Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 187 of 433
Found at i:58816244 original size:114 final size:114
Alignment explanation
Indices: 58816054--58816281 Score: 438
Period size: 114 Copynumber: 2.0 Consensus size: 114
58816044 ATCAAGCCTT
*
58816054 CCTACAATTGCTTATTAGGGAGGCCATGGATACACTCAGCGGGAGCGGTGCCCTCATCGTTGCAC
1 CCTACAATTGCTTATTAGGGAGGCCATGGATACACTCAGCGAGAGCGGTGCCCTCATCGTTGCAC
58816119 CAGAAATTAAAGTTAGTGACGGATGGACGGTTAGTAACCATCAATACGG
66 CAGAAATTAAAGTTAGTGACGGATGGACGGTTAGTAACCATCAATACGG
*
58816168 CCTACAATTTCTTATTAGGGAGGCCATGGATACACTCAGCGAGAGCGGTGCCCTCATCGTTGCAC
1 CCTACAATTGCTTATTAGGGAGGCCATGGATACACTCAGCGAGAGCGGTGCCCTCATCGTTGCAC
58816233 CAGAAATTAAAGTTAGTGACGGATGGACGGTTAGTAACCATCAATACGG
66 CAGAAATTAAAGTTAGTGACGGATGGACGGTTAGTAACCATCAATACGG
58816282 AGAAGGACAT
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (114 bp):
CCTACAATTGCTTATTAGGGAGGCCATGGATACACTCAGCGAGAGCGGTGCCCTCATCGTTGCAC
CAGAAATTAAAGTTAGTGACGGATGGACGGTTAGTAACCATCAATACGG
Found at i:58818590 original size:27 final size:27
Alignment explanation
Indices: 58818552--58818612 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
58818542 AAACTTGATC
58818552 CTTTGAAGTATATGATGGAGTTAACAG
1 CTTTGAAGTATATGATGGAGTTAACAG
58818579 CTTTGAAGTATATGATGGAGTTAACAG
1 CTTTGAAGTATATGATGGAGTTAACAG
58818606 CTTTGAA
1 CTTTGAA
58818613 TGGGAGAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.34
Consensus pattern (27 bp):
CTTTGAAGTATATGATGGAGTTAACAG
Found at i:58821712 original size:133 final size:131
Alignment explanation
Indices: 58821460--58821723 Score: 313
Period size: 133 Copynumber: 2.0 Consensus size: 131
58821450 CAGGCTAAAG
* * *
58821460 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGCA
*
58821525 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAG
58821590 A
131 A
* *
58821591 CATAGCAGATCTAACCTTC-GGATGTTTTTGCATTGAAGCAGATCCAAGATGATTTGGCATC-CT
1 CATAGCAGATCTAACCTTCAGG-TG--TTTACACTGAAGCAGATCCAAGATGATTTGGCATCTC-
* * * * ** *
58821654 TGCGTT-TACA-AGGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATT-GTCAGAGAGCAG
62 TGCATTGT-CAGA-GAACAAATCGAAGA-AACAGATTTGGCATCTCCATATTCGACAGAGAGCAG
58821716 ATCGAAGA
124 ATCGAAGA
58821724 TATTAGATTT
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
130 2 0.02
131 20 0.18
132 3 0.03
133 68 0.60
134 20 0.18
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (131 bp):
CATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGCA
TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAG
A
Found at i:58821714 original size:44 final size:45
Alignment explanation
Indices: 58821664--58821783 Score: 131
Period size: 44 Copynumber: 2.7 Consensus size: 45
58821654 TGCGTTTACA
58821664 AGGAGCAGATCGAAGATAGCAGATTTGGCATC-TCTGTATT-G-TC
1 AGGAGCAGATCGAAGATAGCAGATTTGGCATCTTC-GTATTCGATC
** * *
58821707 AGAGAGCAGATCGAAGATATTAGATTTGGAATCTTCGTATTCGATG
1 AG-GAGCAGATCGAAGATAGCAGATTTGGCATCTTCGTATTCGATC
* * *
58821753 AGGAGTAAATCCAAGA-AGCAGATTTGGCATC
1 AGGAGCAGATCGAAGATAGCAGATTTGGCATC
58821784 CCCGTATTTG
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
43 2 0.03
44 44 0.70
45 14 0.22
46 3 0.05
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (45 bp):
AGGAGCAGATCGAAGATAGCAGATTTGGCATCTTCGTATTCGATC
Found at i:58821790 original size:44 final size:44
Alignment explanation
Indices: 58821728--58821901 Score: 152
Period size: 44 Copynumber: 3.9 Consensus size: 44
58821718 CGAAGATATT
* * * *
58821728 AGATTTGGAATCTTCGTATTCGATGAGGAGTAAATCCAAGAAGC
1 AGATTTGGCATCTCCGTATTCGACGGGGAGTAAATCCAAGAAGC
* * ** *
58821772 AGATTTGGCATCCCCGTATTTGACGGGGAGTAGGTCCAAGATGAC
1 AGATTTGGCATCTCCGTATTCGACGGGGAGTAAATCCAAGAAG-C
* * *
58821817 AGATTTGGCATCTCCATATTCAACGGGGA-TCAAAACCAAGAAGC
1 AGATTTGGCATCTCCGTATTCGACGGGGAGT-AAATCCAAGAAGC
* ** * * * *
58821861 TGATTTGGCATCTCTATATTTGATGGGGAGCAAATCGAAGA
1 AGATTTGGCATCTCCGTATTCGACGGGGAGTAAATCCAAGA
58821902 CATAGTAGAT
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
44 68 0.67
45 34 0.33
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (44 bp):
AGATTTGGCATCTCCGTATTCGACGGGGAGTAAATCCAAGAAGC
Found at i:58821837 original size:89 final size:89
Alignment explanation
Indices: 58821728--58821890 Score: 202
Period size: 89 Copynumber: 1.8 Consensus size: 89
58821718 CGAAGATATT
* * * * * *
58821728 AGATTTGGAATCTTCGTATTCGATGAGGAGT-AAATCCAAGAAGCAGATTTGGCATCCCCGTATT
1 AGATTTGGAATCTCCATATTCAACGAGGA-TCAAAACCAAGAAGCAGATTTGGCATCCCCATATT
58821792 TGACGGGGAGTAGGTCCAAGATGAC
65 TGACGGGGAGTAGGTCCAAGATGAC
* * * * *
58821817 AGATTTGGCATCTCCATATTCAACGGGGATCAAAACCAAGAAGCTGATTTGGCATCTCTATATTT
1 AGATTTGGAATCTCCATATTCAACGAGGATCAAAACCAAGAAGCAGATTTGGCATCCCCATATTT
*
58821882 GATGGGGAG
66 GACGGGGAG
58821891 CAAATCGAAG
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
88 1 0.02
89 60 0.98
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (89 bp):
AGATTTGGAATCTCCATATTCAACGAGGATCAAAACCAAGAAGCAGATTTGGCATCCCCATATTT
GACGGGGAGTAGGTCCAAGATGAC
Found at i:58822018 original size:80 final size:79
Alignment explanation
Indices: 58821861--58822037 Score: 221
Period size: 80 Copynumber: 2.2 Consensus size: 79
58821851 ACCAAGAAGC
* * * * * **
58821861 TGATTT-GGCATCTCTATATTTGATGGGGAGCAAATCGAAGACATAGTAGATCTGACCTTTGTCA
1 TGATTTGGGCATCTCTGTAATGGACGGAGAGCAAATCGAAGACATAGTAGATCTGACCTTCATCA
58821925 AGGAAAATCCAAGA
66 AGGAAAATCCAAGA
*
58821939 TGATTTGGGTATCTCTGTAATGGACGGAGAGCAAATCGAAGACATTAGTAGATCTGACCTTCATC
1 TGATTTGGGCATCTCTGTAATGGACGGAGAGCAAATCGAAGACA-TAGTAGATCTGACCTTCATC
*** *
58822004 AAGGCTGATTCAAGA
65 AAGGAAAATCCAAGA
*
58822019 TGATTTGGGCGTCTCTGTA
1 TGATTTGGGCATCTCTGTA
58822038 TTCAATAGGG
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 6 0.07
79 31 0.37
80 46 0.55
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (79 bp):
TGATTTGGGCATCTCTGTAATGGACGGAGAGCAAATCGAAGACATAGTAGATCTGACCTTCATCA
AGGAAAATCCAAGA
Found at i:58822051 original size:80 final size:78
Alignment explanation
Indices: 58821886--58822060 Score: 206
Period size: 80 Copynumber: 2.2 Consensus size: 78
58821876 ATATTTGATG
** *
58821886 GGGAGCAAATCGAAGACATAGTAGATCTGACCTTTGTCAAGGAAAATCCAAGATGATTTGGGTAT
1 GGGAGCAAATCGAAGACATAGTAGATCTGACCTTCATCAAGGAAAATCCAAGATGATTTGGGCAT
** *
58821951 CTCTGTAATGGAC
66 CTCTGTAATCAAA
*** *
58821964 GGAGAGCAAATCGAAGACATTAGTAGATCTGACCTTCATCAAGGCTGATTCAAGATGATTTGGGC
1 GG-GAGCAAATCGAAGACA-TAGTAGATCTGACCTTCATCAAGGAAAATCCAAGATGATTTGGGC
* *
58822029 GTCTCTGTATTCAATA
64 ATCTCTGTAATCAA-A
*
58822045 GGGAGCAGATCGAAGA
1 GGGAGCAAATCGAAGA
58822061 ACTCAAGACT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
78 2 0.02
79 16 0.20
80 61 0.75
81 2 0.02
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (78 bp):
GGGAGCAAATCGAAGACATAGTAGATCTGACCTTCATCAAGGAAAATCCAAGATGATTTGGGCAT
CTCTGTAATCAAA
Found at i:58822208 original size:17 final size:17
Alignment explanation
Indices: 58822186--58822220 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
58822176 ACAAAAAATT
*
58822186 AAAAAATGAAATTAAAC
1 AAAAAATAAAATTAAAC
58822203 AAAAAATAAAATTAAAC
1 AAAAAATAAAATTAAAC
58822220 A
1 A
58822221 GTCCATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.17
Consensus pattern (17 bp):
AAAAAATAAAATTAAAC
Found at i:58826540 original size:28 final size:28
Alignment explanation
Indices: 58826475--58826575 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
58826465 TATAGTGATC
*
58826475 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
58826504 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
58826532 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
58826562 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58826576 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:58828336 original size:28 final size:28
Alignment explanation
Indices: 58828296--58828360 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
58828286 ATGTACTAGA
*
58828296 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
*
58828324 ATACCCCTATGTATGTAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
58828352 ATACCCCTA
1 ATACCCCTA
58828361 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:58828507 original size:28 final size:27
Alignment explanation
Indices: 58828467--58828539 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
58828457 GGAAGCGTCC
58828467 TGGTGGCTA-TGCCACAAATTATCTGTTA
1 TGGTGGC-ACTGCCACAAA-TATCTGTTA
* * * *
58828495 TGGTGGCCCTGCCGCATATATCTGTTC
1 TGGTGGCACTGCCACAAATATCTGTTA
58828522 TGGTGGCACTGCCACAAA
1 TGGTGGCACTGCCACAAA
58828540 ATATTTGTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.30
Consensus pattern (27 bp):
TGGTGGCACTGCCACAAATATCTGTTA
Found at i:58831518 original size:27 final size:27
Alignment explanation
Indices: 58831488--58831552 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
58831478 ACCCCTGGTT
58831488 TGTAAAATTACTGAAATACCCTCGACC
1 TGTAAAATTACTGAAATACCCTCGACC
* *
58831515 TGTAAAATTATTGAAATACCCTCGACT
1 TGTAAAATTACTGAAATACCCTCGACC
58831542 TGTAAAATTAC
1 TGTAAAATTAC
58831553 CAAAGTACCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTCGACC
Found at i:58831615 original size:27 final size:27
Alignment explanation
Indices: 58831459--58831616 Score: 95
Period size: 27 Copynumber: 5.9 Consensus size: 27
58831449 AATACTTTAG
* * *
58831459 TTTACCAAATTACCAAAATACCC-CTGG
1 TTTACAAAATTACCGAAATACCCTC-GA
** *
58831486 TTTGTAAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
** ** **
58831513 CCTGTAAAATTATTGAAATACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
* ** **
58831540 CTTGTAAAATTACC-AAAGTACCCTTAA
1 TTTACAAAATTACCGAAA-TACCCTCGA
* ***
58831567 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
58831594 TTTACAAAATTACCGAAATACCC
1 TTTACAAAATTACCGAAATACCC
58831617 CTGTAGGGAA
Statistics
Matches: 101, Mismatches: 27, Indels: 6
0.75 0.20 0.04
Matches are distributed among these distances:
26 3 0.03
27 97 0.96
28 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.30
Consensus pattern (27 bp):
TTTACAAAATTACCGAAATACCCTCGA
Found at i:58831631 original size:27 final size:27
Alignment explanation
Indices: 58831601--58831823 Score: 239
Period size: 27 Copynumber: 8.3 Consensus size: 27
58831591 CGATTTACAA
*
58831601 AATTACCGAAATACCCCTGTAGGGAAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
58831628 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
58831655 AAATATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** ** *
58831682 AGTTACTAAAATACCCCACTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
58831709 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
58831736 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
58831763 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
58831790 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
58831817 AATTACC
1 AATTACC
58831824 ATTTTACGTG
Statistics
Matches: 160, Mismatches: 36, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 160 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:58832152 original size:2 final size:2
Alignment explanation
Indices: 58832145--58832170 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
58832135 GCTTCGCCAC
58832145 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
58832171 TTGTTCTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58832354 original size:6 final size:6
Alignment explanation
Indices: 58832345--58832543 Score: 142
Period size: 6 Copynumber: 32.3 Consensus size: 6
58832335 TTGCATTCAC
* *
58832345 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * **
58832395 ATTCTG ATTTTG GTTCTG ATTCTG ATTCTG -TTACCTG ACACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
58832444 ATTCTG -TTCCCTA ATTCTG ATTCTG ATT-TCG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCT-G ATTCTG ATTCTG AT--TCTG
* *
58832494 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
58832542 AT
1 AT
58832544 AATGTTTCTT
Statistics
Matches: 153, Mismatches: 21, Indels: 38
0.72 0.10 0.18
Matches are distributed among these distances:
5 11 0.07
6 121 0.79
7 15 0.10
8 6 0.04
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:58832376 original size:25 final size:25
Alignment explanation
Indices: 58832348--58832412 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
58832338 CATTCACATT
*
58832348 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
58832373 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
* *
58832398 CTGATTTTGGTTCTG
1 CTGATTCTGATTCTG
58832413 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:58832439 original size:37 final size:37
Alignment explanation
Indices: 58832367--58832449 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
58832357 ATTCTGTTAC
* **
58832367 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAACACTGATT
* * *
58832404 TTGGTTCTGATTCTGATTCTGTTACCTGACACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAACACTGATT
58832441 CTGATTCTG
1 CTGATTCTG
58832450 TTCCCTAATT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAACACTGATT
Found at i:58832440 original size:25 final size:25
Alignment explanation
Indices: 58832410--58832471 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
58832400 GATTTTGGTT
*
58832410 CTGATTCTGATTCTGTTACCTGACA
1 CTGATTCTGATTCTGTTACCTAACA
* **
58832435 CTGATTCTGATTCTGTTCCCTAATT
1 CTGATTCTGATTCTGTTACCTAACA
58832460 CTGATTCTGATT
1 CTGATTCTGATT
58832472 TCGATTTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAACA
Found at i:58832443 original size:62 final size:62
Alignment explanation
Indices: 58832345--58832511 Score: 255
Period size: 62 Copynumber: 2.7 Consensus size: 62
58832335 TTGCATTCAC
*
58832345 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTTTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* * *
58832407 GTTCTGATTCTGATTCTGTTACCTGACACTGATTCTGATTCTGTTCCCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* * *
58832469 ATT-TCGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTG
1 ATTCT-GATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG
58832512 ATTCTGATTC
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
61 1 0.01
62 94 0.99
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.47
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
Found at i:58832483 original size:37 final size:37
Alignment explanation
Indices: 58832435--58832522 Score: 126
Period size: 37 Copynumber: 2.4 Consensus size: 37
58832425 TTACCTGACA
58832435 CTGATTCTGATTCTGTTC-CCTAATTCTGATTCTGATT
1 CTGATTCTGATTCTG-TCACCTAATTCTGATTCTGATT
* *
58832472 -TCGATTTTGATTCTGTCACCTGATTCTGATTCTGATT
1 CT-GATTCTGATTCTGTCACCTAATTCTGATTCTGATT
58832509 CTGATTCTGATTCT
1 CTGATTCTGATTCT
58832523 CATTTTGATT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
36 3 0.07
37 41 0.91
38 1 0.02
ACGTcount: A:0.16, C:0.20, G:0.15, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATTCTGATT
Found at i:58835182 original size:142 final size:141
Alignment explanation
Indices: 58834976--58835269 Score: 545
Period size: 142 Copynumber: 2.1 Consensus size: 141
58834966 TGAGTGAAAT
*
58834976 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
58835041 -AGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
58835105 GTGTGCATGAGTA
129 GTGTGCATGAGTA
*
58835118 TTCGACCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
58835183 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
58835248 GTGCATGAGTA
131 GTGCATGAGTA
58835259 TTCGGCCATGC
1 TTCGGCCATGC
58835270 TATAGAATTT
Statistics
Matches: 148, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
141 28 0.19
142 63 0.43
143 57 0.39
ACGTcount: A:0.22, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:58835946 original size:29 final size:29
Alignment explanation
Indices: 58835914--58836044 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
58835904 TGACGAGATT
* *
58835914 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
* *
58835943 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
*
58835972 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
* * **
58836001 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
**
58836030 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
58836045 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAC
Found at i:58844651 original size:29 final size:29
Alignment explanation
Indices: 58844589--58844691 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
58844579 GTGACGAGAT
* * *
58844589 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
58844618 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
58844647 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
58844676 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
58844692 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:58854358 original size:113 final size:113
Alignment explanation
Indices: 58854160--58854385 Score: 434
Period size: 113 Copynumber: 2.0 Consensus size: 113
58854150 ATCAAGCCTT
*
58854160 CCTACAATTGCTTATTAGGGAGGCCATGGATACACTCAGCGGGAGCGGTGCCCTCATCGTTGCAC
1 CCTACAATTGCTTATTAGGGAGGCCATGGATACACTCAGCGAGAGCGGTGCCCTCATCGTTGCAC
58854225 CAGAAATTAAAGTTAGTGACGGATGGACGGTTAGTAACCATCAATACG
66 CAGAAATTAAAGTTAGTGACGGATGGACGGTTAGTAACCATCAATACG
*
58854273 CCTACAATTTCTTATTAGGGAGGCCATGGATACACTCAGCGAGAGCGGTGCCCTCATCGTTGCAC
1 CCTACAATTGCTTATTAGGGAGGCCATGGATACACTCAGCGAGAGCGGTGCCCTCATCGTTGCAC
58854338 CAGAAATTAAAGTTAGTGACGGATGGACGGTTAGTAACCATCAATACG
66 CAGAAATTAAAGTTAGTGACGGATGGACGGTTAGTAACCATCAATACG
58854386 GAGAAGGACA
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (113 bp):
CCTACAATTGCTTATTAGGGAGGCCATGGATACACTCAGCGAGAGCGGTGCCCTCATCGTTGCAC
CAGAAATTAAAGTTAGTGACGGATGGACGGTTAGTAACCATCAATACG
Found at i:58856701 original size:27 final size:27
Alignment explanation
Indices: 58856663--58856723 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
58856653 AAACTTGATC
58856663 CTTTGAAGTATATGATGGAGTTAACAG
1 CTTTGAAGTATATGATGGAGTTAACAG
58856690 CTTTGAAGTATATGATGGAGTTAACAG
1 CTTTGAAGTATATGATGGAGTTAACAG
58856717 CTTTGAA
1 CTTTGAA
58856724 TGGGAGAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.34
Consensus pattern (27 bp):
CTTTGAAGTATATGATGGAGTTAACAG
Found at i:58859840 original size:133 final size:131
Alignment explanation
Indices: 58859588--58859851 Score: 313
Period size: 133 Copynumber: 2.0 Consensus size: 131
58859578 CAGGCTAAAG
* * *
58859588 CATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGTAGATCCAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGCA
*
58859653 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAG
58859718 A
131 A
* *
58859719 CATAGCAGATCTAACCTTC-GGATGTTTTTGCATTGAAGCAGATCCAAGATGATTTGGCATC-CT
1 CATAGCAGATCTAACCTTCAGG-TG--TTTACACTGAAGCAGATCCAAGATGATTTGGCATCTC-
* * * * ** *
58859782 TGCGTT-TACA-AGGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATT-GTCAGAGAGCAG
62 TGCATTGT-CAGA-GAACAAATCGAAGA-AACAGATTTGGCATCTCCATATTCGACAGAGAGCAG
58859844 ATCGAAGA
124 ATCGAAGA
58859852 TATTAGATTT
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
130 2 0.02
131 20 0.18
132 3 0.03
133 68 0.60
134 20 0.18
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (131 bp):
CATAGCAGATCTAACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTGGCATCTCTGCA
TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAG
A
Found at i:58859842 original size:44 final size:45
Alignment explanation
Indices: 58859792--58859911 Score: 131
Period size: 44 Copynumber: 2.7 Consensus size: 45
58859782 TGCGTTTACA
58859792 AGGAGCAGATCGAAGATAGCAGATTTGGCATC-TCTGTATT-G-TC
1 AGGAGCAGATCGAAGATAGCAGATTTGGCATCTTC-GTATTCGATC
** * *
58859835 AGAGAGCAGATCGAAGATATTAGATTTGGAATCTTCGTATTCGATG
1 AG-GAGCAGATCGAAGATAGCAGATTTGGCATCTTCGTATTCGATC
* * *
58859881 AGGAGTAAATCCAAGA-AGCAGATTTGGCATC
1 AGGAGCAGATCGAAGATAGCAGATTTGGCATC
58859912 CCCGTATTTG
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
43 2 0.03
44 44 0.70
45 14 0.22
46 3 0.05
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (45 bp):
AGGAGCAGATCGAAGATAGCAGATTTGGCATCTTCGTATTCGATC
Found at i:58859918 original size:44 final size:44
Alignment explanation
Indices: 58859856--58860029 Score: 152
Period size: 44 Copynumber: 3.9 Consensus size: 44
58859846 CGAAGATATT
* * * *
58859856 AGATTTGGAATCTTCGTATTCGATGAGGAGTAAATCCAAGAAGC
1 AGATTTGGCATCTCCGTATTCGACGGGGAGTAAATCCAAGAAGC
* * ** *
58859900 AGATTTGGCATCCCCGTATTTGACGGGGAGTAGGTCCAAGATGAC
1 AGATTTGGCATCTCCGTATTCGACGGGGAGTAAATCCAAGAAG-C
* * *
58859945 AGATTTGGCATCTCCATATTCAACGGGGA-TCAAAACCAAGAAGC
1 AGATTTGGCATCTCCGTATTCGACGGGGAGT-AAATCCAAGAAGC
* ** * * * *
58859989 TGATTTGGCATCTCTATATTTGATGGGGAGCAAATCGAAGA
1 AGATTTGGCATCTCCGTATTCGACGGGGAGTAAATCCAAGA
58860030 CATAGTAGAT
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
44 68 0.67
45 34 0.33
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (44 bp):
AGATTTGGCATCTCCGTATTCGACGGGGAGTAAATCCAAGAAGC
Found at i:58859965 original size:89 final size:89
Alignment explanation
Indices: 58859856--58860018 Score: 202
Period size: 89 Copynumber: 1.8 Consensus size: 89
58859846 CGAAGATATT
* * * * * *
58859856 AGATTTGGAATCTTCGTATTCGATGAGGAGT-AAATCCAAGAAGCAGATTTGGCATCCCCGTATT
1 AGATTTGGAATCTCCATATTCAACGAGGA-TCAAAACCAAGAAGCAGATTTGGCATCCCCATATT
58859920 TGACGGGGAGTAGGTCCAAGATGAC
65 TGACGGGGAGTAGGTCCAAGATGAC
* * * * *
58859945 AGATTTGGCATCTCCATATTCAACGGGGATCAAAACCAAGAAGCTGATTTGGCATCTCTATATTT
1 AGATTTGGAATCTCCATATTCAACGAGGATCAAAACCAAGAAGCAGATTTGGCATCCCCATATTT
*
58860010 GATGGGGAG
66 GACGGGGAG
58860019 CAAATCGAAG
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
88 1 0.02
89 60 0.98
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (89 bp):
AGATTTGGAATCTCCATATTCAACGAGGATCAAAACCAAGAAGCAGATTTGGCATCCCCATATTT
GACGGGGAGTAGGTCCAAGATGAC
Found at i:58860146 original size:80 final size:79
Alignment explanation
Indices: 58859989--58860165 Score: 221
Period size: 80 Copynumber: 2.2 Consensus size: 79
58859979 ACCAAGAAGC
* * * * * **
58859989 TGATTT-GGCATCTCTATATTTGATGGGGAGCAAATCGAAGACATAGTAGATCTGACCTTTGTCA
1 TGATTTGGGCATCTCTGTAATGGACGGAGAGCAAATCGAAGACATAGTAGATCTGACCTTCATCA
58860053 AGGAAAATCCAAGA
66 AGGAAAATCCAAGA
*
58860067 TGATTTGGGTATCTCTGTAATGGACGGAGAGCAAATCGAAGACATTAGTAGATCTGACCTTCATC
1 TGATTTGGGCATCTCTGTAATGGACGGAGAGCAAATCGAAGACA-TAGTAGATCTGACCTTCATC
*** *
58860132 AAGGCTGATTCAAGA
65 AAGGAAAATCCAAGA
*
58860147 TGATTTGGGCGTCTCTGTA
1 TGATTTGGGCATCTCTGTA
58860166 TTCAATAGGG
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 6 0.07
79 31 0.37
80 46 0.55
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (79 bp):
TGATTTGGGCATCTCTGTAATGGACGGAGAGCAAATCGAAGACATAGTAGATCTGACCTTCATCA
AGGAAAATCCAAGA
Found at i:58860179 original size:80 final size:78
Alignment explanation
Indices: 58860014--58860188 Score: 206
Period size: 80 Copynumber: 2.2 Consensus size: 78
58860004 ATATTTGATG
** *
58860014 GGGAGCAAATCGAAGACATAGTAGATCTGACCTTTGTCAAGGAAAATCCAAGATGATTTGGGTAT
1 GGGAGCAAATCGAAGACATAGTAGATCTGACCTTCATCAAGGAAAATCCAAGATGATTTGGGCAT
** *
58860079 CTCTGTAATGGAC
66 CTCTGTAATCAAA
*** *
58860092 GGAGAGCAAATCGAAGACATTAGTAGATCTGACCTTCATCAAGGCTGATTCAAGATGATTTGGGC
1 GG-GAGCAAATCGAAGACA-TAGTAGATCTGACCTTCATCAAGGAAAATCCAAGATGATTTGGGC
* *
58860157 GTCTCTGTATTCAATA
64 ATCTCTGTAATCAA-A
*
58860173 GGGAGCAGATCGAAGA
1 GGGAGCAAATCGAAGA
58860189 ACTCAAGACT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
78 2 0.02
79 16 0.20
80 61 0.75
81 2 0.02
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (78 bp):
GGGAGCAAATCGAAGACATAGTAGATCTGACCTTCATCAAGGAAAATCCAAGATGATTTGGGCAT
CTCTGTAATCAAA
Found at i:58860336 original size:16 final size:16
Alignment explanation
Indices: 58860315--58860347 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
58860305 CAAAAAATTA
*
58860315 AAAAATGAAATTAAAC
1 AAAAATAAAATTAAAC
58860331 AAAAATAAAATTAAAC
1 AAAAATAAAATTAAAC
58860347 A
1 A
58860348 GTCCATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.73, C:0.06, G:0.03, T:0.18
Consensus pattern (16 bp):
AAAAATAAAATTAAAC
Found at i:58863357 original size:28 final size:28
Alignment explanation
Indices: 58863317--58863380 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
58863307 TGTACTAGAG
*
58863317 TACCCCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATAACC-TCTA
58863345 TACCCCTATGTATGCAAAATAACCTCTA
1 TACCCCTATGTATGCAAAATAACCTCTA
58863373 TACCCCTA
1 TACCCCTA
58863381 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.34, C:0.30, G:0.06, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATAACCTCTA
Found at i:58863544 original size:27 final size:28
Alignment explanation
Indices: 58863486--58863575 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
58863476 AGGAAGCGTC
*
58863486 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
58863514 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
58863541 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
58863570 CTGGTG
1 CTGGTG
58863576 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:58863586 original size:29 final size:28
Alignment explanation
Indices: 58863496--58863586 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
58863486 CTGGTGGCTA
* * *
58863496 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
58863524 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
58863551 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
58863580 TGTCACA
1 TGCCACA
58863587 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:58863594 original size:55 final size:56
Alignment explanation
Indices: 58863486--58863600 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
58863476 AGGAAGCGTC
* * *
58863486 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
58863541 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
58863597 CTGG
1 CTGG
58863601 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:58864588 original size:22 final size:22
Alignment explanation
Indices: 58864539--58864592 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
58864529 TAATCCTTTT
*
58864539 TTATATATTTCTAAATTTTTTAC
1 TTAT-TATTTCTAAATATTTTAC
58864562 TTATTTATTT-TAAATATTTTA-
1 TTA-TTATTTCTAAATATTTTAC
58864583 TATATTATTT
1 T-TATTATTT
58864593 ATTTTACTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 7 0.25
22 12 0.43
23 8 0.29
24 1 0.04
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (22 bp):
TTATTATTTCTAAATATTTTAC
Found at i:58864724 original size:32 final size:32
Alignment explanation
Indices: 58864641--58864741 Score: 96
Period size: 32 Copynumber: 3.0 Consensus size: 32
58864631 TATCGTATAT
* *
58864641 TATTTTATTATATATTTATATGATTATGTTATGTTG
1 TATTTTA-TATATA-TTATCT-ATTATGTTAT-TTA
* *
58864677 TCTATTATATATATTATCTATTAT-TTATTTA
1 TATTTTATATATATTATCTATTATGTTATTTA
* *
58864708 TATTTTATCATATATTATTTATTATGTTGTTTA
1 TATTTTAT-ATATATTATCTATTATGTTATTTA
58864741 T
1 T
58864742 CTTTATCTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
31 8 0.15
32 19 0.35
33 12 0.22
34 5 0.09
35 6 0.11
36 5 0.09
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (32 bp):
TATTTTATATATATTATCTATTATGTTATTTA
Found at i:58870469 original size:54 final size:54
Alignment explanation
Indices: 58870402--58870541 Score: 181
Period size: 54 Copynumber: 2.6 Consensus size: 54
58870392 TTATTTCAAT
* * * **
58870402 TCAGTGAGTTACATGGCCTAGCACATGGCTTGCGACACGGTCGTGTGTTGCAAG
1 TCAGAGAGTTACATAGCCTAGCACATGGCCTGCGACACGACCGTGTGTTGCAAG
* * *
58870456 TCAGAGAGTTACATAGCTTAGTACATGGCCTGCGACATGACCGTGTGTTGCAAG
1 TCAGAGAGTTACATAGCCTAGCACATGGCCTGCGACACGACCGTGTGTTGCAAG
* * *
58870510 TCAAAGAGTTACACAGCCTAGCACACGGCCTG
1 TCAGAGAGTTACATAGCCTAGCACATGGCCTG
58870542 TGAGACAGTC
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (54 bp):
TCAGAGAGTTACATAGCCTAGCACATGGCCTGCGACACGACCGTGTGTTGCAAG
Found at i:58871027 original size:22 final size:22
Alignment explanation
Indices: 58871002--58871044 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
58870992 TAGTGTGATA
58871002 TCTCCTAACCTAAATTGAACTT
1 TCTCCTAACCTAAATTGAACTT
*
58871024 TCTCTTAACCTAAATTGAACT
1 TCTCCTAACCTAAATTGAACT
58871045 ATGTTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.37
Consensus pattern (22 bp):
TCTCCTAACCTAAATTGAACTT
Found at i:58871246 original size:23 final size:22
Alignment explanation
Indices: 58871220--58871269 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
58871210 ACATTTTATT
58871220 ATCATAAACAA-ATCACATCATAA
1 ATCATAAACAACATCA-ATCA-AA
58871243 ATCAT-AACAACATCAATCAAA
1 ATCATAAACAACATCAATCAAA
58871264 ATCATA
1 ATCATA
58871270 CATACGGTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 7 0.28
22 9 0.36
23 9 0.36
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (22 bp):
ATCATAAACAACATCAATCAAA
Found at i:58876788 original size:40 final size:40
Alignment explanation
Indices: 58876739--58876959 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
58876729 CTACTGCTCG
* *
58876739 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
58876779 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
58876819 AATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
58876859 AATGCCTTCGGGACTTA-CCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
58876898 AATGCCTTCGGGACTTAGCCC-GA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
58876937 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
58876960 TTATCATCCG
Statistics
Matches: 172, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
38 1 0.01
39 73 0.42
40 98 0.57
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:58884801 original size:40 final size:40
Alignment explanation
Indices: 58884708--58884963 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
58884698 AAGCCAAGTA
* * *
58884708 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
58884746 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58884786 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58884826 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58884866 CCTTCGGGACTTA-CCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
58884905 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
58884945 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
58884964 TTATCATCCG
Statistics
Matches: 203, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
38 12 0.06
39 57 0.28
40 134 0.66
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:58884916 original size:79 final size:80
Alignment explanation
Indices: 58884708--58884963 Score: 378
Period size: 79 Copynumber: 3.2 Consensus size: 80
58884698 AAGCCAAGTA
* * * *
58884708 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
58884770 GTAACTCGCACCAATG
65 GTAACTCGCACAAATG
*
58884786 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
58884851 TAACTCGCACAAATG
66 TAACTCGCACAAATG
58884866 CCTTCGGGACTTA-CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
* * *
58884929 GTCACTAGCGCAAATG
65 GTAACTCGCACAAATG
58884945 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
58884964 TTATCATCCG
Statistics
Matches: 163, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
78 14 0.09
79 90 0.55
80 59 0.36
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:58884943 original size:119 final size:119
Alignment explanation
Indices: 58884708--58884963 Score: 385
Period size: 119 Copynumber: 2.2 Consensus size: 119
58884698 AAGCCAAGTA
* *
58884708 CCTTCGGGATTTAA-CCGGATATAGCTACTCGCTCAATGCCTTCGGGACATAGCCCGGATATAGT
1 CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAATGCCTTCGGGACATAGCCCGGATATAGT
* *
58884772 AACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
58884826 CCTTCGGGACTTAACCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTA-CCCGGATATA
1 CCTTCGGGACTTAACCCGGATATAGCT-ACTCGCAC-AATGCCTTCGGGACATAGCCCGGATATA
* *
58884889 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
64 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
*
58884945 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAACCCGG
58884964 TTATCATCCG
Statistics
Matches: 126, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
118 15 0.12
119 95 0.75
120 16 0.13
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAATGCCTTCGGGACATAGCCCGGATATAGT
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:58887711 original size:40 final size:40
Alignment explanation
Indices: 58887667--58887893 Score: 194
Period size: 40 Copynumber: 5.7 Consensus size: 40
58887657 GGCTTACTAG
* * * *
58887667 AGTATAAACAAGGGCACGTAAGTGCATTCAAGGCTATCGA
1 AGTACAAACAAGGGCACGTAAGTGCAATCAAGGGTACCGA
* * *
58887707 AGTATAAACAAAGGCACGTAATTGCAATC-AGGTGTACCGA
1 AGTACAAACAAGGGCACGTAAGTGCAATCAAGG-GTACCGA
* * * * *
58887747 AGTTCAAGCAAGGGAACG-AATGTGTAATC-AGGGTACTGA
1 AGTACAAACAAGGGCACGTAA-GTGCAATCAAGGGTACCGA
* * *
58887786 AGTACAAAC-AGGGACATGTATGTGCAATCAGGGGTACCGA
1 AGTACAAACAAGGG-CACGTAAGTGCAATCAAGGGTACCGA
* * * *
58887826 AGTACAAACAGGGGCACGTATGTGCAAT-TAGGGTTATCGA
1 AGTACAAACAAGGGCACGTAAGTGCAATCAAGGG-TACCGA
* *
58887866 AGTACAAACAAGGGCACGCATGTGCAAT
1 AGTACAAACAAGGGCACGTAAGTGCAAT
58887894 AATCAATAAT
Statistics
Matches: 152, Mismatches: 28, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
38 4 0.03
39 30 0.20
40 115 0.76
41 3 0.02
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.19
Consensus pattern (40 bp):
AGTACAAACAAGGGCACGTAAGTGCAATCAAGGGTACCGA
Found at i:58887797 original size:19 final size:19
Alignment explanation
Indices: 58887775--58887838 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
58887765 AATGTGTAAT
58887775 CAGGGTACTGAAGTACAAA
1 CAGGGTACTGAAGTACAAA
* * *
58887794 CAGGG-ACATGTATGTGCAAT
1 CAGGGTAC-TG-AAGTACAAA
*
58887814 CAGGGGTACCGAAGTACAAA
1 CA-GGGTACTGAAGTACAAA
58887834 CAGGG
1 CAGGG
58887839 GCACGTATGT
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
18 2 0.06
19 10 0.29
20 16 0.47
21 4 0.12
22 2 0.06
ACGTcount: A:0.36, C:0.17, G:0.31, T:0.16
Consensus pattern (19 bp):
CAGGGTACTGAAGTACAAA
Found at i:58887812 original size:79 final size:80
Alignment explanation
Indices: 58887667--58887893 Score: 221
Period size: 79 Copynumber: 2.9 Consensus size: 80
58887657 GGCTTACTAG
* * * * * * * *
58887667 AGTATAAACAAGGGCACGTAA-GTGCATTCAAGGCTATCGAAGTATAAACAAAGGCACGTAAT-T
1 AGTACAAACAAGGGAACG-AATGTGCAATCAGGGTTATCGAAGTACAAACAAGGGCACG-CATGT
*
58887730 GCAATCAGGTGTACCGA
64 GCAATCAGGGGTACCGA
* * * * *
58887747 AGTTCAAGCAAGGGAACGAATGTGTAATCAGGG-TA-CTGAAGTACAAAC-AGGGACATGTATGT
1 AGTACAAACAAGGGAACGAATGTGCAATCAGGGTTATC-GAAGTACAAACAAGGG-CACGCATGT
58887809 GCAATCAGGGGTACCGA
64 GCAATCAGGGGTACCGA
* * * *
58887826 AGTACAAACAGGGGCACGTATGTGCAATTAGGGTTATCGAAGTACAAACAAGGGCACGCATGTGC
1 AGTACAAACAAGGGAACGAATGTGCAATCAGGGTTATCGAAGTACAAACAAGGGCACGCATGTGC
58887891 AAT
66 AAT
58887894 AATCAATAAT
Statistics
Matches: 119, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
78 6 0.05
79 60 0.50
80 48 0.40
81 5 0.04
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.19
Consensus pattern (80 bp):
AGTACAAACAAGGGAACGAATGTGCAATCAGGGTTATCGAAGTACAAACAAGGGCACGCATGTGC
AATCAGGGGTACCGA
Found at i:58892217 original size:46 final size:46
Alignment explanation
Indices: 58892167--58892342 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
58892157 TGGTTGAGCA
*
58892167 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
58892213 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAGTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
58892260 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
58892306 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58892343 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:58892323 original size:93 final size:93
Alignment explanation
Indices: 58892164--58892335 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
58892154 GGATGGTTGA
* * *
58892164 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
58892229 TGAGTCCGAGTTCGTGAGATGTAAGTAG
66 TGAGTCCGAGTTCGTGAGATGTAAGTAG
* *
58892257 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
58892322 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
58892336 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAAGTAG
Found at i:58897324 original size:17 final size:17
Alignment explanation
Indices: 58897302--58897335 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
58897292 CACTAACATG
*
58897302 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
58897319 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
58897336 TATACATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:58899987 original size:45 final size:45
Alignment explanation
Indices: 58899936--58900026 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
58899926 TTTAAAAAGG
58899936 TAAGTTTGAATACAAGTAATGATATATCAAGTATAATGTTAATGT
1 TAAGTTTGAATACAAGTAATGATATATCAAGTATAATGTTAATGT
* *
58899981 TAAGTTTGAATACAAGTGATGATATATCAAGTCTAATGTTAATGT
1 TAAGTTTGAATACAAGTAATGATATATCAAGTATAATGTTAATGT
58900026 T
1 T
58900027 GGCTTGGTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.38
Consensus pattern (45 bp):
TAAGTTTGAATACAAGTAATGATATATCAAGTATAATGTTAATGT
Found at i:58907551 original size:40 final size:40
Alignment explanation
Indices: 58907443--58907652 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
58907433 CGGGATTTAA
* * * * *
58907443 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
58907483 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
58907523 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
58907563 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
58907603 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
58907643 CCGGATATAT
1 CCGGATATAT
58907653 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:58915684 original size:40 final size:40
Alignment explanation
Indices: 58915576--58915785 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
58915566 CGGGATTTAA
* * * * *
58915576 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
58915616 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
58915656 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
58915696 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
58915736 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
58915776 CCGGATATAT
1 CCGGATATAT
58915786 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:58921024 original size:47 final size:47
Alignment explanation
Indices: 58920914--58921079 Score: 148
Period size: 47 Copynumber: 3.6 Consensus size: 47
58920904 TCATTCATGC
* * * * *
58920914 ACCAGTGTAAGA-CATGTCTGGGACATGCTTCGGCCAC-A-TTATAA
1 ACCAGTGTAAGACCATGTCTGGGACATGCATCGACCTCGAGATGTAA
*
58920958 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATGTAA
1 -A-CCAGTGTAAGACCATGTCTGGGACAT-GCATCGACCTCGAGATGTAA
*
58921008 ACCAGTGTAAGA-CATGTCTGGGACATGCATC-AGCTACGAGATGT--
1 ACCAGTGTAAGACCATGTCTGGGACATGCATCGACCT-CGAGATGTAA
** **
58921052 GTCAGTGTAAGACCATCCCTGGGACATG
1 ACCAGTGTAAGACCATGTCTGGGACATG
58921080 GCATAAGACC
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
44 10 0.10
45 17 0.17
46 23 0.23
47 28 0.27
48 18 0.18
49 2 0.02
50 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (47 bp):
ACCAGTGTAAGACCATGTCTGGGACATGCATCGACCTCGAGATGTAA
Found at i:58921091 original size:24 final size:24
Alignment explanation
Indices: 58921059--58921104 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
58921049 TGTGTCAGTG
58921059 TAAGACCATCCCTGGGACATGGCA
1 TAAGACCATCCCTGGGACATGGCA
*
58921083 TAAGACCATCTCTGGGACATGG
1 TAAGACCATCCCTGGGACATGG
58921105 AATCGGCACG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (24 bp):
TAAGACCATCCCTGGGACATGGCA
Found at i:58921157 original size:47 final size:46
Alignment explanation
Indices: 58921083--58921261 Score: 175
Period size: 47 Copynumber: 3.8 Consensus size: 46
58921073 GGACATGGCA
* * *
58921083 TAAGACCATCTCTGGGACATGGAATCGGCACGTATAGAGTGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGAG-CAGTG
* *
58921130 TAAGACCATGTCTAGGACATGGCATCGGCACAGATATATGAGAGCTAGTC
1 TAAGACCATGTCTGGGACATGGCATCGGCAC-G-TATA-GAGAGC-AGTG
* * * **
58921180 TAAGACCATGTCTGGAACATGGCAT--GAACTTGACGGATGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCACGT-ATAGA-GAG-CAGTG
58921227 TAAGACCATGTCTGGGACATGGCATCGGCAC-TATA
1 TAAGACCATGTCTGGGACATGGCATCGGCACGTATA
58921262 CCCAATGTTC
Statistics
Matches: 107, Mismatches: 16, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
46 3 0.03
47 60 0.56
48 6 0.06
49 8 0.07
50 30 0.28
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
TAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAGAGCAGTG
Found at i:58925361 original size:24 final size:24
Alignment explanation
Indices: 58925321--58925382 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
58925311 GATTATGTAG
58925321 AAAGAATAAAGAAATGAA-AAAAAA
1 AAAGAA-AAAGAAATGAAGAAAAAA
* *
58925345 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAGAAAAAA
*
58925370 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
58925383 AAAAAAGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.16
24 12 0.38
25 15 0.47
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAGAAAAAA
Found at i:58926578 original size:29 final size:29
Alignment explanation
Indices: 58926545--58926609 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
58926535 GTGACGAGAT
*
58926545 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
58926574 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
58926603 CGGCACT
1 TGGCACT
58926610 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:58933255 original size:21 final size:20
Alignment explanation
Indices: 58933226--58933281 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
58933216 GAAAGAATAA
58933226 AGAAATGAAAAAAAAAAAAG
1 AGAAATGAAAAAAAAAAAAG
* *
58933246 AGAATATGAAGAAAAACAAAG
1 AGAA-ATGAAAAAAAAAAAAG
*
58933267 A-AAAGGAAAAAAAAA
1 AGAAATGAAAAAAAAA
58933282 GTGTTCATTC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 9 0.30
20 6 0.20
21 15 0.50
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (20 bp):
AGAAATGAAAAAAAAAAAAG
Found at i:58934466 original size:29 final size:29
Alignment explanation
Indices: 58934433--58934497 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
58934423 GTGACGAGAT
*
58934433 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
58934462 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
58934491 CGGCACT
1 TGGCACT
58934498 TGTGCGAGCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:58938300 original size:53 final size:54
Alignment explanation
Indices: 58938237--58938440 Score: 203
Period size: 53 Copynumber: 3.8 Consensus size: 54
58938227 TTCCTTTTTA
* * *
58938237 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
58938290 AACTCACCATTGCCATGCCATGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
58938344 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCATTTTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
58938399 AACTTACCAATGTCATGCCTTGGCATGGTCTTACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
58938441 TTTAAACCCT
Statistics
Matches: 118, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 45 0.38
54 34 0.29
55 39 0.33
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:58945639 original size:53 final size:52
Alignment explanation
Indices: 58945571--58945776 Score: 187
Period size: 53 Copynumber: 3.8 Consensus size: 52
58945561 TTCCTTTTTA
*
58945571 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT
* * * *
58945623 GAACTCACCATTGCCATGTCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 -AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT
* * * * * * *
58945676 ATTAGTTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 A--A-CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCC-T-TAT
* * * * * * *
58945733 AACTTATCAATGTCATGCCTTGGCATGATCTTACTTGGTATCCT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCT
58945777 AAATCCTAAT
Statistics
Matches: 125, Mismatches: 23, Indels: 9
0.80 0.15 0.06
Matches are distributed among these distances:
52 1 0.01
53 47 0.38
54 36 0.29
55 37 0.30
56 1 0.01
57 3 0.02
ACGTcount: A:0.21, C:0.22, G:0.17, T:0.39
Consensus pattern (52 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT
Found at i:58945726 original size:55 final size:52
Alignment explanation
Indices: 58945584--58945776 Score: 188
Period size: 55 Copynumber: 3.6 Consensus size: 52
58945574 TTACCATTGC
* * * * *
58945584 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-AACTTATCAATGT
* * * *
58945637 CATGTCTTGGCATGGTCTTACATGGGATCTTTGCCTTATATTAGTTTATCAATGT
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA--A-CTTATCAATGT
* * *
58945692 CATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTATCAATGT
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCC-T-TATAACTTATCAATGT
* * * *
58945746 CATGCCTTGGCATGATCTTACTTGGTATCCT
1 CATGTCTTGACATGGTCTTACATGGTATCCT
58945777 AAATCCTAAT
Statistics
Matches: 113, Mismatches: 22, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
52 1 0.01
53 35 0.31
54 36 0.32
55 37 0.33
56 1 0.01
57 3 0.03
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (52 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAACTTATCAATGT
Found at i:58947953 original size:19 final size:19
Alignment explanation
Indices: 58947929--58947973 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
58947919 GAGGCCATGT
*
58947929 TGGGCCTAAATAAGCCGTG
1 TGGGCCCAAATAAGCCGTG
*
58947948 TGGGCCCAAATAAGCTGTG
1 TGGGCCCAAATAAGCCGTG
58947967 TGGGCCC
1 TGGGCCC
58947974 CACGATCTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.20
Consensus pattern (19 bp):
TGGGCCCAAATAAGCCGTG
Found at i:58948378 original size:21 final size:21
Alignment explanation
Indices: 58948352--58948398 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
58948342 AAGTGTACTA
*
58948352 TACTGGCAGCTGTGCTGCAAT
1 TACTGGCAGCTCTGCTGCAAT
58948373 TACTGGCAGCTCTGCTGCAAT
1 TACTGGCAGCTCTGCTGCAAT
*
58948394 CACTG
1 TACTG
58948399 ATTAGTGTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.19, C:0.28, G:0.26, T:0.28
Consensus pattern (21 bp):
TACTGGCAGCTCTGCTGCAAT
Found at i:58948891 original size:18 final size:18
Alignment explanation
Indices: 58948868--58948904 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
58948858 TGCTAGCTTT
*
58948868 AGGATACATTTTTTCAAA
1 AGGATACATGTTTTCAAA
*
58948886 AGGATATATGTTTTCAAA
1 AGGATACATGTTTTCAAA
58948904 A
1 A
58948905 CACCACGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.38
Consensus pattern (18 bp):
AGGATACATGTTTTCAAA
Found at i:58949283 original size:17 final size:17
Alignment explanation
Indices: 58949261--58949294 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
58949251 TGAGTTCTAG
58949261 TAGCTATAAGAA-TCAAA
1 TAGCTAT-AGAATTCAAA
58949278 TAGCTATAGAATTCAAA
1 TAGCTATAGAATTCAAA
58949295 ACTTGAGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (17 bp):
TAGCTATAGAATTCAAA
Found at i:58953941 original size:28 final size:28
Alignment explanation
Indices: 58953878--58953998 Score: 113
Period size: 28 Copynumber: 4.3 Consensus size: 28
58953868 GATCCATACT
* * *
58953878 TATTCATTTGGCCCCTTTAGGCCCAATC-
1 TATTCATATGG-CCCATCAGGCCCAATCA
* *
58953906 TCATTCATATGGCCTATCGGGCCCAATCA
1 T-ATTCATATGGCCCATCAGGCCCAATCA
* *
58953935 TAGTCATATGGCCGATCAGGCCCAATCA
1 TATTCATATGGCCCATCAGGCCCAATCA
*
58953963 CT-TTCATATGGCCCGTCAGGCCCAATCA
1 -TATTCATATGGCCCATCAGGCCCAATCA
58953991 CT-TTCATA
1 -TATTCATA
58953999 GTTATGCAAT
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
28 68 0.86
29 11 0.14
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (28 bp):
TATTCATATGGCCCATCAGGCCCAATCA
Found at i:58956822 original size:43 final size:43
Alignment explanation
Indices: 58956675--58956831 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
58956665 TGTGTTATTG
* * *
58956675 TGTAAGACCACATCTGGGA-TGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACATCTGGGACAG-TGGCATCGA-TATTTGA-TTACA
** * * *
58956719 TGTAAGACCATGTCTGGGGCATTGGCATCG-TATTTGATTTCA
1 TGTAAGACCACATCTGGGACAGTGGCATCGATATTTGATTACA
* *
58956761 TGTCAGACC-CTATTTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGACAGTGGCATCGATATTTGATTACA
* *
58956804 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACATCTGGGACAGTGGCAT
58956832 TGTATGAGCT
Statistics
Matches: 89, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
42 27 0.30
43 37 0.42
44 25 0.28
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACAGTGGCATCGATATTTGATTACA
Found at i:58959093 original size:20 final size:20
Alignment explanation
Indices: 58959068--58959105 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
58959058 GTTTATTCGC
*
58959068 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
58959088 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
58959106 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:58960724 original size:28 final size:28
Alignment explanation
Indices: 58960692--58960760 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
58960682 GCGTAGATCA
58960692 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
58960720 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58960748 CGATA-TACCCCTA
1 CGAAATTACCCCTA
58960761 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:58967048 original size:20 final size:20
Alignment explanation
Indices: 58967023--58967060 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
58967013 GTTTATTCGC
*
58967023 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
58967043 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
58967061 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:58968704 original size:28 final size:28
Alignment explanation
Indices: 58968672--58968740 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
58968662 GCGTAGATCA
58968672 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
58968700 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
58968728 CGATA-TACCCCTA
1 CGAAATTACCCCTA
58968741 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:58978477 original size:28 final size:28
Alignment explanation
Indices: 58978418--58978481 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
58978408 TGGGAAGTAG
* *
58978418 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
* *
58978446 TTGGGCCTGATGGGCCATGTGAACGAGC
1 TTGGGCCTGATGGGCCATATGAACGAGA
58978474 TTGGGCCT
1 TTGGGCCT
58978482 AAAGTAGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.17, C:0.19, G:0.38, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACGAGA
Found at i:58978828 original size:27 final size:27
Alignment explanation
Indices: 58978798--58979216 Score: 390
Period size: 27 Copynumber: 15.7 Consensus size: 27
58978788 TAATAAAGAG
* *
58978798 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
58978825 AAATTACCGAAATACCC-CGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
58978851 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
58978877 AAATTATTGAAATATCCC-CAATTTGTA
1 AAATTACTGAAATA-CCCTCGATTTGTA
* * *
58978904 AAA-TAATCGAAATACCTTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
58978930 AAATTACCGAAATACCC-CTGATTTATA
1 AAATTACTGAAATACCCTC-GATTTGTA
** *
58978957 AAATTACCAAAATACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
58978983 AAATTACTAAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
58979010 AAATTACTGAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
* * *
58979037 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
58979064 AAATTACTTAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
58979091 AAATTACTAAAATACCTTTGATTTTTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
58979118 AAATTACTAAAATACCCTCGGTTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
58979145 AAATTACCGAAACACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
58979172 AAATTA-TCGAAGTACCATTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
*
58979199 AAATTACCGAAATACCCT
1 AAATTACTGAAATACCCT
58979217 TGTAATGTAA
Statistics
Matches: 318, Mismatches: 59, Indels: 30
0.78 0.14 0.07
Matches are distributed among these distances:
25 1 0.00
26 88 0.28
27 227 0.71
28 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:58979061 original size:54 final size:53
Alignment explanation
Indices: 58978798--58979177 Score: 401
Period size: 53 Copynumber: 7.1 Consensus size: 53
58978788 TAATAAAGAG
* *
58978798 AAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAATACCCCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTGAAATTACCGAAATACCCCGATTTGTA
* ** *
58978851 AAATTACTGAAATACCCTCGA-TTGTGAAATTATTGAAATATCCCCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTGAAATTACCGAAATA-CCCCGATTTGTA
* * * *
58978904 AAA-TAATCGAAATACCTTCGA-TTGTGAAATTACCGAAATACCCCTGATTTATA
1 AAATTACT-AAAATACCCTCGATTTGTGAAATTACCGAAATACCCC-GATTTGTA
* ** *
58978957 AAATTACCAAAATACCCTCGA-TTGTGAAATTACTAAAATACCCTTGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTGAAATTACCGAAATACCC-CGATTTGTA
* * *
58979010 AAATTACTGAAATACCC-CTGATTTGTGAAATTACCGAAACACCCTCAATTTGTA
1 AAATTACTAAAATACCCTC-GATTTGTGAAATTACCGAAATACCC-CGATTTGTA
* * ** ** *
58979064 AAATTACTTAAATACCCTCGATTTGTAAAATTACTAAAATACCTTTGATTTTTA
1 AAATTACTAAAATACCCTCGATTTGTGAAATTACCGAAATACC-CCGATTTGTA
* * * *
58979118 AAATTACTAAAATACCCTCGGTTTGTAAAATTACCGAAACACCCCCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTGAAATTACCGAAATA-CCCCGATTTGTA
58979172 AAATTA
1 AAATTA
58979178 TCGAAGTACC
Statistics
Matches: 272, Mismatches: 45, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
52 24 0.09
53 126 0.46
54 119 0.44
55 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (53 bp):
AAATTACTAAAATACCCTCGATTTGTGAAATTACCGAAATACCCCGATTTGTA
Found at i:58979247 original size:27 final size:27
Alignment explanation
Indices: 58979190--58979259 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
58979180 GAAGTACCAT
* *
58979190 TGTAGTGTAAAATTACCGAAATACCCT
1 TGTAGTGTAAAATGACCGAAATACCCC
* *
58979217 TGTAATGTAAAATGACCGACATACCCC
1 TGTAGTGTAAAATGACCGAAATACCCC
*
58979244 TGTAGGGTAAAATGAC
1 TGTAGTGTAAAATGAC
58979260 TGTTTTGCCC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
TGTAGTGTAAAATGACCGAAATACCCC
Found at i:58998533 original size:27 final size:28
Alignment explanation
Indices: 58998503--58998572 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
58998493 ATAGTGAATC
*
58998503 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
58998530 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
58998558 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
58998573 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:58998644 original size:42 final size:42
Alignment explanation
Indices: 58998580--58998686 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
58998570 GCTGTACAAT
* * *
58998580 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTATCACCGTGTCCA
58998622 TTTATACCCGCACACTTAGTGCCAATCTTATCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTATCACCGTGTCCA
58998664 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
58998687 GAGACCAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTATCACCGTGTCCA
Found at i:59001374 original size:25 final size:25
Alignment explanation
Indices: 59001346--59001395 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
59001336 TTATGCAGAG
*
59001346 ATAGTATTTTAGAGTTTTTTTTCTT
1 ATAGTATTTTAGAGTTTTTATTCTT
59001371 ATAGTATTTTAGAGTTTTTATTCTT
1 ATAGTATTTTAGAGTTTTTATTCTT
59001396 TACAGAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.04, G:0.12, T:0.62
Consensus pattern (25 bp):
ATAGTATTTTAGAGTTTTTATTCTT
Found at i:59007145 original size:40 final size:40
Alignment explanation
Indices: 59007089--59007217 Score: 222
Period size: 40 Copynumber: 3.2 Consensus size: 40
59007079 GTGTTACAAT
*
59007089 GTATGTGCAATCAGGGGTACCGAAGTACAAAAAGAGGCAC
1 GTATGTGCAATTAGGGGTACCGAAGTACAAAAAGAGGCAC
59007129 GTATGTGCAATTAGGGGTACCGAAGTACAAAAAGAGGCAC
1 GTATGTGCAATTAGGGGTACCGAAGTACAAAAAGAGGCAC
* * *
59007169 GTATGTGCAATTAGGGGTACCAAAGTACAAATAGGGGCAC
1 GTATGTGCAATTAGGGGTACCGAAGTACAAAAAGAGGCAC
59007209 GTATGTGCA
1 GTATGTGCA
59007218 GTCATCAATA
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.19
Consensus pattern (40 bp):
GTATGTGCAATTAGGGGTACCGAAGTACAAAAAGAGGCAC
Found at i:59008914 original size:42 final size:46
Alignment explanation
Indices: 59008865--59008980 Score: 132
Period size: 49 Copynumber: 2.5 Consensus size: 46
59008855 CATAGTTCAA
*
59008865 CTATGGTCTTACAC-AT-C-T-TCACATAATGATGCCATAGCCCAG
1 CTATGGTCTTACACAATACATATAACATAATGATGCCATAGCCCAG
* *
59008907 CTATGGTCTTACACGTAATCACATATAACATATTGATGCCATAGCCTAG
1 CTATGGTCTTACAC--AAT-ACATATAACATAATGATGCCATAGCCCAG
59008956 CTATGGTCTTACACGAATCACATAT
1 CTATGGTCTTACAC-AAT-ACATAT
59008981 CTCACTGATG
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
42 14 0.22
45 2 0.03
47 1 0.02
48 11 0.17
49 35 0.56
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (46 bp):
CTATGGTCTTACACAATACATATAACATAATGATGCCATAGCCCAG
Found at i:59008949 original size:49 final size:48
Alignment explanation
Indices: 59008885--59008980 Score: 165
Period size: 49 Copynumber: 2.0 Consensus size: 48
59008875 ACACATCTTC
59008885 ACATAATGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATA
1 ACATAATGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATATA
* *
59008934 ACATATTGATGCCATAGCCTAGCTATGGTCTTACACGAATCACATAT
1 ACATAATGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATAT
59008981 CTCACTGATG
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 10 0.22
49 35 0.78
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (48 bp):
ACATAATGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATA
Found at i:59010448 original size:50 final size:46
Alignment explanation
Indices: 59010372--59010493 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 46
59010362 TGTCTTCGAC
** * *
59010372 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC----ATATATCTAAT
* * *
59010422 ATGGGCTTACATGGCTCATTCTTGTCTCCAAAGCCATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
*
59010468 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
59010494 CTCTCCTGTC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 33 0.53
50 29 0.47
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
Found at i:59010508 original size:26 final size:26
Alignment explanation
Indices: 59010479--59010532 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
59010469 TGGACTTACA
59010479 TGGCTCATTTCTGTCCTCTCCTGTCC
1 TGGCTCATTTCTGTCCTCTCCTGTCC
*
59010505 TGGCTCATTTCTGTCCTGTCCTGTCC
1 TGGCTCATTTCTGTCCTCTCCTGTCC
59010531 TG
1 TG
59010533 TCAACCCCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.04, C:0.35, G:0.19, T:0.43
Consensus pattern (26 bp):
TGGCTCATTTCTGTCCTCTCCTGTCC
Found at i:59011763 original size:31 final size:31
Alignment explanation
Indices: 59011729--59011844 Score: 189
Period size: 31 Copynumber: 3.7 Consensus size: 31
59011719 TATTACACAG
* * *
59011729 AGCTACCATTTTTCACTGATCAGGTAGCTGG
1 AGCTACCACTTTTCACTGATCAGGTAGCAGA
59011760 AGCTACCACTTTTCACTGATCAGGTAGCAGA
1 AGCTACCACTTTTCACTGATCAGGTAGCAGA
59011791 AGCTACCACTTTTCACTGATCAGGTAGCCA-A
1 AGCTACCACTTTTCACTGATCAGGTAG-CAGA
59011822 AGCTACCACTTTTCACTGATCAG
1 AGCTACCACTTTTCACTGATCAG
59011845 ATAAGTGTAG
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
31 79 0.98
32 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
AGCTACCACTTTTCACTGATCAGGTAGCAGA
Found at i:59015898 original size:23 final size:23
Alignment explanation
Indices: 59015868--59015918 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
59015858 TACTATTTCA
59015868 TATTTAAGCTTTATTCACCAAAG
1 TATTTAAGCTTTATTCACCAAAG
59015891 TATTTAAGCTTTATTCACCAAAG
1 TATTTAAGCTTTATTCACCAAAG
59015914 TATTT
1 TATTT
59015919 GGAATATCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.08, T:0.43
Consensus pattern (23 bp):
TATTTAAGCTTTATTCACCAAAG
Found at i:59016638 original size:42 final size:42
Alignment explanation
Indices: 59016592--59016701 Score: 152
Period size: 42 Copynumber: 2.6 Consensus size: 42
59016582 CATAGTTCAA
* *
59016592 CTATGGTCTTACACATCTTCACATAAT-TATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACAT-ATCGATGCCATAGCCCAG
* *
59016634 CTATGGTTTTACACATATTCATATATCGATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
*
59016676 CTATGGTCTTACACA-AATCACATATC
1 CTATGGTCTTACACATATTCACATATC
59016702 TCACTGATGC
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
41 11 0.18
42 49 0.82
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (42 bp):
CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
Found at i:59016727 original size:46 final size:46
Alignment explanation
Indices: 59016661--59016779 Score: 150
Period size: 47 Copynumber: 2.6 Consensus size: 46
59016651 TTCATATATC
* * *
59016661 GATGCCATAGCCCAGCTATGGTCTTA-CACAAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTAGCACAAAT-ACATATCACACT
** * *
59016707 GATGCCATATCCCAGATATGGTCTTATGCAGTAGTATATATCACACT
1 GATGCCATATCCCAGATATGGTCTTA-GCACAAATACATATCACACT
59016754 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATATCCCAGATATGGTCTTA
59016780 TACGGAAATC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
46 24 0.38
47 36 0.56
48 4 0.06
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTAGCACAAATACATATCACACT
Found at i:59016851 original size:31 final size:32
Alignment explanation
Indices: 59016814--59016962 Score: 225
Period size: 31 Copynumber: 4.8 Consensus size: 32
59016804 ACTTGTAGTT
*
59016814 GAAGCTACCACTATTCACTGATCAGGTAGCCA
1 GAAGCTACCACTTTTCACTGATCAGGTAGCCA
* *
59016846 G-AGCTACCATTTTTCACTGATCAGGTAG-CT
1 GAAGCTACCACTTTTCACTGATCAGGTAGCCA
* *
59016876 GGAGCTACCCCTTTTCACTGATCAGGTAG-CA
1 GAAGCTACCACTTTTCACTGATCAGGTAGCCA
59016907 GAAGCTACCACTTTTCACTGATCAGGTAGCC-
1 GAAGCTACCACTTTTCACTGATCAGGTAGCCA
59016938 GAAGCTACCACTTTTCACTGATCAG
1 GAAGCTACCACTTTTCACTGATCAG
59016963 ATAAGTGTAA
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
30 2 0.02
31 103 0.96
32 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (32 bp):
GAAGCTACCACTTTTCACTGATCAGGTAGCCA
Found at i:59023669 original size:437 final size:435
Alignment explanation
Indices: 59022818--59023679 Score: 1392
Period size: 437 Copynumber: 2.0 Consensus size: 435
59022808 TGATTGATAT
* * *
59022818 TGTGACAGCCCGAAATTGACCCTAGTCGGAATGTGGTTTCGGGACCACAAAACCGAGGCATAAAA
1 TGTGACAGCCCAAAATTGACCCTAGTCGGAAGGTGGTCTCGGGACCACAAAACCGAGGCATAAAA
59022883 ATAATTAAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATATATGACATTTTATGATGAT
66 ATAATTAAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATATATGACATTTTATGATGAT
* *
59022948 TGATTTAGTGTTATAAAGGTGAATTCCACTAGAAAGGACTTAGTAGTGAACTTTGAAAGTACGAT
131 TGATTTAGTGTTATAAAGGTGAATTCCACAAGAAAGGACTTAGTAATGAACTTTGAAAGTACGAT
59023013 AGGGAAATGTGTGATGACTAATTAAAGCATGCATGCAAAATAATGGACTTGCATGTCAAATTCCC
196 AGGGAAATGTGTGATGACTAATTAAAGCATGCATGCAAAATAATGGACTTGCATGTCAAATTCCC
* *
59023078 CTTTTTACAAGTGATGGCCGGCCATGACAAAGAGATATGGCTAAACATGTCATGAAACATGTTTT
261 CCTTTTACAAGTGATGGCCGGCCATGACAAAGAGATAGGGCTAAACATGTCATGAAACATGTTTT
* *
59023143 GTTGGGCATTAGGGAGAAATAATAAACAAATAAGCATGGGTAAGAAAAGAATGAAAAAAAATGTG
326 GTTGGGCATTAGGGAGAAATAATAAACAAAGAAGCATGGGTAAGAAAAAAATGAAAAAAAATGTG
59023208 TGTGAGAGAGTAGCATTCCCCCCCCCCCATTGCCGTGCAACCAAGAAG
391 TGTGAGAGAGTA-CATT--CCCCCCCCCATTGCCGTGCAACCAAGAAG
*
59023256 TGTGACAGCCCAAAATTGACCCTAGTCGGAAGGT-GTCTCGGGACCACAAAATCGAGGCATAAAA
1 TGTGACAGCCCAAAATTGACCCTAGTCGGAAGGTGGTCTCGGGACCACAAAACCGAGGCATAAAA
*
59023320 ATAATTAAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATGTATGACATTTTATGATGAT
66 ATAATTAAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATATATGACATTTTATGATGAT
* *
59023385 TGATTTAGTGTTATAAGGGTGAATTCCACAAGAAAGGACTTAGTAATGAACTTTGAAAGTATGAT
131 TGATTTAGTGTTATAAAGGTGAATTCCACAAGAAAGGACTTAGTAATGAACTTTGAAAGTACGAT
59023450 AGGGAAATGTGTGATGACTAATTAAAGCATGCATGCAAAATAATGGACTTGCATGTCAAATTCCC
196 AGGGAAATGTGTGATGACTAATTAAAGCATGCATGCAAAATAATGGACTTGCATGTCAAATTCCC
* * * *
59023515 CCTTTTATAGGTGGTGGCCGGCCATGACAAGGGAGGAT-GGGCTAAACATGTCATGAAACATGTT
261 CCTTTTACAAGTGATGGCCGGCCATGACAA-AGA-GATAGGGCTAAACATGTCATGAAACATGTT
* ** * * *
59023579 TTGTTGGTGCATTAGGGTGAAATAATAAACAAAGGTGTATGGGTGATAAAAAAATGAAAAAAAAA
324 TTGTTGG-GCATTAGGGAGAAATAATAAACAAAGAAGCATGGGTAAGAAAAAAATG-AAAAAAAA
* *
59023644 TGTGTGTGAGTGTGGTA-A-T-CCCCCCCCATTGCCGTG
387 TGTGTGTGAGAG-AGTACATTCCCCCCCCCATTGCCGTG
59023680 AGTTGTAGAG
Statistics
Matches: 394, Mismatches: 25, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
435 17 0.04
437 244 0.62
438 67 0.17
439 44 0.11
440 19 0.05
441 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (435 bp):
TGTGACAGCCCAAAATTGACCCTAGTCGGAAGGTGGTCTCGGGACCACAAAACCGAGGCATAAAA
ATAATTAAAAATTTATTTTGATGCCTATAATATGTGTGTGCTCATATATGACATTTTATGATGAT
TGATTTAGTGTTATAAAGGTGAATTCCACAAGAAAGGACTTAGTAATGAACTTTGAAAGTACGAT
AGGGAAATGTGTGATGACTAATTAAAGCATGCATGCAAAATAATGGACTTGCATGTCAAATTCCC
CCTTTTACAAGTGATGGCCGGCCATGACAAAGAGATAGGGCTAAACATGTCATGAAACATGTTTT
GTTGGGCATTAGGGAGAAATAATAAACAAAGAAGCATGGGTAAGAAAAAAATGAAAAAAAATGTG
TGTGAGAGAGTACATTCCCCCCCCCATTGCCGTGCAACCAAGAAG
Found at i:59025028 original size:40 final size:40
Alignment explanation
Indices: 59024926--59025075 Score: 169
Period size: 40 Copynumber: 3.8 Consensus size: 40
59024916 AAATTGAATG
* * * * *
59024926 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
59024966 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
59025006 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
59025046 AAATCCGGGCTAAGACCCGAAGGCATTTGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGT
59025076 CCAAATCGTG
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 88 0.94
41 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:59025092 original size:40 final size:38
Alignment explanation
Indices: 59024922--59025109 Score: 155
Period size: 40 Copynumber: 4.8 Consensus size: 38
59024912 TGAGAAATTG
* * *
59024922 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
59024962 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
59024999 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
59025039 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTCCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
59025079 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
59025110 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 4 0.03
40 109 0.91
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:59028265 original size:40 final size:40
Alignment explanation
Indices: 59028138--59028267 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
59028128 ATGCTGGAAA
* *
59028138 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
59028178 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
59028218 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
59028258 TTATATCCGG
1 TTATATCCGG
59028268 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:59028266 original size:80 final size:79
Alignment explanation
Indices: 59028101--59028267 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
59028091 CAATTGAATG
* *
59028101 ATATCCGGGCTAAGTCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
59028166 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * ** *
59028180 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
59028244 -ATTCGTGC-ACGTGGTT
64 AATT-GTGCTA-GTGGCT
59028260 ATATCCGG
1 ATATCCGG
59028268 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 29 0.39
80 45 0.61
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:59036168 original size:124 final size:124
Alignment explanation
Indices: 59035946--59036170 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
59035936 GAATTATGTG
* * ** * * *
59035946 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
59036011 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
59036070 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
59036135 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
59036171 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:59036292 original size:40 final size:40
Alignment explanation
Indices: 59036165--59036294 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
59036155 ATGCTGGAAA
* *
59036165 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
59036205 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
59036245 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
59036285 TTATATCCGG
1 TTATATCCGG
59036295 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:59036293 original size:80 final size:80
Alignment explanation
Indices: 59036127--59036294 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
59036117 CAATTGAATG
* * *
59036127 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
59036192 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
59036207 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
59036271 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
59036287 ATATCCGG
1 ATATCCGG
59036295 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:59052999 original size:15 final size:15
Alignment explanation
Indices: 59052966--59052999 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
59052956 AGTTATGTCT
*
59052966 ATGTATGGAATTATA
1 ATGTATGGAATTAGA
*
59052981 ATGTATGGAATTAGC
1 ATGTATGGAATTAGA
59052996 ATGT
1 ATGT
59053000 CAAAAAGATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (15 bp):
ATGTATGGAATTAGA
Found at i:59053991 original size:16 final size:16
Alignment explanation
Indices: 59053966--59053998 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
59053956 ACGGTATTCT
*
59053966 ATATTTTATAGTAGCA
1 ATATTCTATAGTAGCA
59053982 ATATTCTATAGTAGCA
1 ATATTCTATAGTAGCA
59053998 A
1 A
59053999 AGGAATAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (16 bp):
ATATTCTATAGTAGCA
Found at i:59060852 original size:27 final size:26
Alignment explanation
Indices: 59060822--59060883 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
59060812 TTTTATTAAA
* * *
59060822 ATACCCCTAAGTATAAAAATTACCATT
1 ATACCCCTAAGT-GAAAAATGACCATG
* *
59060849 ATACCCCTAGGTGCAAAATGACCATG
1 ATACCCCTAAGTGAAAAATGACCATG
59060875 ATACCCCTA
1 ATACCCCTA
59060884 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (26 bp):
ATACCCCTAAGTGAAAAATGACCATG
Found at i:59061058 original size:27 final size:26
Alignment explanation
Indices: 59060987--59061101 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
59060977 TGGAGGAAGC
59060987 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
59061014 GTTTCTGGTGGCTATGCCACAAACATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
*
59061042 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
59061068 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
59061095 GTTCTGG
1 GTTCTGG
59061102 CAGCCATGCT
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
26 13 0.16
27 42 0.52
28 26 0.32
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:59063690 original size:43 final size:43
Alignment explanation
Indices: 59063533--59063696 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
59063523 TATGTGTTTC
* * *
59063533 CATGTGAGACCACGTCTGGGACGTTGGCATCGAATTATGTTTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGTATTATG-ATTA
* * * * * *
59063577 CGTGTAAGACCATGTCTGGGACATCGGCATCGTA-TCTGATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGTATTATGATTA
* * *
59063619 CGTGTAAGACC-CTTTCTGGGACAG-TGGCATC-TATGTTTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGTAT-TATGATTA
* *
59063662 CATGTAAGACCACGTCTAGGACGTTGGCATTGTAT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGTAT
59063697 ATGTTCTCTG
Statistics
Matches: 94, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
41 2 0.02
42 28 0.30
43 32 0.34
44 32 0.34
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGTATTATGATTA
Found at i:59066469 original size:13 final size:13
Alignment explanation
Indices: 59066451--59066475 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59066441 ATCACTCTAT
59066451 AAATATTTAATAA
1 AAATATTTAATAA
59066464 AAATATTTAATA
1 AAATATTTAATA
59066476 GCTCGGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATATTTAATAA
Found at i:59079793 original size:28 final size:28
Alignment explanation
Indices: 59079732--59079801 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
59079722 AATGAGATTG
59079732 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
* *
59079760 GAACTAAGTGTGCGAGTTTGACTAT-TA-A
1 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
59079788 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
59079802 GACTTACTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 32 0.86
29 4 0.11
30 1 0.03
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:59085402 original size:29 final size:28
Alignment explanation
Indices: 59085351--59085405 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
59085341 ATCTGAAGTA
59085351 CTGATATCATGGTCCGAAACCAAATCAG
1 CTGATATCATGGTCCGAAACCAAATCAG
*
59085379 CTGATATTCATGG-CCTGAAGCCAAATC
1 CTGATA-TCATGGTCC-GAAACCAAATC
59085406 GGAATAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (28 bp):
CTGATATCATGGTCCGAAACCAAATCAG
Found at i:59087260 original size:40 final size:40
Alignment explanation
Indices: 59087159--59087303 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
59087149 TACTCGAATG
* *
59087159 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTACTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
59087200 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
59087240 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
59087280 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
59087304 CTTGGGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:59095186 original size:40 final size:40
Alignment explanation
Indices: 59095085--59095229 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
59095075 TACTCGAATG
* *
59095085 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
59095126 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
59095166 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
59095206 ATATCCGGGCTAAGACCTGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
59095230 CTTGGGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:59097225 original size:2 final size:2
Alignment explanation
Indices: 59097218--59097254 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
59097208 AGTTGAATCC
59097218 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
59097255 ATGTTGAGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:59098289 original size:176 final size:176
Alignment explanation
Indices: 59097995--59098352 Score: 554
Period size: 176 Copynumber: 2.0 Consensus size: 176
59097985 ATCTAGGTTG
* * *
59097995 GGTTGGGGAGGTTACACTAGAGGAGAAAGGCAAACTAACATTGACCAAAACACCAGGAGGTTTAG
1 GGTTGGGGAGGTTACACTAGAGGAGAAAGGCAAACTAACACTAACCAAAACACCAGGAGGCTTAG
** * *
59098060 AAACTAACCAAAGATGTTGATTGGGTCTTAGCTTAGTTGGCATCAACATTGTTGCCAATGCAAGA
66 AAACTAACCAAAGATGTTGATTAAGTCTTAGCTCAATTGGCATCAACATTGTTGCCAATGCAAGA
* *
59098125 GGACATAAGTTCAAGTGTACTGAAGCACATTATCCTCTTATTTAAA
131 GGACATAAGTTCAAATGCACTGAAGCACATTATCCTCTTATTTAAA
* *
59098171 GGTTGGGGAGGTTACACTAGAGGAGAAAGGCAAACTAACACTAACCACAACACTAGGAGGCTTAG
1 GGTTGGGGAGGTTACACTAGAGGAGAAAGGCAAACTAACACTAACCAAAACACCAGGAGGCTTAG
*
59098236 AAACTAACCAAAGATGTTGATTAAGTCTTAGCTCAATTGGCATCAACATTGTTGCCAATGCAATA
66 AAACTAACCAAAGATGTTGATTAAGTCTTAGCTCAATTGGCATCAACATTGTTGCCAATGCAAGA
* ** * * *
59098301 GGACGTGGGTTTAAATGCACTGAAGCGCATTATCCTCTTATTTAAG
131 GGACATAAGTTCAAATGCACTGAAGCACATTATCCTCTTATTTAAA
59098347 GGTTGG
1 GGTTGG
59098353 AAAGGGGTTG
Statistics
Matches: 164, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
176 164 1.00
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (176 bp):
GGTTGGGGAGGTTACACTAGAGGAGAAAGGCAAACTAACACTAACCAAAACACCAGGAGGCTTAG
AAACTAACCAAAGATGTTGATTAAGTCTTAGCTCAATTGGCATCAACATTGTTGCCAATGCAAGA
GGACATAAGTTCAAATGCACTGAAGCACATTATCCTCTTATTTAAA
Found at i:59098911 original size:13 final size:13
Alignment explanation
Indices: 59098895--59098919 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59098885 TTATTTTCAT
59098895 TTTTTAAAAATTA
1 TTTTTAAAAATTA
59098908 TTTTTAAAAATT
1 TTTTTAAAAATT
59098920 TTAACTTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTTAAAAATTA
Found at i:59110776 original size:27 final size:27
Alignment explanation
Indices: 59110739--59110859 Score: 165
Period size: 27 Copynumber: 4.4 Consensus size: 27
59110729 AGCATGGCTG
* *
59110739 CCAGAACAGATAAT-GTGACAGAGTCA
1 CCAGAACAGATAATCGTGGCAGAGCCA
*
59110765 CCAGATACAGATAATCGTGGCAGGGCCA
1 CCAGA-ACAGATAATCGTGGCAGAGCCA
59110793 CCAGAACAGATATAT-GTGGCAGAGCCA
1 CCAGAACAGATA-ATCGTGGCAGAGCCA
*
59110820 CCAGATACAGATAATCGTGGCAGGGCCA
1 CCAGA-ACAGATAATCGTGGCAGAGCCA
59110848 CCAGAACAGATA
1 CCAGAACAGATA
59110860 TGTAACGCCC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
26 5 0.06
27 41 0.48
28 39 0.46
ACGTcount: A:0.37, C:0.23, G:0.26, T:0.14
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGGCAGAGCCA
Found at i:59110822 original size:55 final size:55
Alignment explanation
Indices: 59110739--59110860 Score: 219
Period size: 55 Copynumber: 2.2 Consensus size: 55
59110729 AGCATGGCTG
*
59110739 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGGGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGGGCCA
*
59110793 CCAGAACAGATATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGGGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGGGCCA
59110848 CCAGAACAGATAT
1 CCAGAACAGATAT
59110861 GTAACGCCCC
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
54 12 0.18
55 53 0.82
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (55 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGGGCCA
Found at i:59112278 original size:93 final size:93
Alignment explanation
Indices: 59112166--59112338 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
59112156 CGCCCATAAG
* *
59112166 CGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTC
59112230 AACGAGCTCAGATGCCTAGTTACATCTCA
65 AACGAGCTCAGATGCCTAGTTACATCTCA
* *
59112259 CGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCATATGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
59112324 ACGAGTTCGGATGCC
66 ACGAGCTCAGATGCC
59112339 CAAATGTCCA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCA
Found at i:59112329 original size:46 final size:46
Alignment explanation
Indices: 59112167--59112337 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
59112157 GCCCATAAGC
** * *
59112167 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAG-TTCGGATGCTCGCATCCATATGT
* * * * * * **
59112213 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAG-TTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATG-CTCGCATCCATAT-GT
59112260 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCATATGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCATATGT
59112306 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
59112338 CCAAATGTCC
Statistics
Matches: 101, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
45 1 0.01
46 64 0.63
47 36 0.36
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCATATGT
Found at i:59114293 original size:30 final size:30
Alignment explanation
Indices: 59114249--59114337 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
59114239 CAAAGATAAC
*
59114249 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
59114278 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
59114308 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
59114338 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:59114297 original size:15 final size:14
Alignment explanation
Indices: 59114249--59114331 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
59114239 CAAAGATAAC
*
59114249 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
59114263 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
59114278 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
59114293 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
59114308 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
59114323 AAGAAACCC
1 AAGAAACCC
59114332 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Done.