACCCTT
58047602 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:58047585 original size:27 final size:27
Alignment explanation
Indices: 58047555--58047616 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
58047545 CATGGTTTGA
58047555 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
58047582 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
58047609 AAAATTAC
1 AAAATTAC
58047617 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:58047585 original size:54 final size:54
Alignment explanation
Indices: 58047449--58047599 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
58047439 CAATTTACAG
* ** * * *
58047449 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
58047503 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
58047557 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
58047600 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:58048270 original size:28 final size:28
Alignment explanation
Indices: 58048237--58048333 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
58048227 GCGTAGATCA
58048237 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58048265 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58048293 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
58048321 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
58048334 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:58051611 original size:27 final size:27
Alignment explanation
Indices: 58051543--58051613 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
58051533 CGACTTGTAA
* *
58051543 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
58051570 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
58051597 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
58051614 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:58051620 original size:27 final size:27
Alignment explanation
Indices: 58051597--58051720 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
58051587 CAATTTACAG
58051597 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
58051624 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
58051651 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
58051678 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
58051705 AATTACTAAAATACCC
1 AATTACCAAAATACCC
58051721 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:58051639 original size:54 final size:53
Alignment explanation
Indices: 58051581--58051720 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
58051571 ATTACCGTTT
58051581 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
58051635 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
58051689 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
58051721 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:58051732 original size:81 final size:81
Alignment explanation
Indices: 58051597--58051749 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
58051587 CAATTTACAG
* **
58051597 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
58051662 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
58051678 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
58051741 AATACCCTT
64 AATACCCTT
58051750 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:58051733 original size:27 final size:27
Alignment explanation
Indices: 58051703--58051764 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
58051693 CATGGTTTGA
58051703 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
58051730 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
58051757 AAAATTAC
1 AAAATTAC
58051765 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:58051733 original size:54 final size:54
Alignment explanation
Indices: 58051597--58051747 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
58051587 CAATTTACAG
* ** * * *
58051597 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
58051651 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
58051705 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
58051748 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:58052417 original size:28 final size:28
Alignment explanation
Indices: 58052384--58052468 Score: 152
Period size: 28 Copynumber: 3.0 Consensus size: 28
58052374 GCGTAGATCA
58052384 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58052412 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58052440 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
58052468 C
1 C
58052469 AATATACCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:58055758 original size:27 final size:27
Alignment explanation
Indices: 58055690--58055760 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
58055680 CGACTTGTAA
* *
58055690 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
58055717 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
58055744 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
58055761 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:58055767 original size:27 final size:27
Alignment explanation
Indices: 58055744--58055867 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
58055734 CAATTTACAG
58055744 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
58055771 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
58055798 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
58055825 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
58055852 AATTACTAAAATACCC
1 AATTACCAAAATACCC
58055868 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:58055786 original size:54 final size:53
Alignment explanation
Indices: 58055728--58055867 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
58055718 ATTACCGTTT
58055728 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
58055782 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
58055836 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
58055868 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:58055879 original size:81 final size:81
Alignment explanation
Indices: 58055744--58055896 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
58055734 CAATTTACAG
* **
58055744 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
58055809 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
58055825 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGGT-GGGTAAAATTACTAA
58055888 AATACCCTT
64 AATACCCTT
58055897 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:58055880 original size:27 final size:27
Alignment explanation
Indices: 58055850--58055911 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
58055840 CATGGTTTGA
58055850 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
58055877 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
58055904 AAAATTAC
1 AAAATTAC
58055912 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:58055880 original size:54 final size:54
Alignment explanation
Indices: 58055744--58055894 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
58055734 CAATTTACAG
* ** * * *
58055744 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
58055798 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
58055852 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
58055895 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:58056565 original size:28 final size:28
Alignment explanation
Indices: 58056532--58056628 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
58056522 GCGTAGATCA
58056532 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58056560 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58056588 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
58056616 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
58056629 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:58062295 original size:40 final size:40
Alignment explanation
Indices: 58062247--58062411 Score: 237
Period size: 40 Copynumber: 4.2 Consensus size: 40
58062237 GGACTAAGAT
*
58062247 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
58062287 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
58062326 CCGAAGGCATTTGTGCTAGTGACTATGTCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
58062366 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
58062405 CCGAAGG
1 CCGAAGG
58062412 TACTTGGGTT
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 51 0.44
40 62 0.54
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:58062392 original size:79 final size:79
Alignment explanation
Indices: 58062235--58062411 Score: 250
Period size: 79 Copynumber: 2.2 Consensus size: 79
58062225 CGAATGATAA
* * * *
58062235 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTCCCGAAGGCATTCG
*
58062300 TGCTAGTGACTATAT
65 TGCGAGTGACTATAT
*
58062315 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATGTCCAGGCTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTCCCGAAGGCATTCGT
58062380 GCGAGTTG-CTATAT
66 GCGAG-TGACTATAT
*
58062394 CC-GGCTAAATTCCGAAGG
1 CCGGGCT-AAGTCCGAAGG
58062412 TACTTGGGTT
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
78 4 0.05
79 73 0.83
80 11 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTCCCGAAGGCATTCGT
GCGAGTGACTATAT
Found at i:58070180 original size:40 final size:40
Alignment explanation
Indices: 58070132--58070337 Score: 290
Period size: 40 Copynumber: 5.2 Consensus size: 40
58070122 GGACTAAGAT
*
58070132 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
58070172 CCGAAGGCATTTGTGCTAGTGATTATATACGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
58070212 CCGAAGGCATTTGTGCTAGTGACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
58070252 CCGAAGGCATTTGTGCTAGTGACTATGTCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * * *
58070292 CCAAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
58070331 CCGAAGG
1 CCGAAGG
58070338 TACTTGGGTT
Statistics
Matches: 151, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.09
40 136 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:58075296 original size:93 final size:93
Alignment explanation
Indices: 58075183--58075354 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
58075173 CGCCCATAAG
* * * *
58075183 CGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
58075248 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
58075276 CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
58075341 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
58075355 TCAACTATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:58075351 original size:46 final size:46
Alignment explanation
Indices: 58075176--58075351 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
58075166 TGTAACCCGC
* * * *
58075176 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
58075222 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
58075272 -C-TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
58075315 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
58075352 TGCTCAACTA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:58079996 original size:24 final size:24
Alignment explanation
Indices: 58079961--58080061 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
58079951 CCAACACTGT
* *
58079961 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
58079985 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
58080009 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* *
58080033 TATCCCTTATAAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
58080057 TCTCC
1 TCTCC
58080062 TGACAGACTT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.26, C:0.40, G:0.02, T:0.33
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:58086287 original size:26 final size:26
Alignment explanation
Indices: 58086257--58086367 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
58086247 AGCATTGCTG
* *
58086257 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
58086283 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
*
58086310 CCAGAACAAATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
** *
58086337 CCAGATTAGATAAATGTGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAGAGCCA
58086364 CCAG
1 CCAG
58086368 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 13 0.17
27 60 0.80
28 2 0.03
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:58087765 original size:24 final size:24
Alignment explanation
Indices: 58087725--58087801 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
58087715 CCAACACTGT
*
58087725 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
58087749 TCTTCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
58087773 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
58087797 TCTCC
1 TCTCC
58087802 TAACAGACTT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.23, C:0.40, G:0.03, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:58092533 original size:6 final size:6
Alignment explanation
Indices: 58092515--58092602 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
58092505 AAGAAACATT
* *
58092515 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
58092564 ATCAAA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
58092603 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:58092562 original size:31 final size:31
Alignment explanation
Indices: 58092524--58092602 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
58092514 TATCAGAACT
* *
58092524 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
58092555 AGAATCAGAATCAAAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
58092586 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
58092603 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:58093062 original size:27 final size:27
Alignment explanation
Indices: 58093022--58093248 Score: 312
Period size: 27 Copynumber: 8.4 Consensus size: 27
58093012 TACCTCACAA
* *
58093022 GGTATCTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
58093049 AGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
58093076 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
58093103 GGTATTTCAGAAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
58093130 GGTATTTCGGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
58093156 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
58093183 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
58093210 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
58093237 GGTATTTCGGTA
1 GGTATTTCGGTA
58093249 TTATACAAAT
Statistics
Matches: 176, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 23 0.13
27 153 0.87
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:58093213 original size:107 final size:108
Alignment explanation
Indices: 58093022--58093248 Score: 334
Period size: 107 Copynumber: 2.1 Consensus size: 108
58093012 TACCTCACAA
* * *
58093022 GGTATCTCGATAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCCTACAGGAGTATTGCAGTAATTCTACCCTACAGGGGTATTTCGGT
* *
58093087 ATTTCTACCCTACAAGGGTATTTCAGA-AATTCTACCCTACAGG
66 AATTCTACCCTACAAGGGTATTGC-GATAATTCTACCCTACAGG
*
58093130 GGTATTTCGGTAATTCTACCCTACAGG-GTATTGC-GATAATTCTACCCTATAGGGGTATTTCGG
1 GGTATTTCGGTAATTCTACCCTACAGGAGTATTGCAG-TAATTCTACCCTACAGGGGTATTTCGG
* * *
58093193 TAATTCTACCCTATAGGGGTATTGCGATAATTCTACCCTATAGG
65 TAATTCTACCCTACAAGGGTATTGCGATAATTCTACCCTACAGG
58093237 GGTATTTCGGTA
1 GGTATTTCGGTA
58093249 TTATACAAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
106 3 0.03
107 80 0.74
108 25 0.23
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (108 bp):
GGTATTTCGGTAATTCTACCCTACAGGAGTATTGCAGTAATTCTACCCTACAGGGGTATTTCGGT
AATTCTACCCTACAAGGGTATTGCGATAATTCTACCCTACAGG
Found at i:58093294 original size:107 final size:107
Alignment explanation
Indices: 58093076--58093304 Score: 243
Period size: 107 Copynumber: 2.1 Consensus size: 107
58093066 ACCCTACAGG
* *
58093076 GGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGAAATTCTACCCTACAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTGCAGAAATTCTACCCTACAGGGGTATTTCGGT
* ** * ** *
58093141 AATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAGG
66 AATTATACAATACAGAGTATTGCGATAATTCTACCAAATAGA
* * *
58093183 GGTATTTCGGTAATTCTACCCTATAGGGGTATTGC-GATAATTCTACCCTATAGGGGTATTTCGG
1 GGTATTTCGGTAATTCTACCCTACAAGGGTATTGCAGA-AATTCTACCCTACAGGGGTATTTCGG
**
58093247 T-ATTATACAA-ATCGAGAGTATTTTGATAATT-T-CACAAATCAGA
65 TAATTATACAATA-C-AGAGTATTGCGATAATTCTAC-CAAAT-AGA
*
58093290 GGTATTTTGGTAATT
1 GGTATTTCGGTAATT
58093305 TTACAAGTCA
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
105 2 0.02
106 13 0.13
107 87 0.85
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (107 bp):
GGTATTTCGGTAATTCTACCCTACAAGGGTATTGCAGAAATTCTACCCTACAGGGGTATTTCGGT
AATTATACAATACAGAGTATTGCGATAATTCTACCAAATAGA
Found at i:58093365 original size:81 final size:81
Alignment explanation
Indices: 58093264--58093441 Score: 216
Period size: 81 Copynumber: 2.2 Consensus size: 81
58093254 CAAATCGAGA
* * *
58093264 GTATTTT-GATAATTTCACAAATCAGAGGTATTTTGGTAATTTTACA-AGTCAGGGGTATTTTAG
1 GTATTTTAG-TAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAGA-TCAAGGGTATTTTAG
*
58093327 TAATTTTACAAACCAGGG
64 TAATTTTACAAACCAAGG
* * *
58093345 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCAAGGGTATTTTGGTA
1 GTATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAGATCAAGGGTATTTTAGTA
** *
58093410 ATTTTGTAAACTAAGG
66 ATTTTACAAACCAAGG
* *
58093426 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
58093442 TTAAATCGAG
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 81 0.98
82 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (81 bp):
GTATTTTAGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAGATCAAGGGTATTTTAGTA
ATTTTACAAACCAAGG
Found at i:58093414 original size:27 final size:27
Alignment explanation
Indices: 58093234--58093414 Score: 213
Period size: 27 Copynumber: 6.7 Consensus size: 27
58093224 TCTACCCTAT
* *
58093234 AGGGGTATTTCGGT-ATTATACAAATC
1 AGGGGTATTTTGGTAATTTTACAAATC
* * *
58093260 -GAGAGTATTTTGATAATTTCACAAATC
1 AG-GGGTATTTTGGTAATTTTACAAATC
* *
58093287 AGAGGTATTTTGGTAATTTTACAAGTC
1 AGGGGTATTTTGGTAATTTTACAAATC
* *
58093314 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAATC
* *
58093341 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAATC
**
58093368 AGGGGTATTTTGGTAATTTTACTGATC
1 AGGGGTATTTTGGTAATTTTACAAATC
*
58093395 AAGGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTT
58093415 GTAAACTAAG
Statistics
Matches: 133, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
25 1 0.01
26 9 0.07
27 122 0.92
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAATC
Found at i:58093425 original size:27 final size:27
Alignment explanation
Indices: 58093264--58093431 Score: 158
Period size: 27 Copynumber: 6.2 Consensus size: 27
58093254 CAAATCGAGA
* * * * *
58093264 GTATTTTGATAATTTCACAAATCAGAG
1 GTATTTTGGTAATTTTATAAACCAGGG
* **
58093291 GTATTTTGGTAATTTTACAAGTCAGGG
1 GTATTTTGGTAATTTTATAAACCAGGG
* *
58093318 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTATAAACCAGGG
* *
58093345 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTATAAACCAGGG
* * *
58093372 GTATTTTGGTAATTTTACT-GATCAAGG
1 GTATTTTGGTAATTTTA-TAAACCAGGG
* * *
58093399 GTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTGGTAATTTTATAAACCAGGG
58093426 GTATTT
1 GTATTT
58093432 CAATAATTTT
Statistics
Matches: 123, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 122 0.99
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTTGGTAATTTTATAAACCAGGG
Found at i:58093465 original size:27 final size:26
Alignment explanation
Indices: 58093443--58093712 Score: 335
Period size: 27 Copynumber: 10.0 Consensus size: 26
58093433 AATAATTTTT
* *
58093443 TAAATCGAGGATAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAAC-GTAATTCTA
58093470 T-AATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAAC-GTAATTCTA
*
58093496 TAAATCGAGGGTAAAATGATAATTCTA
1 TAAATCGAGGGTAAAACG-TAATTCTA
* *
58093523 TAAATTGAGGGTAAAACGATAATTCTG
1 TAAATCGAGGGTAAAACG-TAATTCTA
*
58093550 TAAATCGAGGGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAA-CGTAATTCTA
58093577 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACG-TAATTCTA
*
58093604 TAAATCGAGGGTAAAACGATAATTCTG
1 TAAATCGAGGGTAAAACG-TAATTCTA
* * *
58093631 TAAATCGAGGGGAAAACAGTAATTTTG
1 TAAATCGAGGGTAAAAC-GTAATTCTA
*
58093658 TAAATTGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAAC-GTAATTCTA
*
58093685 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAA-CGTAATTCTA
58093712 T
1 T
58093713 CTTATTTCAG
Statistics
Matches: 216, Mismatches: 21, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
26 25 0.12
27 189 0.88
28 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (26 bp):
TAAATCGAGGGTAAAACGTAATTCTA
Found at i:58093587 original size:81 final size:81
Alignment explanation
Indices: 58093434--58093710 Score: 405
Period size: 81 Copynumber: 3.4 Consensus size: 81
58093424 GGGTATTTCA
* * * *
58093434 ATAATTTTTTAAATCGAGGATAAAAC-AGTAATTCTGT-AATCGAGGGTAAAACGGTAATTCTAT
1 ATAATTCTATAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAT
*
58093497 AAATCGAGGGTAAAATG
65 AAATCGAGGGTAAAACG
* *
58093514 ATAATTCTATAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATA
1 ATAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
58093579 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * *
58093595 ATAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGGAAAACAGTAATTTTGTA
1 ATAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
58093660 AATTGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * *
58093676 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCT
1 ATAATTCTATAAATCGAGGGTAAAACGATAATTCT
58093711 ATCTTATTTC
Statistics
Matches: 179, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
80 31 0.17
81 148 0.83
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.29
Consensus pattern (81 bp):
ATAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:58093806 original size:27 final size:26
Alignment explanation
Indices: 58093715--58093809 Score: 75
Period size: 27 Copynumber: 3.5 Consensus size: 26
58093705 AATTCTATCT
* *
58093715 TATTTCAGTGATTTTACAAATTGAGG
1 TATTTCAGTAATTTTACAAATCGAGG
** * *
58093741 ATATTTGGGTAATTTTATAAATCGGGGG
1 -TATTTCAGTAATTTTACAAATC-GAGG
* *
58093769 TACTTT-GGTAATTTTACAAGTCGAAGG
1 TA-TTTCAGTAATTTTACAAATCG-AGG
58093796 TATTTCAGTAATTT
1 TATTTCAGTAATTT
58093810 GGTAAACTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
26 4 0.07
27 44 0.81
28 6 0.11
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.42
Consensus pattern (26 bp):
TATTTCAGTAATTTTACAAATCGAGG
Found at i:58095812 original size:7 final size:6
Alignment explanation
Indices: 58095781--58095869 Score: 67
Period size: 6 Copynumber: 14.3 Consensus size: 6
58095771 AAGAAACATT
* *
58095781 ATCAGA A-CTAGA ATCAGA ATCAGA ATTCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA A-TCAGA ATCAGA AT--CAGA ATCAGA
* *
58095831 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
58095870 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 18
0.72 0.09 0.20
Matches are distributed among these distances:
5 4 0.06
6 48 0.73
7 12 0.18
8 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:58096350 original size:53 final size:53
Alignment explanation
Indices: 58096287--58096509 Score: 319
Period size: 53 Copynumber: 4.2 Consensus size: 53
58096277 TACCTCACAA
* * *
58096287 GGTATCTCGGTAATTCTACCCTACAGGGTATTTC-AGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGTATTGCGA-TAATTCTACCCTATAGG
* *
58096340 GGTATTTCGGTATTTCTACCCTACAAGGGTATTTG-G-TAATTTTACCCTATA-G
1 GGTATTTCGGTAATTCTACCCTAC-AGGGTA-TTGCGATAATTCTACCCTATAGG
*
58096392 GGTATTTCGATAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAGG
*
58096445 GGTATTTCAGTAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAGG
*
58096498 GGTATTTTGGTA
1 GGTATTTCGGTA
58096510 TTATACAAAT
Statistics
Matches: 152, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
50 3 0.02
51 7 0.05
52 37 0.24
53 97 0.64
54 6 0.04
55 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (53 bp):
GGTATTTCGGTAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAGG
Found at i:58096386 original size:79 final size:80
Alignment explanation
Indices: 58096283--58096511 Score: 313
Period size: 79 Copynumber: 2.9 Consensus size: 80
58096273 ATTTTACCTC
*
58096283 ACAA-GGTATCTCGGTAATTCTACCCTACAGGGTATTTC-AGTAATTCTACCCTACAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATT
58096346 TCGGTATTTCTACCCT
65 TCGGTATTTCTACCCT
* * *
58096362 ACAAGGGTATTT-GGTAATTTTACCCTATAGGGTATTTCGATAATTCTACCCTACA-GGGTATTG
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
* *
58096425 CGATAATTCTACCCT
66 CGGTATTTCTACCCT
* * * * *
58096440 ATAGGGGTATTTCAGTAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAGGGGTATTT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
*
58096505 TGGTATT
66 CGGTATT
58096512 ATACAAATCG
Statistics
Matches: 129, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 30 0.23
79 81 0.63
80 18 0.14
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (80 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
CGGTATTTCTACCCT
Found at i:58096413 original size:105 final size:103
Alignment explanation
Indices: 58096268--58096504 Score: 316
Period size: 105 Copynumber: 2.3 Consensus size: 103
58096258 TAGGGCAAAA
* * * * *
58096268 TGGTAATTTTA-CCTCACAAGGTATCTCGGTAATTCTACCCTACAGGGTATTTC-AGTAATTCTA
1 TGGTAATTTTACCCT-ATAGGGTATTTCGATAATTCTACCCTACAGGGTATTGCGA-TAATTCTA
* *
58096331 CCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATT
64 CCCTACAGGGGTATTTCAGTAATTCTACCCTAC-AGGGTA-T
58096373 TGGTAATTTTACCCTATAGGGTATTTCGATAATTCTACCCTACAGGGTATTGCGATAATTCTACC
1 TGGTAATTTTACCCTATAGGGTATTTCGATAATTCTACCCTACAGGGTATTGCGATAATTCTACC
*
58096438 CTATAGGGGTATTTCAGTAATTCTACCCTACAGGGTAT
66 CTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTAT
*
58096476 TGCGATAATTCTACCCTATAGGGGTATTT
1 TG-G-TAATTTTACCCTATA-GGGTATTT
58096505 TGGTATTATA
Statistics
Matches: 118, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
103 3 0.03
104 7 0.06
105 96 0.81
106 12 0.10
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (103 bp):
TGGTAATTTTACCCTATAGGGTATTTCGATAATTCTACCCTACAGGGTATTGCGATAATTCTACC
CTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTAT
Found at i:58096498 original size:26 final size:26
Alignment explanation
Indices: 58096287--58096504 Score: 262
Period size: 26 Copynumber: 8.3 Consensus size: 26
58096277 TACCTCACAA
* *
58096287 GGTATCTCGGTAATTCTACCCTACAG
1 GGTATTTCGATAATTCTACCCTACAG
58096313 GGTATTTC-AGTAATTCTACCCTACAGG
1 GGTATTTCGA-TAATTCTACCCTACA-G
* *
58096340 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGATAATTCTACCCTAC-AG
* * *
58096367 GGTATTT-GGTAATTTTACCCTATAG
1 GGTATTTCGATAATTCTACCCTACAG
58096392 GGTATTTCGATAATTCTACCCTACAG
1 GGTATTTCGATAATTCTACCCTACAG
* *
58096418 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGATAATTCTACCCTACA-G
58096445 GGTATTTC-AGTAATTCTACCCTACAG
1 GGTATTTCGA-TAATTCTACCCTACAG
* *
58096471 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGATAATTCTACCCTACA-G
58096498 GGTATTT
1 GGTATTT
58096505 TGGTATTATA
Statistics
Matches: 166, Mismatches: 17, Indels: 17
0.83 0.09 0.09
Matches are distributed among these distances:
25 9 0.05
26 96 0.58
27 60 0.36
28 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (26 bp):
GGTATTTCGATAATTCTACCCTACAG
Found at i:58096538 original size:79 final size:77
Alignment explanation
Indices: 58096297--58096538 Score: 238
Period size: 79 Copynumber: 3.1 Consensus size: 77
58096287 GGTATCTCGG
**
58096297 TAATTCTACCCTACAGGGTATTTC-AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCGGTA-TTCTACAA
* *
58096361 TACAAGGGTATTTGG
64 T-CGAGGGTATTTGA
* * * * *
58096376 TAATTTTACCCTATAGGGTATTTCGATAATTCTACCCTACA-GGGTATTGCGATAATTCTACCCT
1 TAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGT-ATTCTA--CA
* *
58096440 ATAG-GGGTATTTCA
63 ATCGAGGGTATTTGA
* * * *
58096454 GTAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAGGGGTATTTTGGTATTATACAAA
1 -TAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTCTAC-AA
*
58096519 TCGAGAGTATTTTGA
64 TCGAGGGTA-TTTGA
58096534 TAATT
1 TAATT
58096539 TCACAAATCA
Statistics
Matches: 132, Mismatches: 22, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
77 1 0.01
78 26 0.20
79 89 0.67
80 16 0.12
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (77 bp):
TAATTCTACCCTACAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTCTACAATC
GAGGGTATTTGA
Found at i:58096555 original size:27 final size:27
Alignment explanation
Indices: 58096495--58096674 Score: 222
Period size: 27 Copynumber: 6.7 Consensus size: 27
58096485 TCTACCCTAT
*
58096495 AGGGGTATTTTGGT-ATTATACAAATC
1 AGGGGTATTTTGGTAATTTTACAAATC
* * *
58096521 -GAGAGTATTTTGATAATTTCACAAATC
1 AG-GGGTATTTTGGTAATTTTACAAATC
*
58096548 AGGGGTATTTTGGTAATTTTACAAGTC
1 AGGGGTATTTTGGTAATTTTACAAATC
* *
58096575 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAATC
* *
58096602 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAATC
**
58096629 AGGGGTATTTTGGTAATTTTACTGATC
1 AGGGGTATTTTGGTAATTTTACAAATC
*
58096656 -GAGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTT
58096675 GTAAACTAAG
Statistics
Matches: 135, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
25 1 0.01
26 28 0.21
27 105 0.78
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAATC
Found at i:58096725 original size:27 final size:27
Alignment explanation
Indices: 58096703--58096970 Score: 366
Period size: 27 Copynumber: 10.0 Consensus size: 27
58096693 AATAATTTTG
* *
58096703 TAAATCGAGGATAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTA
58096730 TAAATCGAGGGTAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
58096757 TAAATCGAGGGTAAAA-TGATAATTCTA
1 TAAATCGAGGGTAAAACAG-TAATTCTA
**
58096784 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
58096811 TAAATCGA-GGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
58096837 TAAATCGA-GGTAAAAC-GTAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
58096862 TAAATCGAGGGTAAAAC-GATAATTCTG
1 TAAATCGAGGGTAAAACAG-TAATTCTA
* *
58096889 TAAATCGAGGGTAAAACAGTAATTTTG
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
58096916 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
**
58096943 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
58096970 T
1 T
58096971 CTTATTTCAG
Statistics
Matches: 224, Mismatches: 12, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
25 16 0.07
26 42 0.19
27 164 0.73
28 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACAGTAATTCTA
Found at i:58097013 original size:27 final size:25
Alignment explanation
Indices: 58096983--58097066 Score: 87
Period size: 27 Copynumber: 3.2 Consensus size: 25
58096973 TATTTCAGTG
58096983 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* *
58097010 ATTTTATAAATCGGGGTACTTTGGTA
1 ATTTTACAAATCGAGGTA-TTTGGTA
* *
58097036 ATTTTACAAGTCGAAGGTATTTCAGTA
1 ATTTTACAAATCG-AGGTATTT-GGTA
58097063 ATTT
1 ATTT
58097067 GGTAAACTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
26 20 0.42
27 28 0.58
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:58099049 original size:6 final size:6
Alignment explanation
Indices: 58099031--58099118 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
58099021 AAGAAACATT
* *
58099031 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
58099080 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
58099119 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:58099076 original size:31 final size:31
Alignment explanation
Indices: 58099040--58099118 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
58099030 TATCAGAACT
* *
58099040 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
58099071 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
58099102 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
58099119 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:58099576 original size:27 final size:26
Alignment explanation
Indices: 58099537--58099756 Score: 264
Period size: 27 Copynumber: 8.3 Consensus size: 26
58099527 TACCTCACAA
*
58099537 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTC-GTAATTCTACCCTACAGG
58099564 GGTATTTCAGTAATTCTACCCTACA-G
1 GGTATTTC-GTAATTCTACCCTACAGG
* *
58099590 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTC-GTAATTCTACCCTACAGG
* * *
58099617 GGTATTTGGTAATTTTACCCTATAGG
1 GGTATTTCGTAATTCTACCCTACAGG
58099643 GGTATTTCGATAATTCTACCCTACA-G
1 GGTATTTCG-TAATTCTACCCTACAGG
* *
58099669 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCG-TAATTCTACCCTACAGG
*
58099696 GGTATTTCAGTAATTCTACCCTACACG
1 GGTATTTC-GTAATTCTACCCTACAGG
* *
58099723 GGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCG-TAATTCTACCCTACAGG
58099750 GGTATTT
1 GGTATTT
58099757 TGGTATTATA
Statistics
Matches: 167, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
26 71 0.43
27 95 0.57
28 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (26 bp):
GGTATTTCGTAATTCTACCCTACAGG
Found at i:58099577 original size:53 final size:52
Alignment explanation
Indices: 58099537--58099761 Score: 281
Period size: 53 Copynumber: 4.2 Consensus size: 52
58099527 TACCTCACAA
*
58099537 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACA-G
1 GGTATTTCGGTAATTCTACCCTACA-GGGTATTTC-GTAATTCTACCCTACAGG
* * * *
58099590 GGTATTTCGGTATTTCTACCCTACAAGGGTATTTGGTAATTTTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTAC-AGGGTATTTCGTAATTCTACCCTACAGG
* * *
58099643 GGTATTTCGATAATTCTACCCTACAGGGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGGGTATTTCG-TAATTCTACCCTACAGG
* * *
58099696 GGTATTTCAGTAATTCTACCCTACACGGGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACA-GGGTATTTCG-TAATTCTACCCTACAGG
*
58099750 GGTATTTTGGTA
1 GGTATTTCGGTA
58099762 TTATACAAAT
Statistics
Matches: 154, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
52 23 0.15
53 92 0.60
54 39 0.25
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (52 bp):
GGTATTTCGGTAATTCTACCCTACAGGGTATTTCGTAATTCTACCCTACAGG
Found at i:58099807 original size:27 final size:27
Alignment explanation
Indices: 58099747--58099902 Score: 176
Period size: 27 Copynumber: 5.8 Consensus size: 27
58099737 TCTACCCTAT
* *
58099747 AGGGGTATTTTGGT-ATTATACAAATC
1 AGGGGTATTTTGATAATTTTACAAATC
* *
58099773 -GAGAGTATTTTGATAATTTCACAAATC
1 AG-GGGTATTTTGATAATTTTACAAATC
* *
58099800 AGGGGTATTTTGGTAATTTTACAAGTC
1 AGGGGTATTTTGATAATTTTACAAATC
*
58099827 AGGGGTATTTT-AGTAATTTTACAAACC
1 AGGGGTATTTTGA-TAATTTTACAAATC
*
58099854 AGGGGTATTTT-AGTAATTTTACAAACC
1 AGGGGTATTTTGA-TAATTTTACAAATC
*
58099881 AGGGGTATTTTGGTAATTTTAC
1 AGGGGTATTTTGATAATTTTAC
58099903 TGATCGAAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
25 1 0.01
26 10 0.09
27 101 0.89
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGATAATTTTACAAATC
Found at i:58099844 original size:54 final size:53
Alignment explanation
Indices: 58099747--58099927 Score: 206
Period size: 54 Copynumber: 3.4 Consensus size: 53
58099737 TCTACCCTAT
* * *
58099747 AGGGGTATTTTGGT-ATTATACAAATC-GAGAGTATTTTGATAATTTCACAAATC
1 AGGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTG-TAATTTTACAAATC
* *
58099800 AGGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTT-GTAATTTTACAAATC
* * **
58099854 AGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATC
1 AGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTT-GTAATTTTACAAATC
*
58099908 -GAAGGTATTTTGGTAATTTT
1 AG-GGGTATTTTGGTAATTTT
58099928 GTAAACTAAG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
53 15 0.14
54 93 0.85
55 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (53 bp):
AGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGTAATTTTACAAATC
Found at i:58099878 original size:81 final size:80
Alignment explanation
Indices: 58099747--58099902 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 80
58099737 TCTACCCTAT
* * *
58099747 AGGGGTATTTTGGTATTATACAAATCGAGAGTATTTTGATAATTTCACAAATCAGGGGTATTTTG
1 AGGGGTATTTTAGTATTATACAAACCGAGAGTATTTTGATAATTTCACAAACCAGGGGTATTTTG
58099812 GTAATTTTACAAGTC
66 GTAATTTTACAAGTC
* * *
58099827 AGGGGTATTTTAGTAATTTTACAAACC-AGGGGTATTTT-AGTAATTTTACAAACCAGGGGTATT
1 AGGGGTATTTTAGT-ATTATACAAACCGA-GAGTATTTTGA-TAATTTCACAAACCAGGGGTATT
58099890 TTGGTAATTTTAC
63 TTGGTAATTTTAC
58099903 TGATCGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
80 15 0.22
81 52 0.78
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (80 bp):
AGGGGTATTTTAGTATTATACAAACCGAGAGTATTTTGATAATTTCACAAACCAGGGGTATTTTG
GTAATTTTACAAGTC
Done.