Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 201 of 433
Found at i:63498704 original size:20 final size:20
Alignment explanation
Indices: 63498679--63498725 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
63498669 TTATGAATAC
63498679 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
63498699 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63498719 ACCATGT
1 ATCATGT
63498726 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63498804 original size:25 final size:25
Alignment explanation
Indices: 63498762--63498811 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
63498752 ATATTTAAAC
* * *
63498762 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63498787 CCTAGGGGCAAAACGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63498812 GATTATAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63505569 original size:27 final size:28
Alignment explanation
Indices: 63505513--63505582 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
63505503 AAATTTGTAC
63505513 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
63505541 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63505568 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63505583 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63505593 original size:27 final size:27
Alignment explanation
Indices: 63505513--63505594 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
63505503 AAATTTGTAC
* *
63505513 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
63505541 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
63505568 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
63505595 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63513391 original size:27 final size:28
Alignment explanation
Indices: 63513335--63513404 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
63513325 AAATTTGTAC
63513335 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
63513363 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63513390 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63513405 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63513415 original size:27 final size:27
Alignment explanation
Indices: 63513335--63513416 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
63513325 AAATTTGTAC
* *
63513335 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
63513363 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
63513390 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
63513417 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63518678 original size:26 final size:26
Alignment explanation
Indices: 63518593--63518715 Score: 159
Period size: 24 Copynumber: 4.9 Consensus size: 26
63518583 TCCTCTTTTA
*
63518593 ATAACTGGGGCCT-AGCCTCTTTTA--
1 ATAACTGGGGCATAAGCC-CTTTTATC
*
63518617 ATAACTGGGGCGTAAGCCCTTTTA--
1 ATAACTGGGGCATAAGCCCTTTTATC
63518641 ATAACTGGGGCATAAGCCCTTTTATC
1 ATAACTGGGGCATAAGCCCTTTTATC
* *
63518667 GTAACTAGGGCATAAGCCC-TTTATC
1 ATAACTGGGGCATAAGCCCTTTTATC
63518692 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63518716 CACTTCCTCC
Statistics
Matches: 89, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
24 41 0.46
25 27 0.30
26 21 0.24
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
ATAACTGGGGCATAAGCCCTTTTATC
Found at i:63518831 original size:20 final size:20
Alignment explanation
Indices: 63518764--63518830 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
63518754 TTATGAATAC
*
63518764 ATCATGTGCATATCATACAC
1 ATCATGTGCATATCATACAT
63518784 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
63518804 GTCATGTTCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63518824 ACCATGT
1 ATCATGT
63518831 TTATCAAAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63518909 original size:25 final size:25
Alignment explanation
Indices: 63518867--63518914 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63518857 ATATTTAAAC
* * *
63518867 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63518892 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63518915 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63522320 original size:29 final size:29
Alignment explanation
Indices: 63522287--63522379 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
63522277 TGACGAGATT
* *
63522287 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
63522316 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
63522345 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
63522374 GGCACT
1 GGCACT
63522380 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:63522392 original size:29 final size:29
Alignment explanation
Indices: 63522287--63522392 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
63522277 TGACGAGATT
* *
63522287 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
63522316 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
63522345 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
63522374 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
63522393 CGGAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:63530249 original size:29 final size:29
Alignment explanation
Indices: 63530216--63530308 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
63530206 TGACGAGATT
* *
63530216 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
63530245 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
63530274 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
63530303 GGCACT
1 GGCACT
63530309 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:63530321 original size:29 final size:29
Alignment explanation
Indices: 63530216--63530321 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
63530206 TGACGAGATT
* *
63530216 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
63530245 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
63530274 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
63530303 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
63530322 CGGAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:63535872 original size:42 final size:43
Alignment explanation
Indices: 63535765--63535906 Score: 137
Period size: 42 Copynumber: 3.3 Consensus size: 43
63535755 ATCTAAAATA
* * * * *
63535765 TCGTGTAAGACCGTGTCTGGGACACAGGCTTCAAT-TTGAGATT
1 TCGTGTAAGACCATGTATGGGACAGAGGCATCGATATTGA-ATT
* **
63535808 TACGTGTAAGACCATGTCTGGGACATCGGCATCG-TATCT-AATT
1 T-CGTGTAAGACCATGTATGGGACAGAGGCATCGATAT-TGAATT
*
63535851 TCGTGTAAGACCCTGTATGGGACAGAGGCATCGATATTGAATT
1 TCGTGTAAGACCATGTATGGGACAGAGGCATCGATATTGAATT
* *
63535894 ACATGTAAGACCA
1 TCGTGTAAGACCA
63535907 CGTCCGGGAT
Statistics
Matches: 82, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
42 29 0.35
43 23 0.28
44 29 0.35
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
TCGTGTAAGACCATGTATGGGACAGAGGCATCGATATTGAATT
Found at i:63545726 original size:25 final size:27
Alignment explanation
Indices: 63545694--63545768 Score: 111
Period size: 25 Copynumber: 2.9 Consensus size: 27
63545684 TGGACCCCAA
63545694 TTTATAAAATTACTGAAATACCCT-C-
1 TTTATAAAATTACTGAAATACCCTCCG
*
63545719 TTTGTAAAATTACTGAAATA-CCTCCGG
1 TTTATAAAATTACTGAAATACCCTCC-G
63545746 TTTATAAAATTACTGAAATACCC
1 TTTATAAAATTACTGAAATACCC
63545769 CTAGGTTGTG
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
24 3 0.07
25 20 0.45
27 19 0.43
28 2 0.05
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTATAAAATTACTGAAATACCCTCCG
Found at i:63545782 original size:27 final size:27
Alignment explanation
Indices: 63545700--63545874 Score: 121
Period size: 27 Copynumber: 6.6 Consensus size: 27
63545690 CCAATTTATA
* *
63545700 AAATTACTGAAATA-CCCT-CTTTGTA
1 AAATTACTGAAATACCCCTAGTTTGTG
* * *
63545725 AAATTACTGAAATACCTCC-GGTTTATA
1 AAATTACTGAAATACC-CCTAGTTTGTG
*
63545752 AAATTACTGAAATACCCCTAGGTTGTG
1 AAATTACTGAAATACCCCTAGTTTGTG
* * *
63545779 AAATTA-TCAAAATACCTCTAATTTGTG
1 AAATTACT-GAAATACCCCTAGTTTGTG
* * *
63545806 AAATGA-TCGAAATA-CCCTAATTTGAG
1 AAATTACT-GAAATACCCCTAGTTTGTG
** *
63545832 AAATTAAAGAAATA-CCCTCGATTTGTG
1 AAATTACTGAAATACCCCTAG-TTTGTG
*
63545859 AAATTATTGAAATACC
1 AAATTACTGAAATACC
63545875 TTGTAGGGTA
Statistics
Matches: 121, Mismatches: 21, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
25 14 0.12
26 29 0.24
27 77 0.64
28 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCCTAGTTTGTG
Found at i:63545834 original size:26 final size:26
Alignment explanation
Indices: 63545752--63545874 Score: 122
Period size: 27 Copynumber: 4.6 Consensus size: 26
63545742 CCGGTTTATA
**
63545752 AAATTA-CTGAAATACCCCTAGGTTGTG
1 AAATTATC-GAAATA-CCCTAATTTGTG
*
63545779 AAATTATCAAAATACCTCTAATTTGTG
1 AAATTATCGAAATACC-CTAATTTGTG
* *
63545806 AAATGATCGAAATACCCTAATTTGAG
1 AAATTATCGAAATACCCTAATTTGTG
** *
63545832 AAATTAAAGAAATACCCTCGATTTGTG
1 AAATTATCGAAATACCCT-AATTTGTG
*
63545859 AAATTATTGAAATACC
1 AAATTATCGAAATACC
63545875 TTGTAGGGTA
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 26 0.32
27 53 0.66
28 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (26 bp):
AAATTATCGAAATACCCTAATTTGTG
Found at i:63545964 original size:26 final size:26
Alignment explanation
Indices: 63545882--63545952 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
63545872 ACCTTGTAGG
63545882 GTAAAATGACTGTTTTGCCCTAAAGA
1 GTAAAATGACTGTTTTGCCCTAAAGA
*
63545908 GTAAAATGATTGTTTTGCCCTAAAGA
1 GTAAAATGACTGTTTTGCCCTAAAGA
63545934 GTAAAATGACTGTTTTGCC
1 GTAAAATGACTGTTTTGCC
63545953 GTTGTGGGTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (26 bp):
GTAAAATGACTGTTTTGCCCTAAAGA
Found at i:63554407 original size:17 final size:17
Alignment explanation
Indices: 63554385--63554418 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63554375 ATTTATTTAG
63554385 TTTACTTAGTTTAAAAT
1 TTTACTTAGTTTAAAAT
63554402 TTTACTTAGTTTAAAAT
1 TTTACTTAGTTTAAAAT
63554419 CTTAGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (17 bp):
TTTACTTAGTTTAAAAT
Found at i:63558365 original size:48 final size:47
Alignment explanation
Indices: 63558224--63558404 Score: 176
Period size: 48 Copynumber: 3.9 Consensus size: 47
63558214 CACATAGTAA
* *
63558224 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATC-ACA--
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCAATATC
* * * * * *
63558268 GAT--CAAAGACGATAGCCCAGCTATGGTCTTACATGATG-TCTCATATC
1 GATGCCAATG-CCATATCCCAGATATGGTCTTACATG-GGATC-AATATC
* *
63558315 GATGCCAATGCCATATCCTAGATATGATCTTACATGGGATCAAATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATC-AATATC
* *
63558363 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCA
63558405 CACATAACCC
Statistics
Matches: 108, Mismatches: 20, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
42 4 0.04
43 24 0.22
44 4 0.04
45 2 0.02
47 5 0.05
48 65 0.60
49 4 0.04
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCAATATC
Found at i:63558797 original size:68 final size:68
Alignment explanation
Indices: 63558688--63558814 Score: 245
Period size: 68 Copynumber: 1.9 Consensus size: 68
63558678 TTTTTTTATC
63558688 TATAGTATCAAATTTCACTTATTTAATTATCACATTGTTCAAATAAGTCCATAAATCATTTATTG
1 TATAGTATCAAATTTCACTTATTTAATTATCACATTGTTCAAATAAGTCCATAAATCATTTATTG
63558753 ATT
66 ATT
*
63558756 TATAGTATCAAATTTCACTTATTTAATTATCACATTGTTCAAATCAGTCCATAAATCAT
1 TATAGTATCAAATTTCACTTATTTAATTATCACATTGTTCAAATAAGTCCATAAATCAT
63558815 ACTTTGGAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 58 1.00
ACGTcount: A:0.37, C:0.15, G:0.06, T:0.43
Consensus pattern (68 bp):
TATAGTATCAAATTTCACTTATTTAATTATCACATTGTTCAAATAAGTCCATAAATCATTTATTG
ATT
Found at i:63561612 original size:26 final size:27
Alignment explanation
Indices: 63561555--63561678 Score: 130
Period size: 26 Copynumber: 4.7 Consensus size: 27
63561545 TTTGTAGCAG
*
63561555 TCATTTTACCACATAAGGGCAAAACAA
1 TCATTTTATCACATAAGGGCAAAACAA
*
63561582 TCATTTTATCACATAA-GGCCAAACAA
1 TCATTTTATCACATAAGGGCAAAACAA
* * *
63561608 TCATTTTA-CATATAAGGGTAAAACAG
1 TCATTTTATCACATAAGGGCAAAACAA
* * * *
63561634 TCATTTAATCA-ATTAGGGCACAACAG
1 TCATTTTATCACATAAGGGCAAAACAA
63561660 TCATTTTATCA-ATTAAGGG
1 TCATTTTATCACA-TAAGGG
63561679 TCTAGGCACA
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
25 6 0.07
26 54 0.66
27 22 0.27
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGCAAAACAA
Found at i:63564585 original size:46 final size:46
Alignment explanation
Indices: 63564490--63564649 Score: 223
Period size: 46 Copynumber: 3.5 Consensus size: 46
63564480 AGTGTCATGC
* * * * *
63564490 TGTCTTTCAACCATGGTTTTATTTA-TTCTCATCTTGATGCCATAG
1 TGTCTTTCAACCATGGTCTTATTCATTTTTCATCATGTTGCCATAG
*
63564535 TGTCTTTCAACCATGGTCTTATTCATTTTTCATCGTGTTGCCATAG
1 TGTCTTTCAACCATGGTCTTATTCATTTTTCATCATGTTGCCATAG
* * * *
63564581 TGTCTTTCAACCATGGTCTTATTCATTTTCCGTCATGTTACAATAG
1 TGTCTTTCAACCATGGTCTTATTCATTTTTCATCATGTTGCCATAG
63564627 TGTCTTTCAACCATGGTCTTATT
1 TGTCTTTCAACCATGGTCTTATT
63564650 TATATGATTT
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
45 23 0.22
46 81 0.78
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (46 bp):
TGTCTTTCAACCATGGTCTTATTCATTTTTCATCATGTTGCCATAG
Found at i:63564671 original size:91 final size:90
Alignment explanation
Indices: 63564482--63564692 Score: 221
Period size: 91 Copynumber: 2.3 Consensus size: 90
63564472 AATCAGAGAG
* * * * *
63564482 TGTCAT-GCTGTCTTTCAACCATGGTTTTATTTATTCTCATCTTGATGCCATAGTGTCTTTCAAC
1 TGTCATAG-TGTCTTTCAACCATGGTCTTATTCATTCTCATCATGATACAATAGTGTCTTTCAAC
* *
63564546 CATGGTCTTATTCATTTTTCATCGTGT
65 CATGGTCTTATTCATTATT-ATCGTGA
* * * *
63564573 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTCCGTCATGTTACAATAGTGTCTTTCAAC
1 TGTCATAGTGTCTTTCAACCATGGTCTTATTCATTCT-CATCATGATACAATAGTGTCTTTCAAC
*
63564638 CATGGTCTTATTTATATGATT-T-GTGA
65 CATGGTCTTATTCAT-T-ATTATCGTGA
* * *
63564664 TGTCATAGCGTCTTTCAGCTATGGTCTTA
1 TGTCATAGTGTCTTTCAACCATGGTCTTA
63564693 CTCGATAGAA
Statistics
Matches: 100, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
91 59 0.59
92 38 0.38
93 1 0.01
94 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.45
Consensus pattern (90 bp):
TGTCATAGTGTCTTTCAACCATGGTCTTATTCATTCTCATCATGATACAATAGTGTCTTTCAACC
ATGGTCTTATTCATTATTATCGTGA
Found at i:63564723 original size:45 final size:45
Alignment explanation
Indices: 63564660--63564786 Score: 130
Period size: 45 Copynumber: 2.8 Consensus size: 45
63564650 TATATGATTT
* * * *
63564660 GTGATGTCATAGCGTCTTTCAGCTATGGTCTTACTCGATAGAATC
1 GTGATGCCATAACATCTTTTAGCTATGGTCTTACTCGATAGAATC
* * ** * * *
63564705 GTGTTGCCATAACTTCTTTTAGCCGTGGTCGTACTTGATAGAATT
1 GTGATGCCATAACATCTTTTAGCTATGGTCTTACTCGATAGAATC
*
63564750 GTGATGCCATAACATCTTTTAG-TCATGATCTTACTCG
1 GTGATGCCATAACATCTTTTAGCT-ATGGTCTTACTCG
63564787 TTTCTGGTAT
Statistics
Matches: 64, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (45 bp):
GTGATGCCATAACATCTTTTAGCTATGGTCTTACTCGATAGAATC
Found at i:63566746 original size:49 final size:49
Alignment explanation
Indices: 63566674--63566848 Score: 233
Period size: 49 Copynumber: 3.5 Consensus size: 49
63566664 TGAGGTCACG
63566674 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCA
* * * * * * *
63566723 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTAG-TCGCA
* * *
63566774 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCA
*
63566823 TGTATAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
63566849 TGCGTACTAG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 64 0.60
50 6 0.06
51 37 0.35
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCA
Found at i:63566844 original size:100 final size:100
Alignment explanation
Indices: 63566669--63566855 Score: 329
Period size: 100 Copynumber: 1.9 Consensus size: 100
63566659 TATTGTGAGG
* * *
63566669 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTAGTCGCATGTATAGTACT
*
63566734 AAGTGTAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
*
63566769 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCGCATGTATAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTAGTCGCATGTATAGTACT
63566834 AAGTGCAGGCTACTATGCGTAC
66 AAGTGCAGGCTACTATGCGTAC
63566856 TAGATATCTT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTAGTCGCATGTATAGTACT
AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
Found at i:63572192 original size:23 final size:24
Alignment explanation
Indices: 63572154--63572198 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
63572144 TTTGCTCTTC
*
63572154 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
63572178 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
63572199 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:63572457 original size:55 final size:53
Alignment explanation
Indices: 63572326--63572521 Score: 173
Period size: 55 Copynumber: 3.6 Consensus size: 53
63572316 CTTACCATTT
* * *
63572326 CCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATA
* * * *
63572379 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATA
1 CCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATA
** * * *
63572434 CCATGTCTTGACATGG-CTTTACATGATATCCTTGCCTTA-GAAACCTTACCAGTTG
1 CCATGTCTTGACATGGTC-TTACATGGGATCCTTGCCTTATG-AA-CTCACCA-ATA
* * *
63572489 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGGATCCTT
63572522 AAACCCTAAT
Statistics
Matches: 117, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 36 0.31
54 8 0.07
55 68 0.58
56 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATA
Found at i:63577156 original size:14 final size:15
Alignment explanation
Indices: 63577119--63577160 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
63577109 AAATATGAAC
63577119 TATATATGATGAAATG
1 TATATATG-TGAAATG
*
63577135 TATA-ATGTGATA-G
1 TATATATGTGAAATG
63577148 TATATATGTGAAA
1 TATATATGTGAAA
63577161 GCCAAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:63577398 original size:41 final size:43
Alignment explanation
Indices: 63577284--63577420 Score: 190
Period size: 43 Copynumber: 3.2 Consensus size: 43
63577274 TAGGATTTCT
* *
63577284 GATATGTG-TTCTCGTGTAAGACCATGTCTAGGACATTGGCATC
1 GATATGTGATTAT-GTGTAAGACCATGTCTGGGACATTGGCATC
63577327 GATATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATC
1 GATATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATC
* * * *
63577370 G-TATTTGATT-TGTGTAAGACCCTATCTGGGACACTGGCATC
1 GATATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATC
63577411 GATATGTGAT
1 GATATGTGAT
63577421 AACACGTCTG
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
41 29 0.34
42 15 0.18
43 38 0.45
44 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
GATATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATC
Found at i:63584343 original size:28 final size:28
Alignment explanation
Indices: 63584297--63584365 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
63584287 TTTAAAACCC
*
63584297 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
63584324 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
63584352 TAGGCGTAATTTCG
1 TAGGGGTAATTTCG
63584366 TGATCTACGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.19, C:0.12, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:63586019 original size:20 final size:20
Alignment explanation
Indices: 63585996--63586033 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63585986 CACATCCAAA
*
63585996 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
63586016 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
63586034 ACGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:63586857 original size:47 final size:47
Alignment explanation
Indices: 63586803--63587117 Score: 477
Period size: 47 Copynumber: 6.7 Consensus size: 47
63586793 GATTTTATGC
* * * *
63586803 GATGAATGTGAATGTGTATATATGAGATAAGGTCGAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
63586850 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGT
63586899 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
63586946 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
*
63586993 GATGAATGTGAAAGTGTATAGATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * * *
63587040 GATGAATGTGAAAGTGTATATATGTGATAGGGCAGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
63587087 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
63587118 TCCCGAAAGG
Statistics
Matches: 247, Mismatches: 19, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
47 203 0.82
49 44 0.18
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:63587064 original size:25 final size:24
Alignment explanation
Indices: 63586895--63587067 Score: 74
Period size: 25 Copynumber: 7.3 Consensus size: 24
63586885 CTAATGGCCG
63586895 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGATGAATGTGAAAGTGTATA
* * ***
63586919 TATGTGAT-AAGGCCG-AA-TGGCCA
1 -ATGTGATGAATG-TGAAAGTGTATA
63586942 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGATGAATGTGAAAGTGTATA
* *** ****
63586966 TATGTGAT-AAGGCCTAA-TGGCCG
1 -ATGTGATGAATGTGAAAGTGTATA
63586989 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGATGAATGTGAAAGTGTATA
* * ***
63587013 GATGTGAT-AAGGCCG-AA-TGGCCA
1 -ATGTGATGAATG-TGAAAGTGTATA
63587036 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGATGAATGTGAAAGTGTATA
63587060 TATGTGAT
1 -ATGTGAT
63587068 AGGGCAGAGT
Statistics
Matches: 99, Mismatches: 36, Indels: 26
0.61 0.22 0.16
Matches are distributed among these distances:
22 23 0.23
23 23 0.23
24 23 0.23
25 30 0.30
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (24 bp):
ATGTGATGAATGTGAAAGTGTATA
Found at i:63598361 original size:68 final size:70
Alignment explanation
Indices: 63598289--63598486 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
63598279 ACACCCTGTA
* * * *
63598289 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
63598351 ATAAAT
65 ATAAAT
*
63598357 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
63598422 ATAAAT
65 ATAAAT
*
63598428 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
63598487 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:63598400 original size:41 final size:41
Alignment explanation
Indices: 63598355--63598472 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
63598345 TGAAAGATAA
63598355 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
63598396 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63598426 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63598467 ATGTAG
1 ATGTAG
63598473 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:63598412 original size:71 final size:71
Alignment explanation
Indices: 63598323--63598486 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63598313 GAGATGTATC
63598323 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63598388 AGGACA
66 AGGACA
63598394 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63598459 AGGACA
66 AGGACA
63598465 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
63598487 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:63621994 original size:80 final size:81
Alignment explanation
Indices: 63621837--63622003 Score: 257
Period size: 80 Copynumber: 2.1 Consensus size: 81
63621827 TTCGAATGAT
* * * *
63621837 ATCCGGGTTAATTCCTGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATT
1 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
* * *
63621902 TGTGCGAGTTACTA-A
66 TGCGCAAATTACTATA
63621917 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
63621982 TGCGCAAATTACTATA
66 TGCGCAAATTACTATA
63621998 A-CCGGG
1 ATCCGGG
63622004 CTATGTCCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 77 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (81 bp):
ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
TGCGCAAATTACTATA
Found at i:63622012 original size:40 final size:40
Alignment explanation
Indices: 63621837--63621983 Score: 258
Period size: 40 Copynumber: 3.7 Consensus size: 40
63621827 TTCGAATGAT
*
63621837 ATCCGGGTTAATTCCTGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
63621877 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
63621917 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
*
63621957 ATCCGGGTTAAGTCCCGAAGGCATTTG
1 ATCCGGGTTAATTCCCGAAGGCATTTG
63621984 CGCAAATTAC
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:63622029 original size:80 final size:80
Alignment explanation
Indices: 63621865--63622030 Score: 210
Period size: 80 Copynumber: 2.1 Consensus size: 80
63621855 AGGCATTTGT
* * * * * *
63621865 GCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATT
1 GCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCGCAAATTACTAAATCCGGGCTAATT
* * * *
63621930 CCCGAAGGCAATTGT
66 CCCAAAGACAATCGA
63621945 GCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCGCAAATTACTATAA-CCGGGCT-AT
1 GCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCGCAAATTACTA-AATCCGGGCTAAT
63622008 GTCCCAAAGACAATCGA
65 -TCCCAAAGACAATCGA
63622025 GCGAGT
1 GCGAGT
63622031 AGCTATATCT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 2 0.03
80 70 0.95
81 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (80 bp):
GCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGCGCAAATTACTAAATCCGGGCTAATT
CCCAAAGACAATCGA
Found at i:63634745 original size:40 final size:40
Alignment explanation
Indices: 63634681--63634832 Score: 119
Period size: 39 Copynumber: 3.9 Consensus size: 40
63634671 GCTACTCGTT
* * * * ***
63634681 CAAATGCCTCCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGAGACATAACCCGGATATCACAACCCGCA
* *
63634721 CAAATGCCTTCGAGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGAGACATAACCCGGATATCACAACCCGCA
* * * * * *
63634761 CAATTGCCTTCG-GGCTTAGCTCGGATATCACAACTCGCA
1 CAAATGCCTTCGAGACATAACCCGGATATCACAACCCGCA
* * * *
63634800 CAATTGCCTTCG-GGCTTAGCCCGGATATCACAA
1 CAAATGCCTTCGAGACATAACCCGGATATCACAA
63634833 TTCGCACATT
Statistics
Matches: 98, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 56 0.57
40 42 0.43
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGAGACATAACCCGGATATCACAACCCGCA
Found at i:63634796 original size:39 final size:39
Alignment explanation
Indices: 63634717--63634840 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
63634707 TATGGTAACC
* * *
63634717 CGCACAAATGCCTTCGAGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCG-GGCTTAGCCCGGATATCACAACT
*
63634757 CGCACAATTGCCTTCGGGCTTAGCTCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
63634796 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
63634835 CGCACA
1 CGCACA
63634841 TTCATACACA
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 63 0.81
40 15 0.19
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:63641649 original size:40 final size:41
Alignment explanation
Indices: 63641594--63641690 Score: 128
Period size: 40 Copynumber: 2.4 Consensus size: 41
63641584 CGACTACGAT
*
63641594 TGGCACTAAGTGTGCG-GTTTAATATAGCTTCGGCTATA-AA
1 TGGCACTAAGTGTGCGAG-TTAACATAGCTTCGGCTATATAA
* **
63641634 TGGCATTAAGTGTGCGAGTTGGCATAGCTTCGGCTATATAA
1 TGGCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATATAA
63641675 -GGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
63641691 TACTGACTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 47 0.94
41 3 0.06
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAGTTAACATAGCTTCGGCTATATAA
Found at i:63644467 original size:40 final size:40
Alignment explanation
Indices: 63644371--63644549 Score: 205
Period size: 40 Copynumber: 4.5 Consensus size: 40
63644361 CGAATGATGT
* * * * *
63644371 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
63644412 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
63644452 CCGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
63644492 CCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
63644532 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
63644550 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 22, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
40 92 0.79
41 24 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:63644505 original size:80 final size:81
Alignment explanation
Indices: 63644371--63644549 Score: 254
Period size: 80 Copynumber: 2.2 Consensus size: 81
63644361 CGAATGATGT
*
63644371 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
*
63644436 GTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAA
* * * *
63644452 CCGGGTTAAGTCCCGAAGGCATTTT-TGC-GAGTTACTAAATCCGGGTTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGC-TTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAAT
* *
63644515 TGTGCGAATTACTATAA
65 TGTGCGAATTACCAAAA
*
63644532 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
63644550 ACAATCGAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
80 61 0.70
81 22 0.25
82 4 0.05
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAA
Found at i:63644574 original size:80 final size:80
Alignment explanation
Indices: 63644405--63644589 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 80
63644395 GTGCTAAGTG
* * * *
63644405 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
* * *** *
63644470 GCATTTTTGCGAGTT
66 ACAATCGAGCGAGTC
* * *
63644485 ACTAAATCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
*
63644550 ACAATCGAGCTAGTC
66 ACAATCGAGCGAGTC
* *
63644565 GCTATATCC-GGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTT-AATTCCCGAAGG
63644590 TACGTGATTC
Statistics
Matches: 88, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 11 0.12
80 77 0.88
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (80 bp):
ACTAAATCCGGGTTAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:63646581 original size:43 final size:44
Alignment explanation
Indices: 63646505--63646622 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 44
63646495 GTCATATCCT
* *
63646505 AGATATGGTCTTACATGTTATCACAT-ATCGATGCCAATAG-CCC
1 AGATATGGTCTTACACGTAATCACATAATCGATGCCAAT-GTCCC
* * *
63646548 AGTTATGGTCTTACACGAAATCAAATAAT-GATGCCAATGTCCC
1 AGATATGGTCTTACACGTAATCACATAATCGATGCCAATGTCCC
* *
63646591 AGACATAGTCTTACACGTAATCACATAA-CGAT
1 AGATATGGTCTTACACGTAATCACATAATCGAT
63646623 AATCCTAATG
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
42 1 0.02
43 59 0.95
44 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (44 bp):
AGATATGGTCTTACACGTAATCACATAATCGATGCCAATGTCCC
Found at i:63655621 original size:40 final size:40
Alignment explanation
Indices: 63655566--63655735 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
63655556 AACATTGAAA
63655566 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63655606 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
63655646 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
63655685 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
63655726 CTATATCCGG
1 ATATATCCGG
63655736 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:63659894 original size:2 final size:2
Alignment explanation
Indices: 63659887--63659923 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
63659877 TAGACTAGTC
63659887 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
63659924 CACATGTCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:63661223 original size:101 final size:99
Alignment explanation
Indices: 63661005--63661205 Score: 269
Period size: 99 Copynumber: 2.0 Consensus size: 99
63660995 TATGTAGCCA
* * ** * *
63661005 AACTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCAGGTACACA
* *
63661070 TAGTATCCTGCACTTAGTACTACACACGTGACCT
66 TAGTAGCCTGCACTTAGTACTACACACGCGACCT
* *
63661104 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTTATCAGGTA-A
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACACGA-CCAA-TTATCAGGTACA
*
63661168 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
64 -CATAGTAGCCTGCACTTAGTACTACACACGCGACCT
63661205 A
1 A
63661206 GCTACATATA
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
99 42 0.48
100 4 0.05
101 42 0.48
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (99 bp):
AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCAGGTACACA
TAGTAGCCTGCACTTAGTACTACACACGCGACCT
Found at i:63661989 original size:30 final size:30
Alignment explanation
Indices: 63661953--63662013 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
63661943 TCCTTAACTC
63661953 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
63661983 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
63662013 A
1 A
63662014 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:63664087 original size:13 final size:13
Alignment explanation
Indices: 63664069--63664095 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63664059 GCTCGACAGG
63664069 GACACACCCGTGT
1 GACACACCCGTGT
63664082 GACACACCCGTGT
1 GACACACCCGTGT
63664095 G
1 G
63664096 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACACCCGTGT
Found at i:63668193 original size:55 final size:55
Alignment explanation
Indices: 63668134--63668240 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
63668124 TTAGTTCGAC
* * *
63668134 AGGTTCGACCAAGGGTGTTAGACACGGGCGTGTCGTACGCCCGTGCTGTTTTAAT
1 AGGTTCGACCAAGGGTCTTACACACGGGCGTATCGTACGCCCGTGCTGTTTTAAT
* * * * * *
63668189 AGGTTCGCCCATGGTTCTTCCACACGGGCGTATGGTACGCCCGTGTTGTTTT
1 AGGTTCGACCAAGGGTCTTACACACGGGCGTATCGTACGCCCGTGCTGTTTT
63668241 GGCAGGCTCA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 43 1.00
ACGTcount: A:0.15, C:0.24, G:0.31, T:0.30
Consensus pattern (55 bp):
AGGTTCGACCAAGGGTCTTACACACGGGCGTATCGTACGCCCGTGCTGTTTTAAT
Found at i:63680052 original size:43 final size:43
Alignment explanation
Indices: 63679991--63680102 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
63679981 TTCGAGCCTC
* * * **
63679991 GGCCTAGCAAGCTTTAATGCCGGTGAGATAATATCGGGCTTTG
1 GGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCTTCA
*
63680034 GGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCA
1 GGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCTTCA
* *
63680077 AGCCTAGCAGGC-AAAATGCCGGTGAA
1 GGCCTAGCAGGCTATAATGCCGGTGAA
63680103 TGAGTTCAGA
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
42 13 0.21
43 48 0.79
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (43 bp):
GGCCTAGCAGGCTATAATGCCGGTGAAATAATATCGGGCTTCA
Found at i:63693459 original size:13 final size:13
Alignment explanation
Indices: 63693441--63693504 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
63693431 AGTTTGGCAA
63693441 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
63693454 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
63693467 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
63693480 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
63693493 TGCTTTTGAAAA
1 TGCTTTTGAAAA
63693505 ATTTGGTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:63693470 original size:26 final size:26
Alignment explanation
Indices: 63693441--63693504 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
63693431 AGTTTGGCAA
63693441 TGCTTTTGAAAAGTGCTTTTGAGAAG
1 TGCTTTTGAAAAGTGCTTTTGAGAAG
* *
63693467 TGCTGTGGAAAAGTGCTTTTGAGAAG
1 TGCTTTTGAAAAGTGCTTTTGAGAAG
63693493 TGCTTTTGAAAA
1 TGCTTTTGAAAA
63693505 ATTTGGTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGCTTTTGAGAAG
Found at i:63698049 original size:27 final size:28
Alignment explanation
Indices: 63698019--63698079 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
63698009 CCACAAACTC
63698019 AGTGCTATATAATC-AACTCGCACACTT
1 AGTGCTATATAATCAAACTCGCACACTT
*
63698046 AGTGCTATATGATCAAACTCGCACACTT
1 AGTGCTATATAATCAAACTCGCACACTT
63698074 AGTGCT
1 AGTGCT
63698080 GTACAAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 13 0.41
28 19 0.59
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (28 bp):
AGTGCTATATAATCAAACTCGCACACTT
Found at i:63702761 original size:15 final size:15
Alignment explanation
Indices: 63702741--63702805 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
63702731 GTATCTTGGG
63702741 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
63702756 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
63702771 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
63702786 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
63702800 TTTCTT
1 TTTCTT
63702806 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:63702773 original size:30 final size:31
Alignment explanation
Indices: 63702737--63702805 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
63702727 TATCGTATCT
63702737 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
63702767 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
63702797 -GGTTTTCTT
1 TGGGTTTCTT
63702806 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:63704115 original size:13 final size:13
Alignment explanation
Indices: 63704097--63704160 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
63704087 AGTTTGGCAA
63704097 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
63704110 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
63704123 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
63704136 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
63704149 TGCTTTTGAAAA
1 TGCTTTTGAAAA
63704161 ATTTGGTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:63704126 original size:26 final size:26
Alignment explanation
Indices: 63704097--63704160 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
63704087 AGTTTGGCAA
63704097 TGCTTTTGAAAAGTGCTTTTGAGAAG
1 TGCTTTTGAAAAGTGCTTTTGAGAAG
* *
63704123 TGCTGTGGAAAAGTGCTTTTGAGAAG
1 TGCTTTTGAAAAGTGCTTTTGAGAAG
63704149 TGCTTTTGAAAA
1 TGCTTTTGAAAA
63704161 ATTTGGTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGCTTTTGAGAAG
Found at i:63705754 original size:50 final size:49
Alignment explanation
Indices: 63705633--63705819 Score: 216
Period size: 50 Copynumber: 3.8 Consensus size: 49
63705623 TGAGGTCGCA
* * * *
63705633 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
63705684 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
63705734 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
63705783 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
63705820 TAGCTTCGGC
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 40 0.34
50 43 0.36
51 31 0.26
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:63711077 original size:27 final size:27
Alignment explanation
Indices: 63710992--63711148 Score: 221
Period size: 27 Copynumber: 5.9 Consensus size: 27
63710982 AAATACTTTG
*
63710992 GTTTATAAAATTACCAAAATA-CCCT-
1 GTTTGTAAAATTACCAAAATACCCCTA
*
63711017 GCTTTGTAAAATTACTAAAATA-CCCTA
1 G-TTTGTAAAATTACCAAAATACCCCTA
63711044 GTTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
*
63711071 GTTTGTAAAATTATCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
63711098 GTTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
* * **
63711125 ATTTGTGAAATTACTGAAATACCC
1 GTTTGTAAAATTACCAAAATACCC
63711149 TCGACCTGTA
Statistics
Matches: 120, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
25 1 0.01
26 41 0.34
27 78 0.65
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
GTTTGTAAAATTACCAAAATACCCCTA
Found at i:63711217 original size:27 final size:27
Alignment explanation
Indices: 63711198--63711518 Score: 414
Period size: 27 Copynumber: 11.9 Consensus size: 27
63711188 ATTACCAAAG
63711198 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
63711225 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
63711252 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
63711279 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
63711306 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
63711333 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * *
63711360 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* *
63711387 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
63711414 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
63711441 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
63711468 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
63711495 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTATAGAATTACCG
63711519 AAATACCCTC
Statistics
Matches: 264, Mismatches: 26, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 260 0.98
28 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:63711525 original size:27 final size:27
Alignment explanation
Indices: 63710993--63711581 Score: 219
Period size: 27 Copynumber: 21.9 Consensus size: 27
63710983 AATACTTTGG
* *
63710993 TTTATAAAATTACCAAAATACCCT-GC
1 TTTATAAAATTACCGAAATACCCTCGA
* ** *
63711019 TTTGTAAAATTACTAAAATACCCTAG-
1 TTTATAAAATTACCGAAATACCCTCGA
* * *
63711045 TTTGTAAAATTACCAAAATACCC-CTA
1 TTTATAAAATTACCGAAATACCCTCGA
* * * *
63711071 GTTTGTAAAATTATCAAAATACCC-CTA
1 -TTTATAAAATTACCGAAATACCCTCGA
* * *
63711098 GTTTGTAAAATTACCAAAATACCC-CTAA
1 -TTTATAAAATTACCGAAATACCCTC-GA
* * *
63711126 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
** * **
63711153 CCTGTAAAATTATTGAAATACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* *
63711180 CTTGTAAAATTACC-AAAGTACCCTCGA
1 TTTATAAAATTACCGAAA-TACCCTCGA
* ***
63711207 TTTATAGAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* ***
63711234 TTTGTAAAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* ***
63711261 TTTATAGAATTACCGTTTTACCCTC-A
1 TTTATAAAATTACCGAAATACCCTCGA
* * * **
63711287 GTTTACAGAATTA-CTATTTTACCCTCGA
1 -TTTATAAAATTACCGA-AATACCCTCGA
* *** *
63711315 TTTATAGAATTACCGTTTTACCC-CTAA
1 TTTATAAAATTACCGAAATACCCTC-GA
* * ***
63711342 TTTACATAATTACCGTTTTACCC-CTGA
1 TTTATAAAATTACCGAAATACCCTC-GA
* * * ***
63711369 TTTACATAATTATCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * * ***
63711396 CTTACAGAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * ***
63711423 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * *** *
63711450 TTTATAGAATTACTGTTTTACCCTTGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * * ***
63711477 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* *
63711504 TTTACAAAATTACCGAAATACCCTCAA
1 TTTATAAAATTACCGAAATACCCTCGA
* *
63711531 TTTGTAAAATTACCAAAATACCC-CTGA
1 TTTATAAAATTACCGAAATACCCTC-GA
* * *
63711558 TTTACAAAGTTACAGAAATACCCT
1 TTTATAAAATTACCGAAATACCCT
63711582 TGACTTTTTA
Statistics
Matches: 484, Mismatches: 64, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
26 51 0.11
27 428 0.88
28 5 0.01
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTATAAAATTACCGAAATACCCTCGA
Found at i:63712948 original size:25 final size:25
Alignment explanation
Indices: 63712919--63712966 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63712909 TTATAATATG
* * *
63712919 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63712944 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63712967 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63713035 original size:20 final size:20
Alignment explanation
Indices: 63713010--63713068 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
63713000 TAAATATGGT
63713010 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
63713030 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
63713050 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
63713069 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:63713146 original size:24 final size:24
Alignment explanation
Indices: 63713119--63713261 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
63713109 GAGGAAGTGA
63713119 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
63713143 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
63713167 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
63713190 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
63713214 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
63713238 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63713262 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:63713212 original size:47 final size:47
Alignment explanation
Indices: 63713119--63713261 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
63713109 GAGGAAGTGA
63713119 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
63713167 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
63713214 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
63713262 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:63713235 original size:71 final size:72
Alignment explanation
Indices: 63713119--63713262 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
63713109 GAGGAAGTGA
*
63713119 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
63713182 CCAGTTAT
65 CCAGTTAT
** * *
63713190 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
63713255 CAGTTAT
66 CAGTTAT
63713262 A
1 A
63713263 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:63713488 original size:31 final size:31
Alignment explanation
Indices: 63713453--63713547 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
63713443 CGTTTACAGT
63713453 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63713484 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
63713515 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63713546 AA
1 AA
63713548 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63717490 original size:24 final size:24
Alignment explanation
Indices: 63717439--63717533 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
63717429 GCTTTATCAT
*
63717439 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
63717464 ATAACTGGGGAAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63717488 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
63717511 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63717534 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.37
24 28 0.44
25 12 0.19
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63717514 original size:23 final size:23
Alignment explanation
Indices: 63717460--63717532 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
63717450 CCTAGCCTCT
* *
63717460 TTTAATAACTGGGGAAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
63717483 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
63717507 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
63717530 TTT
1 TTT
63717533 TGCACTTCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:63717608 original size:20 final size:20
Alignment explanation
Indices: 63717583--63717642 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
63717573 TTATGAATAC
63717583 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
63717603 ATCATGTGCATAGCGTACAT
1 ATCATGTGCATATCATACAT
* *
63717623 GTCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
63717643 CCCATGTCTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63720557 original size:43 final size:44
Alignment explanation
Indices: 63720490--63720609 Score: 122
Period size: 43 Copynumber: 2.8 Consensus size: 44
63720480 TAACACATAT
* * * * * *
63720490 GATGCCACTGTCCCAAACAGGGTCTTACATGA-AATC-GATTAAC
1 GATGCCAATGTCCCAGACATGGTCTTACATCATAATCTCAAT-AC
*
63720533 GATGCCAATGTCCTAGACATGGTCTTACA-CATAATCTCAATAC
1 GATGCCAATGTCCCAGACATGGTCTTACATCATAATCTCAATAC
* *
63720576 AATGCCAATGTCCCAGACATAGTCTTACAT-ATAA
1 GATGCCAATGTCCCAGACATGGTCTTACATCATAA
63720610 CCACATCTCG
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.02
43 61 0.95
44 2 0.03
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (44 bp):
GATGCCAATGTCCCAGACATGGTCTTACATCATAATCTCAATAC
Found at i:63724279 original size:27 final size:27
Alignment explanation
Indices: 63724218--63724396 Score: 238
Period size: 27 Copynumber: 6.7 Consensus size: 27
63724208 TTTGGTTTAC
*
63724218 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACTAAAATACCCCTAG-TTTGT
* * *
63724244 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACTAAAATACCCCTAGTTTGT
63724271 AAAATTACTAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATACCCCTAGTTTGT
*
63724298 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATACCCCTAGTTTGT
63724325 AAAATTA-TCAAAATACCCCTAGTTTGT
1 AAAATTACT-AAAATACCCCTAGTTTGT
* *
63724352 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACTAAAATACCCCTAGTTTGT
* *
63724379 GAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
63724397 TCGACCTGTA
Statistics
Matches: 136, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
26 14 0.10
27 121 0.89
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTAGTTTGT
Found at i:63724407 original size:81 final size:81
Alignment explanation
Indices: 63724218--63724444 Score: 230
Period size: 81 Copynumber: 2.8 Consensus size: 81
63724208 TTTGGTTTAC
* * * * * *
63724218 AAAATTACCAAAATA-CCC-TGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACT
1 AAAATTACCAAAATACCCCGAGC-CTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACC
*
63724280 AAAATACCCCTAGTTTGT
64 AAAATACCCCTAATTTGT
* **
63724298 AAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
63724363 AATACCCCTAATTTGT
66 AATACCCCTAATTTGT
* ** ** * *
63724379 GAAATTACTGAAATACCCTCGA-CCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACC
1 AAAATTACCAAAATACCC-CGAGCCTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTACC
63724442 AAA
64 AAA
63724445 GTACTCTCGA
Statistics
Matches: 125, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 20 0.16
81 101 0.81
82 4 0.03
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:63724453 original size:27 final size:26
Alignment explanation
Indices: 63724218--63724454 Score: 117
Period size: 27 Copynumber: 8.8 Consensus size: 26
63724208 TTTGGTTTAC
63724218 AAAATTACCAAAATACCCT-G-CTTTGT
1 AAAATTACC-AAATACCCTCGAC-TTGT
* * ** *
63724244 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTAC-CAAATACCCTCGACTTGT
* * *
63724271 AAAATTACTAAAATACCC-CTAGTTTGT
1 AAAATTAC-CAAATACCCTCGA-CTTGT
* *
63724298 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACC-AAATACCCTCGA-CTTGT
* * *
63724325 AAAATTATCAAAATACCC-CTAGTTTGT
1 AAAATTA-CCAAATACCCTCGA-CTTGT
* *
63724352 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACC-AAATACCCTC-GACTTGT
* * *
63724379 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTAC-CAAATACCCTCGACTTGT
**
63724406 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTA-CCAAATACCCTCGACTTGT
*
63724433 AAAATTACCAAAGTACTCTCGA
1 AAAATTACCAAA-TACCCTCGA
63724455 TTTACAGAAT
Statistics
Matches: 177, Mismatches: 22, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
26 21 0.12
27 153 0.86
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (26 bp):
AAAATTACCAAATACCCTCGACTTGT
Found at i:63724846 original size:27 final size:27
Alignment explanation
Indices: 63724450--63724845 Score: 528
Period size: 27 Copynumber: 14.7 Consensus size: 27
63724440 CCAAAGTACT
63724450 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
63724477 CTC-AGTTTACAGAATTATTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
63724504 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
63724531 CTTGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
63724558 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
63724585 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
63724612 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
63724639 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
63724666 C-CTAATTTACATAATTACCGTTTTACC
1 CTC-GATTTACAGAATTACCGTTTTACC
* * * *
63724693 CCCGATTTACATAATTATCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
63724720 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
63724747 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
63724774 CTCGATTTATAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
63724801 CTTGATTTACAAAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
63724828 CTCGATTTACAAAATTAC
1 CTCGATTTACAGAATTAC
63724846 TAAAATACCC
Statistics
Matches: 330, Mismatches: 33, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.01
27 324 0.98
28 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:63724882 original size:81 final size:81
Alignment explanation
Indices: 63724419--63724889 Score: 275
Period size: 81 Copynumber: 5.8 Consensus size: 81
63724409 ATTATTGAAA
* ** * * * ***
63724419 TACCCTCGACTTGTAAAATTACCAAAGTACTCTCGATTTACAGAATTACCGTTTTACCCTC-AGT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGA-T
* **
63724483 TTACAGAATTATTGTTT
65 TTACAAAATTACCGTTT
* * ***** * ***
63724500 TACCCTTGATTTACAGAATTACTGTTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATT
**
63724565 TGTAAAATTACCGTTT
66 TACAAAATTACCGTTT
* **** * *****
63724581 TACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGA-TTTATAGAATTACCGCAATACCCTCGAT
*
63724645 TTACAGAATTACCGTTT
65 TTACAAAATTACCGTTT
* * **** * * * * ****
63724662 TACCC-CTAATTTACATAATTACCGTTTTACCCCCGATTTACATAATTATCATTTTACCCTCGAT
1 TACCCTC-GATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGAT
*
63724726 TTACAGAATTACCGTTT
65 TTACAAAATTACCGTTT
* *** * *** *
63724743 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATT
*
63724808 TACAAAATTACTGTTT
66 TACAAAATTACCGTTT
* * * * *
63724824 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGT-GAAATTACCGCAATACCCTCAAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAG-AATTACCGCAATACCCTCGAT
63724888 TT
65 TT
63724890 GTAAAACTAC
Statistics
Matches: 325, Mismatches: 59, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
80 3 0.01
81 319 0.98
82 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATT
TACAAAATTACCGTTT
Found at i:63734873 original size:20 final size:20
Alignment explanation
Indices: 63734850--63734937 Score: 81
Period size: 20 Copynumber: 4.5 Consensus size: 20
63734840 TTGCACAAAT
*
63734850 GTGCCCCTATTAGCACTTCG
1 GTGCCCCTGTTAGCACTTCG
*
63734870 GTGCCCTTGTATA-CACTTCG
1 GTGCCCCTGT-TAGCACTTCG
* * * *
63734890 GTGTCCCTGTTTGCA-ATCT
1 GTGCCCCTGTTAGCACTTCG
* *
63734909 GTGCCCCTGTTCGCACTTTG
1 GTGCCCCTGTTAGCACTTCG
63734929 GTGCCCCTG
1 GTGCCCCTG
63734938 ATTGCACATG
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
19 16 0.30
20 35 0.66
21 2 0.04
ACGTcount: A:0.10, C:0.33, G:0.23, T:0.34
Consensus pattern (20 bp):
GTGCCCCTGTTAGCACTTCG
Found at i:63734913 original size:39 final size:40
Alignment explanation
Indices: 63734850--63734960 Score: 102
Period size: 39 Copynumber: 2.8 Consensus size: 40
63734840 TTGCACAAAT
* * *
63734850 GTGCCCCT-ATTAGCACTTCGGTGCCCTTGTAT-ACACTTCG
1 GTGCCCCTGATT-GCACATCTGTGCCCCTGT-TCACACTTCG
* * * *
63734890 GTGTCCCTGTTTGCA-ATCTGTGCCCCTGTTCGCACTTTG
1 GTGCCCCTGATTGCACATCTGTGCCCCTGTTCACACTTCG
* *
63734929 GTGCCCCTGATTGCACATGTGTGCCCATGTTC
1 GTGCCCCTGATTGCACATCTGTGCCCCTGTTC
63734961 TGCATCTACG
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
38 1 0.02
39 30 0.53
40 24 0.42
41 2 0.04
ACGTcount: A:0.12, C:0.32, G:0.23, T:0.34
Consensus pattern (40 bp):
GTGCCCCTGATTGCACATCTGTGCCCCTGTTCACACTTCG
Found at i:63734952 original size:20 final size:19
Alignment explanation
Indices: 63734831--63734959 Score: 64
Period size: 20 Copynumber: 6.6 Consensus size: 19
63734821 AAATGAAAAA
* **
63734831 GTGCCCTTGTTGCACAAAT
1 GTGCCCCTGTTGCACATCT
* * *
63734850 GTGCCCCTATTAGCACTTCG
1 GTGCCCCTGTT-GCACATCT
* * * *
63734870 GTGCCCTTGTATACACTTCG
1 GTGCCCCTGT-TGCACATCT
*
63734890 GTGTCCCTGTTTGCA-ATCT
1 GTGCCCCTG-TTGCACATCT
*
63734909 GTGCCCCTGTTCGCAC-TTT
1 GTGCCCCTGTT-GCACATCT
*
63734928 GGTGCCCCTGATTGCACATGT
1 -GTGCCCCTG-TTGCACATCT
*
63734949 GTGCCCATGTT
1 GTGCCCCTGTT
63734960 CTGCATCTAC
Statistics
Matches: 84, Mismatches: 18, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
18 2 0.02
19 26 0.31
20 50 0.60
21 6 0.07
ACGTcount: A:0.13, C:0.30, G:0.22, T:0.34
Consensus pattern (19 bp):
GTGCCCCTGTTGCACATCT
Found at i:63737249 original size:40 final size:39
Alignment explanation
Indices: 63737204--63737411 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
63737194 CGGAATACAA
*
63737204 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
63737244 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
63737284 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
63737324 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
63737364 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
63737404 CCGGATAT
1 CCGGATAT
63737412 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63737344 original size:80 final size:80
Alignment explanation
Indices: 63737204--63737410 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
63737194 CGGAATACAA
* * *
63737204 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
63737268 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
63737284 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
63737348 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
63737364 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
63737411 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:63746052 original size:27 final size:26
Alignment explanation
Indices: 63746004--63746062 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
63745994 GTGAGGCTGC
*
63746004 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
63746031 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
63746057 -AGATAT
1 CAGATAT
63746063 ATATATATGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 6 0.21
26 1 0.04
27 21 0.75
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63746151 original size:27 final size:26
Alignment explanation
Indices: 63746103--63746154 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63746093 GCGTGGCTGC
*
63746103 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63746129 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
63746155 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63753524 original size:27 final size:26
Alignment explanation
Indices: 63753476--63753527 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63753466 GCGAGGCTGC
*
63753476 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63753502 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
63753528 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63760400 original size:26 final size:26
Alignment explanation
Indices: 63760371--63760430 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
63760361 TCCCTTTGAA
* * *
63760371 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
63760397 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
63760425 CCATTC
1 TCATTC
63760431 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:63760456 original size:28 final size:28
Alignment explanation
Indices: 63760385--63760456 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 28
63760375 TCGATATTTT
**
63760385 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTACCATTCTCAATATCTC
* *
63760413 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTACCATTCTCAATATCTC
* * *
63760441 GTATACTGAGTACCAT
1 GCACACTAAGTACCAT
63760457 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTACCATTCTCAATATCTC
Found at i:63766438 original size:34 final size:33
Alignment explanation
Indices: 63766390--63766493 Score: 127
Period size: 34 Copynumber: 3.0 Consensus size: 33
63766380 GCGAATACAT
* *
63766390 TCTGGGCCTAAGCCCATATCAATAACAGTAGCAG
1 TCTGGGCCTTAGCCCAT-TCAGTAACAGTAGCAG
* *
63766424 TTTGGGCCTTAGCCCACTTCAGTAACAGTAGCAA
1 TCTGGGCCTTAGCCCA-TTCAGTAACAGTAGCAG
*
63766458 TCTGGGCCTTAGCCCATTTCAGTAATAGTAGTCAG
1 TCTGGGCCTTAGCCCA-TTCAGTAACAGTAG-CAG
63766493 T
1 T
63766494 GCAGTAACCA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
34 56 0.93
35 4 0.07
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (33 bp):
TCTGGGCCTTAGCCCATTCAGTAACAGTAGCAG
Found at i:63766991 original size:27 final size:27
Alignment explanation
Indices: 63766905--63766993 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
63766895 AGGTGTTACA
* *
63766905 GTCATTTTACCGTA-CAGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTTG
** *
63766931 GTCATTGCACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTTG
*
63766958 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTTG
63766985 GTCATTTTA
1 GTCATTTTA
63766994 TCACATAAGG
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 11 0.21
27 42 0.79
ACGTcount: A:0.18, C:0.17, G:0.24, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTTG
Found at i:63767004 original size:27 final size:27
Alignment explanation
Indices: 63766920--63767004 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
63766910 TTTACCGTAC
* ** * *
63766920 AGGGTATTTTGGTCATTGCACCCTATG
1 AGGGTATTTCGGTCATTTTACACTATA
* * * *
63766947 GGGGTATTTTGGTCATTTTACCCTATG
1 AGGGTATTTCGGTCATTTTACACTATA
63766974 AGGGTATTTCGGTCATTTTATCAC-ATA
1 AGGGTATTTCGGTCATTTTA-CACTATA
63767001 AGGG
1 AGGG
63767005 AAAAATCATC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 48 0.96
28 2 0.04
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTCATTTTACACTATA
Found at i:63767027 original size:28 final size:27
Alignment explanation
Indices: 63766986--63767127 Score: 196
Period size: 27 Copynumber: 5.3 Consensus size: 27
63766976 GGTATTTCGG
*
63766986 TCATTTTATCACATAAGGGAAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCA
*
63767013 TCATTTTTATCACATAAGGGCAAAATCG
1 TCA-TTTTATCACATAAGGGCAAAATCA
* *
63767041 CCA-TTTATCATATAAGGGCAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCA
*
63767067 TCATTTTATCACATAAGGGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCA
* *
63767094 TCATTTTATCACGTAAGGGTAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCA
*
63767121 TTATTTT
1 TCATTTT
63767128 TATCGACTAC
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
26 23 0.23
27 54 0.53
28 24 0.24
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGCAAAATCA
Found at i:63767048 original size:54 final size:55
Alignment explanation
Indices: 63766987--63767131 Score: 222
Period size: 54 Copynumber: 2.7 Consensus size: 55
63766977 GTATTTCGGT
63766987 CATTTTATCACATAAGGGAAAAATCATCATTTTTATCACATAAGGGCAAAATCGC
1 CATTTTATCACATAAGGGAAAAATCATCATTTTTATCACATAAGGGCAAAATCGC
* * *
63767042 CA-TTTATCATATAAGGGCAAAATCATCA-TTTTATCACATAAGGGCAAAATCGT
1 CATTTTATCACATAAGGGAAAAATCATCATTTTTATCACATAAGGGCAAAATCGC
* * *
63767095 CATTTTATCACGTAAGGGTAAAATCATTATTTTTATC
1 CATTTTATCACATAAGGGAAAAATCATCATTTTTATC
63767132 GACTACCGTC
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 26 0.32
54 46 0.57
55 9 0.11
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (55 bp):
CATTTTATCACATAAGGGAAAAATCATCATTTTTATCACATAAGGGCAAAATCGC
Found at i:63773394 original size:66 final size:67
Alignment explanation
Indices: 63773265--63773394 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
63773255 GGGATGTATC
*
63773265 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
63773330 AGGACA
62 AGGACA
* *
63773336 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
63773395 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:63782533 original size:30 final size:30
Alignment explanation
Indices: 63782499--63782558 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
63782489 CTTTAATACG
*
63782499 AACTTTGGCAAAATTAC-CATTTTTCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
63782529 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
63782559 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:63783414 original size:33 final size:33
Alignment explanation
Indices: 63783370--63783450 Score: 108
Period size: 33 Copynumber: 2.5 Consensus size: 33
63783360 GATATTACAG
* *
63783370 ACTGTATTGATACTGAATAGGGCTTTGGCCTAA
1 ACTGTACTGATACTAAATAGGGCTTTGGCCTAA
* *
63783403 ACTGTACTGATACTAAATAGGGCTTTGGCCCAG
1 ACTGTACTGATACTAAATAGGGCTTTGGCCTAA
* *
63783436 TCTATACTGATACTA
1 ACTGTACTGATACTA
63783451 TGTTATTCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (33 bp):
ACTGTACTGATACTAAATAGGGCTTTGGCCTAA
Found at i:63785024 original size:23 final size:25
Alignment explanation
Indices: 63784979--63785024 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
63784969 GTCTTTCAGT
**
63784979 AATTCAAGTCGTCTTCTTTGTCACA
1 AATTCAAGTCGTCTTCTGAGTCACA
63785004 AATTCAAGTC-T-TTCTGAGTCA
1 AATTCAAGTCGTCTTCTGAGTCA
63785025 TTAAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 1 0.05
25 10 0.53
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (25 bp):
AATTCAAGTCGTCTTCTGAGTCACA
Found at i:63786887 original size:24 final size:24
Alignment explanation
Indices: 63786860--63787066 Score: 333
Period size: 24 Copynumber: 8.6 Consensus size: 24
63786850 CTTATTATGT
* * *
63786860 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
63786884 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
63786908 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63786932 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
63786956 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
63786980 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
63787004 TTGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
63787028 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
63787052 TCGCACACATAGTGC
1 TCGCACACATAGTGC
63787067 ATTTGAGATA
Statistics
Matches: 175, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 175 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:63791395 original size:40 final size:40
Alignment explanation
Indices: 63791340--63791555 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
63791330 CGGATGATAA
*
63791340 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
63791380 CCGGGCTAAGCCCCGAAGGCATTTGCTGCGA-TTA--ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTGACTATAT
*
63791418 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
63791458 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
63791498 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-ACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
63791537 CC-GGCTAAATCCCGAAGGC
1 CCGGGCTAAGTCCCGAAGGC
63791556 TTGGTTTGGG
Statistics
Matches: 165, Mismatches: 6, Indels: 12
0.90 0.03 0.07
Matches are distributed among these distances:
37 5 0.03
38 45 0.27
39 10 0.06
40 101 0.61
41 4 0.02
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:63791473 original size:78 final size:79
Alignment explanation
Indices: 63791340--63791555 Score: 325
Period size: 78 Copynumber: 2.8 Consensus size: 79
63791330 CGGATGATAA
* * *
63791340 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTT
63791404 GCTGCGA-TTA-ATAT
65 G-TGCGAGTTACATAT
63791418 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
63791483 TGCGAGTTACTATAT
66 TGCGAGTTAC-ATAT
* *
63791498 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATATCC-GGCTAAATCCCGAAGGC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
63791556 TTGGTTTGGG
Statistics
Matches: 129, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
77 5 0.04
78 79 0.61
79 11 0.09
80 34 0.26
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACATAT
Found at i:63791550 original size:118 final size:118
Alignment explanation
Indices: 63791340--63791555 Score: 330
Period size: 118 Copynumber: 1.8 Consensus size: 118
63791330 CGGATGATAA
*
63791340 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCCGAAGGCATTTG
* * *
63791405 CTGCGATTAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66 CAGCGAGTAATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
63791458 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGCCCCGAAGGCATTT
63791522 G-AGCGAGTACTATATCC-GGCTAAATCCCGAAGGC
65 GCAGCGAGTA--ATATCCGGGCTAAATCCCGAAGGC
63791556 TTGGTTTGGG
Statistics
Matches: 89, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
117 8 0.09
118 75 0.84
119 6 0.07
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCCGAAGGCATTTG
CAGCGAGTAATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63798894 original size:40 final size:40
Alignment explanation
Indices: 63798839--63799055 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
63798829 CGGATGATAA
* *
63798839 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
63798879 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
63798919 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63798959 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63798998 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
63799038 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
63799056 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 54 0.32
40 112 0.67
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63801766 original size:17 final size:17
Alignment explanation
Indices: 63801744--63801786 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
63801734 ATTTCATTTA
**
63801744 AAATGTCAATTTCCATC
1 AAATGTCAATTAACATC
*
63801761 AAATGTCCATTAACATC
1 AAATGTCAATTAACATC
63801778 AAAT-TCAAT
1 AAATGTCAAT
63801787 ACAATCATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (17 bp):
AAATGTCAATTAACATC
Found at i:63805440 original size:56 final size:56
Alignment explanation
Indices: 63805345--63805550 Score: 281
Period size: 56 Copynumber: 3.7 Consensus size: 56
63805335 GAAGTATATG
* * **
63805345 TGGCATTGATATGTGA--CTGAGATAAATGTACGAGTAAGTCCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAGTCCACGTTTAATACGT
* *
63805399 TGGCATCGATCTGTGACTCTGATATATGTGTACGATTAAGTCCACGTTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAGTCCACGTTTAATACGT
** * * * *
63805455 TGGCATCGATATGTGACTCCAATATATGTGTGCAAGTAAGACCACGTTTAATACAT
1 TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAGTCCACGTTTAATACGT
*
63805511 TGGCATCGATATATGACTCTGATATATGTGTACGAGTAAG
1 TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAG
63805551 ACCCTGTCCG
Statistics
Matches: 131, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
54 14 0.11
56 117 0.89
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCTGATATATGTGTACGAGTAAGTCCACGTTTAATACGT
Found at i:63805578 original size:112 final size:109
Alignment explanation
Indices: 63805344--63805582 Score: 257
Period size: 112 Copynumber: 2.2 Consensus size: 109
63805334 GGAAGTATAT
* * * *
63805344 GTGGCATTGATATGTGACTGAGATAAATGTACGAGTAAGTCCACGTTTAATACGTTGGCATCGAT
1 GTGGCATTGATATGTGACTCAGATAAATGTACAAGTAAGACCACGTTTAATACATTGGCATCGAT
* * * * ** *
63805409 CTGTGACTCTGATATATGTGTACGATTAAGTCCACGTTTAATAC
66 ATATGACTCTGATATATGTGTACGAGTAAGACCACGTCCAAGAC
* * *
63805453 GTTGGCATCGATATGTGACTCCA-ATATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCAT
1 G-TGGCATTGATATGTGACT-CAGATA-A-ATGTACAAGTAAGACCACGTTTAATACATTGGCAT
** *
63805517 CGATATATGACTCTGATATATGTGTACGAGTAAGACC-CTGTCCGGGGC
62 CGATATATGACTCTGATATATGTGTACGAGTAAGACCAC-GTCCAAGAC
63805565 AGTGGCATTGATATGTGA
1 -GTGGCATTGATATGTGA
63805583 TTACATGTAA
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
109 1 0.01
110 20 0.19
111 3 0.03
112 81 0.76
113 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (109 bp):
GTGGCATTGATATGTGACTCAGATAAATGTACAAGTAAGACCACGTTTAATACATTGGCATCGAT
ATATGACTCTGATATATGTGTACGAGTAAGACCACGTCCAAGAC
Found at i:63808578 original size:48 final size:46
Alignment explanation
Indices: 63808446--63808617 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
63808436 TGTGTGAGCT
* *
63808446 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACTCGAGATGATAAGCC
* * * * *
63808492 AGTGTAACACATGTTTGAGACATGCATCGGCTACGAGATGAT-AGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACT-CGAGATGATAAGCC
* *
63808538 AGTGTAAGAACCATGTCTGGGACATCGCATCGACTTGAGAT-ATGAGCC
1 AGTGTAAG-A-CATGTCTGGGACAT-GCATCGACTCGAGATGATAAGCC
* *
63808586 AGTGTAAGACCATGTTTAGGACATAGCATCGA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGA
63808618 TACTTTACCC
Statistics
Matches: 105, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
45 3 0.03
46 41 0.39
47 25 0.24
48 28 0.27
49 8 0.08
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTCGAGATGATAAGCC
Found at i:63811989 original size:4 final size:4
Alignment explanation
Indices: 63811980--63812006 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
63811970 GTGTGTATGC
63811980 ATTT ATTT ATTT ATTT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATT
63812007 GTAACTTGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:63812696 original size:41 final size:40
Alignment explanation
Indices: 63812592--63812760 Score: 252
Period size: 40 Copynumber: 4.2 Consensus size: 40
63812582 ATATATTATA
* *
63812592 TATATCCGGGTCAAATCCCGCAGGTTTCGTGCTAGTAATG
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
63812632 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
*
63812672 TATATCTGGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATC-CGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
* * * *
63812713 TATATCCGGGTTAAATCTCGTAGGCTTAGTGCTGGT-AT-
1 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
63812751 TATATCCGGG
1 TATATCCGGG
63812761 CTTAAAGTTC
Statistics
Matches: 120, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 10 0.08
39 2 0.02
40 69 0.57
41 39 0.32
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (40 bp):
TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:63812738 original size:81 final size:79
Alignment explanation
Indices: 63812599--63812756 Score: 244
Period size: 81 Copynumber: 2.0 Consensus size: 79
63812589 ATATATATCC
* *
63812599 GGGTCAAATCCCGCAGGTTTCGTGCTAGTAATGTATATCCGGGTCAAATCCCGCAGGCTTCGTGC
1 GGGTCAAATCCCGCAGGCTTCGTGCTAGTAATGTATATCCGGGTCAAATCCCGCAGGCTTAGTGC
63812664 TGGTAATGTATATCTG
66 TGGT-AT-TATATCTG
* * * *
63812680 GGGTCAAATCCCGCAGGCTTCGTGCTGGTAATGTATATCCGGGTTAAATCTCGTAGGCTTAGTGC
1 GGGTCAAATCCCGCAGGCTTCGTGCTAGTAATGTATATCCGGGTCAAATCCCGCAGGCTTAGTGC
63812745 TGGTATTATATC
66 TGGTATTATATC
63812757 CGGGCTTAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
79 6 0.08
80 2 0.03
81 63 0.89
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (79 bp):
GGGTCAAATCCCGCAGGCTTCGTGCTAGTAATGTATATCCGGGTCAAATCCCGCAGGCTTAGTGC
TGGTATTATATCTG
Found at i:63815893 original size:40 final size:41
Alignment explanation
Indices: 63815831--63816087 Score: 277
Period size: 40 Copynumber: 6.5 Consensus size: 41
63815821 AAGCCAAGTA
* * *
63815831 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTA-GAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTTGCTACAAATG
* *
63815870 CCTTCGGGACATAGCCCGGATATAGTAAC-T-CTCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCT-ACAAATG
*
63815910 CCTTCGGGACTTAGCCCAGATATAGTAAC-T-CTTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGC-TACAAATG
* **
63815950 CCTTCGGGACTTAGCCCAGATATAGTAACTCAC-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCTACAAATG
*
63815990 CCTTC-GGACTTAGCCCGGATATAGTAACTCGC-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCTACAAATG
* * *
63816029 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGC-GCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTTGCTACAAATG
63816069 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63816088 TTATCATCCA
Statistics
Matches: 196, Mismatches: 13, Indels: 17
0.87 0.06 0.08
Matches are distributed among these distances:
38 2 0.01
39 52 0.27
40 140 0.71
41 1 0.01
42 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTTGCTACAAATG
Found at i:63816039 original size:79 final size:80
Alignment explanation
Indices: 63815866--63816087 Score: 324
Period size: 79 Copynumber: 2.8 Consensus size: 80
63815856 TACTTGCTAG
* * * *
63815866 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCTCACCAATGCCTTCGGGACTTAGCCCAGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
**
63815931 ATAGTAACTCTTACA
66 ATAGTAACTCGCACA
*
63815946 AATGCCTTCGGGACTTAGCCCAGATATAGTAACTCACACAAATGCCTTC-GGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
63816010 ATAGTAACTCGCACA
66 ATAGTAACTCGCACA
* *
63816025 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCAAATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATGCCTTCGGGACTTAGCCCGG
63816088 TTATCATCCA
Statistics
Matches: 129, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
78 2 0.02
79 69 0.53
80 58 0.45
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTCGCACA
Found at i:63816042 original size:119 final size:120
Alignment explanation
Indices: 63815866--63816085 Score: 336
Period size: 119 Copynumber: 1.8 Consensus size: 120
63815856 TACTTGCTAG
* *
63815866 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCTCACCAATGCCTTCGGGACTTAGCCCAGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA-
***
63815931 A-TAGTAACTCTTACAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCACACA
65 ACTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCACACA
* *
63815986 AATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAA
* *
63816050 CTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCC
66 CTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
63816086 GGTTATCATC
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
118 1 0.01
119 80 0.89
120 9 0.10
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAA
CTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCACACA
Found at i:63824102 original size:40 final size:40
Alignment explanation
Indices: 63824039--63824295 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
63824029 AAGCCAAGTA
* * * * *
63824039 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
63824078 CCTTCGGGACATAGCTCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63824118 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
63824158 CCTTCAAGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63824198 CCTTCGGGACTTA-CCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
63824237 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
63824277 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63824296 TTATCATCCA
Statistics
Matches: 193, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 51 0.26
40 142 0.74
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63824248 original size:79 final size:80
Alignment explanation
Indices: 63824039--63824295 Score: 344
Period size: 79 Copynumber: 3.2 Consensus size: 80
63824029 AAGCCAAGTA
* * * * * * *
63824039 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATGCCTTCGGGACATAGCTCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
63824102 GTAACTCACACCAATG
65 GTAACTCACACAAATG
**
63824118 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAAGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
63824183 TAACTCACACAAATG
66 TAACTCACACAAATG
63824198 CCTTCGGGACTTA-CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
* *
63824261 GTCACT-AGCGCAAATG
65 GTAACTCA-CACAAATG
63824277 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63824296 TTATCATCCA
Statistics
Matches: 159, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
78 2 0.01
79 84 0.53
80 73 0.46
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCACACAAATG
Found at i:63824250 original size:119 final size:120
Alignment explanation
Indices: 63824074--63824295 Score: 340
Period size: 119 Copynumber: 1.9 Consensus size: 120
63824064 TACTTGCTCG
* *
63824074 AATGCCTTCGGGACATAGCTCGGATATAGTAACTCACACCAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGA-
*
63824139 A-TAGTAACTCGCACAAATGCCTTCAAGACTTAGCCCGGATATAGTAACTCACACA
65 ACTAGTAACTAGCACAAATGCCTTCAAGACTTAGCCCGGATATAGTAACTCACACA
* *
63824194 AATGCCTTCGGGACTTA-CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAA
* * **
63824258 CTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
66 CTAGTAACTAGCACAAATGCCTTCAAGACTTAGCCCGG
63824296 TTATCATCCA
Statistics
Matches: 92, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
118 1 0.01
119 75 0.82
120 16 0.17
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAA
CTAGTAACTAGCACAAATGCCTTCAAGACTTAGCCCGGATATAGTAACTCACACA
Found at i:63830858 original size:46 final size:46
Alignment explanation
Indices: 63830664--63830885 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 46
63830654 ATTTGTGTGT
* * * ** *
63830664 GAGCTAGTGTAATACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGACGA
* **
63830710 GAGCAAGTGTAAGACCATGTCTGGGAAATGGCATCGGC-ATTGAGACGA
1 GAGCAAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAAGACGA
* * ** *
63830758 GAGCTAGTGTAAGACATGTCTGAGACATGCATCCACCT-CGAGACGTA
1 GAGCAAGTGTAAGACATGTCTGGGACATGCAT-CGGCTACAAGACG-A
* * *
63830805 -AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTACAAGATGA
1 GAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGACGA
* *
63830850 TAGTC-AGTGTAAGACCATGTCTAGGACATGGCATCG
1 GAG-CAAGTGTAAGA-CATGTCTGGGACAT-GCATCG
63830886 ACTTGAGATA
Statistics
Matches: 142, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
45 4 0.03
46 66 0.46
47 42 0.30
48 30 0.21
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
GAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGACGA
Found at i:63830905 original size:47 final size:47
Alignment explanation
Indices: 63830663--63830934 Score: 186
Period size: 47 Copynumber: 5.8 Consensus size: 47
63830653 CATTTGTGTG
* * * *
63830663 TGAGCTAGTGTAATA-CATGTCTGGGACAT-GCATCGGC-C-ACATTA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGA-TA
* * * * *
63830707 TGAGAGCAAGTGTAAGACCATGTCTGGGAAATGGCATCGGCATTGAGACGA
1 T--GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGAGA-TA
* * * **
63830758 -GAGCTAGTGTAAGA-CATGTCTGAGACAT-GCATCCACCTCGAGACG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTCGAGATA
* * * *
63830803 TAAGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTACAAGATGA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGAT-A
* * *
63830850 T-AGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATA
* * *
63830896 TGAGCCAGTGTAAAACCATGTCTTGTACATGGCATCGAC
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
63830935 ACTTTACCCA
Statistics
Matches: 180, Mismatches: 34, Indels: 25
0.75 0.14 0.10
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 69 0.38
47 76 0.42
48 29 0.16
51 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (47 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATA
Done.