Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 191 of 433
Found at i:60011240 original size:39 final size:39
Alignment explanation
Indices: 60011186--60011348 Score: 229
Period size: 39 Copynumber: 4.2 Consensus size: 39
60011176 TGTGAATGAA
*
60011186 TGTGCGAATTGTGATATCCGGGCTGAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
60011225 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
60011264 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
60011303 TGTGTGAGTTGTGATATCC-GGCTTAAGTCACGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGC-TAAG-CCCGAAGGCAAT
60011343 TGTGCG
1 TGTGCG
60011349 GGTTACCATA
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 3 0.03
39 94 0.84
40 15 0.13
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:60018836 original size:39 final size:39
Alignment explanation
Indices: 60018793--60018903 Score: 168
Period size: 39 Copynumber: 2.8 Consensus size: 39
60018783 GTGCGAATTG
*
60018793 TGATATCCGGGCTGAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
60018832 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
60018871 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTG
60018904 TGGGTTACCA
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 51 0.77
40 15 0.23
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:60031645 original size:40 final size:40
Alignment explanation
Indices: 60031560--60031710 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
60031550 AATTGAATGA
* * *
60031560 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
60031600 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
60031641 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
60031680 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
60031711 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:60031724 original size:40 final size:40
Alignment explanation
Indices: 60031597--60031726 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
60031587 ATGCTGGAAA
* * * *
60031597 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
60031637 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
60031677 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
60031717 TTATATCCGG
1 TTATATCCGG
60031727 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:60038494 original size:24 final size:24
Alignment explanation
Indices: 60038462--60038523 Score: 106
Period size: 24 Copynumber: 2.5 Consensus size: 24
60038452 AGCCATAATC
60038462 AGAATGTTCACAAAGAACCTTATCG
1 AGAA-GTTCACAAAGAACCTTATCG
*
60038487 GGAAGTTCACAAAGAACCTTATCG
1 AGAAGTTCACAAAGAACCTTATCG
60038511 AGAAGTTCACAAA
1 AGAAGTTCACAAA
60038524 TATCCATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 32 0.91
25 3 0.09
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (24 bp):
AGAAGTTCACAAAGAACCTTATCG
Found at i:60044686 original size:53 final size:49
Alignment explanation
Indices: 60044565--60044687 Score: 140
Period size: 50 Copynumber: 2.4 Consensus size: 49
60044555 ACATTTAATA
* **
60044565 AAGTTATGCATTATGTAACTTTCATGTTAGTTAAGTTTGCATCATAAAT
1 AAGTCATGCATTATGTAACTCCCATGTTAGTTAAGTTTGCATCATAAAT
* *
60044614 AATGACATGCATTATGTAACTCCCATGTTAGTTAACGTTTGCATCTTTAAAATT
1 AA-GTCATGCATTATGTAACTCCCATGTTAGTTAA-GTTTGCATC-AT-AAA-T
60044668 AAGTCATGCATTCA-GTAACT
1 AAGTCATGCATT-ATGTAACT
60044688 TATTTGTTCA
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
49 2 0.03
50 28 0.45
51 9 0.15
52 1 0.02
53 18 0.29
54 4 0.06
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39
Consensus pattern (49 bp):
AAGTCATGCATTATGTAACTCCCATGTTAGTTAAGTTTGCATCATAAAT
Found at i:60048914 original size:31 final size:31
Alignment explanation
Indices: 60048876--60048940 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
60048866 ATATGTTAAA
* * * *
60048876 GTTAGTTTATGTATGTGTGTTATTTGATTTG
1 GTTAGTTTATGTATGAGTGCTATTTAATATG
60048907 GTTAGTTTATGTATGAGTGCTATTTAATATG
1 GTTAGTTTATGTATGAGTGCTATTTAATATG
60048938 GTT
1 GTT
60048941 GTTATTTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.20, C:0.02, G:0.25, T:0.54
Consensus pattern (31 bp):
GTTAGTTTATGTATGAGTGCTATTTAATATG
Found at i:60050510 original size:28 final size:29
Alignment explanation
Indices: 60050464--60050518 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
60050454 ACCAATCTCT
*
60050464 TTCATATGACCCATTAGGCCCAAATCATA
1 TTCATATGACCCACTAGGCCCAAATCATA
*
60050493 TTCATATG-GCCACTAGGCCCAAATCA
1 TTCATATGACCCACTAGGCCCAAATCA
60050519 CATTTACAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (29 bp):
TTCATATGACCCACTAGGCCCAAATCATA
Found at i:60052079 original size:14 final size:14
Alignment explanation
Indices: 60052060--60052088 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
60052050 AACTTTATCA
60052060 TTTAAAAATTAAGT
1 TTTAAAAATTAAGT
60052074 TTTAAAAATTAAGT
1 TTTAAAAATTAAGT
60052088 T
1 T
60052089 GCGGAAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
TTTAAAAATTAAGT
Found at i:60053153 original size:29 final size:29
Alignment explanation
Indices: 60053055--60053155 Score: 107
Period size: 28 Copynumber: 3.6 Consensus size: 29
60053045 TACTTGTATC
* * * *
60053055 TGGCCCATTAAGCCC-AATCATATTCAGA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
60053083 TGGCCCATTAGGCCCAGATCAC-TGTATG
1 TGGCCCATTAGGCCCAAATCACATTTATA
**
60053111 TGGCATATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
60053140 TGGCCCATTAGGCCCA
1 TGGCCCATTAGGCCCA
60053156 GTTACATTCA
Statistics
Matches: 57, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 35 0.61
29 22 0.39
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:60053249 original size:17 final size:18
Alignment explanation
Indices: 60053227--60053260 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60053217 TGCCTATTAT
60053227 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
60053244 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
60053261 TCTGGCCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:60054889 original size:16 final size:16
Alignment explanation
Indices: 60054870--60054900 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60054860 AATTTTGAGA
*
60054870 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
60054886 TTTCGAGATTTTTGG
1 TTTCGAGATTTTTGG
60054901 AGCGTTACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.32, T:0.52
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:60061593 original size:40 final size:40
Alignment explanation
Indices: 60061486--60061653 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
60061476 CGGAATATAA
* * *
60061486 CCGGATATAATCACGT-GCACAAATGCCTTCAGGTCTTAGC
1 CCGGATATAATAAC-TAGCACAATTGCCTTCGGGTCTTAGC
* *
60061526 CCGGATAGAATAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTAGCAC-AATTGCCTTCGGGTCTTAGC
*** *
60061566 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
* ** * * * *
60061606 CCAGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
60061646 CCGGATAT
1 CCGGATAT
60061654 CATTCAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:60066285 original size:50 final size:48
Alignment explanation
Indices: 60066171--60066492 Score: 185
Period size: 46 Copynumber: 6.8 Consensus size: 48
60066161 CATGGGTAAA
* * *
60066171 GTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCTTC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTAC
* *
60066219 GAGGCCGATGCCATGTCCCAGGA-ATGGTCTTACACTAGCTCTCA-CATAAC
1 G-TGCCGATGCCATGTCCCA-GACATGGTCTTACACTAGCTATCATC-T-AC
*
60066269 TGTGCCGATGCCATGTCCCAGACATGGTCTTACAC-AGAC-A-CATCT-T
1 -GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCATCTAC
* * * * *
60066315 GTAGCCGATG-TATGTCCCAGACAT-GTCTTATACTGGCT-TACGTC-CC
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAT-CATCTAC
* * * * *
60066361 GAGGCTGAT-ACATGT-CCA-AGATGTGTCTTACACTAGC-A-CTAGTCTCC
1 G-TGCCGATGCCATGTCCCAGACATG-GTCTTACACTAGCTATC-A-TCTAC
* * * * * * * *
60066408 ATGTCGATACCATGTCCCAGACATGGTCTTATACTGGCTCTCAT-AAT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTAC
60066455 GTGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
60066493 CACACAAATG
Statistics
Matches: 209, Mismatches: 37, Indels: 58
0.69 0.12 0.19
Matches are distributed among these distances:
44 13 0.06
45 19 0.09
46 49 0.23
47 22 0.11
48 25 0.12
49 46 0.22
50 34 0.16
51 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (48 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTAC
Found at i:60070192 original size:5 final size:5
Alignment explanation
Indices: 60070182--60070206 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
60070172 TTTGACTAAG
60070182 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
60070207 AATAAACAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:60085491 original size:27 final size:27
Alignment explanation
Indices: 60085453--60085581 Score: 150
Period size: 27 Copynumber: 4.8 Consensus size: 27
60085443 AGAGATCGTT
* * **
60085453 AAATGACCGTAATGCCCCTATAGGGTA
1 AAATGATCGTAATGCCCCTGTAAAGTA
* *
60085480 AAATGATTGTAATGCTCCTGTAAAGTA
1 AAATGATCGTAATGCCCCTGTAAAGTA
* * *
60085507 AAATGACCGTAATGCCTCTGTAAGGTA
1 AAATGATCGTAATGCCCCTGTAAAGTA
*
60085534 AAATGATCGTAATGCCCCTGTAGAGTA
1 AAATGATCGTAATGCCCCTGTAAAGTA
* *
60085561 AAATGACCGTAATGTCCCTGT
1 AAATGATCGTAATGCCCCTGT
60085582 GTAACACCCC
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (27 bp):
AAATGATCGTAATGCCCCTGTAAAGTA
Found at i:60085535 original size:54 final size:54
Alignment explanation
Indices: 60085453--60085579 Score: 191
Period size: 54 Copynumber: 2.4 Consensus size: 54
60085443 AGAGATCGTT
* * *
60085453 AAATGACCGTAATGCCCCTATAGGGTAAAATGATTGTAATGCTCCTGTAAAGTA
1 AAATGACCGTAATGCCCCTATAAGGTAAAATGATCGTAATGCCCCTGTAAAGTA
* * *
60085507 AAATGACCGTAATGCCTCTGTAAGGTAAAATGATCGTAATGCCCCTGTAGAGTA
1 AAATGACCGTAATGCCCCTATAAGGTAAAATGATCGTAATGCCCCTGTAAAGTA
*
60085561 AAATGACCGTAATGTCCCT
1 AAATGACCGTAATGCCCCT
60085580 GTGTAACACC
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (54 bp):
AAATGACCGTAATGCCCCTATAAGGTAAAATGATCGTAATGCCCCTGTAAAGTA
Found at i:60086989 original size:40 final size:40
Alignment explanation
Indices: 60086944--60087111 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
60086934 CGGAATATAA
60086944 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
60086984 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
60087024 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60087064 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
60087104 CCGGATAT
1 CCGGATAT
60087112 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60087094 original size:80 final size:80
Alignment explanation
Indices: 60086960--60087109 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
60086950 ATAATCACGT
*
60086960 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
60087024 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
60087040 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
60087103 CCCGGAT
64 CCCGGAT
60087110 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:60087690 original size:27 final size:27
Alignment explanation
Indices: 60087652--60087707 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
60087642 CCTTTATAAC
60087652 ACTAAATCAATCATCAAAAAATGTCAT
1 ACTAAATCAATCATCAAAAAATGTCAT
60087679 ACTAAATCAATCATCAAAAAATGTCAT
1 ACTAAATCAATCATCAAAAAATGTCAT
60087706 AC
1 AC
60087708 ATGAATACTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.52, C:0.20, G:0.04, T:0.25
Consensus pattern (27 bp):
ACTAAATCAATCATCAAAAAATGTCAT
Found at i:60094037 original size:40 final size:40
Alignment explanation
Indices: 60093992--60094159 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
60093982 CGGAATATAA
60093992 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
60094032 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
60094072 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
60094112 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
60094152 CCGGATAT
1 CCGGATAT
60094160 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60094142 original size:80 final size:80
Alignment explanation
Indices: 60094008--60094157 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
60093998 ATAATCACGT
*
60094008 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
60094072 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
60094088 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
60094151 CCCGGAT
64 CCCGGAT
60094158 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:60094871 original size:27 final size:27
Alignment explanation
Indices: 60094839--60094909 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
60094829 GGCTGTCACA
* *
60094839 CCCTGTAGGGTAAAATGACCGTAATGC
1 CCCTGTACGGTAAAATGACCGTAATAC
60094866 CCCTGTACGGTAAAATGACCGTAATAC
1 CCCTGTACGGTAAAATGACCGTAATAC
*
60094893 CCCTGTATGGTAAAATG
1 CCCTGTACGGTAAAATG
60094910 TCGATTATGC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (27 bp):
CCCTGTACGGTAAAATGACCGTAATAC
Found at i:60095128 original size:26 final size:27
Alignment explanation
Indices: 60095047--60095146 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 27
60095037 ATGGAGGAAG
* *
60095047 TACT-ATACTGGTGACTATGTCACATT
1 TACTGATACTGGTGGCTATGCCACATT
* * *
60095073 CACTGTTACTGGTGGCTATGCCACAAT
1 TACTGATACTGGTGGCTATGCCACATT
*
60095100 TACTGATACTGGTTGCT-TGCCACATT
1 TACTGATACTGGTGGCTATGCCACATT
* * *
60095126 TACTGTTTCTGGTAGCTATGC
1 TACTGATACTGGTGGCTATGC
60095147 TGCACTATTA
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
26 25 0.42
27 35 0.58
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACATT
Found at i:60095358 original size:33 final size:33
Alignment explanation
Indices: 60095321--60095419 Score: 110
Period size: 33 Copynumber: 3.0 Consensus size: 33
60095311 CCCACATTGT
* * *
60095321 TACTGTATAGGGCTAAAG-CCCCGACTGTTCTGG
1 TACTGTATAGGGCT-AAGTCCCAGACTGTACTGA
60095354 TACTGTATAGGGCTAAGTCCCAGACTGTACTGA
1 TACTGTATAGGGCTAAGTCCCAGACTGTACTGA
* * * *
60095387 TACTGGATAGGGCTTAGGCCTAGACTGTTACTG
1 TACTGTATAGGGCTAAGTCCCAGACTG-TACTG
60095420 CATGCATTGT
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
32 3 0.05
33 49 0.86
34 5 0.09
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (33 bp):
TACTGTATAGGGCTAAGTCCCAGACTGTACTGA
Found at i:60097051 original size:27 final size:26
Alignment explanation
Indices: 60097003--60097062 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
60096993 ACGAGGCTGC
*
60097003 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
60097030 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
60097056 CAGATAT
1 CAGATAT
60097063 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:60110323 original size:16 final size:17
Alignment explanation
Indices: 60110302--60110334 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
60110292 CATATAGATG
60110302 AATATA-TATACACATT
1 AATATAGTATACACATT
60110318 AATATATGTATACACAT
1 AATATA-GTATACACAT
60110335 GTTTCAGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.36
Consensus pattern (17 bp):
AATATAGTATACACATT
Found at i:60110807 original size:43 final size:43
Alignment explanation
Indices: 60110590--60110808 Score: 298
Period size: 43 Copynumber: 5.1 Consensus size: 43
60110580 CGTACAGTGT
* * * * *
60110590 CAACGTCCTAGACATGGTCTTATATGTAATCACGTATCGATGC
1 CAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
* *
60110633 C-ACTGTCCCAGATAG-GGTCTTACACATAATCACATATCGATGC
1 CAAC-GTCCCAGA-CGTGGTCTTACACGTAATCACATATCGATGC
60110676 CAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
1 CAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
* *
60110719 CAATGTCCCAGACGTGGTCTTACACGTAATCACATATTGATGC
1 CAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
* * *
60110762 CAACATCCCAGATGTGGTCTTACATGTAATCACATATCGATGC
1 CAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
60110805 CAAC
1 CAAC
60110809 TAAAAAATGT
Statistics
Matches: 156, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
42 3 0.02
43 151 0.97
44 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
CAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
Found at i:60117812 original size:43 final size:43
Alignment explanation
Indices: 60117591--60117813 Score: 297
Period size: 43 Copynumber: 5.2 Consensus size: 43
60117581 ATATCGTACA
* * *
60117591 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTTTTACACGTAATCACATATCG
* * *
60117634 ATGCC-ACTGTCCCAGGCAG-GGTCTTACATGTAATCACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTTTTACACGTAATCACATATCG
* *
60117677 ATGCCAAAGTCCCAGATGTGGTTTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTTTTACACGTAATCACATATCG
* * *
60117720 ATGCCAACATCCCAAACATGGTTTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTTTTACACGTAATCACATATCG
* *
60117763 ATGCCAACGTCCCAGACGTGGTTTTACACGTAATCATATATCT
1 ATGCCAACGTCCCAGACGTGGTTTTACACGTAATCACATATCG
60117806 ATGCCAAC
1 ATGCCAAC
60117814 TCAAAAATGT
Statistics
Matches: 159, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
42 3 0.02
43 154 0.97
44 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTTTTACACGTAATCACATATCG
Found at i:60120337 original size:42 final size:43
Alignment explanation
Indices: 60120246--60120358 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 43
60120236 CAATGTCGAC
* * * **
60120246 GTCCCAAACATGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATCAATATCGATGCCAAT
* *
60120289 ATCCCAGACAGGGTCTTACACG-AAATCAGATA-CGATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAAATCA-ATATCGATGCCAAT
60120331 GTCCCAGACATGGTCTTACACGTAAATC
1 GTCCCAGACATGGTCTTACACGTAAATC
60120359 TCAATTAAGG
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 33 0.56
43 26 0.44
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATCAATATCGATGCCAAT
Found at i:60123753 original size:40 final size:40
Alignment explanation
Indices: 60123705--60123869 Score: 237
Period size: 40 Copynumber: 4.2 Consensus size: 40
60123695 GGACTAAGAT
*
60123705 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
60123745 CCGAAGGCATTTGTGCTAGTGACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
60123785 CCGAAGGCATTTGTGCTAGTGACTATGT-CGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
60123824 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
60123863 CCGAAGG
1 CCGAAGG
60123870 TACTTGGGTT
Statistics
Matches: 114, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 46 0.40
40 68 0.60
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:60123850 original size:79 final size:79
Alignment explanation
Indices: 60123705--60123869 Score: 235
Period size: 79 Copynumber: 2.1 Consensus size: 79
60123695 GGACTAAGAT
* * *
60123705 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTA
* *
60123770 TATCTGGGCTAAGTC
66 TATC-CGGCTAAATC
*
60123785 CCGAAGGCATTTGTGCTAGTGACTATGT-CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTG-CT
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAG-TGACT
*
60123848 ATATCCGGCTAAATT
65 ATATCCGGCTAAATC
60123863 CCGAAGG
1 CCGAAGG
60123870 TACTTGGGTT
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
78 14 0.18
79 35 0.45
80 28 0.36
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTA
TATCCGGCTAAATC
Found at i:60131657 original size:40 final size:40
Alignment explanation
Indices: 60131605--60131770 Score: 228
Period size: 40 Copynumber: 4.2 Consensus size: 40
60131595 GGACTAAGAT
*
60131605 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
60131645 CCGAAGGGATTTGTGCTAGTGACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
60131685 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * * *
60131725 CTGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
60131764 CCGAAGG
1 CCGAAGG
60131771 TACTTGGGTT
Statistics
Matches: 112, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 13 0.12
40 97 0.87
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:60142729 original size:30 final size:30
Alignment explanation
Indices: 60142694--60142757 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
60142684 AACCAAAATG
*
60142694 TAAACTAATAAATTCACAAATAAGACTTTA
1 TAAACTAACAAATTCACAAATAAGACTTTA
*
60142724 TAAACTAACAAATTCACAAATAAGACTTTT
1 TAAACTAACAAATTCACAAATAAGACTTTA
60142754 TAAA
1 TAAA
60142758 ATAGTCCCCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.53, C:0.14, G:0.03, T:0.30
Consensus pattern (30 bp):
TAAACTAACAAATTCACAAATAAGACTTTA
Found at i:60145791 original size:42 final size:42
Alignment explanation
Indices: 60145679--60145798 Score: 170
Period size: 43 Copynumber: 2.8 Consensus size: 42
60145669 GGAAAGCTCG
*
60145679 TACAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAA
* * * *
60145721 TATCGATGCCACTATGCCAGACAG-GGTCTTACATGAAATCAAA
1 TA-CAATGCCAATGTCCCAGAC-GTGGTCTTACATGAAATCAAA
60145764 TACAATGCCAATGTCCCAGACGTGGTCTTACATGA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACATGA
60145799 TAACACATAT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
41 1 0.02
42 29 0.44
43 35 0.53
44 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACGTGGTCTTACATGAAATCAAA
Found at i:60151269 original size:46 final size:46
Alignment explanation
Indices: 60151202--60151470 Score: 249
Period size: 46 Copynumber: 5.8 Consensus size: 46
60151192 TGTAACCCGC
* * *
60151202 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGG-GCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGC-TTCGCAT
* * * * *
60151248 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCTTCGCAT
* ***
60151294 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGAGC-TTCGCAT
* * * *
60151341 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCTTCGCAT
* *** * *
60151387 ACATCTCTCGAGCTCGGACTCAACTCAACGAGTTCGGAGATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGAGCTTCGCAT
*
60151434 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60151471 TGCCCAAATA
Statistics
Matches: 177, Mismatches: 37, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 105 0.59
47 68 0.38
48 3 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCTTCGCAT
Found at i:60151331 original size:47 final size:47
Alignment explanation
Indices: 60151256--60151424 Score: 202
Period size: 47 Copynumber: 3.6 Consensus size: 47
60151246 ATCCATAAGT
* *
60151256 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCTC
* * ***
60151303 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACATCTCTC
*
60151349 GAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCTC
*
60151396 GAGCTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
60151425 GATTCGCATC
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 32 0.32
47 58 0.58
49 4 0.04
50 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:60151338 original size:93 final size:93
Alignment explanation
Indices: 60151209--60151474 Score: 442
Period size: 93 Copynumber: 2.9 Consensus size: 93
60151199 CGCCCATAAG
* * * *
60151209 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
60151274 ATGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGTTCGGATGCCTAGTTACATCTCT
*
60151302 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60151367 ACGAGTTCGGATGCCTAGTTACATCTCT
66 ACGAGTTCGGATGCCTAGTTACATCTCT
* * *
60151395 CGAGCTCGGACTCAACTCAACGAGTTCGGAGATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60151460 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
60151475 CAAATATCCC
Statistics
Matches: 162, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 162 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCT
Found at i:60153891 original size:15 final size:16
Alignment explanation
Indices: 60153864--60153926 Score: 69
Period size: 15 Copynumber: 4.1 Consensus size: 16
60153854 CAAGGAAACC
*
60153864 GAATAAGGAAATCCAA
1 GAATAAAGAAATCCAA
*
60153880 G-ATAGAGAAATCC-A
1 GAATAAAGAAATCCAA
*
60153894 GAATAAAGAAAT-CTA
1 GAATAAAGAAATCCAA
*
60153909 GAATAAAGAAACCCAA
1 GAATAAAGAAATCCAA
60153925 GA
1 GA
60153927 TATGATACTA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
14 3 0.08
15 31 0.79
16 5 0.13
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (16 bp):
GAATAAAGAAATCCAA
Found at i:60156854 original size:46 final size:45
Alignment explanation
Indices: 60156787--60156955 Score: 198
Period size: 46 Copynumber: 3.7 Consensus size: 45
60156777 TGTAACCCGC
60156787 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
60156833 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * *
60156879 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
60156926 CCATAAGTGAACT-GGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
60156956 TCAGATGCCA
Statistics
Matches: 102, Mismatches: 16, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
45 18 0.18
46 48 0.47
47 34 0.33
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:60156907 original size:93 final size:91
Alignment explanation
Indices: 60156795--60156964 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 91
60156785 GCCCATAAGT
* *
60156795 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACT-GGACTCAACTCAA
*
60156860 CGAGCTCGGATGCCTAGTTACATCTCTC
65 CGAG-TCAGATGCCTAGTTACATCTCTC
*
60156888 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTGGACTCAACTCAAC
60156953 GAGTCAGATGCC
66 GAGTCAGATGCC
60156965 ACAGACTCGG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 8 0.11
92 17 0.23
93 48 0.66
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTGGACTCAACTCAAC
GAGTCAGATGCCTAGTTACATCTCTC
Found at i:60156997 original size:34 final size:37
Alignment explanation
Indices: 60156926--60157037 Score: 110
Period size: 34 Copynumber: 3.1 Consensus size: 37
60156916 ACATTCGCAT
60156926 CCATAAGTGAACT-GGACTCAACTCAACGAG-TCAGATG
1 CCATAAGT--ACTCGGACTCAACTCAACGAGTTCAGATG
*
60156963 CCA-CAG-ACTCGGACTCAACTCAACGAGTTC-GATG
1 CCATAAGTACTCGGACTCAACTCAACGAGTTCAGATG
* *
60156997 CATCCATAAGTACTCGAACT-AACTCAACGAGTTCGGATG
1 ---CCATAAGTACTCGGACTCAACTCAACGAGTTCAGATG
60157036 CC
1 CC
60157038 CATCCTAGTG
Statistics
Matches: 64, Mismatches: 3, Indels: 17
0.76 0.04 0.20
Matches are distributed among these distances:
33 3 0.05
34 21 0.33
35 2 0.03
36 4 0.06
37 6 0.09
38 16 0.25
39 12 0.19
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (37 bp):
CCATAAGTACTCGGACTCAACTCAACGAGTTCAGATG
Found at i:60159454 original size:15 final size:15
Alignment explanation
Indices: 60159436--60159470 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
60159426 TTCAAGATAG
60159436 AGAAATCCAGAATAA
1 AGAAATCCAGAATAA
60159451 AGAAATCCAGAATAA
1 AGAAATCCAGAATAA
60159466 AGAAA
1 AGAAA
60159471 CCCAAGATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.63, C:0.11, G:0.14, T:0.11
Consensus pattern (15 bp):
AGAAATCCAGAATAA
Found at i:60160486 original size:23 final size:23
Alignment explanation
Indices: 60160456--60160502 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
60160446 TTTTCTAGAT
60160456 AGCTTTACTTATCCATTCATTTA
1 AGCTTTACTTATCCATTCATTTA
60160479 AGCTTTACTTATCCATTCATTTA
1 AGCTTTACTTATCCATTCATTTA
60160502 A
1 A
60160503 TTAATTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.04, T:0.47
Consensus pattern (23 bp):
AGCTTTACTTATCCATTCATTTA
Found at i:60162544 original size:75 final size:75
Alignment explanation
Indices: 60162421--60162560 Score: 244
Period size: 75 Copynumber: 1.9 Consensus size: 75
60162411 CGCCCATAAG
* *
60162421 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60162486 TTACATCTCT
66 TTACATCTCT
* *
60162496 CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60162561 ACGAGTTCGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 61 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.22
Consensus pattern (75 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
TTACATCTCT
Found at i:60166026 original size:18 final size:18
Alignment explanation
Indices: 60166002--60166056 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
60165992 CGTTGTCCAT
60166002 CAATCGTCCCTTTTCTCA
1 CAATCGTCCCTTTTCTCA
*
60166020 TAATCGTCCCTTTTCTCA
1 CAATCGTCCCTTTTCTCA
60166038 CAATCGTCCCTTTTCTCA
1 CAATCGTCCCTTTTCTCA
60166056 C
1 C
60166057 CATCCTCCAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.16, C:0.38, G:0.05, T:0.40
Consensus pattern (18 bp):
CAATCGTCCCTTTTCTCA
Found at i:60168040 original size:12 final size:13
Alignment explanation
Indices: 60168024--60168061 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
60168014 AAGTAATGTA
60168024 AGGTATAATATAT
1 AGGTATAATATAT
*
60168037 -GGTAAAATATAT
1 AGGTATAATATAT
60168049 AGTGTATAATATA
1 AG-GTATAATATA
60168062 ATTTGTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 11 0.52
13 1 0.05
14 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (13 bp):
AGGTATAATATAT
Found at i:60168134 original size:14 final size:13
Alignment explanation
Indices: 60168113--60168150 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
60168103 GTAATAAAAA
60168113 AATATATAATAAG
1 AATATATAATAAG
*
60168126 AAGTATATAAT-AT
1 AA-TATATAATAAG
60168139 AATATATAATAA
1 AATATATAATAA
60168151 AGAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 8 0.36
13 6 0.27
14 8 0.36
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (13 bp):
AATATATAATAAG
Found at i:60168189 original size:12 final size:12
Alignment explanation
Indices: 60168106--60168219 Score: 67
Period size: 14 Copynumber: 9.1 Consensus size: 12
60168096 ATGATAAGTA
*
60168106 ATAAAAAAATAT
1 ATAATAAAATAT
60168118 ATAATAAGAAGTAT
1 ATAATAA-AA-TAT
*
60168132 ATAATATAATAT
1 ATAATAAAATAT
*
60168144 ATAAT-AAAGA-
1 ATAATAAAATAT
60168154 A-AA-AAAATACT
1 ATAATAAAATA-T
*
60168165 ATAAGGAATAATAT
1 ATAA-TAA-AATAT
60168179 ATAATAAAATATGAT
1 ATAAT-AAA-AT-AT
60168194 ATGTAATAAAATAT
1 A--TAATAAAATAT
60168208 A-AATAAAATAT
1 ATAATAAAATAT
60168219 A
1 A
60168220 ATGAAATAAA
Statistics
Matches: 82, Mismatches: 6, Indels: 29
0.70 0.05 0.25
Matches are distributed among these distances:
9 6 0.07
10 1 0.01
11 15 0.18
12 16 0.20
13 5 0.06
14 23 0.28
15 9 0.11
16 3 0.04
17 4 0.05
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.29
Consensus pattern (12 bp):
ATAATAAAATAT
Found at i:60168195 original size:17 final size:17
Alignment explanation
Indices: 60168175--60168207 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
60168165 ATAAGGAATA
60168175 ATATATAATAAAATATG
1 ATATATAATAAAATATG
*
60168192 ATATGTAATAAAATAT
1 ATATATAATAAAATAT
60168208 AAATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:60168356 original size:11 final size:12
Alignment explanation
Indices: 60168332--60168370 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
60168322 TTTACAGAAA
*
60168332 ATAAAAAAATAAT
1 ATAATAAAAT-AT
60168345 ATATATAAAATAT
1 ATA-ATAAAATAT
60168358 ATAATAAAATAT
1 ATAATAAAATAT
60168370 A
1 A
60168371 ATTTATAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 10 0.42
13 8 0.33
14 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
ATAATAAAATAT
Found at i:60168361 original size:26 final size:30
Alignment explanation
Indices: 60168332--60168394 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
60168322 TTTACAGAAA
60168332 ATAA-AAAA-ATAATATAT-A-TAAAATAT
1 ATAATAAAATATAATATATAAGTAAAATAT
*
60168358 ATAATAAAATATAATTTATAAGTAAAATAT
1 ATAATAAAATATAATATATAAGTAAAATAT
60168388 ATAATAA
1 ATAATAA
60168395 TAAAAATAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 4 0.12
27 4 0.12
28 8 0.25
29 1 0.03
30 15 0.47
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (30 bp):
ATAATAAAATATAATATATAAGTAAAATAT
Found at i:60168371 original size:19 final size:19
Alignment explanation
Indices: 60168347--60168397 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 19
60168337 AAAATAATAT
60168347 ATATAAAATATATAA-TAAA
1 ATAT-AAATATATAAGTAAA
*
60168366 ATAT-AATTTATAAGTAAA
1 ATATAAATATATAAGTAAA
60168384 ATATATAATA-ATAA
1 ATATA-AATATATAA
60168398 AAATAATGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 8 0.30
18 8 0.30
19 8 0.30
20 3 0.11
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
ATATAAATATATAAGTAAA
Found at i:60168377 original size:28 final size:29
Alignment explanation
Indices: 60168332--60168402 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
60168322 TTTACAGAAA
60168332 ATAA-AAAAATAATATAT-A-TAAAATAT
1 ATAATAAAAATAATATATAAGTAAAATAT
*
60168358 ATAATAAAATATAATTTATAAGTAAAATAT
1 ATAATAAAA-ATAATATATAAGTAAAATAT
60168388 ATAATAATAAA-AATA
1 ATAATAA-AAATAATA
60168403 ATGTAATGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
26 4 0.11
27 4 0.11
28 8 0.21
29 4 0.11
30 16 0.42
31 2 0.05
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (29 bp):
ATAATAAAAATAATATATAAGTAAAATAT
Found at i:60168397 original size:26 final size:25
Alignment explanation
Indices: 60168307--60168397 Score: 57
Period size: 22 Copynumber: 3.6 Consensus size: 25
60168297 ACAATTAATG
*
60168307 AATAATAATACATAATTTACAG-AA
1 AATAATAATACATAATTTATAGTAA
* *
60168331 AATAA-AA-AAATAATATATA-TAA
1 AATAATAATACATAATTTATAGTAA
*
60168353 AATATATAATAAAATATAATTTATAAGTAA
1 AATA-ATAAT---ACATAATTTAT-AGTAA
60168383 AATATATAATA-ATAA
1 AATA-ATAATACATAA
60168398 AAATAATGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
22 15 0.28
23 3 0.06
24 7 0.13
26 4 0.08
27 1 0.02
28 9 0.17
29 1 0.02
30 13 0.25
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (25 bp):
AATAATAATACATAATTTATAGTAA
Found at i:60169424 original size:20 final size:21
Alignment explanation
Indices: 60169384--60169426 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
60169374 GTAAGCGAGA
60169384 ATCGGGCGATGATCAATGATG
1 ATCGGGCGATGATCAATGATG
* *
60169405 ATCGGGCGCTGAT-GATGATG
1 ATCGGGCGATGATCAATGATG
60169425 AT
1 AT
60169427 GTTGGCGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.26, C:0.14, G:0.35, T:0.26
Consensus pattern (21 bp):
ATCGGGCGATGATCAATGATG
Found at i:60170068 original size:44 final size:44
Alignment explanation
Indices: 60170019--60170296 Score: 214
Period size: 44 Copynumber: 6.4 Consensus size: 44
60170009 CTCCTTGTCG
* *
60170019 AATACAAAGATGTCAAATCTACTATC-TCTGATTTGCTCTCTGAC
1 AATACAAAGATGCCAAATCTACTATCTTC-GATCTGCTCTCTGAC
* * *
60170063 CATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
1 AATACAAAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
** * * * * * *
60170107 AATACAGGGATGCCAAATTTGCT-TCTTGGATTTGC-CCCTCGTC
1 AATACAAAGATGCCAAATCTACTATCTTCGATCTGCTCTCT-GAC
** * * * *
60170150 AAATATGAAGATGCCAAA--T-C-ATCTTGGATCTGCTCCCCGTC
1 -AATACAAAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
** *
60170191 GAATACGGAGATGCCAAATAT-C-ATCTTCGATCTGCTCTCTGAC
1 -AATACAAAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * * *
60170234 AATATACAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
1 AATACAAAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
*
60170278 AATACAGAGATGCCAAATC
1 AATACAAAGATGCCAAATC
60170297 ATCTTGGATC
Statistics
Matches: 192, Mismatches: 33, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
41 30 0.16
42 22 0.11
43 32 0.17
44 106 0.55
45 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (44 bp):
AATACAAAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
Found at i:60170251 original size:127 final size:129
Alignment explanation
Indices: 60170064--60170310 Score: 324
Period size: 127 Copynumber: 1.9 Consensus size: 129
60170054 CTCTCTGACC
* ** * *
60170064 ATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGGGATGCCAAATTTGC
1 ATACAGAGATGCCAAATATGCTATCTTCGATCTGCTCTCTGACAATACACAGACGCCAAATCTGC
* * *
60170129 T-TCTTGGATTTGCCCCTCGTCA-AATA-TGAAGATGCCAAATCATCTTGGATCTGCTCCCCGTC
66 TATCTTCGATCTG-CCCTC-TCACAATACAG-AGATGCCAAATCATCTTGGATCTGCTCCCCGTC
60170191 GA
128 GA
* *
60170193 ATACGGAGATGCCAAATAT-C-ATCTTCGATCTGCTCTCTGACAATATACAGACGCCAAATCTGC
1 ATACAGAGATGCCAAATATGCTATCTTCGATCTGCTCTCTGACAATACACAGACGCCAAATCTGC
* *
60170256 TATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCT
66 TATCTTCGATCTGCCCTCTCACAATACAGAGATGCCAAATCATCTTGGATCTGCT
60170311 TCAGCGTAAA
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
126 2 0.02
127 73 0.71
128 11 0.11
129 17 0.17
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (129 bp):
ATACAGAGATGCCAAATATGCTATCTTCGATCTGCTCTCTGACAATACACAGACGCCAAATCTGC
TATCTTCGATCTGCCCTCTCACAATACAGAGATGCCAAATCATCTTGGATCTGCTCCCCGTCGA
Found at i:60173103 original size:47 final size:48
Alignment explanation
Indices: 60172983--60173166 Score: 334
Period size: 48 Copynumber: 3.9 Consensus size: 48
60172973 TATATATGTG
*
60172983 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
60173031 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
60173079 TG-GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
60173126 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
60173167 GTGTGTATAT
Statistics
Matches: 131, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 46 0.35
48 85 0.65
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:60173129 original size:95 final size:95
Alignment explanation
Indices: 60172986--60173166 Score: 335
Period size: 95 Copynumber: 1.9 Consensus size: 95
60172976 ATATGTGTGT
*
60172986 GGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
*
60173051 AGTGTGAAATATATATGAGATATGTATATG
66 AGTGTGAAATATATAGGAGATATGTATATG
60173081 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
1 GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
*
60173146 AGTGTGAAATATGTAGGAGAT
66 AGTGTGAAATATATAGGAGAT
60173167 GTGTGTATAT
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 83 1.00
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.30
Consensus pattern (95 bp):
GGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
AGTGTGAAATATATAGGAGATATGTATATG
Found at i:60173199 original size:95 final size:94
Alignment explanation
Indices: 60173005--60173201 Score: 272
Period size: 95 Copynumber: 2.1 Consensus size: 94
60172995 GAATGGCTAG
*
60173005 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATAGGAG
* * *
60173070 ATATGTATATGGGTAAAGCCGAATGGCTAG
66 ATATGTATATGGGT-AAGCCGAATGCCAAA
*
60173100 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATAGGAG
* * *
60173165 ATGTGTGTATAT-TGT-GGCCGAATGACCAAA
66 A--TATGTATATGGGTAAGCCGAATG-CCAAA
60173195 TGTGAAA
1 TGTGAAA
60173202 GGTGTGTATT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
94 8 0.09
95 73 0.80
96 2 0.02
97 8 0.09
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (94 bp):
TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATAGGAG
ATATGTATATGGGTAAGCCGAATGCCAAA
Found at i:60174670 original size:40 final size:40
Alignment explanation
Indices: 60174617--60174892 Score: 448
Period size: 40 Copynumber: 6.9 Consensus size: 40
60174607 TTGAGAGTTA
*
60174617 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
60174657 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
60174697 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
60174737 TATATCCGGGCTACGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
60174777 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
60174817 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
60174857 TATATCCGGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 TATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
60174893 AATTATGAGG
Statistics
Matches: 222, Mismatches: 13, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 14 0.06
40 208 0.94
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:60174934 original size:28 final size:28
Alignment explanation
Indices: 60174902--60175056 Score: 125
Period size: 28 Copynumber: 5.5 Consensus size: 28
60174892 GAATTATGAG
* *
60174902 GCACTGTGTGTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCAAGTTCTTCAATCGA
* * * * *
60174930 GCACTATGTGTGCCAGATCAGT-AGTTGA
1 GCACTATGTGTGCAAGTTC-TTCAATCGA
*
60174958 GGCACTGTGTGTGCAAGTTCTTCAATCGA
1 -GCACTATGTGTGCAAGTTCTTCAATCGA
* ** *
60174987 GCACTATGTGTGCGAGATTGGT-AATTGA
1 GCACTATGTGTGCAAG-TTCTTCAATCGA
* *
60175015 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCAAGTTCTTCAATCGA
*
60175044 GCGCTATGTGTGC
1 GCACTATGTGTGC
60175057 GAAATCAGTC
Statistics
Matches: 99, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
28 54 0.55
29 45 0.45
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCAAGTTCTTCAATCGA
Found at i:60174988 original size:57 final size:57
Alignment explanation
Indices: 60174898--60175077 Score: 247
Period size: 57 Copynumber: 3.2 Consensus size: 57
60174888 GCTGGAATTA
* *
60174898 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
** *
60174955 TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * * * *
60175012 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
60175069 TG-GGCACTG
1 TGAGGCACTG
60175078 CGTATACGAA
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
56 6 0.06
57 101 0.94
58 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.29
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:60175022 original size:29 final size:29
Alignment explanation
Indices: 60174930--60175031 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
60174920 CTTCAACCGA
* * *
60174930 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* * ** *
60174959 GCACTGTGTGTGCAAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
*
60174987 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
60175016 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
60175032 TTCTTTAATC
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
28 21 0.36
29 37 0.64
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:60178627 original size:48 final size:48
Alignment explanation
Indices: 60178556--60178749 Score: 352
Period size: 48 Copynumber: 4.0 Consensus size: 48
60178546 CAAGATAAAT
* *
60178556 ATATGTGTGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
60178604 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
60178652 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
60178700 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
60178748 AT
1 AT
60178750 GTGTGTATAT
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 141 1.00
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:60185662 original size:93 final size:93
Alignment explanation
Indices: 60185529--60185699 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
60185519 GCCCATAAGT
* *
60185529 GAACTCGGACTCAACTCAAAGAGCTCAGGCGTTCCCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACACAAAGAGCTCAGGCATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
60185594 CGAGATCGGATGCCTAGTTACATCTCTC
66 CGAGATCGGATGCCTAGTTACATCTCTC
* * *
60185622 GAACTCGGACTCAACACAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACACAAAGAGCTCAGG-CATTCCCATCCATAAGTGAACTCGGACTCAACTCA
*
60185686 ACGAGTTCGGATGC
65 ACGAGATCGGATGC
60185700 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACACAAAGAGCTCAGGCATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGATCGGATGCCTAGTTACATCTCTC
Found at i:60185696 original size:46 final size:44
Alignment explanation
Indices: 60185521--60185695 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 44
60185511 TGTAACCCGC
* * *
60185521 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCAGGCGTTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATT-CCAT
* *
60185567 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCC-A--T
* *** *
60185613 ACATCTCTCGAACTCGGACTCAACACAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGG-CATTC-CAT
60185660 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
60185696 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 2 0.02
46 64 0.60
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCCAT
Found at i:60185715 original size:46 final size:46
Alignment explanation
Indices: 60185526--60185715 Score: 128
Period size: 46 Copynumber: 4.1 Consensus size: 46
60185516 CCCGCCCATA
* * * *
60185526 AGTGAACTCGGACTCAACTCAAAGAGCTCAGG-CGTTC--CCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCTCAACCATCC-T
*
60185571 AAGTGAACTCGGACTCAACTCAACGAGATCGGATGC-CTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC-CT
* * * * * *
60185621 --CGAACTCGGACTCAACACAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
60185665 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
60185711 AGTGA
1 AGTGA
60185716 CATGTCACTT
Statistics
Matches: 112, Mismatches: 16, Indels: 32
0.70 0.10 0.20
Matches are distributed among these distances:
44 9 0.08
45 3 0.03
46 60 0.54
47 29 0.26
49 4 0.04
50 6 0.05
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:60188787 original size:29 final size:29
Alignment explanation
Indices: 60188753--60188884 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
60188743 TACTCGATTT
* * *
60188753 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
60188782 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
60188811 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
60188840 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
60188869 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60188885 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:60188845 original size:58 final size:59
Alignment explanation
Indices: 60188752--60188884 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
60188742 ATACTCGATT
* * * *
60188752 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
* * * * * *
60188810 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGCA
60188869 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
60188885 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
Found at i:60196453 original size:2 final size:2
Alignment explanation
Indices: 60196446--60196474 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
60196436 TCGATCGGAG
60196446 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
60196475 GAGTACGCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60196542 original size:29 final size:29
Alignment explanation
Indices: 60196508--60196639 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
60196498 TACTCGATTT
* * *
60196508 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
60196537 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
60196566 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
60196595 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
60196624 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60196640 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:60196600 original size:58 final size:59
Alignment explanation
Indices: 60196507--60196639 Score: 146
Period size: 58 Copynumber: 2.3 Consensus size: 59
60196497 ATACTCGATT
* * * *
60196507 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
* * * * * *
60196565 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGCA
60196624 T-GCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
60196640 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 4 0.06
58 58 0.92
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGCA
Found at i:60199237 original size:15 final size:15
Alignment explanation
Indices: 60199211--60199266 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
60199201 CAAGGAAACC
60199211 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
60199226 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
60199241 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
60199256 GAATAAAGAAA
1 GAATAAAGAAA
60199267 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:60202281 original size:46 final size:46
Alignment explanation
Indices: 60202219--60202388 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
60202209 TGTAACCCGC
* * *
60202219 CCATAAGTGAACTCGGACTCAGCTCAACGAGCTCAGGCGTTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGATCAGGCATTCCCAT
* *
60202265 CCATAAGTGAACTCGGACTCAACTCAACGAGATC-GG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGATCAGGCATTCCCA--T
* *** * * *
60202311 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGATCAGGCATTCCCAT
60202358 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
60202389 TTCGGATGCT
Statistics
Matches: 101, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
44 4 0.04
45 2 0.02
46 60 0.59
47 30 0.30
48 1 0.01
49 4 0.04
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGATCAGGCATTCCCAT
Found at i:60202341 original size:93 final size:93
Alignment explanation
Indices: 60202227--60202397 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
60202217 GCCCATAAGT
* * *
60202227 GAACTCGGACTCAGCTCAACGAGCTCAGGCGTTCCCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
60202292 CGAGATCGGATGCCTAGTTACATCTCTC
66 CGAGATCGGATGCCTAGTTACATCTCTC
* *
60202320 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
*
60202385 CGAGTTCGGATGC
66 CGAGATCGGATGC
60202398 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGATCGGATGCCTAGTTACATCTCTC
Found at i:60208326 original size:24 final size:24
Alignment explanation
Indices: 60208299--60208422 Score: 214
Period size: 24 Copynumber: 5.2 Consensus size: 24
60208289 AAGGCTGTCA
*
60208299 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
60208323 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
60208347 GGAGAGGATTTAGGAGCTGATAA-
1 GGAGAGGATTTAGGAGCTGATAAG
*
60208370 GGAGAGGATGTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
60208394 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
60208418 GGAGA
1 GGAGA
60208423 ACAGTGTTGG
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
23 22 0.23
24 73 0.77
ACGTcount: A:0.34, C:0.04, G:0.42, T:0.20
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:60208392 original size:47 final size:48
Alignment explanation
Indices: 60208299--60208422 Score: 214
Period size: 47 Copynumber: 2.6 Consensus size: 48
60208289 AAGGCTGTCA
* *
60208299 GGAGAAGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAGGGAGAGGATGTAGGAGCTGATAAG
60208347 GGAGAGGATTTAGGAGCTGATAA-GGAGAGGATGTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAGGGAGAGGATGTAGGAGCTGATAAG
*
60208394 GGAGAGGATTTAGGAGCTGATTAGGGAGA
1 GGAGAGGATTTAGGAGCTGATAAGGGAGA
60208423 ACAGTGTTGG
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
47 45 0.62
48 27 0.38
ACGTcount: A:0.34, C:0.04, G:0.42, T:0.20
Consensus pattern (48 bp):
GGAGAGGATTTAGGAGCTGATAAGGGAGAGGATGTAGGAGCTGATAAG
Found at i:60209911 original size:27 final size:27
Alignment explanation
Indices: 60209881--60209963 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
60209871 AATTATCTAA
60209881 TCTGGTGGCACTGCCACATATATCTGT
1 TCTGGTGGCACTGCCACATATATCTGT
* ** *
60209908 TCTGATGGTTCTGCCACA-ATTATTTGT
1 TCTGGTGGCACTGCCACATA-TATCTGT
* *
60209935 TCTGGTGACACTGTCACAT-TATCTGT
1 TCTGGTGGCACTGCCACATATATCTGT
60209961 TCT
1 TCT
60209964 AGTAGCCATG
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
26 10 0.23
27 34 0.77
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (27 bp):
TCTGGTGGCACTGCCACATATATCTGT
Found at i:60213414 original size:17 final size:18
Alignment explanation
Indices: 60213380--60213417 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
60213370 TTTATCCTTT
*
60213380 TTAAAAAAATCTTTTTAAA
1 TTAAAAAAATC-TATTAAA
60213399 TTAAAAAAATC-ATTAAA
1 TTAAAAAAATCTATTAAA
60213416 TT
1 TT
60213418 GATGATGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
19 11 0.61
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (18 bp):
TTAAAAAAATCTATTAAA
Found at i:60214200 original size:26 final size:25
Alignment explanation
Indices: 60214152--60214221 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 25
60214142 AGCATATGAT
60214152 AAGTAATAAAAAAATATATAATAAG
1 AAGTAATAAAAAAATATATAATAAG
*
60214177 AAGT-ATAAAATATAATATATAATAAA
1 AAGTAATAAAA-A-AATATATAATAAG
60214203 AAG--A-AAAAAAATACTATAA
1 AAGTAATAAAAAAATA-TATAA
60214222 GGAATAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
22 4 0.10
23 6 0.15
24 10 0.24
25 6 0.15
26 15 0.37
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.24
Consensus pattern (25 bp):
AAGTAATAAAAAAATATATAATAAG
Found at i:60214243 original size:49 final size:48
Alignment explanation
Indices: 60214159--60214268 Score: 125
Period size: 49 Copynumber: 2.3 Consensus size: 48
60214149 GATAAGTAAT
* *
60214159 AAAAAAATA-TATAATAAGAAGTATAAAATATAATATATAATAAAAAGA
1 AAAAAAATACTATAAGAAGAAGTATAAAATAAAATATA-AATAAAAAGA
* * * *
60214207 AAAAAAATACTATAAGGAATAA-TATATAATAAAATATAAATAATATGA
1 AAAAAAATACTATAA-GAAGAAGTATAAAATAAAATATAAATAAAAAGA
60214255 AATAAAAATACTAT
1 AA-AAAAATACTAT
60214269 CATATAAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
48 19 0.36
49 30 0.57
50 4 0.08
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.26
Consensus pattern (48 bp):
AAAAAAATACTATAAGAAGAAGTATAAAATAAAATATAAATAAAAAGA
Found at i:60214392 original size:26 final size:29
Alignment explanation
Indices: 60214363--60214425 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
60214353 TTTACAGAAA
*
60214363 ATAA-AAAA-ATAA-AATATGTAAAATAT
1 ATAATAAAATATAATAATAAGTAAAATAT
*
60214389 ATAATAAAATATAATTTATAAGTAAAATAT
1 ATAATAAAATATAA-TAATAAGTAAAATAT
60214419 ATAATAA
1 ATAATAA
60214426 TAAAAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 4 0.13
27 4 0.13
28 4 0.13
30 19 0.61
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (29 bp):
ATAATAAAATATAATAATAAGTAAAATAT
Found at i:60214435 original size:32 final size:30
Alignment explanation
Indices: 60214380--60214438 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
60214370 AATAAAATAT
*
60214380 GTAAAATATATAATAAAATATAATTTATAA
1 GTAAAATATATAATAAAAAATAATTTATAA
60214410 GTAAAATATATAATAATAAAAATAATTTA
1 GTAAAATATATAAT-A-AAAAATAATTTA
60214439 ATGGATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 14 0.54
31 1 0.04
32 11 0.42
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (30 bp):
GTAAAATATATAATAAAAAATAATTTATAA
Found at i:60219317 original size:8 final size:8
Alignment explanation
Indices: 60219301--60219335 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
60219291 GTAGATTGGC
*
60219301 AAATCCCG
1 AAATGCCG
60219309 AAATGCCG
1 AAATGCCG
*
60219317 AAAAGCCG
1 AAATGCCG
60219325 AAATGCCG
1 AAATGCCG
60219333 AAA
1 AAA
60219336 AGCCAAAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.46, C:0.26, G:0.20, T:0.09
Consensus pattern (8 bp):
AAATGCCG
Found at i:60219327 original size:16 final size:16
Alignment explanation
Indices: 60219306--60219339 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
60219296 TTGGCAAATC
60219306 CCGAAATGCCGAAAAG
1 CCGAAATGCCGAAAAG
60219322 CCGAAATGCCGAAAAG
1 CCGAAATGCCGAAAAG
60219338 CC
1 CC
60219340 AAAAGTTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.29, G:0.24, T:0.06
Consensus pattern (16 bp):
CCGAAATGCCGAAAAG
Found at i:60219600 original size:29 final size:29
Alignment explanation
Indices: 60219558--60219625 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
60219548 GCATGTATAT
60219558 GAATGTGATTTGGGCCTAATGGGCCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
*
60219587 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAC
*
60219616 GAATGAGATT
1 GAATGTGATT
60219626 GGGTTTAGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.29
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:60232311 original size:50 final size:47
Alignment explanation
Indices: 60232189--60232365 Score: 144
Period size: 50 Copynumber: 3.6 Consensus size: 47
60232179 CCATCAAGTA
*
60232189 GATGCCATGTCCCAGACATGGTTTTACACTTACTATCAAAATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACAC-TACTATCAAAATCGA-GCT
* * *
60232238 GACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTA-CT
1 GATGCCATGTCCCAGACATGGTCTTACACTA-CTATCA-AAATC-G-AGCT
* * * * * *
60232288 GATGCCATGTCCCAGACACGGTCTTCCACTGAC-ACCTCTATAT-GTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-ACTA--TCAAAATCGAGCT
* *
60232336 GATGCCATGTCCTAGATATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
60232366 GACACATCTC
Statistics
Matches: 105, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
48 30 0.29
49 32 0.30
50 38 0.36
51 4 0.04
52 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTACTATCAAAATCGAGCT
Found at i:60241082 original size:15 final size:15
Alignment explanation
Indices: 60241058--60241089 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
60241048 CAAGATCATT
60241058 TACTTATAGAGAGAC
1 TACTTATAGAGAGAC
*
60241073 TACTTGTAGAGAGAC
1 TACTTATAGAGAGAC
60241088 TA
1 TA
60241090 AGTGGCTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (15 bp):
TACTTATAGAGAGAC
Found at i:60247269 original size:27 final size:28
Alignment explanation
Indices: 60247225--60247322 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
60247215 ATAGTGAGTC
60247225 CGCACAC-TAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
60247251 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
60247279 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
60247309 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60247323 CATTCTCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 7 0.11
27 14 0.23
28 22 0.35
30 19 0.31
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60255215 original size:28 final size:27
Alignment explanation
Indices: 60255152--60255221 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
60255142 ATAGTGAGTC
*
60255152 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
60255179 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
60255207 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60255222 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:60260393 original size:27 final size:26
Alignment explanation
Indices: 60260337--60260393 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
60260327 CAACCTTAAC
* *
60260337 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
60260363 CCTAGGGGTAAATCTGTAAATTTTGCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
60260390 CCTA
1 CCTA
60260394 TAAAGGTGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:60262629 original size:17 final size:17
Alignment explanation
Indices: 60262615--60262653 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
60262605 AAAAATAACG
60262615 AAAATAAATAAATAAGA
1 AAAATAAATAAATAAGA
* * *
60262632 AAAATAAACAAACAATA
1 AAAATAAATAAATAAGA
60262649 AAAAT
1 AAAAT
60262654 CATTAAACCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAATAAATAAATAAGA
Found at i:60264047 original size:24 final size:25
Alignment explanation
Indices: 60264020--60264075 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 25
60264010 GCTTTAATAG
*
60264020 AGTTGCACCAAAGTGCC-ATCACAA
1 AGTTGCACCAAAATGCCTATCACAA
*
60264044 AGTTGCACCAAAATGCCTTTCACAA
1 AGTTGCACCAAAATGCCTATCACAA
*
60264069 AATTGCA
1 AGTTGCA
60264076 TCGAAGTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 16 0.57
25 12 0.43
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (25 bp):
AGTTGCACCAAAATGCCTATCACAA
Found at i:60279385 original size:29 final size:29
Alignment explanation
Indices: 60279351--60279453 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
60279341 TAATCAGCCG
** *
60279351 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
60279380 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
60279409 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
60279438 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
60279454 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:60282687 original size:41 final size:41
Alignment explanation
Indices: 60282642--60282759 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
60282632 TGAAAGATAA
60282642 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
60282683 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60282713 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60282754 ATGTAG
1 ATGTAG
60282760 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:60282698 original size:71 final size:71
Alignment explanation
Indices: 60282610--60282773 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60282600 GAGATGTATC
60282610 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60282675 AGGACA
66 AGGACA
60282681 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60282746 AGGACA
66 AGGACA
60282752 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60282774 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60290266 original size:41 final size:41
Alignment explanation
Indices: 60290221--60290338 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
60290211 TGAAAGATAA
60290221 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
60290262 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60290292 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60290333 ATGTAG
1 ATGTAG
60290339 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:60290277 original size:71 final size:71
Alignment explanation
Indices: 60290189--60290352 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60290179 GAGATGTATC
60290189 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60290254 AGGACA
66 AGGACA
60290260 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60290325 AGGACA
66 AGGACA
60290331 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60290353 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60297810 original size:29 final size:29
Alignment explanation
Indices: 60297776--60297878 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
60297766 TAATCAGCCG
** *
60297776 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
60297805 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
60297834 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
60297863 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
60297879 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:60302058 original size:46 final size:47
Alignment explanation
Indices: 60301966--60302169 Score: 184
Period size: 46 Copynumber: 4.3 Consensus size: 47
60301956 TACGCCAGTC
* * *
60301966 TAAGACCATGTCTGGGACATGGCATCAG--TGTTAAGACGAGAGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCAGCACGAT-ATACGAGAGCTAGTG
* * *
60302014 TAAGACATGTCCGGGACATGCATCAGCCAC-AT-TATGAGTGCTAGTG
1 TAAGACATGTCTGGGACATGCATCAG-CACGATATACGAGAGCTAGTG
*
60302060 TAAGACATGTCTGGGACATACATCAGCACGTATATACGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCAGCACG-ATATACGAGAGCTAGTG
* * * * *
60302108 TAAGACCATGTCTGGGACATGGCATCGGCATCGA-AGATGATAGCCAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCAGCA-CGATATACGAGAGCTAGTG
60302157 TAAGACCATGTCT
1 TAAGA-CATGTCT
60302170 AGGATATGGC
Statistics
Matches: 131, Mismatches: 16, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
45 3 0.02
46 42 0.32
47 15 0.11
48 23 0.18
49 38 0.29
50 8 0.06
51 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (47 bp):
TAAGACATGTCTGGGACATGCATCAGCACGATATACGAGAGCTAGTG
Found at i:60302157 original size:49 final size:48
Alignment explanation
Indices: 60301966--60302179 Score: 204
Period size: 49 Copynumber: 4.5 Consensus size: 48
60301956 TACGCCAGTC
****
60301966 TAAGACCATGTCTGGGACATGGCATCAGTGTTAAGACGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCACGAAGACGAGAGCTAGTG
* ** * *
60302014 TAAGA-CATGTCCGGGACAT-GCATCAGCCAC-ATTATGAGTGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAG-CACGAAGACGAGAGCTAGTG
* *
60302060 TAAGA-CATGTCTGGGACAT-ACATCAGCACGTATATACGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCACG-A-AGACGAGAGCTAGTG
* * * *
60302108 TAAGACCATGTCTGGGACATGGCATCGGCATCGAAGATGATAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCA-CGAAGACGAGAGCTAGTG
* *
60302157 TAAGACCATGTCTAGGATATGGC
1 TAAGACCATGTCTGGGACATGGC
60302180 TTCGACAACT
Statistics
Matches: 138, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
45 3 0.02
46 43 0.31
47 14 0.10
48 22 0.16
49 46 0.33
50 8 0.06
51 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCAGCACGAAGACGAGAGCTAGTG
Found at i:60305006 original size:20 final size:20
Alignment explanation
Indices: 60304981--60305021 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
60304971 ATAAATTATG
60304981 TCAAACAATGAATTAATGTT
1 TCAAACAATGAATTAATGTT
60305001 TCAAACAATGAATTAATGTT
1 TCAAACAATGAATTAATGTT
60305021 T
1 T
60305022 GGACTAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.37
Consensus pattern (20 bp):
TCAAACAATGAATTAATGTT
Found at i:60311199 original size:17 final size:16
Alignment explanation
Indices: 60311174--60311206 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
60311164 ACAGTTATCC
60311174 TTTTTTTTTTCTTTCT
1 TTTTTTTTTTCTTTCT
60311190 TTTTTCTTTTTCTTTCT
1 TTTTT-TTTTTCTTTCT
60311207 ATTACTTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTTTTTTTCTTTCT
Found at i:60316977 original size:46 final size:48
Alignment explanation
Indices: 60316838--60317087 Score: 207
Period size: 46 Copynumber: 5.3 Consensus size: 48
60316828 CAATGTAAAA
* * * *
60316838 CATGTCTGGGACATGCATCGACCAC-ACTATG-AGAGCCAGAGTAAGAC
1 CATGTCTGGGACATGCATCGGCCTCGA-GATGTAGAGCCAGTGTAAGAC
* * * ** *
60316885 CATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGCTGGTATAAGA-
1 CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCCAGTGTAAGAC
60316932 CATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCCAGTGTAAGA-
1 CATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCCAGTGTAAGAC
* * * *
60316978 CATGTCTGGGACATGTATC-GACTACGAAATGT---GTCAGTGTAAGAC
1 CATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCCAGTGTAAGAC
* * *
60317023 CATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGAGCCCGTGTAAGAC
1 CATGTCTGGGACAT-GCATCGGC-CTCGAGATGT-AGAGCCAGTGTAAGAC
*
60317073 CATGTTTGGGACATG
1 CATGTCTGGGACATG
60317088 GAATCGGTAT
Statistics
Matches: 164, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
44 11 0.07
45 17 0.10
46 59 0.36
47 30 0.18
48 21 0.13
49 2 0.01
50 24 0.15
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (48 bp):
CATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCCAGTGTAAGAC
Found at i:60327606 original size:46 final size:46
Alignment explanation
Indices: 60327439--60327608 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
60327429 GGTTGAGCAT
* *
60327439 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-T
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
* ** * * * *
60327484 CGAACTCGTTGAGTTGAGTCCGAGTTCGCGAAATGTA-AC-TAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCAC-TTATGGATGCGAACGC--C
60327531 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
** *
60327577 CGCGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60327609 GGGGTGGGTT
Statistics
Matches: 101, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
44 2 0.02
45 29 0.29
46 38 0.38
47 29 0.29
48 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
Found at i:60332055 original size:42 final size:42
Alignment explanation
Indices: 60331902--60332066 Score: 192
Period size: 42 Copynumber: 3.9 Consensus size: 42
60331892 AATCATACCA
* * **
60331902 ATGCCTTATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
60331944 ATGCCAATAGCCTAGCTATGGTCTTACACG-ATTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
60331986 ATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT-ATCG
60332028 ATGCCATATCCCAGATATGGTCTTACACGTAAA-CTCATA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAATCTCATA
60332067 ACCCTAATGT
Statistics
Matches: 104, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
41 20 0.19
42 60 0.58
43 24 0.23
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:60343792 original size:40 final size:40
Alignment explanation
Indices: 60343600--60343785 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
60343590 TCGAATGATG
* * *
60343600 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
60343640 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60343680 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60343720 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60343761 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60343786 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60343792 original size:80 final size:79
Alignment explanation
Indices: 60343600--60343808 Score: 230
Period size: 80 Copynumber: 2.6 Consensus size: 79
60343590 TCGAATGATG
** * * *
60343600 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTAG-CTAAATCCGG-TTAAG-TCCCGAAGGCA
60343662 TTTGTGCGAGTTACTAAA
62 TTTGTGCGAGTTACTAAA
* **
60343680 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCAGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAGTCCCGAAGGCATT
60343744 TGTGCGAGTTACTATAA
64 TGTGCGAGTTACTA-AA
* *
60343761 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAA
60343809 ACTCCGAAAG
Statistics
Matches: 113, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
79 9 0.08
80 92 0.81
81 12 0.11
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:60351834 original size:40 final size:40
Alignment explanation
Indices: 60351737--60351922 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
60351727 TCGAATGATG
* * *
60351737 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAA
* *
60351777 TTCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGTGAGTTACTAAA
* *
60351817 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
* *
60351857 TCCGGGTTAAGTCCCGAAGGCATTTGTATGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTA-AA
*
60351898 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60351923 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
Found at i:60355412 original size:78 final size:82
Alignment explanation
Indices: 60355282--60355465 Score: 229
Period size: 78 Copynumber: 2.3 Consensus size: 82
60355272 ACGACTCGCT
** *
60355282 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTGACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
60355345 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
60355362 CAAATGCCTTCGGG-CTTAGCCCGGATT-TA-TTACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTGACTCGCACGAATGCCTTCGGATCCTAACCCG
*
60355424 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
60355441 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60355466 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 3 0.03
78 44 0.48
79 28 0.31
80 16 0.18
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTGACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:60355465 original size:40 final size:39
Alignment explanation
Indices: 60355275--60355465 Score: 154
Period size: 40 Copynumber: 4.8 Consensus size: 39
60355265 GGATATAACG
* ** * *
60355275 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
60355315 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
60355355 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTA-TT
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
60355393 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
60355433 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
60355466 CATCATTCGA
Statistics
Matches: 120, Mismatches: 23, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
37 2 0.02
38 14 0.12
39 29 0.24
40 65 0.54
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:60363438 original size:39 final size:40
Alignment explanation
Indices: 60363315--60363439 Score: 139
Period size: 40 Copynumber: 3.1 Consensus size: 40
60363305 GACTGGCTCA
* *
60363315 AATGCCTTCGGGAC-GAAGCCCGG-TTATAGTGACTCGCACG
1 AATGCCTTCGGGACTTAA-CCCGGATT-TAGTAACTCGCACG
* * *
60363355 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* * *
60363395 AATGCCTTCGGG-CTTAGCCCGGATTTATTATCTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
60363434 AATGCC
1 AATGCC
60363440 GGATCCTAGT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
39 27 0.37
40 42 0.58
41 4 0.05
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:60371587 original size:80 final size:80
Alignment explanation
Indices: 60371454--60371605 Score: 250
Period size: 80 Copynumber: 1.9 Consensus size: 80
60371444 TTTGGATGAT
* *
60371454 AACCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAATCCGGGCTAAGTCCCGAAGGCATT
1 AACCGGGCTAAGTCCCGAAGGCATCTGCACGAATGACTAAATCCGGGCTAAGTCCCGAAGGCATT
60371519 TGTGTGAGTTACTAA
66 TGTGTGAGTTACTAA
* ** *
60371534 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATT
1 AACCGGGCTAAGTCCCGAAGGCATCTGCACGAATGACTAAATCCGGGCTAAGTCCCGAAGGCATT
60371599 TGTGTGA
66 TGTGTGA
60371606 CAGCCCAAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
AACCGGGCTAAGTCCCGAAGGCATCTGCACGAATGACTAAATCCGGGCTAAGTCCCGAAGGCATT
TGTGTGAGTTACTAA
Found at i:60371601 original size:40 final size:40
Alignment explanation
Indices: 60371456--60371602 Score: 222
Period size: 40 Copynumber: 3.7 Consensus size: 40
60371446 TGGATGATAA
* ** * *
60371456 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
60371496 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
60371536 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
60371576 CCGGGCTAAGTCCCGAAGGCATTTGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTG
60371603 TGACAGCCCA
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:60373399 original size:40 final size:40
Alignment explanation
Indices: 60373272--60373401 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
60373262 ATGCTGGAAA
* *
60373272 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
60373312 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
60373352 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
60373392 TTATATCCGG
1 TTATATCCGG
60373402 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:60381862 original size:28 final size:28
Alignment explanation
Indices: 60381797--60381897 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
60381787 ATAGTGAATC
*
60381797 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
60381826 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
60381854 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
60381884 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60381898 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60389778 original size:28 final size:28
Alignment explanation
Indices: 60389713--60389813 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
60389703 ATAGTGAATC
*
60389713 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
60389742 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
60389770 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
60389800 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60389814 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60392873 original size:40 final size:40
Alignment explanation
Indices: 60392794--60392951 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
60392784 TTCGAATGAT
* * * *
60392794 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
60392834 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
60392874 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
60392914 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
60392952 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Done.