Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 193 of 433
Found at i:60791523 original size:24 final size:24
Alignment explanation
Indices: 60791450--60791526 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 24
60791440 TCTAATTGTC
60791450 TCACATAAGTGCCTACTAATAAATT
1 TCACATAAGT-CCTACTAATAAATT
*
60791475 TCA-AT-A--CC-ACT-CTAAATTGT
1 TCACATAAGTCCTACTAATAAA-T-T
60791495 CTCACATAAGTCCTACTAATAAATT
1 -TCACATAAGTCCTACTAATAAATT
60791520 TCACATA
1 TCACATA
60791527 CACTGACCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 19
0.66 0.03 0.31
Matches are distributed among these distances:
18 4 0.10
19 4 0.10
20 3 0.07
21 3 0.07
22 2 0.05
23 2 0.05
24 9 0.22
25 6 0.15
26 4 0.10
27 4 0.10
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.32
Consensus pattern (24 bp):
TCACATAAGTCCTACTAATAAATT
Found at i:60792324 original size:48 final size:48
Alignment explanation
Indices: 60792268--60792536 Score: 285
Period size: 48 Copynumber: 5.6 Consensus size: 48
60792258 GAATTTGTCA
* * * *
60792268 ATGCCATGTCTCAGACATGGTCTTACATTGACTCACATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAGGCCG
* * *
60792316 ATGCCATGTCCCAGACATGGTCTTACAC-CAGCTTTCATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATCGAGGCCG
* * ** *
60792364 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAGGCCG
* ** **
60792412 ATGCCATGTCCCAGACATGGTCTTACACTAGGA--CACATATTAATACCG
1 ATGCCATGTCCCAGACATGGTCTTACACT--GACTCTCATATCGAGGCCG
* * *
60792460 ATGCCATTTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCAT-ATCGAGGCCG
*
60792508 ATGTCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
60792537 AGCACACATA
Statistics
Matches: 183, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 178 0.97
49 2 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAGGCCG
Found at i:60792432 original size:96 final size:96
Alignment explanation
Indices: 60792268--60792549 Score: 350
Period size: 96 Copynumber: 2.9 Consensus size: 96
60792258 GAATTTGTCA
* * * ** *
60792268 ATGCCATGT-CTCAGACATGGTCTTACATTGACTCACATGTCGAGGCCGATGCCATGTCCCAGAC
1 ATGCCATGTCCT-AGACATGGTCTTACACTGGCTCTCATAACGTGGCCGATGCCATGTCCCAGAC
*** * * *
60792332 ATGGTCTTACACCAGCTTTCATGTCGAGGCCG
65 ATGGTCTTACACCAGCACACATATCAAGACCG
*
60792364 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAGGTGGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAACGTGGCCGATGCCATGTCCCAGACA
* * * *
60792429 TGGTCTTACACTAGGACACATATTAATACCG
66 TGGTCTTACACCAGCACACATATCAAGACCG
* * * *
60792460 ATGCCATTTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGTCATGTCCCAGACA
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAACGTGGCCGATGCCATGTCCCAGACA
*
60792525 TGGTCTTACACTAGCACACATATCA
66 TGGTCTTACACCAGCACACATATCA
60792550 CCCAAATGTC
Statistics
Matches: 162, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
96 160 0.99
97 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAACGTGGCCGATGCCATGTCCCAGACA
TGGTCTTACACCAGCACACATATCAAGACCG
Found at i:60800047 original size:48 final size:48
Alignment explanation
Indices: 60799984--60800207 Score: 228
Period size: 48 Copynumber: 4.7 Consensus size: 48
60799974 TGAATTTGTC
* *
60799984 GATGCCCTGT-CCAGACATGGTCTTACACTAGCTCACATGTCAAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCAAGGCT
* * * * *
60800031 GATGCCGTGCCCCAGACATGGTCTTACACTAGCTCTTATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCAAGGCT
* * *
60800079 GATGCCATGTCCTAGACACGGTCTTACACTAGCTCTCA--T-AAGGTGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCAA-G-GCT
* *
60800126 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--T-AAGGTGGT
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCAA-G-GCT
*
60800174 CGATGCCATGTCCTAGACATGGTCTTACACTAGC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGC
60800208 ATACATATCA
Statistics
Matches: 153, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
45 1 0.01
46 2 0.01
47 9 0.06
48 141 0.92
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATGTCAAGGCT
Found at i:60800146 original size:96 final size:95
Alignment explanation
Indices: 60799983--60800207 Score: 276
Period size: 96 Copynumber: 2.4 Consensus size: 95
60799973 GTGAATTTGT
* *
60799983 CGATGCCCTGTCC-AGACATGGTCTTACACTAGCTCACATGTCAAGGCTGATGCCGTGCCCCAGA
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACA-GTCAAGGCTGATGCCATGCCCCAGA
* **
60800047 CATGGTCTTACACTAGCTCTTATGTCGAGGC
65 CATGGTCTTACACTAGCTCTCATAACGAGGC
* * * *
60800078 CGATGCCATGTCCTAGACACGGTCTTACACTAGCTCTCA-T-AAGGTGTTCGATGCCATGTCCCA
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACAGTCAA-G-GCT-GATGCCATGCCCCA
* * * *
60800141 GACATGGTCTTACACTGGCTCTCATAAGGTGGT
63 GACATGGTCTTACACTAGCTCTCATAACGAGGC
60800174 CGATGCCATGTCCTAGACATGGTCTTACACTAGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGC
60800208 ATACATATCA
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
93 2 0.02
94 2 0.02
95 14 0.12
96 94 0.84
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (95 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACAGTCAAGGCTGATGCCATGCCCCAGAC
ATGGTCTTACACTAGCTCTCATAACGAGGC
Found at i:60809746 original size:38 final size:38
Alignment explanation
Indices: 60809697--60809775 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
60809687 TATTTGATAG
60809697 TGAATGACTTTTCATGAAGGAAGATGTAATGGTTACAA
1 TGAATGACTTTTCATGAAGGAAGATGTAATGGTTACAA
*
60809735 TGAATGACTTTTCATGAAGGAATATGTAATGGTTACAA
1 TGAATGACTTTTCATGAAGGAAGATGTAATGGTTACAA
60809773 TGA
1 TGA
60809776 GAGGATCATA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (38 bp):
TGAATGACTTTTCATGAAGGAAGATGTAATGGTTACAA
Found at i:60815220 original size:52 final size:52
Alignment explanation
Indices: 60815136--60815245 Score: 134
Period size: 52 Copynumber: 2.1 Consensus size: 52
60815126 GGGGTTTGCT
* ** *
60815136 AAGAGAGTTTCAGTAAGGAGTTCTACTGAGATTC-AGCAAAGTAGTGTACACA
1 AAGAGAGTTTCAGCAAGGAGTTCTACCAAGATTCGA-AAAAGTAGTGTACACA
* *
60815188 AAGAGAGTTTCAGCAAGGAGTTC-ACCCAAGATTCGAAAAAGTAGTGTACGCC
1 AAGAGAGTTTCAGCAAGGAGTTCTA-CCAAGATTCGAAAAAGTAGTGTACACA
60815240 AAGAGA
1 AAGAGA
60815246 ACATCAATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
51 1 0.02
52 48 0.96
53 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.21
Consensus pattern (52 bp):
AAGAGAGTTTCAGCAAGGAGTTCTACCAAGATTCGAAAAAGTAGTGTACACA
Found at i:60816951 original size:29 final size:29
Alignment explanation
Indices: 60816890--60816980 Score: 139
Period size: 29 Copynumber: 3.2 Consensus size: 29
60816880 TACATACATG
*
60816890 CATATGGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
* *
60816918 TATATTGCCCATTAGGCCCAAATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
*
60816947 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
60816976 CATAT
1 CATAT
60816981 ACATGCTTTC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
28 16 0.29
29 40 0.71
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.29
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCTCATT
Found at i:60821386 original size:29 final size:28
Alignment explanation
Indices: 60821323--60821439 Score: 135
Period size: 29 Copynumber: 4.1 Consensus size: 28
60821313 TACATACATG
*
60821323 CATATGGCCCACTAGGCCCAATCTCATT
1 CATATGGCCCATTAGGCCCAATCTCATT
* *
60821351 CATATGGCCCATTAGGTCTAAGTCTCATT
1 CATATGGCCCATTAGGCCCAA-TCTCATT
* *
60821380 CGTATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCC-AATCTCATT
* * *
60821409 CATATGGCCTATTAGTCCCAAATCACATT
1 CATATGGCCCATTAGGCCC-AATCTCATT
60821438 CA
1 CA
60821440 AATACATGCT
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 18 0.23
29 57 0.74
30 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCTCATT
Found at i:60821438 original size:58 final size:57
Alignment explanation
Indices: 60821325--60821438 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 57
60821315 CATACATGCA
* * * *
60821325 TATGGCCCACTAGGCCCAATCTCATTCATATGGCCCATTAGGTCTAAGTCTCATTCG
1 TATGGCCCACTAGGCCCAATCACATTCATATGGCCCATTAGGTCCAAATCACATTCG
* *
60821382 TATGGCCCATTAGGCCCAAATCACATTCATATGGCCTATTA-GTCCCAAATCACATTC
1 TATGGCCCACTAGGCCC-AATCACATTCATATGGCCCATTAGGT-CCAAATCACATTC
60821439 AAATACATGC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
57 18 0.37
58 31 0.63
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATGGCCCATTAGGTCCAAATCACATTCG
Found at i:60823263 original size:22 final size:21
Alignment explanation
Indices: 60823238--60823279 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
60823228 AGTAAAATTT
60823238 TCTATAAAATCTATTTTCAAGC
1 TCTA-AAAATCTATTTTCAAGC
* *
60823260 TCTAAGACTCTATTTTCAAG
1 TCTAAAAATCTATTTTCAAG
60823280 TTATGTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.40
Consensus pattern (21 bp):
TCTAAAAATCTATTTTCAAGC
Found at i:60828435 original size:29 final size:29
Alignment explanation
Indices: 60828402--60828503 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
60828392 TGACGAGATC
60828402 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
60828431 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
60828460 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
60828489 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
60828504 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:60836295 original size:29 final size:29
Alignment explanation
Indices: 60836262--60836363 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
60836252 TGACGAGATC
60836262 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
60836291 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
60836320 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
60836349 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
60836364 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:60838431 original size:30 final size:34
Alignment explanation
Indices: 60838391--60838468 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 34
60838381 TAATTATTTC
* * *
60838391 TACAACTTTTAATT-ATGTCTTG-GTTATT-ATA
1 TACATCTTTTAATTAATGGCTTGCATTATTAATA
*
60838422 TGCAT-TTTTAATTAATGGCTTGCATTATTAATA
1 TACATCTTTTAATTAATGGCTTGCATTATTAATA
60838455 TACATCTTTTAATT
1 TACATCTTTTAATT
60838469 GTGACATGCA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
30 8 0.21
31 10 0.26
32 5 0.13
33 7 0.18
34 8 0.21
ACGTcount: A:0.29, C:0.10, G:0.09, T:0.51
Consensus pattern (34 bp):
TACATCTTTTAATTAATGGCTTGCATTATTAATA
Found at i:60838568 original size:50 final size:52
Alignment explanation
Indices: 60838491--60838622 Score: 180
Period size: 50 Copynumber: 2.6 Consensus size: 52
60838481 ATGTGTTCTA
* * * *
60838491 CATTTAATAAAGTCATGCATTATGTAACTCTCATGTTAGTT-AAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTTAAAGTTTCCAT
*
60838542 CA-TAAATTATGAT-ATGCATTATGTAACTCCCATGTTAGTTAAAGTTTCCAT
1 CATTAAATTAAG-TCATGCATTATGTAACTCCCATGTTAGTTAAAGTTTCCAT
*
60838593 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
60838623 ATTTGCTCAT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
50 32 0.46
51 15 0.21
52 23 0.33
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (52 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTTAAAGTTTCCAT
Found at i:60852059 original size:16 final size:16
Alignment explanation
Indices: 60852038--60852070 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
60852028 TTGTAAAGCC
60852038 CCAAAAATCCTGAAAT
1 CCAAAAATCCTGAAAT
*
60852054 CCAAAAATCTTGAAAT
1 CCAAAAATCCTGAAAT
60852070 C
1 C
60852071 TTGAATTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.24, G:0.06, T:0.21
Consensus pattern (16 bp):
CCAAAAATCCTGAAAT
Found at i:60855676 original size:30 final size:30
Alignment explanation
Indices: 60855632--60855720 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
60855622 CAAAGATAAC
60855632 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
60855661 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
60855691 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
60855721 TGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:60855680 original size:15 final size:15
Alignment explanation
Indices: 60855632--60855711 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
60855622 CAAAGATAAC
*
60855632 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
60855646 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
60855661 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
60855676 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
60855691 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
60855706 AAGAAA
1 AAGAAA
60855712 CCCAAGATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:60855720 original size:15 final size:15
Alignment explanation
Indices: 60855643--60855720 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
60855633 AGAAAACCGA
60855643 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
60855658 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
60855672 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
60855687 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
60855703 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
60855718 ATA
1 ATA
60855721 TGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:60858754 original size:93 final size:93
Alignment explanation
Indices: 60858642--60858812 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
60858632 GCCCATAAGT
* *
60858642 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
60858707 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
60858735 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
60858800 CGAGTTCGGATGC
66 CGAGCTCGGATGC
60858813 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:60858809 original size:46 final size:46
Alignment explanation
Indices: 60858634--60858809 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
60858624 TGTAACCCGC
* *
60858634 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
60858680 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
60858726 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
60858773 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
60858810 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:60861652 original size:41 final size:41
Alignment explanation
Indices: 60861607--60861724 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
60861597 TGAAAGATAA
60861607 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
60861648 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60861678 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60861719 ATGTAG
1 ATGTAG
60861725 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:60861663 original size:71 final size:71
Alignment explanation
Indices: 60861575--60861738 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60861565 CGAGATGTAT
60861575 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60861640 AGGACA
66 AGGACA
60861646 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60861711 AGGACA
66 AGGACA
60861717 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60861739 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60869241 original size:69 final size:71
Alignment explanation
Indices: 60869135--60869295 Score: 285
Period size: 69 Copynumber: 2.3 Consensus size: 71
60869125 GAGATGTATC
60869135 CCATGTAGACAAGA-AGCTACGTGAAAGATAAATGTAGCTAGGTCGC-ATGCGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGT-GCAATGCGTGATTCCAAGTG
60869198 AAGGACA
65 AAGGACA
60869205 CCATGT-GACAAGAGAGCTACGTG-AAGATAAATGTAGCTAGGTGCAATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTGCAATGCGTGATTCCAAGTGA
60869268 AGGACA
66 AGGACA
60869274 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60869296 AGACAAATCG
Statistics
Matches: 88, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
68 2 0.02
69 56 0.64
70 30 0.34
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTGCAATGCGTGATTCCAAGTGA
AGGACA
Found at i:60879220 original size:80 final size:80
Alignment explanation
Indices: 60879136--60879284 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
60879126 TATGGTAACC
* * * *
60879136 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
60879200 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
60879216 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
60879281 CCGG
66 CCGG
60879285 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:60879226 original size:40 final size:38
Alignment explanation
Indices: 60879177--60879284 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
60879167 ATCACGATTT
*
60879177 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
60879217 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
60879257 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
60879285 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:60882476 original size:40 final size:40
Alignment explanation
Indices: 60882432--60882546 Score: 99
Period size: 40 Copynumber: 3.1 Consensus size: 40
60882422 AGAGAGCTAC
60882432 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
1 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
* * * * *
60882472 GTGAAGGACACATGTAGAC-AAG-AG-A-GC-T-A---C--
1 GTGAAAGATAAATGTAG-CTAGGTCGCATGCGTGATTCCAA
60882502 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
1 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
60882542 GTGAA
1 GTGAA
60882547 GGACACCATG
Statistics
Matches: 53, Mismatches: 10, Indels: 24
0.61 0.11 0.28
Matches are distributed among these distances:
29 1 0.02
30 16 0.30
31 1 0.02
32 2 0.04
33 2 0.04
34 1 0.02
35 2 0.04
36 1 0.02
37 2 0.04
38 2 0.04
39 1 0.02
40 21 0.40
41 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.22
Consensus pattern (40 bp):
GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
Found at i:60882500 original size:70 final size:71
Alignment explanation
Indices: 60882411--60882573 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
60882401 GAGATGTATC
60882411 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60882476 AGGACA
66 AGGACA
60882482 -CATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60882546 AGGACA
66 AGGACA
60882552 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60882574 AGACAAATCG
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
70 70 0.77
71 21 0.23
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60883951 original size:29 final size:29
Alignment explanation
Indices: 60883914--60884014 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
60883904 ATGAATGTGA
*
60883914 TTGGGCCTAACGGGCCATATAAATATGAT
1 TTGGGCCTAATGGGCCATATAAATATGAT
* *
60883943 TTGGGCCTAATGGGCCATATACAA-GTGGT
1 TTGGGCCTAATGGGCCATATA-AATATGAT
* *
60883972 TTGGGCCTAATTGGCCATATGAATATGA-
1 TTGGGCCTAATGGGCCATATAAATATGAT
*
60884000 TTGGGCTTAATGGGC
1 TTGGGCCTAATGGGC
60884015 GAGATACAGG
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 15 0.25
29 44 0.72
30 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATAAATATGAT
Found at i:60890049 original size:16 final size:16
Alignment explanation
Indices: 60890028--60890060 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
60890018 TTGTAACGCC
60890028 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
60890044 CCAAAAATCTCGAAAT
1 CCAAAAATCCCGAAAT
60890060 C
1 C
60890061 TTGAATTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.30, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:60891334 original size:24 final size:24
Alignment explanation
Indices: 60891285--60891335 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
60891275 ATGAATCGAC
*
60891285 AAAAGCTGAAATGCCGAAATGCCA
1 AAAAGCTGAAATGCCGAAAAGCCA
* *
60891309 AAAAGCTGAAATGCTGAAAAGTCA
1 AAAAGCTGAAATGCCGAAAAGCCA
60891333 AAA
1 AAA
60891336 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.20, T:0.14
Consensus pattern (24 bp):
AAAAGCTGAAATGCCGAAAAGCCA
Found at i:60891595 original size:29 final size:29
Alignment explanation
Indices: 60891558--60891659 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 29
60891548 TGAATGTTAC
*
60891558 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
60891587 TGGGCCTAATGGGCCATATACAGATG-G-TT
1 TGGGCCTAATGGGCCATATA-A-ATGTGATT
* * *
60891616 TGGGCCTAATTGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
60891644 TAGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
60891660 GATACAGGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
27 2 0.03
28 16 0.26
29 39 0.63
30 2 0.03
31 3 0.05
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:60891631 original size:58 final size:57
Alignment explanation
Indices: 60891558--60891666 Score: 146
Period size: 58 Copynumber: 1.9 Consensus size: 57
60891548 TGAATGTTAC
* * *
60891558 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGATGGTT
1 TGGGCCTAACGGGCCATATAAATATGA-TTAGGCCTAATGGGCCAGATACAGATGGTT
** * *
60891616 TGGGCCTAATTGGCCATATGAATATGATTAGGCTTAATGGGCCAGATACAG
1 TGGGCCTAACGGGCCATATAAATATGATTAGGCCTAATGGGCCAGATACAG
60891667 GTATGTTAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 21 0.48
58 23 0.52
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTAGGCCTAATGGGCCAGATACAGATGGTT
Found at i:60894599 original size:27 final size:26
Alignment explanation
Indices: 60894555--60894606 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60894545 GGACTACCGA
* *
60894555 TTTACCCCTGGAGGGTAAAATGACTAT
1 TTTACCCCTCGAGCGT-AAATGACTAT
*
60894582 TTTACCCCTCGTGCGTAAATGACTA
1 TTTACCCCTCGAGCGTAAATGACTA
60894607 ACTTGTGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
TTTACCCCTCGAGCGTAAATGACTAT
Found at i:60895331 original size:27 final size:26
Alignment explanation
Indices: 60895293--60895352 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
60895283 CCACATATAT
*
60895293 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
60895319 ATATTTGTATCTGGTGACTTTGCCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
60895346 ATATCTG
1 ATATCTG
60895353 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:60898243 original size:2 final size:2
Alignment explanation
Indices: 60898238--60898267 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
60898228 CTAAACACAC
60898238 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60898268 TGATTAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60902355 original size:45 final size:47
Alignment explanation
Indices: 60902288--60902505 Score: 172
Period size: 45 Copynumber: 4.8 Consensus size: 47
60902278 TAAGGTGCCA
* * *
60902288 ATGCCATGTCCTAGACACGGTCTTATACTGGCTATC-TCT-TAAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCT-AGCCG
* *
60902334 -TGCCATGTCCCAAACATGGTCTTACACTGACTATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTC-TAGCCG
* * *
60902381 ATG-CATGTCCCAGACAT-GTC-TACACTGGCTAACGTCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCTA-GCCG
* * * ** * *
60902426 TTG-CATATCCCAGACAT-GT-TTACACTAGCCCTCGTCTCAATG-CG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCTA-GCCG
*
60902470 ATGCCATGTCCCAG--ATGGTCTTACACTGGCTCTCAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT
60902506 AATATGGTCG
Statistics
Matches: 140, Mismatches: 23, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
43 2 0.01
44 7 0.05
45 104 0.74
46 6 0.04
47 18 0.13
48 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCTAGCCG
Found at i:60908960 original size:40 final size:40
Alignment explanation
Indices: 60908905--60909025 Score: 143
Period size: 40 Copynumber: 3.0 Consensus size: 40
60908895 ATGATACCCA
* * * *
60908905 GGCTAAGTCCCGAAGGCATTTATACTAGTGATTATATCCG
1 GGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCG
* * * *
60908945 GGCTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCG
1 GGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCG
* * *
60908985 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCG
1 GGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCG
60909025 G
1 G
60909026 TTAAATCCCG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCG
Found at i:60909039 original size:39 final size:40
Alignment explanation
Indices: 60908908--60909039 Score: 142
Period size: 40 Copynumber: 3.3 Consensus size: 40
60908898 ATACCCAGGC
* * * * *
60908908 TAAGTCCCGAAGGCATTTATACTAGTGATTATATCCGGGC
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGT
* * * *
60908948 TAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGT
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGT
* *
60908988 TAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGT
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGT
60909027 TAA-ATCCCGAAGG
1 TAAGA-CCCGAAGG
60909040 TACGTGACTC
Statistics
Matches: 76, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
38 1 0.01
39 14 0.18
40 61 0.80
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (40 bp):
TAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGT
Found at i:60916253 original size:45 final size:44
Alignment explanation
Indices: 60916096--60916269 Score: 206
Period size: 45 Copynumber: 3.8 Consensus size: 44
60916086 ATTTGGGCAT
60916096 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
60916141 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
60916189 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
60916234 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60916270 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.34
46 32 0.29
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:60919040 original size:48 final size:47
Alignment explanation
Indices: 60918987--60919078 Score: 175
Period size: 48 Copynumber: 1.9 Consensus size: 47
60918977 CGTATGATAT
60918987 TATGATTCTGTTTCTTCTACTTGATGCTTCATCTGTATATATATGATC
1 TATGATTCTGTTTCTTCTACTTGATGCTTCATCTG-ATATATATGATC
60919035 TATGATTCTGTTTCTTCTACTTGATGCTTCATCTGATATATATG
1 TATGATTCTGTTTCTTCTACTTGATGCTTCATCTGATATATATG
60919079 TATGGGAAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 9 0.20
48 35 0.80
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (47 bp):
TATGATTCTGTTTCTTCTACTTGATGCTTCATCTGATATATATGATC
Found at i:60919270 original size:15 final size:15
Alignment explanation
Indices: 60919231--60919309 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
60919221 GTATCTTGGG
*
60919231 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
60919246 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
60919261 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
60919275 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
60919290 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
60919304 TTTCTT
1 TTTCTT
60919310 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:60919294 original size:29 final size:29
Alignment explanation
Indices: 60919222--60919308 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
60919212 CATAGTATCG
* * * *
60919222 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
60919252 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
60919281 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
60919309 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:60921736 original size:46 final size:45
Alignment explanation
Indices: 60921683--60921858 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
60921673 TATTTGGGCA
60921683 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
60921729 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
60921776 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
60921822 -CCTGAGCTCGTTGATTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60921859 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 66 0.60
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:60921841 original size:93 final size:93
Alignment explanation
Indices: 60921679--60921850 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
60921669 AGGATATTTG
*
60921679 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
60921744 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
60921772 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
*
60921836 TTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
60921851 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:60924605 original size:50 final size:50
Alignment explanation
Indices: 60924488--60924723 Score: 269
Period size: 50 Copynumber: 4.7 Consensus size: 50
60924478 CTGGTACGCA
* *
60924488 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AACAATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
* * * *
60924537 TAGTAGCCTACAGTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
* * * * * * ** *
60924587 TAGTAGACTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATCTGATACACG
* *
60924638 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
* *
60924688 TAGTATCCTGAACTTAGTACTACACACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
60924724 AACCATCTTA
Statistics
Matches: 153, Mismatches: 30, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
49 31 0.20
50 85 0.56
51 36 0.24
52 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACACG
Found at i:60924748 original size:101 final size:101
Alignment explanation
Indices: 60924475--60924768 Score: 290
Period size: 101 Copynumber: 2.9 Consensus size: 101
60924465 TAACTGAAGT
* * * *
60924475 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC--AACAATCTGATACACGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAACAATCTGATACACAT
* * *
60924538 AGTAGCCTACAGTTAGTACTACACACGTGACCTAAC
66 AGTAGCCTGCACTTAGTACTACACATGTGACCTAAC
* ** * * **** * * **
60924574 CATCTAATACACGTAGTAGACTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTATGCA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT-AAACAATCTGATACACA
60924638 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC
65 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC
* * * * *
60924675 TATCTGGTACACGTAGTATCCTGAACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT-AAACAATCTGATACACA
* * *
60924740 TAG-CGCCTGCACATAGTACTATACATGTG
65 TAGTAGCCTGCACTTAGTACTACACATGTG
60924769 TTCTCACAAT
Statistics
Matches: 150, Mismatches: 41, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
99 37 0.25
101 102 0.68
102 11 0.07
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (101 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAACAATCTGATACACAT
AGTAGCCTGCACTTAGTACTACACATGTGACCTAAC
Found at i:60927409 original size:51 final size:50
Alignment explanation
Indices: 60927222--60927417 Score: 200
Period size: 50 Copynumber: 3.9 Consensus size: 50
60927212 CACTTGTAGC
* *
60927222 CGAAGTTATCTGGTACGCATAGTAGCCTGCACTTAGTACTATACA--TGCGA
1 CGAA-TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG-GA
* * * * *
60927272 CCAATTATCCGGTACACGTAGTAGCCTACACTTAGTACTACATACGT-GA
1 CGAATTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGGA
* ** * * *
60927321 CTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGGT
1 C-GAATTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGGA
* *
60927372 CGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACAC
1 CGAA-TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACAC
60927418 ATGACCTCAC
Statistics
Matches: 119, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
49 37 0.31
50 44 0.37
51 38 0.32
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (50 bp):
CGAATTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGGA
Found at i:60937467 original size:21 final size:19
Alignment explanation
Indices: 60937429--60937467 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
60937419 CTGTAATTTG
*
60937429 AAAATTTTCTATGTTTTCC
1 AAAATTTTCTAAGTTTTCC
60937448 AAAATTTTTCCTAAGTTTTC
1 AAAA-TTTT-CTAAGTTTTC
60937468 ATTTTAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.51
Consensus pattern (19 bp):
AAAATTTTCTAAGTTTTCC
Found at i:60939974 original size:39 final size:39
Alignment explanation
Indices: 60939942--60940087 Score: 222
Period size: 39 Copynumber: 3.8 Consensus size: 39
60939932 TAAAAACATG
* * * *
60939942 TATTAAAGATGTCCAAACTATGACATAATTAAAAAATCC
1 TATTAATGATGTTCAAATTATGACATAATTAAAAAATCA
* *
60939981 TATTAATGATGTTTAAATTATGACATAATTAAAAAATCT
1 TATTAATGATGTTCAAATTATGACATAATTAAAAAATCA
*
60940020 TATTAATGATGTTCAAATTATGACATAATTAAAAACTCA
1 TATTAATGATGTTCAAATTATGACATAATTAAAAAATCA
60940059 TATTAATGATGTT-AAATTATGACATAATT
1 TATTAATGATGTTCAAATTATGACATAATT
60940088 TGTAACACCC
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 16 0.16
39 83 0.84
ACGTcount: A:0.46, C:0.09, G:0.08, T:0.37
Consensus pattern (39 bp):
TATTAATGATGTTCAAATTATGACATAATTAAAAAATCA
Found at i:60941819 original size:2 final size:2
Alignment explanation
Indices: 60941807--60941840 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
60941797 ACTTTAACAC
* *
60941807 AT AT TT AT AT AT AC AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60941841 CCCTTTCAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60951148 original size:22 final size:21
Alignment explanation
Indices: 60951095--60951148 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
60951085 TGGCCTGCAG
**
60951095 CACGGGCGTGTCCCAGGGTCA
1 CACGGGCGTGTCCCAGGACCA
* * *
60951116 CACAGGTGTGTCCCTTGGACCA
1 CACGGGCGTGTCCC-AGGACCA
60951138 CACGGGCGTGT
1 CACGGGCGTGT
60951149 GAGCCCTGCA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (21 bp):
CACGGGCGTGTCCCAGGACCA
Found at i:60955743 original size:27 final size:27
Alignment explanation
Indices: 60955713--60956272 Score: 320
Period size: 27 Copynumber: 20.7 Consensus size: 27
60955703 TTAGTTTACC
*
60955713 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
60955740 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
60955767 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
60955794 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** * *
60955821 AAATTACTGAAATA-CCCTCAACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** * *
60955848 AAATTATTGAAATA-CCCTCAACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * *
60955875 AAATTACCAAAGTACCCCCGATTTTTA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
60955902 AAATTACCTAAATA-TCCTCGATTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * * *
60955929 AAATTATCGAAATA-CCCTCAGTTTGCA
1 AAATTACCAAAATACCCCTGA-TTTGTA
***
60955956 AAATTATTGAAATA-CCCTCGATTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* ** * **
60955983 TAATTACTGAAATACTCCT-ATAAGATA
1 AAATTACCAAAATACCCCTGATTTG-TA
* *** * * *
60956010 GAATTACCATTTTA-CCTTCAATTTATA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *** *
60956037 GAATTACCATTTTA-CCCTCGATTTATA
1 AAATTACCAAAATACCCCT-GATTTGTA
** * * *
60956064 AAATTACTGAAATACCCTTGGTTTACT-
1 AAATTACCAAAATACCCCTGATTT-GTA
*
60956091 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
60956118 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
60956145 AAAATACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
**
60956172 AAATTACCAAAATACCCCT-ATAGGGTA
1 AAATTACCAAAATACCCCTGAT-TTGTA
* * **
60956199 GAATTACCGAAATACCCCTG-TAAGGTA
1 AAATTACCAAAATACCCCTGAT-TTGTA
* * **
60956226 GAATTACCGAAATACCCCTG-TAGGGTA
1 AAATTACCAAAATACCCCTGAT-TTGTA
* *
60956253 GAATTACTAAAATACCCCTG
1 AAATTACCAAAATACCCCTG
60956273 TAGGGTGGAA
Statistics
Matches: 441, Mismatches: 76, Indels: 32
0.80 0.14 0.06
Matches are distributed among these distances:
26 15 0.03
27 412 0.93
28 14 0.03
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:60956189 original size:81 final size:81
Alignment explanation
Indices: 60955713--60956244 Score: 366
Period size: 81 Copynumber: 6.6 Consensus size: 81
60955703 TTAGTTTACC
* * * *
60955713 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCCTAATTTGTAAAATTACCAAA
60955778 ATACCC-CTAGTTTGTA
66 ATACCCTC-AGTTTGTA
* * * ***
60955794 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATA-CCCTCAACTTGTAAAATTATTGA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCCT-AATTTGTAAAATTACCAA
**
60955858 AATACCCTCAACTTGTA
65 AATACCCTCAGTTTGTA
* * * * * * * *
60955875 AAATTACCAAAGTACCCCCGATTTTTAAAATTACCTAAATA-TCCTCGATTTGTAAAATTATCGA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCCT-AATTTGTAAAATTACCAA
*
60955939 AATACCCTCAGTTTGCA
65 AATACCCTCAGTTTGTA
*** * * * ** *
60955956 AAATTATTGAAATA-CCCTCGATTTGTATAATTACTGAAATACTCCT-ATAAGATAGAATTACCA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCGAAATACCCCTAATTTG-TAAAATTACCA
*** * * *
60956019 TTTTACCTTCAATTTATA
64 AAATACCCTCAGTTTGTA
* *** * * * ** *
60956037 GAATTACCATTTTA-CCCTCGATTTATAAAATTACTGAAATACCCTTGGTTTACT-AAATTACCA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCGAAATACCCCTAATTT-GTAAAATTACCA
*
60956100 AAATACCC-CTGGTTTGTA
64 AAATACCCTC-AGTTTGTA
* * * *
60956118 AAATTACCAAAATACCCCTGGTTTGTAAAAATACCAAAATACCCCTAATTTGTGAAATTACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCCTAATTTGTAAAATTACCAAA
**
60956183 ATACCC-CTA-TAGGGTA
66 ATACCCTC-AGT-TTGTA
* * ** *
60956199 GAATTACCGAAATACCCCTG-TAAGGTAGAATTACCGAAATACCCCT
1 AAATTACCAAAATACCCCTGAT-TTGTAAAATTACCGAAATACCCCT
60956245 GTAGGGTAGA
Statistics
Matches: 349, Mismatches: 90, Indels: 24
0.75 0.19 0.05
Matches are distributed among these distances:
80 14 0.04
81 324 0.93
82 11 0.03
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCCTAATTTGTAAAATTACCAAA
ATACCCTCAGTTTGTA
Found at i:60956273 original size:27 final size:27
Alignment explanation
Indices: 60956092--60956314 Score: 186
Period size: 27 Copynumber: 8.3 Consensus size: 27
60956082 TGGTTTACTA
** *
60956092 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCAAAATACCCCT-GTAGGGTAG
** *
60956119 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCAAAATACCCCT-GTAGGGTAG
* * **
60956146 AAATACCAAAATACCCCT-AATTTGT-G
1 AATTACCAAAATACCCCTGTA-GGGTAG
*
60956172 AAATTACCAAAATACCCCTATAGGGTAG
1 -AATTACCAAAATACCCCTGTAGGGTAG
* *
60956200 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
60956227 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
60956254 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
60956281 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
60956307 AATTACCA
1 AATTACCA
60956315 TTTTACCTCT
Statistics
Matches: 169, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
26 16 0.09
27 151 0.89
28 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:60956789 original size:22 final size:22
Alignment explanation
Indices: 60956737--60956801 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
60956727 TTAAAGCCTT
* *
60956737 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
60956759 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
60956781 CTGATTATGGCTCTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
60956802 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:60956994 original size:27 final size:27
Alignment explanation
Indices: 60956963--60957056 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 27
60956953 CTGTTAAGTG
*
60956963 GCCACATTATCTGTTTCTGATGGCTCT
1 GCCACAATATCTGTTTCTGATGGCTCT
*
60956990 GCCACAAATATCTG-TTCTGCTGGCTCT
1 GCCAC-AATATCTGTTTCTGATGGCTCT
* * * *
60957017 GTCACAATATCTGTATCTGGTGACTCT
1 GCCACAATATCTGTTTCTGATGGCTCT
**
60957044 GTTACAATATCTG
1 GCCACAATATCTG
60957057 ATAACTGAGC
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 8 0.14
27 43 0.74
28 7 0.12
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.37
Consensus pattern (27 bp):
GCCACAATATCTGTTTCTGATGGCTCT
Found at i:60958695 original size:29 final size:29
Alignment explanation
Indices: 60958662--60958793 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
60958652 GTGACGAGAT
*
60958662 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
60958691 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
60958720 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
60958749 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
60958778 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60958794 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:60960313 original size:6 final size:6
Alignment explanation
Indices: 60960298--60960388 Score: 62
Period size: 6 Copynumber: 14.8 Consensus size: 6
60960288 ATTCTATTAC
* * * *
60960298 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTAATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
60960347 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGA-TT CTGAT
60960389 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:60960329 original size:31 final size:31
Alignment explanation
Indices: 60960275--60960377 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 31
60960265 TTGCATTCAC
* *
60960275 ATTCTGATTTTTTATTCTATTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
60960307 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
60960338 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
60960369 ATTCTGATT
1 ATTCTGATT
60960378 CTAGTTCTGA
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 56 0.89
32 7 0.11
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:60962093 original size:43 final size:42
Alignment explanation
Indices: 60962046--60962144 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 42
60962036 TCCTAGACGT
* *
60962046 GGTCTTACATGTAATCAAACATTGATGCC-ACTGTCCCAGACAG
1 GGTCTTACATGTAATCAAACA-CGATGCCGA-TGTCCCAAACAG
* * * * *
60962089 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAAACAT
1 GGTCTTACATGTAATCAAACACGATGCCGATGTCCCAAACAG
60962131 GGTCTTACATGTAA
1 GGTCTTACATGTAA
60962145 AACAAAAGGC
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 28 0.61
43 18 0.39
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAACACGATGCCGATGTCCCAAACAG
Found at i:60964795 original size:49 final size:49
Alignment explanation
Indices: 60964735--60964954 Score: 341
Period size: 49 Copynumber: 4.5 Consensus size: 49
60964725 TAGATATATG
* * *
60964735 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
60964784 TGTGATGAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
* * *
60964833 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
* * *
60964882 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
* *
60964931 TGTGATAAGGCCTAATGGCTAATG
1 TGTGATGAGGCCTAATGGCCAATG
60964955 TAAATATATG
Statistics
Matches: 162, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 162 1.00
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
Found at i:60965100 original size:37 final size:37
Alignment explanation
Indices: 60965050--60965134 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
60965040 GGAATATGTT
*
60965050 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
60965087 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
60965124 CCGGGTAAGAC
1 CCGGGTAAGAC
60965135 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:60967033 original size:18 final size:19
Alignment explanation
Indices: 60967000--60967035 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
60966990 CCCTGTTCTG
60967000 ACTTTTAAAAATAATTAAA
1 ACTTTTAAAAATAATTAAA
60967019 ACTTTTAAAAA-AATTAA
1 ACTTTTAAAAATAATTAA
60967036 TTATGGGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
ACTTTTAAAAATAATTAAA
Found at i:60968689 original size:2 final size:2
Alignment explanation
Indices: 60968682--60968710 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
60968672 TGAAGCAAAT
60968682 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60968711 TGATGAGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60978177 original size:43 final size:43
Alignment explanation
Indices: 60978116--60978202 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
60978106 CAAAAACTTA
60978116 GAAAATTTTCAAATTTTGAAAGGTCATACGCCCGTGTAAACCG
1 GAAAATTTTCAAATTTTGAAAGGTCATACGCCCGTGTAAACCG
60978159 GAAAATTTTCAAATTTTGAAAGGTCATACGCCCGTGTAAACCG
1 GAAAATTTTCAAATTTTGAAAGGTCATACGCCCGTGTAAACCG
60978202 G
1 G
60978203 CCATGTGCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (43 bp):
GAAAATTTTCAAATTTTGAAAGGTCATACGCCCGTGTAAACCG
Found at i:60979370 original size:42 final size:42
Alignment explanation
Indices: 60979270--60979383 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 42
60979260 AACATATACA
* *
60979270 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAACATTG
1 ATGCC-ATGTCCCAGACATGGTCTTACACGAAATCAAACATTG
* *
60979313 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATA-TG
1 ATGCCA-TGTCCCAGACATGGTCTTACACGAAATCAAACATTG
*
60979355 ATGCTGATGTCCCAGACATGGTCTTACAC
1 ATGC-CATGTCCCAGACATGGTCTTACAC
60979384 ATAAAACAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 28 0.44
43 35 0.56
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAAATCAAACATTG
Found at i:60982892 original size:71 final size:72
Alignment explanation
Indices: 60982810--60982971 Score: 238
Period size: 71 Copynumber: 2.3 Consensus size: 72
60982800 CATCATGTGT
* * * **
60982810 ACAAGAAAGCTACGAGACACCCTGTA-GTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
60982874 CATGTAG
66 CATGTAG
* * *
60982881 ACAAGAGAGCTACGTGA-AAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
60982945 CATGTAG
66 CATGTAG
60982952 ACAAGAGAGCTACGAGACAA
1 ACAAGAGAGCTACGAGACAA
60982972 ATCGGTTAGG
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
70 3 0.04
71 75 0.94
72 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (72 bp):
ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
CATGTAG
Found at i:60990399 original size:71 final size:72
Alignment explanation
Indices: 60990317--60990478 Score: 222
Period size: 71 Copynumber: 2.3 Consensus size: 72
60990307 CATCATGTGT
* * * **
60990317 ACAAGAAAGCTACGAGACACCCTGTA-GTAGCTAGG-CTACATGCGTGATTCCAAGTGAAGGACA
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTC-ACATGCGTGATTCCAAGTGAAGGACA
60990380 CCATGTAG
65 CCATGTAG
* * *
60990388 ACAAGAGAGCTACGTGA-AAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
60990452 CATGTAG
66 CATGTAG
60990459 ACAAGAGAGCTACGAGACAA
1 ACAAGAGAGCTACGAGACAA
60990479 ATCGGTTAGG
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
70 3 0.04
71 73 0.92
72 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (72 bp):
ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
CATGTAG
Found at i:60997062 original size:40 final size:40
Alignment explanation
Indices: 60996971--60997119 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
60996961 AAATTGAATG
* * * *
60996971 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-G-AAAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
* *
60997009 -TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
* * *
60997048 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGAT
* *
60997088 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
60997120 AAATCGTGAT
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
37 28 0.30
38 1 0.01
39 5 0.05
40 58 0.62
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
Found at i:60997134 original size:40 final size:39
Alignment explanation
Indices: 60997009--60997151 Score: 160
Period size: 40 Copynumber: 3.6 Consensus size: 39
60996999 ATGCTGAAAT
* * *
60997009 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAG-TA
* *
60997049 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAG-TA
* * *
60997089 AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGT-A
* * *
60997129 TATCCGGGTTAAGTCCCGTAGGC
1 TATCCGGGCTAAGACCCGAAGGC
60997152 CTTGGTGCGG
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 87 0.99
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTA
Found at i:60999023 original size:54 final size:54
Alignment explanation
Indices: 60998957--60999065 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
60998947 GTGATAAGGT
*** *
60998957 ATTTCTAAAAGTATCCTTGTGGAGGAAGGTTCTTAAATTCGGTAAAAAGGGTAA
1 ATTTCTAAAAGTATCCCCATGGAGAAAGGTTCTTAAATTCGGTAAAAAGGGTAA
*
60999011 ATTTCTAAAAGTATCCCCATGGAGAAAGGTTCTTAGATTCGGTAAAAAGGGTAA
1 ATTTCTAAAAGTATCCCCATGGAGAAAGGTTCTTAAATTCGGTAAAAAGGGTAA
60999065 A
1 A
60999066 CTGAGTCCGC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (54 bp):
ATTTCTAAAAGTATCCCCATGGAGAAAGGTTCTTAAATTCGGTAAAAAGGGTAA
Found at i:61005277 original size:39 final size:40
Alignment explanation
Indices: 61005161--61005406 Score: 365
Period size: 40 Copynumber: 6.2 Consensus size: 40
61005151 TGAATGATAC
* * *
61005161 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
61005201 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
61005241 CCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
61005280 CCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
61005319 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
61005359 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
61005399 CC-GGCTAA
1 CCGGGCTAA
61005407 ATTCCGAAGA
Statistics
Matches: 191, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 83 0.43
40 106 0.55
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:61005370 original size:118 final size:120
Alignment explanation
Indices: 61005161--61005406 Score: 374
Period size: 118 Copynumber: 2.1 Consensus size: 120
61005151 TGAATGATAC
* *
61005161 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
* * *
61005226 TGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTTGTTATAT
66 TGCGAGTTGCTATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
*
61005280 CCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTT
* **
61005343 GTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
65 GTGCGAGTTGCTATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
61005399 CC-GGCTAA
1 CCGGGCTAA
61005407 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
118 76 0.66
119 40 0.34
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGGTTATAT
Found at i:61014243 original size:29 final size:29
Alignment explanation
Indices: 61014210--61014370 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
61014200 GTGACGAGAT
61014210 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
61014239 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
61014268 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
61014297 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
61014326 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
61014355 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
61014371 AGTTCGGAGG
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:61022336 original size:29 final size:29
Alignment explanation
Indices: 61022303--61022463 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
61022293 GTGACGAGAT
61022303 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
61022332 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
61022361 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
61022390 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
61022419 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
61022448 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
61022464 AGTTCGGAGG
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:61024771 original size:40 final size:40
Alignment explanation
Indices: 61024716--61024963 Score: 356
Period size: 40 Copynumber: 6.2 Consensus size: 40
61024706 TGAATGATAC
* * *
61024716 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
61024756 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
**
61024796 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
61024836 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
61024876 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
61024916 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
61024956 CC-GGCTAA
1 CCGGGCTAA
61024964 ATTCCGAAGA
Statistics
Matches: 189, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 5 0.03
40 182 0.96
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:61031122 original size:24 final size:24
Alignment explanation
Indices: 61031023--61031123 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
61031013 AAGTTTGTCA
*
61031023 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
61031047 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
61031071 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
61031095 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
61031119 GGAGA
1 GGAGA
61031124 ATAGTGTTAG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.33, C:0.02, G:0.41, T:0.25
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:61032096 original size:8 final size:8
Alignment explanation
Indices: 61032083--61032113 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
61032073 CTAGATCGGC
61032083 AAAAGCCG
1 AAAAGCCG
61032091 AAAAGCCG
1 AAAAGCCG
*
61032099 AAATGCCG
1 AAAAGCCG
61032107 AAAAGCC
1 AAAAGCC
61032114 AGTATTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:61032482 original size:27 final size:26
Alignment explanation
Indices: 61032442--61032553 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
61032432 AGGAAGCGTC
* *
61032442 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGAT
*
61032469 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
61032496 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
61032524 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
61032550 CTGG
1 CTGG
61032554 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:61032546 original size:54 final size:54
Alignment explanation
Indices: 61032442--61032553 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
61032432 AGGAAGCGTC
* *
61032442 CTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
61032496 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
61032550 CTGG
1 CTGG
61032554 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:61039680 original size:42 final size:43
Alignment explanation
Indices: 61039580--61039691 Score: 111
Period size: 42 Copynumber: 2.6 Consensus size: 43
61039570 CAATGCCGAC
** * **
61039580 GTCCCAGATGTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACATGTAAATCAATATCGATGCCAAT
*
61039623 GTCCCAGACAGGGTCTTACATG-AAATCAGATA-CGATGCCAAT
1 GTCCCAGACATGGTCTTACATGTAAATCA-ATATCGATGCCAAT
* * * *
61039665 GTCCTAGGCATGGTCTTATACGTAAAT
1 GTCCCAGACATGGTCTTACATGTAAAT
61039692 ATCAATCGAG
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 30 0.54
43 26 0.46
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGTAAATCAATATCGATGCCAAT
Found at i:61046736 original size:21 final size:23
Alignment explanation
Indices: 61046691--61046736 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
61046681 GATGTTAAAG
61046691 TTGGCTTGGTTATACTGTTTGAA
1 TTGGCTTGGTTATACTGTTTGAA
61046714 TTGG-TTGG-TATA-TGTTTGCAA
1 TTGGCTTGGTTATACTGTTTG-AA
61046735 TT
1 TT
61046737 ATTGATGTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.27
21 8 0.36
22 4 0.18
23 4 0.18
ACGTcount: A:0.17, C:0.07, G:0.26, T:0.50
Consensus pattern (23 bp):
TTGGCTTGGTTATACTGTTTGAA
Found at i:61047175 original size:17 final size:17
Alignment explanation
Indices: 61047153--61047185 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
61047143 GGCCATATGG
61047153 CCTACTCACACAGGCGA
1 CCTACTCACACAGGCGA
*
61047170 CCTACTTACACAGGCG
1 CCTACTCACACAGGCG
61047186 TGTGATCGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.39, G:0.18, T:0.15
Consensus pattern (17 bp):
CCTACTCACACAGGCGA
Found at i:61049151 original size:26 final size:25
Alignment explanation
Indices: 61049107--61049159 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
61049097 TTAATATGTG
* *
61049107 TTTAATGTGTCTAGCTTAGGACATAA
1 TTTAATGTGTCTAACTTAGAACA-AA
*
61049133 TTTAATGTGTCTAATTTAGAACAAA
1 TTTAATGTGTCTAACTTAGAACAAA
61049158 TT
1 TT
61049160 CATTAGCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (25 bp):
TTTAATGTGTCTAACTTAGAACAAA
Found at i:61049480 original size:53 final size:53
Alignment explanation
Indices: 61049392--61049492 Score: 166
Period size: 53 Copynumber: 1.9 Consensus size: 53
61049382 AGAAGAGCTG
**
61049392 CTGGTGCAGGAAACAGCATTAAAAAAGCTGTTGGTGCATTGTTTGGGACGCTA
1 CTGGTGCAGGAAACAGCATTAAAAAAGCTACTGGTGCATTGTTTGGGACGCTA
* *
61049445 CTGGTGCAGGAAACAGCATTAATAGAGCTACTGGTGCATTGTTTGGGA
1 CTGGTGCAGGAAACAGCATTAAAAAAGCTACTGGTGCATTGTTTGGGA
61049493 TAGCATAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.27
Consensus pattern (53 bp):
CTGGTGCAGGAAACAGCATTAAAAAAGCTACTGGTGCATTGTTTGGGACGCTA
Found at i:61050725 original size:10 final size:10
Alignment explanation
Indices: 61050710--61050738 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
61050700 CGTATTTGTA
61050710 AAAAAAATTC
1 AAAAAAATTC
61050720 AAAAAAATTC
1 AAAAAAATTC
61050730 AAAAAAATT
1 AAAAAAATT
61050739 TTGTGAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:61053927 original size:26 final size:25
Alignment explanation
Indices: 61053883--61053935 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
61053873 TTAATATGTG
*
61053883 TTTAATGTGTCTATCTTAGGACATAA
1 TTTAATGTGTCTATCTTAGAACA-AA
61053909 TTTAATGTGTCTAAT-TTAGAACAAA
1 TTTAATGTGTCT-ATCTTAGAACAAA
61053934 TT
1 TT
61053936 AATTAGCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 4 0.16
26 19 0.76
27 2 0.08
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.43
Consensus pattern (25 bp):
TTTAATGTGTCTATCTTAGAACAAA
Found at i:61054688 original size:22 final size:20
Alignment explanation
Indices: 61054663--61054702 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
61054653 GCTAGGAAAC
*
61054663 TTCAAGGAAGCTTGCAAGGATG
1 TTCAA-GAAACTT-CAAGGATG
61054685 TTCAAGAAACTTCAAGGA
1 TTCAAGAAACTTCAAGGA
61054703 AATTTCCAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 6 0.35
22 5 0.29
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.23
Consensus pattern (20 bp):
TTCAAGAAACTTCAAGGATG
Found at i:61055726 original size:6 final size:6
Alignment explanation
Indices: 61055715--61055739 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
61055705 GCCCTTGTGC
61055715 ATACTG ATACTG ATACTG ATACTG A
1 ATACTG ATACTG ATACTG ATACTG A
61055740 AAGGTGCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (6 bp):
ATACTG
Found at i:61055951 original size:14 final size:14
Alignment explanation
Indices: 61055919--61055952 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
61055909 GTTTTTGGAT
61055919 TTTTATGATTTATA
1 TTTTATGATTTATA
* *
61055933 ATTTATGATTTATG
1 TTTTATGATTTATA
61055947 TTTTAT
1 TTTTAT
61055953 TTACCGTGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (14 bp):
TTTTATGATTTATA
Found at i:61058955 original size:20 final size:20
Alignment explanation
Indices: 61058930--61058975 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
61058920 AGCCCTTGAA
* *
61058930 GAACCCTTGAATTTGCATTT
1 GAACCCTTGAATTTACATTC
61058950 GAACCCTTGAATTTACATTC
1 GAACCCTTGAATTTACATTC
61058970 GAACCC
1 GAACCC
61058976 CTCCACTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (20 bp):
GAACCCTTGAATTTACATTC
Found at i:61070480 original size:50 final size:49
Alignment explanation
Indices: 61070362--61070537 Score: 194
Period size: 50 Copynumber: 3.5 Consensus size: 49
61070352 CTAGTACGCA
* * **
61070362 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
61070411 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* *** * *
61070461 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAATACACG
61070512 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
61070538 TGCGACCTCA
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 29 0.27
50 41 0.38
51 36 0.33
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:61070537 original size:101 final size:99
Alignment explanation
Indices: 61070362--61070548 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 99
61070352 CTAGTACGCA
* * *
61070362 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
61070427 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * *
61070461 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
61070525 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
61070549 AATAGATCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.39
101 43 0.56
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:61075178 original size:42 final size:42
Alignment explanation
Indices: 61075078--61075191 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 42
61075068 AACATATACA
* *
61075078 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAACATTG
1 ATGCC-ATGTCCCAGACATGGTCTTACACGAAATCAAACATTG
* *
61075121 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATA-TG
1 ATGCCA-TGTCCCAGACATGGTCTTACACGAAATCAAACATTG
*
61075163 ATGCTGATGTCCCAGACATGGTCTTACAC
1 ATGC-CATGTCCCAGACATGGTCTTACAC
61075192 ATAAAACAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 28 0.44
43 35 0.56
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAAATCAAACATTG
Found at i:61086179 original size:67 final size:70
Alignment explanation
Indices: 61086101--61086258 Score: 182
Period size: 67 Copynumber: 2.3 Consensus size: 70
61086091 CATCATGTGT
* * * **
61086101 ACAAGAAAGCTACGAGACACCCTGTA-GTAGCTAGGTCACATGCGTGA-T-AGTGAAGGATC-CC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCAGTGAAGGA-CACC
61086162 ATGTAG
65 ATGTAG
* * *
61086168 ACAAGAGAGCTACGTGA-AAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATT-C-AGTGAAGGACAC
61086232 CATGTAG
64 CATGTAG
61086239 ACAAGAGAGCTACGAGACAA
1 ACAAGAGAGCTACGAGACAA
61086259 ATCGGTTAGG
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
66 3 0.04
67 35 0.47
68 1 0.01
70 1 0.01
71 33 0.44
72 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (70 bp):
ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCAGTGAAGGACACCA
TGTAG
Found at i:61104789 original size:45 final size:45
Alignment explanation
Indices: 61104692--61104867 Score: 230
Period size: 45 Copynumber: 4.0 Consensus size: 45
61104682 CCGAATTCAT
* * **
61104692 TCACCGGCATT-TCGCCTGCTAGGCTTGAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
* * * *
61104735 TCACCGGCATTATAGCCTACTAGGCTTAAAGGCCCGAGTGGTATT
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
* *
61104780 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
* *
61104825 TCACGGGCATTATAGCCTACTACGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTA
61104868 CTGAACGATA
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 11 0.09
44 15 0.13
45 90 0.78
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
Found at i:61104839 original size:90 final size:88
Alignment explanation
Indices: 61104691--61104861 Score: 261
Period size: 90 Copynumber: 1.9 Consensus size: 88
61104681 CCCGAATTCA
* **
61104691 TTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGAATAGTATCTCACCGGCATTATAGCCTACT
1 TTCACCGGCATTTAGCCTGCTAGGCTCAAAGCCCGAATAGTATCTCACCGGCATTATAGCCTACT
* *
61104756 AGGCTTAAAGGCCCGAGTGGTAT
66 ACGCTCAAAGGCCCGAGTGGTAT
* *
61104779 TTCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACGGGCATTATAGCCTA
1 TTCACCGGCATT-TAGCCTGCTAGGCTCAAA-GCCCGAATAGTATCTCACCGGCATTATAGCCTA
61104844 CTACGCTCAAAGGCCCGA
64 CTACGCTCAAAGGCCCGA
61104862 ATAGTACTGA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
88 11 0.15
89 15 0.20
90 48 0.65
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (88 bp):
TTCACCGGCATTTAGCCTGCTAGGCTCAAAGCCCGAATAGTATCTCACCGGCATTATAGCCTACT
ACGCTCAAAGGCCCGAGTGGTAT
Found at i:61106750 original size:60 final size:59
Alignment explanation
Indices: 61106623--61106761 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 59
61106613 ATCAGTGTTA
* *
61106623 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTAT
* *
61106684 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TAT
* *
61106744 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
61106762 TAACACAGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
59 3 0.04
60 51 0.74
61 12 0.17
62 3 0.04
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACAGAGTAT
Found at i:61106797 original size:19 final size:20
Alignment explanation
Indices: 61106754--61106809 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
61106744 ATTGGGCCTT
61106754 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
61106774 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
61106793 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
61106810 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:61108105 original size:17 final size:19
Alignment explanation
Indices: 61108083--61108121 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
61108073 TGAGAGAAGG
*
61108083 ATAGAA-AA-GAATAAAAA
1 ATAGAAGAAGGAAAAAAAA
61108100 ATAGAAGAAGGAAAAAAAA
1 ATAGAAGAAGGAAAAAAAA
61108119 ATA
1 ATA
61108122 AATCCTAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 11 0.58
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10
Consensus pattern (19 bp):
ATAGAAGAAGGAAAAAAAA
Found at i:61111333 original size:60 final size:60
Alignment explanation
Indices: 61111206--61111344 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 60
61111196 ATCAGTGTTA
* * *
61111206 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTAATAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTAAGAGAGTAT
* * *
61111267 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-CGAGA-TAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTAAGAGAGTAT
* *
61111327 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
61111345 TAACACAGTT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
60 50 0.74
61 15 0.22
62 3 0.04
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (60 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTAAGAGAGTAT
Found at i:61111380 original size:19 final size:20
Alignment explanation
Indices: 61111337--61111392 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
61111327 ATTGGGCCTT
61111337 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
61111357 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
61111376 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
61111393 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:61112688 original size:17 final size:19
Alignment explanation
Indices: 61112666--61112704 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
61112656 TGAGAGAAGG
*
61112666 ATAGAA-AA-GAATAAAAA
1 ATAGAAGAAGGAAAAAAAA
61112683 ATAGAAGAAGGAAAAAAAA
1 ATAGAAGAAGGAAAAAAAA
61112702 ATA
1 ATA
61112705 AATCCTAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 11 0.58
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10
Consensus pattern (19 bp):
ATAGAAGAAGGAAAAAAAA
Found at i:61118335 original size:28 final size:28
Alignment explanation
Indices: 61118275--61118369 Score: 165
Period size: 28 Copynumber: 3.4 Consensus size: 28
61118265 GTGTGTCCGT
* *
61118275 ACACTTAGTGCTATATAATC-AACTCGC
1 ACACTTAGTGCTACATGATCAAACTCGC
61118302 ACACTTAGTGCTACATGATCAAACTCGC
1 ACACTTAGTGCTACATGATCAAACTCGC
61118330 ACACTTAGTGCTACATGATCAAACTCGC
1 ACACTTAGTGCTACATGATCAAACTCGC
61118358 ACACTTAGTGCT
1 ACACTTAGTGCT
61118370 GTACAAGTTT
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 18 0.28
28 47 0.72
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
ACACTTAGTGCTACATGATCAAACTCGC
Found at i:61126304 original size:28 final size:27
Alignment explanation
Indices: 61126241--61126310 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
61126231 ATAGTGAGTC
*
61126241 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
61126268 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
61126296 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61126311 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:61128027 original size:21 final size:20
Alignment explanation
Indices: 61128003--61128044 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
61127993 AAACTTGTAT
*
61128003 ATCTATCAACAAGCATTCAAA
1 ATCTATCAACAAACA-TCAAA
*
61128024 ATCTATCATCAAACATCAAA
1 ATCTATCAACAAACATCAAA
61128044 A
1 A
61128045 CACACATGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.50, C:0.24, G:0.02, T:0.24
Consensus pattern (20 bp):
ATCTATCAACAAACATCAAA
Found at i:61130934 original size:71 final size:71
Alignment explanation
Indices: 61130818--61130959 Score: 284
Period size: 71 Copynumber: 2.0 Consensus size: 71
61130808 AATTGATAAA
61130818 ATGGCTTGTATATTTTAAGTGTGGCATGTATAGCAATATACTCACTTTGTGTAAATGATCATATG
1 ATGGCTTGTATATTTTAAGTGTGGCATGTATAGCAATATACTCACTTTGTGTAAATGATCATATG
61130883 ATATGG
66 ATATGG
61130889 ATGGCTTGTATATTTTAAGTGTGGCATGTATAGCAATATACTCACTTTGTGTAAATGATCATATG
1 ATGGCTTGTATATTTTAAGTGTGGCATGTATAGCAATATACTCACTTTGTGTAAATGATCATATG
61130954 ATATGG
66 ATATGG
61130960 TTATGGTTTG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (71 bp):
ATGGCTTGTATATTTTAAGTGTGGCATGTATAGCAATATACTCACTTTGTGTAAATGATCATATG
ATATGG
Found at i:61131677 original size:13 final size:13
Alignment explanation
Indices: 61131659--61131683 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61131649 CCAAGCACAT
61131659 GCCCATGTCCTTG
1 GCCCATGTCCTTG
61131672 GCCCATGTCCTT
1 GCCCATGTCCTT
61131684 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.20, T:0.32
Consensus pattern (13 bp):
GCCCATGTCCTTG
Found at i:61141412 original size:28 final size:27
Alignment explanation
Indices: 61141349--61141418 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
61141339 ATAGTGAGTC
*
61141349 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
61141376 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
61141404 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61141419 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:61148022 original size:40 final size:40
Alignment explanation
Indices: 61147963--61148170 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
61147953 CAATTGAATG
* * * *
61147963 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
61148003 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
61148043 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
61148083 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * **
61148123 GTATCCGAGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
61148163 ATATCCGG
1 ATATCCGG
61148171 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:61148101 original size:80 final size:80
Alignment explanation
Indices: 61147965--61148170 Score: 234
Period size: 80 Copynumber: 2.6 Consensus size: 80
61147955 ATTGAATGAT
* * ** * * *
61147965 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
61148030 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
61148045 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* **
61148110 TGTGCAAGTCGTTGT
66 TGTGCAAGTCGCTAC
* * *
61148125 ATCCGAGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
61148171 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 105 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:61152509 original size:28 final size:27
Alignment explanation
Indices: 61152446--61152515 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
61152436 ATAGTGAGTC
*
61152446 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
61152473 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
61152501 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61152516 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:61155883 original size:14 final size:14
Alignment explanation
Indices: 61155864--61155896 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
61155854 CGGCCATCTG
61155864 CCACATATGGTCTC
1 CCACATATGGTCTC
61155878 CCACATATGGTCTC
1 CCACATATGGTCTC
61155892 CCACA
1 CCACA
61155897 CGACTATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.39, G:0.12, T:0.24
Consensus pattern (14 bp):
CCACATATGGTCTC
Found at i:61158864 original size:48 final size:48
Alignment explanation
Indices: 61158647--61158872 Score: 299
Period size: 48 Copynumber: 4.7 Consensus size: 48
61158637 ATGTGTAACC
* * * ** * * *
61158647 GTGTAAGACCATATCTGGGATATGGAATCGATATTGTTATGTGATCCC
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
* * *
61158695 GTATAAGACCATGTTTGGGACATGGCATCGGCATTGTTTCGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
**
61158743 GTGTAAGACCATGTCTAAGACATGGCATCGGCATTGTTACGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
* * *
61158791 GTGTAAAACCATGTCTGGGACATGGCATCTGCATTGTTACCTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
*
61158839 GTGTAAGACCATGTCTGGGACATGGCATCTGCAT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAT
61158873 GAGGCATCGT
Statistics
Matches: 156, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 156 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACGTGAGCCA
Found at i:61164472 original size:15 final size:16
Alignment explanation
Indices: 61164452--61164481 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
61164442 CCTTGTATTG
61164452 GTACC-AATTGGGTGT
1 GTACCAAATTGGGTGT
61164467 GTACCAAATTGGGTG
1 GTACCAAATTGGGTG
61164482 GCAAAATGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.13, G:0.33, T:0.30
Consensus pattern (16 bp):
GTACCAAATTGGGTGT
Found at i:61170903 original size:13 final size:13
Alignment explanation
Indices: 61170885--61170909 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61170875 GTAATTTTAC
61170885 ACATTTTCCCATA
1 ACATTTTCCCATA
61170898 ACATTTTCCCAT
1 ACATTTTCCCAT
61170910 TTTTACAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.00, T:0.40
Consensus pattern (13 bp):
ACATTTTCCCATA
Found at i:61178621 original size:43 final size:42
Alignment explanation
Indices: 61178560--61178673 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
61178550 GGAATTTAGA
*
61178560 AATCCGAGCTTGTTGAGTGGTCCGAGTTCGTGATATATGTGAG
1 AATCCGAACTTGTTGAGTGGTCCGAGTTCGTGATATATGTG-G
* * * *
61178603 AATCCGAACTTGTTGAGTGATCCAAGTTTGTGATCTATGTGG
1 AATCCGAACTTGTTGAGTGGTCCGAGTTCGTGATATATGTGG
* * *
61178645 CATCC-AAGCTAGTTGAGAGGTCCGAGTTC
1 AATCCGAA-CTTGTTGAGTGGTCCGAGTTC
61178674 ATTATGGATA
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 2 0.03
42 21 0.36
43 36 0.61
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.32
Consensus pattern (42 bp):
AATCCGAACTTGTTGAGTGGTCCGAGTTCGTGATATATGTGG
Found at i:61182003 original size:58 final size:59
Alignment explanation
Indices: 61181938--61182056 Score: 222
Period size: 58 Copynumber: 2.0 Consensus size: 59
61181928 GAGTGATTTC
61181938 GGGCTCCCCTGTCTCAAATTTGGAAAATCACTAAAAATTGT-AAAAAAAAATGATTATG
1 GGGCTCCCCTGTCTCAAATTTGGAAAATCACTAAAAATTGTAAAAAAAAAATGATTATG
*
61181996 GGGCTCCCTTGTCTCAAATTTGGAAAATCACTAAAAATTGTAAAAAAAAAATGATTATG
1 GGGCTCCCCTGTCTCAAATTTGGAAAATCACTAAAAATTGTAAAAAAAAAATGATTATG
61182055 GG
1 GG
61182057 CTAGGATTTA
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
58 40 0.68
59 19 0.32
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (59 bp):
GGGCTCCCCTGTCTCAAATTTGGAAAATCACTAAAAATTGTAAAAAAAAAATGATTATG
Found at i:61194173 original size:28 final size:28
Alignment explanation
Indices: 61194141--61194238 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
61194131 CAATAAGCCT
*
61194141 GCACACTTAGTGCTTAATAGTCGAACTC
1 GCACACTTAGTGCTTAATAATCGAACTC
* *
61194169 GCACACTTAGTGC-TATATAATCAAACTT
1 GCACACTTAGTGCTTA-ATAATCGAACTC
* *
61194197 GCACACTTAGTGCTGT-ATAATTTGAACCC
1 GCACACTTAGTGCT-TAATAA-TCGAACTC
61194226 GCACACTTAGTGC
1 GCACACTTAGTGC
61194239 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
27 2 0.03
28 39 0.66
29 17 0.29
30 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (28 bp):
GCACACTTAGTGCTTAATAATCGAACTC
Done.