Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 200 of 433
Found at i:63162870 original size:27 final size:27
Alignment explanation
Indices: 63162840--63163071 Score: 225
Period size: 27 Copynumber: 8.7 Consensus size: 27
63162830 CCCTAATTGA
* * *
63162840 TAAAATGACTATTTTACCCTTTTATAG
1 TAAAATGACTATTTTGCCCTTATATGG
* * * *
63162867 TAAAAGGACTGTTTTGCCCTAAT-TGA
1 TAAAATGACTATTTTGCCCTTATATGG
* * *
63162893 TAAAATGATTGTTTTGCCTTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
*
63162920 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
* * *
63162947 TAAAATGATTATTTTGCCATTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
* * * *
63162974 TAAAATGTCTGTTTTTCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
63163001 TAAAA-GACTATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
* * * * *
63163027 TAAAATAATTGTTTCGCCCTTATACGG
1 TAAAATGACTATTTTGCCCTTATATGG
* *
63163054 TAAATTGACTGTTTTGCC
1 TAAAATGACTATTTTGCC
63163072 ACTATGCGAT
Statistics
Matches: 167, Mismatches: 36, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 42 0.25
27 125 0.75
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATATGG
Found at i:63163010 original size:80 final size:80
Alignment explanation
Indices: 63162840--63163071 Score: 261
Period size: 80 Copynumber: 2.9 Consensus size: 80
63162830 CCCTAATTGA
* * * * * * *
63162840 TAAAATGACTATTTTACCCTTTTATAGTAAAAGGACTGTTTTGCCCTAATTGATAAAATGAT-TG
1 TAAAATGACTATTTTGCCCTTATATGGTAAAATGATTGTTTTGCCCTTATTGGTAAAATG-TCTG
*
63162904 TTTTGCCTTTATATGG
65 TTTTGCCCTTATATGG
* * *
63162920 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTATTTTGCCATTATGTGGTAAAATGTCTG
1 TAAAATGACTATTTTGCCCTTATATGGTAAAATGATTGTTTTGCCCTTAT-TGGTAAAATGTCTG
* *
63162985 TTTTTCCCTTATGTGG
65 TTTTGCCCTTATATGG
* * * * *
63163001 TAAAA-GACTATTTTGCCCTTATATGGTAAAATAATTGTTTCGCCCTTATACGGTAAATTGACTG
1 TAAAATGACTATTTTGCCCTTATATGGTAAAATGATTGTTTTGCCCTTAT-TGGTAAAATGTCTG
63163065 TTTTGCC
65 TTTTGCC
63163072 ACTATGCGAT
Statistics
Matches: 127, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
80 98 0.77
81 29 0.23
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (80 bp):
TAAAATGACTATTTTGCCCTTATATGGTAAAATGATTGTTTTGCCCTTATTGGTAAAATGTCTGT
TTTGCCCTTATATGG
Found at i:63163047 original size:53 final size:54
Alignment explanation
Indices: 63162840--63163071 Score: 252
Period size: 53 Copynumber: 4.3 Consensus size: 54
63162830 CCCTAATTGA
* * * * * *
63162840 TAAAATGACTATTTTACCCTTTTATAGTAAAAGGACTGTTTTGCCCTAAT-TGA
1 TAAAATGACTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTTATGTGG
* * * *
63162893 TAAAATGATTGTTTTGCCTTTATATGGTAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTTATGTGG
* * * * *
63162947 TAAAATGATTATTTTGCCATTATGTGGTAAAATGTCTGTTTTTCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTTATGTGG
* * * **
63163001 TAAAA-GACTATTTTGCCCTTATATGGTAAAATAATTGTTTCGCCCTTATACGG
1 TAAAATGACTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTTATGTGG
* *
63163054 TAAATTGACTGTTTTGCC
1 TAAAATGACTATTTTGCC
63163072 ACTATGCGAT
Statistics
Matches: 149, Mismatches: 28, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
53 83 0.56
54 66 0.44
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (54 bp):
TAAAATGACTATTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTTATGTGG
Found at i:63167590 original size:30 final size:30
Alignment explanation
Indices: 63167495--63167591 Score: 74
Period size: 30 Copynumber: 3.2 Consensus size: 30
63167485 AGCTCACTCC
* *
63167495 TAGCTC-ACTTTCAACTCAC-AAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAA-CTAAAGCT
* * * **
63167525 TAGCTCAACTTTAGCTTA-GGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAACTAAAG-CT
*
63167555 CAGCTCAACTTTAGCTCACGAACTAAAGCT
1 TAGCTCAACTTTAGCTCACGAACTAAAGCT
63167585 TAGCTCA
1 TAGCTCA
63167592 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 14, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
29 2 0.04
30 37 0.76
31 10 0.20
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAACTAAAGCT
Found at i:63170148 original size:21 final size:21
Alignment explanation
Indices: 63170114--63170181 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
63170104 ACATTCTTGT
63170114 AAAGAGAAAA-CAAATAAAAGA
1 AAAGA-AAAAGCAAATAAAAGA
*
63170135 AAAGAAAAAGCAAA-AGAAGAA
1 AAAGAAAAAGCAAATAAAAG-A
*
63170156 AAAGAAAATG-AAATAAAAAGA
1 AAAGAAAAAGCAAAT-AAAAGA
63170177 AAAGA
1 AAAGA
63170182 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 11 0.28
21 25 0.62
22 4 0.10
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.04
Consensus pattern (21 bp):
AAAGAAAAAGCAAATAAAAGA
Found at i:63170156 original size:15 final size:14
Alignment explanation
Indices: 63170136--63170181 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 14
63170126 AATAAAAGAA
63170136 AAGAAAAAGCAAAAG
1 AAGAAAAAG-AAAAG
63170151 AAGAAAAAGAAAATG
1 AAGAAAAAGAAAA-G
*
63170166 AAATAAAAAGAAAAG
1 -AAGAAAAAGAAAAG
63170181 A
1 A
63170182 GAGGCAAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 5 0.18
15 11 0.39
16 12 0.43
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.04
Consensus pattern (14 bp):
AAGAAAAAGAAAAG
Found at i:63170261 original size:11 final size:12
Alignment explanation
Indices: 63170229--63170259 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
63170219 TTGAGAGAAC
63170229 TTGAAAAAGCCT
1 TTGAAAAAGCCT
63170241 TTGAAAAAGCCT
1 TTGAAAAAGCCT
63170253 TTGAAAA
1 TTGAAAA
63170260 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:63176228 original size:13 final size:13
Alignment explanation
Indices: 63176210--63176234 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63176200 ACCCTTATTT
63176210 TCGCACGGCCGTC
1 TCGCACGGCCGTC
63176223 TCGCACGGCCGT
1 TCGCACGGCCGT
63176235 GTTTCCGTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.44, G:0.32, T:0.16
Consensus pattern (13 bp):
TCGCACGGCCGTC
Found at i:63191309 original size:40 final size:40
Alignment explanation
Indices: 63191265--63191453 Score: 360
Period size: 40 Copynumber: 4.7 Consensus size: 40
63191255 GCTACTTGCT
63191265 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63191305 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63191345 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63191385 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63191425 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
63191454 CATCCGAATA
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63191364 original size:80 final size:80
Alignment explanation
Indices: 63191232--63191453 Score: 385
Period size: 80 Copynumber: 2.8 Consensus size: 80
63191222 AAACCAAGTA
* * * *
63191232 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
63191295 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
63191311 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
63191376 TAACTCGCACAAATG
66 TAACTCGCACAAATG
63191391 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63191454 CATCCGAATA
Statistics
Matches: 137, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
79 13 0.09
80 124 0.91
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:63196786 original size:40 final size:40
Alignment explanation
Indices: 63196741--63196907 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
63196731 CGGAATACAA
63196741 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
63196781 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
63196821 CCGGATGTAGCCGCTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
*** * ** * *
63196860 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
63196900 CCGGATAT
1 CCGGATAT
63196908 CATTCAATTC
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 32 0.30
40 74 0.70
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:63196890 original size:79 final size:80
Alignment explanation
Indices: 63196757--63196905 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 80
63196747 ATAACCACGT
* * *
63196757 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACGAATGCCTTCGGGTCTTAACCCGGATAGAACGACTCGCACAAATGCCTTCGGGACTTAGCC
63196822 CGGATGTAGCCGCTA
66 CGGATGTAGCCGCTA
* *** * *
63196837 GCAC-AATGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATAAATGTCTTCGGGACTTAGC
1 GCACGAATGCCTTCGGGTCTTAACCCGGATAGAACGACTC-GCACAAATGCCTTCGGGACTTAGC
63196900 CCGGAT
65 CCGGAT
63196906 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
78 1 0.02
79 54 0.92
80 4 0.07
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGGTCTTAACCCGGATAGAACGACTCGCACAAATGCCTTCGGGACTTAGCC
CGGATGTAGCCGCTA
Found at i:63200564 original size:40 final size:40
Alignment explanation
Indices: 63200519--63200686 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
63200509 CGGAATATAA
63200519 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63200559 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
63200599 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
63200639 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63200679 CCGGATAT
1 CCGGATAT
63200687 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63203976 original size:40 final size:39
Alignment explanation
Indices: 63203811--63203994 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
63203801 AAATTGAATG
* * *
63203811 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
63203851 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
63203891 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
63203931 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
63203970 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
63203995 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:63204019 original size:80 final size:81
Alignment explanation
Indices: 63203851--63204039 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
63203841 GCTGGAAATT
* * * *
63203851 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
63203916 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
63203932 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
63203995 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
63204011 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
63204040 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:63205593 original size:40 final size:40
Alignment explanation
Indices: 63205534--63205675 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
63205524 AAATTGAATG
* * *
63205534 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
63205574 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
63205614 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
63205654 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
63205676 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:63205676 original size:40 final size:39
Alignment explanation
Indices: 63205573--63205701 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
63205563 TGCTGGAAAT
* * *
63205573 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
63205613 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
63205653 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
63205693 TATATCCGG
1 TATATCCGG
63205702 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:63210551 original size:30 final size:30
Alignment explanation
Indices: 63210515--63210615 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
63210505 GACAAGATTG
* * *
63210515 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
63210545 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
63210573 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
63210602 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63210616 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:63210627 original size:29 final size:28
Alignment explanation
Indices: 63210544--63210619 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
63210534 AAAATTGTAC
* *
63210544 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
63210572 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
63210601 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
63210620 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:63218421 original size:30 final size:30
Alignment explanation
Indices: 63218385--63218485 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
63218375 GACAAGATTG
* * *
63218385 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
63218415 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
63218443 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
63218472 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63218486 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:63218497 original size:29 final size:28
Alignment explanation
Indices: 63218414--63218489 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
63218404 AAAATTGTAC
* *
63218414 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
63218442 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
63218471 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
63218490 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:63223730 original size:40 final size:40
Alignment explanation
Indices: 63223671--63223812 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
63223661 AAATTGAATG
* * *
63223671 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
63223711 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
63223751 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
63223791 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
63223813 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:63223813 original size:40 final size:39
Alignment explanation
Indices: 63223710--63223838 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
63223700 TGCTGGAAAT
* * *
63223710 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
63223750 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
63223790 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
63223830 TATATCCGG
1 TATATCCGG
63223839 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:63225618 original size:30 final size:30
Alignment explanation
Indices: 63225577--63225634 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
63225567 AAATTCACAT
* *
63225577 CTTTGGTAAAATGAACATTTTGCCCCTAGA
1 CTTTGGCAAAATGAACATTTTACCCCTAGA
*
63225607 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGAACATTTTACCCCTA
63225635 TGCTCGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGAACATTTTACCCCTAGA
Found at i:63228044 original size:25 final size:28
Alignment explanation
Indices: 63228007--63228058 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
63227997 TTTCATAAAC
63228007 ATAAATTTGCACATA-T-CCACTTTATA
1 ATAAATTTGCACATATTACCACTTTATA
*
63228033 ATAACTTT-CACATATTACCACTTTAT
1 ATAAATTTGCACATATTACCACTTTAT
63228059 CGATTTTCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 6 0.26
26 8 0.35
27 9 0.39
ACGTcount: A:0.37, C:0.21, G:0.02, T:0.40
Consensus pattern (28 bp):
ATAAATTTGCACATATTACCACTTTATA
Found at i:63228268 original size:50 final size:48
Alignment explanation
Indices: 63228158--63228337 Score: 200
Period size: 50 Copynumber: 3.6 Consensus size: 48
63228148 TTGATATGCA
* * * *
63228158 TAGTAGCCTGCACATAATACTACACATGTGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAATACTACACACGTGACCATC-ATCTGATACACG
*
63228207 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCATCATCTGATACACG
1 TAGTAGCCTGCACTTAATACTACACACGTGA-C-CATCATCTGATACACG
* * * *
63228257 TAGTAGCCTGCACTTAATACTACACATGTGATCGAAGTCAT-TGAGTACGCA
1 TAGTAGCCTGCACTTAATACTACACACGTGA-C-CA-TCATCTGA-TACACG
*
63228308 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAATACTACACACGTG
63228338 TATTCACAAT
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
49 28 0.25
50 46 0.41
51 39 0.35
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAATACTACACACGTGACCATCATCTGATACACG
Found at i:63231783 original size:37 final size:37
Alignment explanation
Indices: 63231733--63231810 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
63231723 GTGGGACCAT
63231733 TCTATACAGTGCAATCGAGATTGGCGTCGTACCAAGA
1 TCTATACAGTGCAATCGAGATTGGCGTCGTACCAAGA
* *
63231770 TCTATACAGTGCAATCGAGATTGGTGTCGTACCAGGA
1 TCTATACAGTGCAATCGAGATTGGCGTCGTACCAAGA
63231807 TCTA
1 TCTA
63231811 ACTCGATACC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (37 bp):
TCTATACAGTGCAATCGAGATTGGCGTCGTACCAAGA
Found at i:63233981 original size:20 final size:20
Alignment explanation
Indices: 63233952--63233996 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
63233942 TATGTCCCTT
63233952 AAAA-AGGCTCACGAGGCCC
1 AAAACAGGCTCACGAGGCCC
63233971 AAAACAGGCTCACGAGGCCC
1 AAAACAGGCTCACGAGGCCC
63233991 AAAACA
1 AAAACA
63233997 TATGTTAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.42, C:0.31, G:0.22, T:0.04
Consensus pattern (20 bp):
AAAACAGGCTCACGAGGCCC
Found at i:63234231 original size:55 final size:55
Alignment explanation
Indices: 63234147--63234272 Score: 166
Period size: 55 Copynumber: 2.3 Consensus size: 55
63234137 AGCCCGAGTG
*
63234147 CAACACTGACTTTAAAACACAGCCATGACACACGCTC-GTGAGGCCTACCCGTGTA
1 CAACACTGACTTTAAAACACAGCCATGACACACGC-CAATGAGGCCTACCCGTGTA
* * * **
63234202 CAACACTGACTTTAAAACA-TGACCATGACACATGCCAATGTGGCCTGGCCGTGTA
1 CAACACTGACTTTAAAACACAG-CCATGACACACGCCAATGAGGCCTACCCGTGTA
63234257 CAACACTGACTTTAAA
1 CAACACTGACTTTAAA
63234273 TTTTAAGTGT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
54 2 0.03
55 61 0.97
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (55 bp):
CAACACTGACTTTAAAACACAGCCATGACACACGCCAATGAGGCCTACCCGTGTA
Found at i:63235559 original size:27 final size:27
Alignment explanation
Indices: 63235528--63235622 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 27
63235518 TTAGTTTACC
*
63235528 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGACTTGTA
* * * *
63235555 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGACTTGTA
* * * *
63235582 AAATTACCCAAATATCCTTGAGTTGTA
1 AAATTACCAAAATACCCTCGACTTGTA
*
63235609 AAATTACCGAAATA
1 AAATTACCAAAATA
63235623 AGATAGAATT
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGACTTGTA
Found at i:63235655 original size:27 final size:26
Alignment explanation
Indices: 63235627--63235742 Score: 160
Period size: 27 Copynumber: 4.3 Consensus size: 26
63235617 GAAATAAGAT
*
63235627 AGAATTACCATTTTACTCTTGATTTAT
1 AGAATTACCATTTTAC-CTTGATTTAC
* *
63235654 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCATTTTA-CCTTGATTTAC
63235681 AGAATTACCATTTTACCTTCGATTTAC
1 AGAATTACCATTTTACCTT-GATTTAC
63235708 AGAATTACCATTTTACCTTTGATTTAC
1 AGAATTACCATTTTACC-TTGATTTAC
*
63235735 AAAATTAC
1 AGAATTAC
63235743 TGAAATACCC
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
26 3 0.04
27 74 0.93
28 3 0.04
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (26 bp):
AGAATTACCATTTTACCTTGATTTAC
Found at i:63235775 original size:27 final size:27
Alignment explanation
Indices: 63235721--63235860 Score: 145
Period size: 27 Copynumber: 5.2 Consensus size: 27
63235711 ATTACCATTT
* * **
63235721 TACCTTTGATTTACAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * *
63235748 TACCCTTGGTTTACAAAATTATCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* **
63235775 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
63235802 TACCCCTGATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * *
63235829 TACTCTTGATTTGTGAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
63235856 TACCC
1 TACCC
63235861 CTGTAAGGTA
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACCAAAA
Found at i:63235784 original size:81 final size:81
Alignment explanation
Indices: 63235627--63235784 Score: 174
Period size: 81 Copynumber: 2.0 Consensus size: 81
63235617 GAAATAAGAT
* * *** * *
63235627 AGAATTACCATTTTACTCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCAT
1 AGAATTACCATTTTACTCTTGATTTACAAAATTACCGAAATACCCTCGATTTACAAAATTACCAA
** *
63235692 TTTACCTTCGATTTAC
66 AATACCCTCGATTTAC
* * * *
63235708 AGAATTACCATTTTAC-CTTTGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTATCA
1 AGAATTACCATTTTACTC-TTGATTTACAAAATTACCGAAATACCCTCGATTTACAAAATTACCA
63235772 AAATACCCTCGAT
65 AAATACCCTCGAT
63235785 CAATAAAATT
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
80 1 0.02
81 61 0.98
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (81 bp):
AGAATTACCATTTTACTCTTGATTTACAAAATTACCGAAATACCCTCGATTTACAAAATTACCAA
AATACCCTCGATTTAC
Found at i:63235903 original size:54 final size:54
Alignment explanation
Indices: 63235844--63235960 Score: 144
Period size: 54 Copynumber: 2.2 Consensus size: 54
63235834 TTGATTTGTG
63235844 AAATTACCAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTA
1 AAATTACCAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTA
* * * * * * * * * *
63235898 GAATTACTAAAATACCCTTGTAGGGTGGAGTTATCGAGATACCCTTGTGGGGTA
1 AAATTACCAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTA
63235952 AAATTACCA
1 AAATTACCA
63235961 TTTTGCCCTA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTA
Found at i:63235920 original size:27 final size:27
Alignment explanation
Indices: 63235845--63235960 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
63235835 TGATTTGTGA
*
63235845 AATTACCAAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
63235872 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
63235899 AATTACTAAAATACCCTTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * * * *
63235926 AGTTATCGAGATACCCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
63235953 AATTACCA
1 AATTACCA
63235961 TTTTGCCCTA
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:63236392 original size:6 final size:6
Alignment explanation
Indices: 63236361--63236460 Score: 89
Period size: 6 Copynumber: 16.3 Consensus size: 6
63236351 TTGCATTCCC
* *
63236361 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
63236410 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ACTCTG ATTCT- AGTTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
63236459 AT
1 AT
63236461 AATGTTTCTT
Statistics
Matches: 76, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
5 4 0.05
6 64 0.84
7 6 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:63236396 original size:31 final size:31
Alignment explanation
Indices: 63236361--63236440 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
63236351 TTGCATTCCC
* * *
63236361 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
63236392 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
63236423 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
63236441 ACTCTGATTC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:63237935 original size:59 final size:57
Alignment explanation
Indices: 63237834--63237955 Score: 149
Period size: 59 Copynumber: 2.1 Consensus size: 57
63237824 TATGGAAAAA
63237834 GAAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAG
1 GAAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAG
* ***
63237891 GAAAGAAAAGAAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAG
1 GAAAAAAAAGAAAAAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAG
*
63237950 GGAAAA
1 GAAAAA
63237956 GGGGGAGGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
57 17 0.31
58 2 0.04
59 33 0.60
60 3 0.05
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.25
Consensus pattern (57 bp):
GAAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAG
Found at i:63238527 original size:40 final size:40
Alignment explanation
Indices: 63238461--63238627 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
63238451 AAATTGAATG
* * *
63238461 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
63238500 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
63238540 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
63238580 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
63238620 ATATCCGG
1 ATATCCGG
63238628 ATATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63245267 original size:59 final size:60
Alignment explanation
Indices: 63245164--63245282 Score: 145
Period size: 59 Copynumber: 2.0 Consensus size: 60
63245154 GAGTATGGAA
63245164 AAAGAAAAAAAAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
* ** ***
63245224 AAAG-AAAAGAAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAAAAAAAAAAAAAATGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
63245283 GAAAAGGGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
58 2 0.04
59 42 0.82
60 7 0.14
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (60 bp):
AAAGAAAAAAAAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:63245858 original size:40 final size:40
Alignment explanation
Indices: 63245791--63245958 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
63245781 AGAAATTGAA
* * *
63245791 TATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
* * ***
63245830 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
* *
63245870 TATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAAT
* * ** *
63245910 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
63245950 TATATCCGG
1 TATATCCGG
63245959 ATATATTCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 17 0.16
40 85 0.82
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
Found at i:63247522 original size:48 final size:47
Alignment explanation
Indices: 63247322--63247567 Score: 180
Period size: 47 Copynumber: 5.2 Consensus size: 47
63247312 GGGTGTTACA
* *
63247322 CTTACACTGGATATCATCATCGAGGCTGATGACATTTCCCAGACATGGT
1 CTTACACTGGCTATCATCATCGAGGCTGATG-CATGTCCCAGACAT-GT
* * * * * *
63247371 CTTATACTAGG-TCTCGTTTATAG-GTGCTAATGCATGTCCCAGACATGT
1 CTTACACT-GGCTATC-ATCATCGAG-GCTGATGCATGTCCCAGACATGT
* * * * * * * *
63247419 CTTACACTAGC-ACCA-C-TCTAAGCCGATGCGTGTCCCAGAGACGT
1 CTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCCAGACATGT
* * * *
63247463 CTCACACTGGCTATTATCGTCGAGGCTAATGCATGTCCCAGACATGGT
1 CTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCCAGACAT-GT
* * * *
63247511 CTTACACTGGCTATCAT-ATTGTGGCCGATGCGTGTCCCAGACATGT
1 CTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCCAGACATGT
63247557 CTTACACTGGC
1 CTTACACTGGC
63247568 ACACAATTAA
Statistics
Matches: 148, Mismatches: 40, Indels: 21
0.71 0.19 0.10
Matches are distributed among these distances:
44 28 0.19
45 2 0.01
46 14 0.09
47 42 0.28
48 26 0.18
49 24 0.16
50 12 0.08
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (47 bp):
CTTACACTGGCTATCATCATCGAGGCTGATGCATGTCCCAGACATGT
Found at i:63247564 original size:94 final size:91
Alignment explanation
Indices: 63247396--63247567 Score: 229
Period size: 94 Copynumber: 1.9 Consensus size: 91
63247386 GTTTATAGGT
*
63247396 GCTAATGCATGTCCCAGACATGTCTTACACTAGCACCACTCTAAGCCGATGCGTGTCCCAGAGAC
1 GCTAATGCATGTCCCAGACATGTCTTACACTAGCACCACTCTAAGCCGATGCGTGTCCCAGACAC
63247461 GTCTCACACTGGCTATTATCGTCGAG
66 GTCTCACACTGGCTATTATCGTCGAG
* * * **
63247487 GCTAATGCATGTCCCAGACATGGTCTTACACTGGCTATCA-TATTGTGGCCGATGCGTGTCCCAG
1 GCTAATGCATGTCCCAGACAT-GTCTTACACTAGC-ACCACT-CT-AAGCCGATGCGTGTCCCAG
* *
63247551 ACATGTCTTACACTGGC
62 ACACGTCTCACACTGGC
63247568 ACACAATTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
91 21 0.30
92 13 0.19
93 4 0.06
94 31 0.45
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (91 bp):
GCTAATGCATGTCCCAGACATGTCTTACACTAGCACCACTCTAAGCCGATGCGTGTCCCAGACAC
GTCTCACACTGGCTATTATCGTCGAG
Found at i:63247949 original size:30 final size:30
Alignment explanation
Indices: 63247908--63247964 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
63247898 AAATTCACAT
* * *
63247908 CTTTGGTAAAATGACCATTTTGCCCCTACA
1 CTTTGGCAAAATAACCATTTTACCCCTACA
63247938 CTTTGGCAAAATAACCATTTTACCCCT
1 CTTTGGCAAAATAACCATTTTACCCCT
63247965 TTGCTCGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATAACCATTTTACCCCTACA
Found at i:63252285 original size:40 final size:40
Alignment explanation
Indices: 63252230--63252386 Score: 226
Period size: 40 Copynumber: 3.9 Consensus size: 40
63252220 ATTCGGATGA
63252230 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
63252270 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* * * *
63252310 CAAATCCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* * * *
63252350 T-ATAACCGGGCTATGTCCCGAACGCATTTGAGCGAGT
1 TAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63252387 AGCTATATCC
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:63254684 original size:29 final size:29
Alignment explanation
Indices: 63254642--63254701 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
63254632 ATTTAATTAA
63254642 GTTAGTTAACTCAGTTTCAGCTCATAAAG
1 GTTAGTTAACTCAGTTTCAGCTCATAAAG
63254671 GTTAGTTAACTCAGTTTCAGCTCATAAAG
1 GTTAGTTAACTCAGTTTCAGCTCATAAAG
63254700 GT
1 GT
63254702 GTTTTATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (29 bp):
GTTAGTTAACTCAGTTTCAGCTCATAAAG
Found at i:63256965 original size:42 final size:40
Alignment explanation
Indices: 63256860--63257008 Score: 129
Period size: 43 Copynumber: 3.5 Consensus size: 40
63256850 CTGAGACATT
* *
63256860 GTGTAAGACCGTGTCTGGGACACATGCATCG-ATTGAGATTTAC
1 GTGTAAGACCATGTCTGGGACAC-GGCATCGTATT--GATTT-C
*
63256903 GTATAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACA-CGGCATCGTAT-TGATTTC
* * *
63256945 GTGTAAGACCTTGTCTGGGACAGAGGCATCGATATTGAATTAC
1 GTGTAAGACCATGTCTGGGACA-CGGCATCG-TATTG-ATTTC
* * *
63256988 ATGTAAGACCACGTCCGGGAC
1 GTGTAAGACCATGTCTGGGAC
63257009 GTCGGTATTG
Statistics
Matches: 89, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
42 30 0.34
43 55 0.62
44 3 0.03
45 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
GTGTAAGACCATGTCTGGGACACGGCATCGTATTGATTTC
Found at i:63262418 original size:43 final size:43
Alignment explanation
Indices: 63262328--63262467 Score: 126
Period size: 43 Copynumber: 3.3 Consensus size: 43
63262318 TGTGATTATG
* *
63262328 TGTAAGACCATGTCTAGGACATTGGCA-TCATATTGCGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATTCATATT-CGATTACA
* ** *
63262371 TGTAAGACCATGTCTGGGACACTGGCATTGTTATAT-GATTTCA
1 TGTAAGACCATGTCTGGGACATTGGCATTCATAT-TCGATTACA
* * *
63262414 TGTAAGACCATCTTTGGGACATTGGCA-TCGATATGT-GATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATTC-ATAT-TCGATTACA
*
63262457 TGTAAGGCCAT
1 TGTAAGACCAT
63262468 ATCTAAGATA
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
42 1 0.01
43 73 0.92
44 4 0.05
45 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATTCATATTCGATTACA
Found at i:63264376 original size:27 final size:27
Alignment explanation
Indices: 63264346--63264455 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
63264336 GGTATTACAA
63264346 TCATTTTACCCTATAGAGGTATTTCGG
1 TCATTTTACCCTATAGAGGTATTTCGG
* * *
63264373 TCATTCTACACTATAGGGGTATTTC--
1 TCATTTTACCCTATAGAGGTATTTCGG
*
63264398 TACAATTTTACCCTAT-GAGAGTATTTCGA
1 T-C-ATTTTACCCTATAGAG-GTATTTCGG
*
63264427 TCATTTTACCCTATTAGA-TTATTTCGG
1 TCATTTTACCCTA-TAGAGGTATTTCGG
63264454 TC
1 TC
63264456 CTTTGATCGC
Statistics
Matches: 68, Mismatches: 8, Indels: 14
0.76 0.09 0.16
Matches are distributed among these distances:
25 1 0.01
26 3 0.04
27 59 0.87
28 2 0.03
29 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTATAGAGGTATTTCGG
Found at i:63264394 original size:54 final size:54
Alignment explanation
Indices: 63264335--63264440 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
63264325 TTACCTTACT
*
63264335 GGGTATTACAATC-ATTTTACCCTAT-AGAGGTATTTCGGTCATTCTACACTATAG
1 GGGTATTACAA-CAATTTTACCCTATGAGA-GTATTTCGATCATTCTACACTATAG
* * * *
63264389 GGGTATTTCTACAATTTTACCCTATGAGAGTATTTCGATCATTTTACCCTAT
1 GGGTATTACAACAATTTTACCCTATGAGAGTATTTCGATCATTCTACACTAT
63264441 TAGATTATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
53 1 0.02
54 41 0.91
55 3 0.07
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (54 bp):
GGGTATTACAACAATTTTACCCTATGAGAGTATTTCGATCATTCTACACTATAG
Found at i:63265989 original size:27 final size:28
Alignment explanation
Indices: 63265959--63266028 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
63265949 ATAGTGAGTC
63265959 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
63265986 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
63266014 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63266029 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63267873 original size:27 final size:27
Alignment explanation
Indices: 63267698--63267867 Score: 241
Period size: 27 Copynumber: 6.3 Consensus size: 27
63267688 TTTTGGGCTG
*
63267698 TCACATAAGGGCAAAATCTTCATTTTA
1 TCACATAAGGGCAAAATCGTCATTTTA
63267725 TCACATAAGGGCAAAATCGTCATTTTA
1 TCACATAAGGGCAAAATCGTCATTTTA
* *
63267752 TCACATAAGGGCAAAATCATTATTTTA
1 TCACATAAGGGCAAAATCGTCATTTTA
* *
63267779 TCACATAAGGGAAAAATCGTCATTTCA
1 TCACATAAGGGCAAAATCGTCATTTTA
* * * *
63267806 TCACATTAGGGTAAAATTGACATTTTA
1 TCACATAAGGGCAAAATCGTCATTTTA
* *
63267833 TCACATAAGGGTAAAATCGTCTTTTTA
1 TCACATAAGGGCAAAATCGTCATTTTA
63267860 TCACATAA
1 TCACATAA
63267868 AGGTAATATT
Statistics
Matches: 127, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.32
Consensus pattern (27 bp):
TCACATAAGGGCAAAATCGTCATTTTA
Found at i:63267885 original size:27 final size:27
Alignment explanation
Indices: 63267698--63267898 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
63267688 TTTTGGGCTG
* *
63267698 TCACATAAGGGCAAAATCTTCATTTTA
1 TCACATAAGGGTAAAATCGTCATTTTA
*
63267725 TCACATAAGGGCAAAATCGTCATTTTA
1 TCACATAAGGGTAAAATCGTCATTTTA
* * *
63267752 TCACATAAGGGCAAAATCATTATTTTA
1 TCACATAAGGGTAAAATCGTCATTTTA
* *
63267779 TCACATAAGGGAAAAATCGTCATTTCA
1 TCACATAAGGGTAAAATCGTCATTTTA
* * *
63267806 TCACATTAGGGTAAAATTGACATTTTA
1 TCACATAAGGGTAAAATCGTCATTTTA
*
63267833 TCACATAAGGGTAAAATCGTCTTTTTA
1 TCACATAAGGGTAAAATCGTCATTTTA
* * * *
63267860 TCACATAAAGGTAATATTGCCATTTTA
1 TCACATAAGGGTAAAATCGTCATTTTA
* *
63267887 TCATATTAGGGT
1 TCACATAAGGGT
63267899 TCAGGTACGC
Statistics
Matches: 150, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 150 1.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (27 bp):
TCACATAAGGGTAAAATCGTCATTTTA
Found at i:63271436 original size:495 final size:494
Alignment explanation
Indices: 63270507--63271494 Score: 1647
Period size: 495 Copynumber: 2.0 Consensus size: 494
63270497 ATGTTTATTT
63270507 AGCCTCTTCATGTGATCTAGAAAATAATTTTAAAACTTGCGTCACTATCAAAAAGTATTTACTTT
1 AGCCTCTTCATGTGATCTAGAAAATAATTTTAAAACTTGCGTCACTATCAAAAAGTATTTACTTT
** * *
63270572 AAAATGTTATTAATTCCAAAATCTCGTTTATCGCGGAAGCTTTGAAATGGTTTTGCGTATTCATG
66 AAAACATTATTAATTCCAAAATCTCGTTTACCGCGGAAGCTTTGAAATGGTTTTGCATATTCATG
*
63270637 GTATTTTAGTAAATCATGCACATCTTTTGAAAACCCGCATCCTACCACTAGAAAGTATAAATCAT
131 GTATTTTAGAAAATCATGCACATCTTTTGAAAACCCGCATCCTACCACTAGAAAGTATAAATCAT
* * *
63270702 AATAAAATAATAAAAGCCCAAATTAATGAATAAAACTTAAATAGGCCTTTCAGATATAAATACCC
196 AATAAAATAATAAAAGCCCAAATTAATGAATAAAACTTAAAAAGGCCTTTCACATAAAAATACCC
* *
63270767 ATATAAAATTACTTATAAGTTAAAAGATACATTCAGAAGCGTAAGCTGTTGTGTGTTCACCTCCG
261 ATATAAAACTACTTATAAGTTAAAAGATACATTCAAAAGCGTAAGCTGTTGTGTGTTCACCTCCG
* * * * *
63270832 AGTCCCTCGCAGCACCAATCTGCCAAAAGGATTACCTGTACAGTTAAAACAGTTAGGTGAGTTTT
326 AGTCCCTCGCAACACCAATCCGCCAAAAAGATTACATGTACAGTTAAAACAGTTAGGCGAGTTTT
* *
63270897 CAAAAACTCAGTGTGTAATCCTAGCAATAAACAAACAGTGAACAACACAGTCTGGGCCTAAGCCC
391 CAAAAACTCAGTGTGTAATCCCAACAATAAACAAACAGTGAACAACACAGTCTGGGCCTAAGCCC
*
63270962 ATATCAGTAACAGTTCAATATCAGTTAGGGCCTTGGCCA
456 ATATCAGTAACAATTCAATATCAGTTAGGGCCTTGGCCA
*
63271001 AGCCTCTTCATGTGATCTAGAATATAATTTTAAAACTTGCGTCACTATCAAAAAGTATTTACTTT
1 AGCCTCTTCATGTGATCTAGAAAATAATTTTAAAACTTGCGTCACTATCAAAAAGTATTTACTTT
* *
63271066 AAAACATTATTAATTCCAAAATCTCGTTTCCCGCGGAAGCTTCTGAAATGGTTTTGCATATTCGT
66 AAAACATTATTAATTCCAAAATCTCGTTTACCGCGGAAGCTT-TGAAATGGTTTTGCATATTCAT
* * *
63271131 GGTATTTTCA-AAAATCATGCACATCTTTTGAAAACCCGCATGCTACCACTAGCAGGTATAAATC
130 GGTATTTT-AGAAAATCATGCACATCTTTTGAAAACCCGCATCCTACCACTAGAAAGTATAAATC
* *
63271195 ATCATAAAATAATAAAAGCCCAAATTAATGAATAAATCTTAAAAAGGCCTTTCACATAAAAATAC
194 ATAATAAAATAATAAAAGCCCAAATTAATGAATAAAACTTAAAAAGGCCTTTCACATAAAAATAC
63271260 CCATATAAAACTACTTATAAGTTAAAAGATACATTCAAAAGCGTAAGCTGTTGTGTGTTCACCTC
259 CCATATAAAACTACTTATAAGTTAAAAGATACATTCAAAAGCGTAAGCTGTTGTGTGTTCACCTC
* *
63271325 CGAGTCCCTCGCAACACCGATCCGCCAAAAAGATTACATGTACAGTTGAAACAGTT-GGACGAGT
324 CGAGTCCCTCGCAACACCAATCCGCCAAAAAGATTACATGTACAGTTAAAACAGTTAGG-CGAGT
* * * *
63271389 TTTCGAAAACTCAGTGTGTAATCCCAACGATAAACAAATAGTGAACAACACAGTTTGGGCCTAAG
388 TTTCAAAAACTCAGTGTGTAATCCCAACAATAAACAAACAGTGAACAACACAGTCTGGGCCTAAG
63271454 CCCATATCAGTAACAATTCAATATCAGTTAGGGCCTTGGCC
453 CCCATATCAGTAACAATTCAATATCAGTTAGGGCCTTGGCC
63271495 CATTCTGTAA
Statistics
Matches: 459, Mismatches: 32, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
494 104 0.23
495 354 0.77
496 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (494 bp):
AGCCTCTTCATGTGATCTAGAAAATAATTTTAAAACTTGCGTCACTATCAAAAAGTATTTACTTT
AAAACATTATTAATTCCAAAATCTCGTTTACCGCGGAAGCTTTGAAATGGTTTTGCATATTCATG
GTATTTTAGAAAATCATGCACATCTTTTGAAAACCCGCATCCTACCACTAGAAAGTATAAATCAT
AATAAAATAATAAAAGCCCAAATTAATGAATAAAACTTAAAAAGGCCTTTCACATAAAAATACCC
ATATAAAACTACTTATAAGTTAAAAGATACATTCAAAAGCGTAAGCTGTTGTGTGTTCACCTCCG
AGTCCCTCGCAACACCAATCCGCCAAAAAGATTACATGTACAGTTAAAACAGTTAGGCGAGTTTT
CAAAAACTCAGTGTGTAATCCCAACAATAAACAAACAGTGAACAACACAGTCTGGGCCTAAGCCC
ATATCAGTAACAATTCAATATCAGTTAGGGCCTTGGCCA
Found at i:63272044 original size:27 final size:27
Alignment explanation
Indices: 63271953--63272040 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
63271943 ACTGTACAGG
* *
63271953 GGTATTTCAGTCATTCTACCTTCTGAA
1 GGTATTTCGGTCATTCTACCTTATGAA
63271980 GGTATTTCGGTCATTCTACCTTATGAA
1 GGTATTTCGGTCATTCTACCTTATGAA
* * * *
63272007 GGTATTTTGGTCATTTTACCCTATGAG
1 GGTATTTCGGTCATTCTACCTTATGAA
63272034 GGTATTT
1 GGTATTT
63272041 TGGTTATTTC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.43
Consensus pattern (27 bp):
GGTATTTCGGTCATTCTACCTTATGAA
Found at i:63272105 original size:81 final size:81
Alignment explanation
Indices: 63272016--63272278 Score: 285
Period size: 81 Copynumber: 3.2 Consensus size: 81
63272006 AGGTATTTTG
* * *** * * * *
63272016 GTCATTTTACCCTATGAGGGTATTTTGGTTATTTCATCACATAAGGGCAAAATCTTCATTTTATC
1 GTCATTTTACCCTATAAGGGCAAAATCGTTATTTTATCACATAAGGGTAAAATCATCATTTTATC
*
63272081 ACATAAGGGCAAAATT
66 ACATAAGGGTAAAATT
* * *
63272097 GTCATTTTATCAC-ATAAGGGCAAAATCATTATTTTATCATATAAGGGTAAAATCATCATTTTAT
1 GTCATTTTA-CCCTATAAGGGCAAAATCGTTATTTTATCACATAAGGGTAAAATCATCATTTTAT
*
63272161 CACATAAGGGTAAAATC
65 CACATAAGGGTAAAATT
* * * * * * *
63272178 ATCATTTTATCATTTAAGGGCAAAATCGTTATTTTATCACATATGTGTAAAATCGTCATTTTATC
1 GTCATTTTACCCTATAAGGGCAAAATCGTTATTTTATCACATAAGGGTAAAATCATCATTTTATC
*
63272243 ACAAAAGGGTAAAATT
66 ACATAAGGGTAAAATT
* * *
63272259 GCCATTTTATCATATAAGGG
1 GTCATTTTACCCTATAAGGG
63272279 TTTAGAGACG
Statistics
Matches: 151, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
81 149 0.99
82 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (81 bp):
GTCATTTTACCCTATAAGGGCAAAATCGTTATTTTATCACATAAGGGTAAAATCATCATTTTATC
ACATAAGGGTAAAATT
Found at i:63272279 original size:27 final size:27
Alignment explanation
Indices: 63272046--63272279 Score: 279
Period size: 27 Copynumber: 8.7 Consensus size: 27
63272036 TATTTTGGTT
* * *
63272046 ATTTCATCACATAAGGGCAAAATCTTC
1 ATTTTATCACATAAGGGTAAAATCGTC
* *
63272073 ATTTTATCACATAAGGGCAAAATTGTC
1 ATTTTATCACATAAGGGTAAAATCGTC
* * *
63272100 ATTTTATCACATAAGGGCAAAATCATT
1 ATTTTATCACATAAGGGTAAAATCGTC
* *
63272127 ATTTTATCATATAAGGGTAAAATCATC
1 ATTTTATCACATAAGGGTAAAATCGTC
*
63272154 ATTTTATCACATAAGGGTAAAATCATC
1 ATTTTATCACATAAGGGTAAAATCGTC
** * *
63272181 ATTTTATCATTTAAGGGCAAAATCGTT
1 ATTTTATCACATAAGGGTAAAATCGTC
* *
63272208 ATTTTATCACATATGTGTAAAATCGTC
1 ATTTTATCACATAAGGGTAAAATCGTC
* * *
63272235 ATTTTATCACAAAAGGGTAAAATTGCC
1 ATTTTATCACATAAGGGTAAAATCGTC
*
63272262 ATTTTATCATATAAGGGT
1 ATTTTATCACATAAGGGT
63272280 TTAGAGACGC
Statistics
Matches: 179, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 179 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (27 bp):
ATTTTATCACATAAGGGTAAAATCGTC
Found at i:63277086 original size:27 final size:27
Alignment explanation
Indices: 63277048--63277102 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
63277038 CAAGGGCGTG
*
63277048 TCTGTTGGCCGTGTGTGGCACACGGGC
1 TCTGTTGGCCGTGAGTGGCACACGGGC
63277075 TCTGTTGGCCGTGAGTGGCACACGGGC
1 TCTGTTGGCCGTGAGTGGCACACGGGC
63277102 T
1 T
63277103 AGAACATGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.09, C:0.25, G:0.40, T:0.25
Consensus pattern (27 bp):
TCTGTTGGCCGTGAGTGGCACACGGGC
Found at i:63289182 original size:40 final size:40
Alignment explanation
Indices: 63289122--63289303 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
63289112 AACCCAAGTA
* * *
63289122 CCTTCGGGA-TTTAGCCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAAGCAA-TAGCACAAATG
* * *
63289161 TCTTCGGGTCTTAACCCGGATAT-AGTCAATAGCACAAAAG
1 CCTTCGGGACTTAACCCGGATATAAG-CAATAGCACAAATG
* * *
63289201 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAAGCAATAGCACAAATG
* *
63289241 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAAGCAATAGCACAAATG
*
63289281 CCTTCGGGACTTAACCCAGATAT
1 CCTTCGGGACTTAACCCGGATAT
63289304 CATTCGAATA
Statistics
Matches: 125, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
39 7 0.06
40 114 0.91
41 4 0.03
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATATAAGCAATAGCACAAATG
Found at i:63289259 original size:80 final size:80
Alignment explanation
Indices: 63289122--63289303 Score: 251
Period size: 80 Copynumber: 2.3 Consensus size: 80
63289112 AACCCAAGTA
* * * * *
63289122 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGTCTTCGGGTCTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAACCCGGATATAA
63289186 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
* *
63289201 CCTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATAT-AGCAACTAGCACAAATGCCTTCGGGACTTAACCCGGATATA
*
63289265 ATCAATAGCACAAATG
65 ATCAATAGCACAAAAG
* *
63289281 CCTTCGGGACTTAACCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
63289304 CATTCGAATA
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
79 13 0.14
80 76 0.84
81 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAACCCGGATATAA
TCAATAGCACAAAAG
Found at i:63291492 original size:28 final size:29
Alignment explanation
Indices: 63291460--63291574 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
63291450 TACCTATATC
* * *
63291460 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
63291488 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
63291517 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
63291546 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
63291574 T
1 T
63291575 TCATGCTCGC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 26 0.34
29 49 0.64
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:63291521 original size:57 final size:58
Alignment explanation
Indices: 63291451--63291561 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
63291441 AATTTCACAT
* *
63291451 ACCTATATCTGGCCCACTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCACTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
63291508 ACCTATATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCACTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
63291562 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (58 bp):
ACCTATATATGGCCCACTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:63304768 original size:42 final size:41
Alignment explanation
Indices: 63304656--63304777 Score: 111
Period size: 42 Copynumber: 2.9 Consensus size: 41
63304646 CATCTGTCTG
* * *
63304656 AGATATCGTGTAAGACCGTGTATGGGACATAGGCCTCGATT
1 AGATTTCGTGTAAGACCATGTATGGGACATAGGCATCGATT
* * * *
63304697 GAGATTTATGTATAAGACCATGTCTGGGACATCGGCATCG-TAT
1 -AGATTT-CGTGTAAGACCATGTATGGGACATAGGCATCGAT-T
* * *
63304740 ATGATTTCGTGTAAGACCCTGTTTGGGACAGAGGCATC
1 A-GATTTCGTGTAAGACCATGTATGGGACATAGGCATC
63304778 AATATTGAAT
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 32 0.50
43 32 0.50
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (41 bp):
AGATTTCGTGTAAGACCATGTATGGGACATAGGCATCGATT
Found at i:63307085 original size:66 final size:68
Alignment explanation
Indices: 63307009--63307195 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
63306999 TAGTACCACT
*
63307009 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
63307071 CACG
65 CACG
63307075 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
63307140 ATCACG
63 ATCACG
63307146 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
63307196 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:63307120 original size:71 final size:71
Alignment explanation
Indices: 63307032--63307195 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63307022 CGATTTGTCT
63307032 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63307097 CTTTCA
66 CTTTCA
63307103 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63307168 CTTTCA
66 CTTTCA
63307174 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
63307196 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:63307233 original size:71 final size:70
Alignment explanation
Indices: 63307032--63307229 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
63307022 CGATTTGTCT
* * *
63307032 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
63307097 CTTTCA
65 CTTTCA
* * *
63307103 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
63307168 CTTTCA
65 CTTTCA
* *
63307174 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
63307230 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:63314593 original size:66 final size:68
Alignment explanation
Indices: 63314517--63314666 Score: 234
Period size: 71 Copynumber: 2.2 Consensus size: 68
63314507 TAGTACCACT
*
63314517 CATGCGACCTAGC-C-TAT-TTGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCACTTATCTT-TCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
63314579 CACG
65 CACG
63314583 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-AC--TTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
63314648 ATCACG
63 ATCACG
63314654 CATGCGACCTAGC
1 CATGCGACCTAGC
63314667 TACTACAGGG
Statistics
Matches: 77, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
66 13 0.17
68 1 0.01
71 61 0.79
72 2 0.03
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (68 bp):
CATGCGACCTAGCACTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:63314702 original size:71 final size:71
Alignment explanation
Indices: 63314535--63314695 Score: 243
Period size: 71 Copynumber: 2.3 Consensus size: 71
63314525 CTAGCCTATT
63314535 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
** *
63314600 TTTATC
66 TACAGC
* *
63314606 TTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTAC-
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
*
63314670 TACAGGG
66 TACA-GC
*
63314677 TGTCTCGTAGCTTTCTTGT
1 TGTCTCGTAGCTCTCTTGT
63314696 ACACATGATG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
70 2 0.03
71 78 0.98
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.35
Consensus pattern (71 bp):
TGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
TACAGC
Found at i:63326388 original size:23 final size:24
Alignment explanation
Indices: 63326357--63326405 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
63326347 GAGTTTATTC
*
63326357 AAAATGAAACCAAAATTTTCT-TA
1 AAAAAGAAACCAAAATTTTCTCTA
63326380 AAAAAGAAACCAAAATTTTCTCTA
1 AAAAAGAAACCAAAATTTTCTCTA
63326404 AA
1 AA
63326406 GCCTAGGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.55, C:0.14, G:0.04, T:0.27
Consensus pattern (24 bp):
AAAAAGAAACCAAAATTTTCTCTA
Found at i:63331830 original size:49 final size:50
Alignment explanation
Indices: 63331757--63331907 Score: 187
Period size: 50 Copynumber: 3.0 Consensus size: 50
63331747 AGCCGAAGCT
* * **
63331757 ATCTGGTACGCATAGTAGTTTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACA
* * * *
63331806 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACA
** * *
63331856 ATCTAATACATGTAGTAGCCTGCACTTAGTACTACACATGCGACCTCACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACA
63331906 AT
1 AT
63331908 AGATCATTCG
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
49 39 0.45
50 48 0.55
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACA
Found at i:63331884 original size:50 final size:50
Alignment explanation
Indices: 63331777--63331907 Score: 192
Period size: 50 Copynumber: 2.6 Consensus size: 50
63331767 CATAGTAGTT
* **
63331777 TGCACTTAGTACTACACATGCGACC-AACAATCTGGTACACGTAGTAGCC
1 TGCACTTAGTACTACACATGCGACCTCACAATCTAATACACGTAGTAGCC
* * * *
63331826 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACATGTAGTAGCC
1 TGCACTTAGTACTACACATGCGACCTCACAATCTAATACACGTAGTAGCC
63331876 TGCACTTAGTACTACACATGCGACCTCACAAT
1 TGCACTTAGTACTACACATGCGACCTCACAAT
63331908 AGATCATTCG
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 23 0.32
50 48 0.68
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (50 bp):
TGCACTTAGTACTACACATGCGACCTCACAATCTAATACACGTAGTAGCC
Found at i:63334638 original size:28 final size:28
Alignment explanation
Indices: 63334573--63334673 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63334563 ATAGTGAATC
*
63334573 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
63334602 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
63334630 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
63334660 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63334674 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63337725 original size:29 final size:29
Alignment explanation
Indices: 63337663--63337765 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
63337653 GTGACGAGAT
* * *
63337663 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
63337692 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
63337721 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
63337750 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63337766 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:63340287 original size:14 final size:15
Alignment explanation
Indices: 63340268--63340330 Score: 62
Period size: 14 Copynumber: 4.4 Consensus size: 15
63340258 TAAAGATACC
63340268 AAGAAAACC-GAATA
1 AAGAAAACCAGAATA
*
63340282 AAGAAATCCA-AAT-
1 AAGAAAACCAGAATA
63340295 -AGAAAACCCAGAATA
1 AAGAAAA-CCAGAATA
* *
63340310 AATAAATCCAGAATA
1 AAGAAAACCAGAATA
63340325 AAGAAA
1 AAGAAA
63340331 CCCAAGATAC
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
12 5 0.13
13 3 0.08
14 14 0.36
15 13 0.33
16 4 0.10
ACGTcount: A:0.63, C:0.14, G:0.11, T:0.11
Consensus pattern (15 bp):
AAGAAAACCAGAATA
Found at i:63340316 original size:28 final size:29
Alignment explanation
Indices: 63340269--63340334 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
63340259 AAAGATACCA
63340269 AGAAAA-CC-GAATAAAGAAATCCA-AAT
1 AGAAAACCCAGAATAAAGAAATCCAGAAT
*
63340295 AGAAAACCCAGAATAAATAAATCCAGAAT
1 AGAAAACCCAGAATAAAGAAATCCAGAAT
*
63340324 AAAGAAACCCA
1 AGA-AAACCCA
63340335 AGATACGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 6 0.18
27 2 0.06
28 14 0.41
29 5 0.15
30 7 0.21
ACGTcount: A:0.61, C:0.18, G:0.11, T:0.11
Consensus pattern (29 bp):
AGAAAACCCAGAATAAAGAAATCCAGAAT
Found at i:63340322 original size:15 final size:14
Alignment explanation
Indices: 63340277--63340326 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 14
63340267 CAAGAAAACC
63340277 GAATAAAGAAATCCA
1 GAATAAA-AAATCCA
* *
63340292 -AATAGAAAACCCA
1 GAATAAAAAATCCA
63340305 GAATAAATAAATCCA
1 GAATAAA-AAATCCA
63340320 GAATAAA
1 GAATAAA
63340327 GAAACCCAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 6 0.21
14 10 0.34
15 13 0.45
ACGTcount: A:0.62, C:0.14, G:0.10, T:0.14
Consensus pattern (14 bp):
GAATAAAAAATCCA
Found at i:63343492 original size:51 final size:50
Alignment explanation
Indices: 63343358--63343492 Score: 162
Period size: 50 Copynumber: 2.7 Consensus size: 50
63343348 GAAGCTATTT
* *
63343358 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCACACCATCG
** *** * ***
63343408 AATACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCACA-CCATCG
63343459 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
63343493 TGCGACCTCA
Statistics
Matches: 68, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
50 37 0.54
51 31 0.46
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (50 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCACACCATCG
Found at i:63345607 original size:40 final size:40
Alignment explanation
Indices: 63345562--63345729 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
63345552 CGGAATACAA
63345562 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
63345602 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
63345642 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
63345682 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
63345722 CCGGATAT
1 CCGGATAT
63345730 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:63353658 original size:40 final size:40
Alignment explanation
Indices: 63353613--63353780 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
63353603 CGGAATACAA
63353613 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
63353653 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
63353693 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
63353733 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
63353773 CCGGATAT
1 CCGGATAT
63353781 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:63361588 original size:42 final size:42
Alignment explanation
Indices: 63361541--63361659 Score: 125
Period size: 42 Copynumber: 2.8 Consensus size: 42
63361531 TACTGAGATT
* * *
63361541 TCATATAAGAGCATATCTGGGATATGGCATCGGTATG-TGATC
1 TCATATAAGACCATATCAGGGATATGGCATCGATATGAT-ATC
* * *
63361583 TCATATAAGACCATGTCAGGGACATGGCATCGATATGATATT
1 TCATATAAGACCATATCAGGGATATGGCATCGATATGATATC
* * *
63361625 TCATGTAAGACCATATCCA-GGATATGACATTGATA
1 TCATATAAGACCATAT-CAGGGATATGGCATCGATA
63361660 CGGTACTAAG
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 61 0.95
43 3 0.05
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (42 bp):
TCATATAAGACCATATCAGGGATATGGCATCGATATGATATC
Found at i:63367214 original size:33 final size:33
Alignment explanation
Indices: 63367172--63367237 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
63367162 AAAATAATTG
63367172 TTTTATTATTATTTTAATGTTTACAACATGTTA
1 TTTTATTATTATTTTAATGTTTACAACATGTTA
63367205 TTTTATTATTATTTTAATGTTTACAACATGTTA
1 TTTTATTATTATTTTAATGTTTACAACATGTTA
63367238 GTAGTGTCGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (33 bp):
TTTTATTATTATTTTAATGTTTACAACATGTTA
Found at i:63369951 original size:28 final size:28
Alignment explanation
Indices: 63369911--63369979 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
63369901 TAGTAAGTCT
*
63369911 GCACACTTAGTGCT-TAATAATCAAACTC
1 GCACACTTAGTGCTAT-ACAATCAAACTC
*
63369939 GCACACTTAGTGCTATACAATTAAACTC
1 GCACACTTAGTGCTATACAATCAAACTC
63369967 GCACACTTAGTGC
1 GCACACTTAGTGC
63369980 CAATCTCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (28 bp):
GCACACTTAGTGCTATACAATCAAACTC
Found at i:63372100 original size:28 final size:26
Alignment explanation
Indices: 63372000--63372114 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
63371990 AGCATGGCTG
* * *
63372000 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
63372026 CCAGGTACAGATATTGTGGTAGAGCCA
1 CCA-GAACAGATATTGTGGCAGAGCCA
*
63372053 CCAGAACAGATATTAGTGGCAAAGCCA
1 CCAGAACAGATATT-GTGGCAGAGCCA
* *
63372080 CCAGAAATAGATACTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
63372108 CCAGAAC
1 CCAGAAC
63372115 GCTTCCTCCA
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 13 0.18
27 37 0.50
28 22 0.30
29 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:63374235 original size:46 final size:46
Alignment explanation
Indices: 63374182--63374364 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
63374172 TATATATACA
* * * *
63374182 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
63374228 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
63374274 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
63374320 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
63374365 ATACACTTCC
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:63374407 original size:22 final size:22
Alignment explanation
Indices: 63374381--63374456 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
63374371 TTCCACGTTC
63374381 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
63374403 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
63374427 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
63374450 ATCACAT
1 ATCACAT
63374457 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:63374409 original size:47 final size:47
Alignment explanation
Indices: 63374338--63374669 Score: 513
Period size: 47 Copynumber: 7.1 Consensus size: 47
63374328 ACACATTTCG
* * * * * *
63374338 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
63374385 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
63374432 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63374479 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63374526 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63374573 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
63374620 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
63374667 CAT
1 CAT
63374670 AAAATACTAA
Statistics
Matches: 269, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 268 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:63374526 original size:25 final size:25
Alignment explanation
Indices: 63374497--63374621 Score: 76
Period size: 23 Copynumber: 5.2 Consensus size: 25
63374487 ATTCGGCCTT
63374497 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
63374522 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
63374544 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
63374569 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
63374591 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
63374616 ATCACA
1 ATCACA
63374622 TTTGCCATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 12 0.16
23 22 0.30
24 22 0.30
25 18 0.24
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:63380086 original size:123 final size:123
Alignment explanation
Indices: 63379865--63380088 Score: 315
Period size: 123 Copynumber: 1.8 Consensus size: 123
63379855 GAATTATGTG
* * * * * * * *
63379865 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
63379930 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGGTTTGAGCCTTAGTAACGA
*
63379988 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
63380053 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTAGAAATTATAT
63380089 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
122 1 0.01
123 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (123 bp):
AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGGTTTGAGCCTTAGTAACGA
Found at i:63380210 original size:40 final size:40
Alignment explanation
Indices: 63380083--63380212 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
63380073 ATGCTGGAAA
* *
63380083 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
63380123 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63380163 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63380203 TTATATCCGG
1 TTATATCCGG
63380213 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63388130 original size:124 final size:124
Alignment explanation
Indices: 63387908--63388132 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
63387898 GAATTATGTG
* * * * * * * *
63387908 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
63387973 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
63388032 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
63388097 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTAGAAATTATAT
63388133 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (124 bp):
AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:63388254 original size:40 final size:40
Alignment explanation
Indices: 63388127--63388256 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
63388117 ATGCTGGAAA
* *
63388127 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
63388167 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63388207 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63388247 TTATATCCGG
1 TTATATCCGG
63388257 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63391789 original size:27 final size:26
Alignment explanation
Indices: 63391752--63391915 Score: 174
Period size: 27 Copynumber: 6.2 Consensus size: 26
63391742 GCATGGCTGT
* **
63391752 CAGAACAGATATTGTGACAGAATCAC
1 CAGAACAGATATTGTGGCAGAGCCAC
63391778 CAGATACAGATATTGTGGCAGAGCCAC
1 CAGA-ACAGATATTGTGGCAGAGCCAC
*
63391805 CAGAATAGATATTGGTGGC-G-G--AC
1 CAGAACAGATATT-GTGGCAGAGCCAC
63391828 CAGATACAGATATTGTGGCAGAGCCAC
1 CAGA-ACAGATATTGTGGCAGAGCCAC
* *
63391855 CAGAATAGATATTTGTGGCGGAGCCAC
1 CAGAACAGATA-TTGTGGCAGAGCCAC
* *
63391882 CAGAAACATATATTTGTGGCATAGCCAC
1 CAG-AACAGATA-TTGTGGCAGAGCCAC
63391910 CAGAAC
1 CAGAAC
63391916 GCTTCCTCCA
Statistics
Matches: 118, Mismatches: 11, Indels: 17
0.81 0.08 0.12
Matches are distributed among these distances:
23 11 0.09
24 9 0.08
25 2 0.02
26 19 0.16
27 54 0.46
28 23 0.19
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGAACAGATATTGTGGCAGAGCCAC
Found at i:63391840 original size:50 final size:53
Alignment explanation
Indices: 63391775--63391914 Score: 205
Period size: 50 Copynumber: 2.7 Consensus size: 53
63391765 GTGACAGAAT
63391775 CACCAGATACAGATATTGTGGCAGAGCCACCAGAATAGATATTGGTGGC-G-G
1 CACCAGATACAGATATTGTGGCAGAGCCACCAGAATAGATATTGGTGGCGGAG
*
63391826 -ACCAGATACAGATATTGTGGCAGAGCCACCAGAATAGATATTTGTGGCGGAG
1 CACCAGATACAGATATTGTGGCAGAGCCACCAGAATAGATATTGGTGGCGGAG
* * *
63391878 CCACCAGAAACATATATTTGTGGCATAGCCACCAGAA
1 -CACCAGATACAGATA-TTGTGGCAGAGCCACCAGAA
63391915 CGCTTCCTCC
Statistics
Matches: 80, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
50 47 0.59
51 1 0.01
52 1 0.01
54 12 0.15
55 19 0.24
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.20
Consensus pattern (53 bp):
CACCAGATACAGATATTGTGGCAGAGCCACCAGAATAGATATTGGTGGCGGAG
Found at i:63395517 original size:27 final size:27
Alignment explanation
Indices: 63395487--63395753 Score: 324
Period size: 27 Copynumber: 10.0 Consensus size: 27
63395477 CCCTAATTGA
*
63395487 TAAAAT-ACCTGTTTTGCCCTTATGCGG
1 TAAAATGA-CTGTTTTGCCCTTATGTGG
*
63395514 TAAAATGATTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
63395541 TAAAATGATTGTTTTGCCCTAAT-TGA
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
63395567 TAAAATGACTGTTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
63395594 TAAAATGACTATTTTGCCCTAAT-TGA
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
63395620 TAAAATGACTATTTTGGCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
63395647 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
63395674 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
** *
63395701 TAAAATGACTGTTTCACCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
63395728 TAAATTGACTGTTTTTCCCCTATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
63395754 AAATATGTTT
Statistics
Matches: 213, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
26 46 0.22
27 166 0.78
28 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:63395584 original size:53 final size:54
Alignment explanation
Indices: 63395487--63395753 Score: 324
Period size: 53 Copynumber: 5.0 Consensus size: 54
63395477 CCCTAATTGA
* *
63395487 TAAAAT-ACCTGTTTTGCCCTTATGCGGTAAAATGATTGTTTTGCCCTTATGTGG
1 TAAAATGA-CTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGG
* * * *
63395541 TAAAATGATTGTTTTGCCCTAAT-TGATAAAATGACTGTTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGG
* * * * * *
63395594 TAAAATGACTATTTTGCCCTAAT-TGATAAAATGACTATTTTGGCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGG
* *
63395647 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGG
** * * * *
63395701 TAAAATGACTGTTTCACCCTTATATGGTAAATTGACTGTTTTTCCCCTATGTG
1 TAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTG
63395754 AAATATGTTT
Statistics
Matches: 189, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
53 97 0.51
54 91 0.48
55 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (54 bp):
TAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGG
Found at i:63395610 original size:80 final size:81
Alignment explanation
Indices: 63395477--63395753 Score: 346
Period size: 80 Copynumber: 3.5 Consensus size: 81
63395467 TGTGCTAGAC
* * *
63395477 CCCTAAT-TGATAAAAT-ACCTGTTTTGCCCTTATGCGGTAAAATGATTGTTTTGCCCTTATGTG
1 CCCTAATATGATAAAATGA-CTGTTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTG
*
63395540 GTAAAATGATTGTTTTG
65 GTAAAATGACTGTTTTG
* * *
63395557 CCCTAAT-TGATAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTAAT-TGA
1 CCCTAATATGATAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTGG
*
63395620 TAAAATGACTATTTTG
66 TAAAATGACTGTTTTG
* * * *
63395636 GCCTTATATGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTGG
1 CCCTAATATGATAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTGG
**
63395701 TAAAATGACTGTTTCA
66 TAAAATGACTGTTTTG
* * * * *
63395717 CCCTTATATGGTAAATTGACTGTTTTTCCCCTATGTG
1 CCCTAATATGATAAAATGACTGTTTTGCCCTTATGTG
63395754 AAATATGTTT
Statistics
Matches: 171, Mismatches: 23, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
79 21 0.12
80 102 0.60
81 48 0.28
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (81 bp):
CCCTAATATGATAAAATGACTGTTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTGG
TAAAATGACTGTTTTG
Found at i:63401238 original size:29 final size:29
Alignment explanation
Indices: 63401205--63401326 Score: 163
Period size: 29 Copynumber: 4.2 Consensus size: 29
63401195 TGACGAGATC
* *
63401205 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
* * *
63401234 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
63401263 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
* * * *
63401292 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAT
63401321 GGCACT
1 GGCACT
63401327 GGGCGTGCGA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 84 1.00
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAT
Found at i:63403108 original size:29 final size:29
Alignment explanation
Indices: 63403075--63403235 Score: 214
Period size: 29 Copynumber: 5.6 Consensus size: 29
63403065 GTGACGAGAT
63403075 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
63403104 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
63403133 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
63403162 TGACACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
63403191 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
63403220 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
63403236 GGCTTAAATT
Statistics
Matches: 116, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 116 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:63414056 original size:49 final size:49
Alignment explanation
Indices: 63414000--63414214 Score: 387
Period size: 49 Copynumber: 4.4 Consensus size: 49
63413990 TATCAAAATT
63414000 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
63414049 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
63414098 TGTGAAAAG-GTATATATATGTGATAAGGCCTCATGGCCGATGTGATGAA
1 TGTG-AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
63414147 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
63414196 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
63414215 ATGTGGTAAA
Statistics
Matches: 159, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
48 3 0.02
49 152 0.96
50 4 0.03
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:63414337 original size:36 final size:36
Alignment explanation
Indices: 63414297--63414365 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
63414287 TTCCGGGTGA
63414297 GACCCGATGACTACGTGTGGAGATTATGTCCGGCAC
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGCAC
63414333 GACCCGATGACTACGTGTGGAGATTATGTCCGG
1 GACCCGATGACTACGTGTGGAGATTATGTCCGG
63414366 GTAAGACTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (36 bp):
GACCCGATGACTACGTGTGGAGATTATGTCCGGCAC
Found at i:63416603 original size:199 final size:200
Alignment explanation
Indices: 63416233--63416623 Score: 588
Period size: 199 Copynumber: 2.0 Consensus size: 200
63416223 GAGAATTGAG
* *
63416233 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTTCCG
1 AATGATATATCCGGACTAAATTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTTCCG
*
63416298 AAGAGCATTCGTGCTAATGATATATCCGGACTAAGTTCCGAAGAGCATTTGTGCTAATGATATAT
66 AAGAGCATTCGTGCTAATGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATATAT
** *
63416363 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATATATCCGGACTAAGT-TCGAAGAGCATTC
131 CCGGGCTAAACCCCGAAGAGCATTCGTGCTAATGATATATCCGGACTAAGTCCCGAAGAGCATTC
63416427 GTGCT
196 GTGCT
* * *
63416432 AATGATATATCTGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGA-TAAGTTCC
1 AATGATATATCCGGACTAAATTCCGAAGAGCATTCGTGCTAATGATGTATCC-GGACTAAGTTCC
* * * *
63416496 GAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
65 GAAGAGCATTCGTGCTAATGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATATA
* ** * * *
63416561 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
130 TCCGGGCTAAACCCCGAAGAGCATTCGTGCTAATGATATATCCGGACTAAGTCCCGAAGAGCA
63416624 ATCATGCTGG
Statistics
Matches: 171, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
199 159 0.93
200 12 0.07
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (200 bp):
AATGATATATCCGGACTAAATTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCTAATGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATATAT
CCGGGCTAAACCCCGAAGAGCATTCGTGCTAATGATATATCCGGACTAAGTCCCGAAGAGCATTC
GTGCT
Found at i:63416635 original size:40 final size:40
Alignment explanation
Indices: 63416235--63416623 Score: 537
Period size: 40 Copynumber: 9.8 Consensus size: 40
63416225 GAATTGAGAA
* * *
63416235 TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* * *
63416275 TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* * *
63416315 TGATATATCCGGACTAAGTTCCGAAGAGCATTTGTGCTAA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* *
63416355 TGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* *
63416395 TGATATATCCGGACTAAGTT-CGAAGAGCATTCGTGCTAA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* *
63416434 TGATATATCTGGGCTAAATTCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* *
63416474 TGATGTATCCGGGATAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
*
63416514 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* *** *
63416554 TGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* * *
63416594 TGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCA
63416624 ATCATGCTGG
Statistics
Matches: 321, Mismatches: 27, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
39 36 0.11
40 285 0.89
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
Found at i:63420093 original size:49 final size:49
Alignment explanation
Indices: 63420037--63420251 Score: 387
Period size: 49 Copynumber: 4.4 Consensus size: 49
63420027 TATCAAAATT
63420037 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
63420086 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
63420135 TGTGAAAAG-GTATATATATGTGATAAGGCCTCATGGCCGATGTGATGAA
1 TGTG-AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
63420184 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
63420233 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
63420252 ATGTGGTAAA
Statistics
Matches: 159, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
48 3 0.02
49 152 0.96
50 4 0.03
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:63420375 original size:37 final size:37
Alignment explanation
Indices: 63420334--63420404 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
63420324 TTCCGGGTGA
63420334 GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
63420371 GACCCGATGACTACGTGTGGAGATTATGTCCGGG
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGG
63420405 TAAGACTTCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.34, T:0.23
Consensus pattern (37 bp):
GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
Found at i:63428935 original size:18 final size:18
Alignment explanation
Indices: 63428921--63428955 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
63428911 ACAGTAATAG
63428921 TAAATAGTGCAGTAACAA
1 TAAATAGTGCAGTAACAA
*
63428939 TAAATAGTGTAGTAACA
1 TAAATAGTGCAGTAACA
63428956 GTTTAAACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.26
Consensus pattern (18 bp):
TAAATAGTGCAGTAACAA
Found at i:63429317 original size:27 final size:27
Alignment explanation
Indices: 63429280--63429548 Score: 321
Period size: 27 Copynumber: 10.0 Consensus size: 27
63429270 ATATATACCT
* *
63429280 CACATAGGGGCAAAATAGTCATCTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
63429307 CATATAAGGGCAAAATAGTCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
63429334 CATATATAGGGCAAACAT--TCATTCTAC
1 CACATA-AGGGCAAA-ATAGTCATTTTAC
* *
63429361 CATATAAGGACAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
63429388 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
63429415 CACATAAGGGAAAAATAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
63429442 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
63429469 CACATAAGGG-AAAAGTAGCCATTTTAC
1 CACATAAGGGCAAAA-TAGTCATTTTAC
* *
63429496 CATATAAGGGCAAAACA-TCCATTTTAC
1 CACATAAGGGCAAAATAGT-CATTTTAC
* * *
63429523 CACATAAGGACAAAACAATCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
63429549 TCAATTAGGT
Statistics
Matches: 212, Mismatches: 22, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
25 2 0.01
26 11 0.05
27 184 0.87
28 13 0.06
29 2 0.01
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:63443231 original size:16 final size:17
Alignment explanation
Indices: 63443210--63443242 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
63443200 CACATTGAAG
63443210 TGTTTT-TTGAAAACCT
1 TGTTTTATTGAAAACCT
63443226 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
63443243 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.45
Consensus pattern (17 bp):
TGTTTTATTGAAAACCT
Found at i:63444614 original size:29 final size:28
Alignment explanation
Indices: 63444546--63444615 Score: 68
Period size: 29 Copynumber: 2.5 Consensus size: 28
63444536 AAGTCTACAT
* * *
63444546 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCACACTAGGCCAAATC
* * * *
63444574 TCATTGAAATGGCACATTAAGGCCAAATC
1 ACATTCATATGGCACACT-AGGCCAAATC
63444603 ACATTCATATGGC
1 ACATTCATATGGC
63444616 CCATCTGGCC
Statistics
Matches: 31, Mismatches: 10, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
28 12 0.39
29 19 0.61
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (28 bp):
ACATTCATATGGCACACTAGGCCAAATC
Found at i:63450134 original size:40 final size:40
Alignment explanation
Indices: 63450079--63450336 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
63450069 TGGATGATAA
* *
63450079 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
63450119 CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63450159 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63450199 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63450239 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
63450279 CCAGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
63450319 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
63450337 TACTTGGCTT
Statistics
Matches: 197, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.08
40 181 0.92
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63458266 original size:40 final size:40
Alignment explanation
Indices: 63458211--63458467 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
63458201 TGGATGATAA
* * *
63458211 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
63458251 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
63458291 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
63458331 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63458370 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
63458410 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
63458450 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
63458468 TACTTGGCTT
Statistics
Matches: 203, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
39 55 0.27
40 148 0.73
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63458362 original size:79 final size:80
Alignment explanation
Indices: 63458211--63458467 Score: 378
Period size: 79 Copynumber: 3.2 Consensus size: 80
63458201 TGGATGATAA
* * *
63458211 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
63458275 GTGCGAGTTACTATAT
65 GTGCGAGTTACTATAT
63458291 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
63458355 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * *
63458370 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* *
63458435 AGCAAG-TAGCTATAT
66 TGCGAGTTA-CTATAT
* *
63458450 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
63458468 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 10, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
79 95 0.58
80 69 0.42
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:63458425 original size:119 final size:119
Alignment explanation
Indices: 63458214--63458467 Score: 386
Period size: 119 Copynumber: 2.1 Consensus size: 119
63458204 ATGATAACCG
* *
63458214 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGTGC
* * *
63458279 GAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
66 GAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGCAAG-TAGCTATATCC
* *
63458333 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTGGTG
1 GGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTGGTG
*
63458397 CGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTCGAGCAAGTAGCTATATCC
65 CGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGCAAGTAGCTATATCC
* *
63458452 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
63458468 TACTTGGCTT
Statistics
Matches: 123, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
118 3 0.02
119 120 0.98
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (119 bp):
GGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGTGC
GAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCGAGCAAGTAGCTATATCC
Found at i:63460168 original size:8 final size:8
Alignment explanation
Indices: 63460154--63460190 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
63460144 TCATAACCAG
63460154 ATTTCGGC
1 ATTTCGGC
*
63460162 TTTTCGGC
1 ATTTCGGC
63460170 ATTTCGGC
1 ATTTCGGC
*
63460178 TTTTCGGC
1 ATTTCGGC
63460186 ATTTC
1 ATTTC
63460191 TGGATTTGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.08, C:0.24, G:0.22, T:0.46
Consensus pattern (8 bp):
ATTTCGGC
Found at i:63460175 original size:16 final size:16
Alignment explanation
Indices: 63460154--63460190 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
63460144 TCATAACCAG
63460154 ATTTCGGCTTTTCGGC
1 ATTTCGGCTTTTCGGC
63460170 ATTTCGGCTTTTCGGC
1 ATTTCGGCTTTTCGGC
63460186 ATTTC
1 ATTTC
63460191 TGGATTTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.08, C:0.24, G:0.22, T:0.46
Consensus pattern (16 bp):
ATTTCGGCTTTTCGGC
Found at i:63467784 original size:49 final size:49
Alignment explanation
Indices: 63467728--63467905 Score: 232
Period size: 49 Copynumber: 3.5 Consensus size: 49
63467718 TACATATATG
*
63467728 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
* *
63467777 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
*
63467826 TGTGATAAGGCC-ATTGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCC-AAT-G-CGA-----TGAATGTGAAAGTGTATGTATA
*
63467882 TGTGATAAGGCCTAATGGCTAATG
1 TGTGATAAGGCCTAATGGCCAATG
63467906 TAAAATATAT
Statistics
Matches: 112, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
48 6 0.05
49 60 0.54
50 1 0.01
51 2 0.02
55 1 0.01
56 37 0.33
57 5 0.04
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
Found at i:63467846 original size:56 final size:56
Alignment explanation
Indices: 63467785--63467893 Score: 209
Period size: 56 Copynumber: 1.9 Consensus size: 56
63467775 TATGTGATAA
63467785 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCATT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCATT
*
63467841 GGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCC
63467894 TAATGGCTAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.28, C:0.11, G:0.32, T:0.29
Consensus pattern (56 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCATT
Found at i:63468058 original size:37 final size:37
Alignment explanation
Indices: 63468004--63468085 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 37
63467994 AATATGTTTT
*
63468004 GGGTGAGA-CCGATGACTACGTGTGGAGATTATGACC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGACC
*
63468040 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGACC
63468077 GGGTAAGAC
1 GGGTAAGAC
63468086 TTCTTTTATA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
36 7 0.16
37 36 0.84
ACGTcount: A:0.26, C:0.17, G:0.35, T:0.22
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGACC
Found at i:63488710 original size:40 final size:40
Alignment explanation
Indices: 63488655--63488828 Score: 271
Period size: 40 Copynumber: 4.4 Consensus size: 40
63488645 TGATAACCGA
*
63488655 GCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
63488695 GCTAAGTCCCGAAGGCATTTGTACGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
63488735 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
63488775 GCTAAATCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
*
63488814 GCTAATTCCCGAAGG
1 GCTAAGTCCCGAAGG
63488829 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 17 0.14
40 108 0.86
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:63494426 original size:51 final size:51
Alignment explanation
Indices: 63494350--63494452 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
63494340 TGATAATGTT
* *
63494350 AGCTTATCTATTCATCCGAGAAGTAATAAGTTGTATAGTGATTTGAACCAG
1 AGCTTATCTATTCATCCAAGAAGTAATAAGATGTATAGTGATTTGAACCAG
*
63494401 AGCTTATCTATTCATCCAATAAGTAATAAGATGTATAGTGATTTGAACCAG
1 AGCTTATCTATTCATCCAAGAAGTAATAAGATGTATAGTGATTTGAACCAG
63494452 A
1 A
63494453 TGTAATGGTG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (51 bp):
AGCTTATCTATTCATCCAAGAAGTAATAAGATGTATAGTGATTTGAACCAG
Found at i:63498567 original size:24 final size:24
Alignment explanation
Indices: 63498509--63498630 Score: 149
Period size: 25 Copynumber: 5.0 Consensus size: 24
63498499 ACTTTATCAT
*
63498509 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
63498534 ATAACT-GGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63498557 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
* * *
63498582 GTAACTAGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
63498607 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63498631 CACTTCCTCC
Statistics
Matches: 87, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
23 16 0.18
24 21 0.24
25 50 0.57
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Done.