Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 202 of 433
Found at i:63830926 original size:140 final size:141
Alignment explanation
Indices: 63830669--63830931 Score: 338
Period size: 140 Copynumber: 1.9 Consensus size: 141
63830659 TGTGTGAGCT
* ** *
63830669 AGTGTAATACATGTCTGGGACATGCATCGGCCACATTATGAGAGCAAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCAAGTGTAAGACCATGTCTAG
* * *
63830734 GAAATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGAGACAT-GCATCCACCTCG
66 GAAATGGCATCGACATTGAGACGAGAGCCAGTGTAAAACATGTCTGAGACATGGCATCCACCTCG
63830798 AGACGTAAGCC
131 AGACGTAAGCC
* * *
63830809 AGTGTAAGACATGTTTGGGACATGCATCGGCTACAAGATGATAGTC-AGTGTAAGACCATGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAG-CAAGTGTAAGACCATGTCTA
* * *
63830873 GGACATGGCATCGAC-TTGAGA-TATGAGCCAGTGTAAAACCATGTCTTG-TACATGGCATC
65 GGAAATGGCATCGACATTGAGACGA-GAGCCAGTGTAAAA-CATGTC-TGAGACATGGCATC
63830932 GACACTTTAC
Statistics
Matches: 105, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 78 0.74
141 8 0.08
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCAAGTGTAAGACCATGTCTAG
GAAATGGCATCGACATTGAGACGAGAGCCAGTGTAAAACATGTCTGAGACATGGCATCCACCTCG
AGACGTAAGCC
Found at i:63834998 original size:49 final size:49
Alignment explanation
Indices: 63834942--63835156 Score: 394
Period size: 49 Copynumber: 4.4 Consensus size: 49
63834932 TATCAAAATT
63834942 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
63834991 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
63835040 TGTGAAAGTGTATATATATGTGATAAGGCCTCATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
63835089 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
63835138 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
63835157 ATGTGGTAAA
Statistics
Matches: 159, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 159 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:63835280 original size:37 final size:37
Alignment explanation
Indices: 63835239--63835309 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
63835229 TTCCGGGTGA
63835239 GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
63835276 GACCCGATGACTACGTGTGGAGATTATGTCCGGG
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGG
63835310 TAAGACTTCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.34, T:0.23
Consensus pattern (37 bp):
GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
Found at i:63837582 original size:40 final size:40
Alignment explanation
Indices: 63837181--63837570 Score: 519
Period size: 40 Copynumber: 9.8 Consensus size: 40
63837171 GAATTGAGAA
* * *
63837181 TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* * *
63837221 TGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* * *
63837261 TGATATATCCGGACTAAGTTCCGAAGAGCATTTGTGCTAA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* *
63837301 TGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* * *
63837341 TGATATATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* *
63837381 TGATATATCTGGGCTAAATTCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* *
63837421 TGATGTATCCGGGATAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* * *
63837461 TGATGTATCCGGGCTAAGCTCCGAAGAGCATTTGTGCTAG
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* *** *
63837501 TGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
* * *
63837541 TGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 TGATATATCCGGGCTAAGTTCCGAAGAGCA
63837571 ATCATGCTGG
Statistics
Matches: 319, Mismatches: 31, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 319 1.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
Found at i:63840369 original size:47 final size:47
Alignment explanation
Indices: 63840251--63840423 Score: 191
Period size: 47 Copynumber: 3.7 Consensus size: 47
63840241 GGATGGTTGA
*
63840251 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
63840299 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
* *
63840342 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
*
63840391 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
63840424 TAGGGGCGGG
Statistics
Matches: 108, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 31 0.29
46 30 0.28
47 33 0.31
48 1 0.01
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:63840417 original size:92 final size:93
Alignment explanation
Indices: 63840251--63840420 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
63840241 GGATGGTTGA
* *
63840251 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63840316 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
63840344 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63840408 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63840421 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 41 0.55
93 33 0.45
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63842702 original size:22 final size:21
Alignment explanation
Indices: 63842677--63842725 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 21
63842667 ATACCTTAAT
63842677 CTAGCTTGAAAAAGGCCGAACC
1 CTAGCTT-AAAAAGGCCGAACC
*
63842699 CTAGCCTTAACAAGGCCGAACC
1 CTAG-CTTAAAAAGGCCGAACC
63842721 CTAGC
1 CTAGC
63842726 CTTATTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 21 0.84
23 3 0.12
ACGTcount: A:0.33, C:0.33, G:0.20, T:0.14
Consensus pattern (21 bp):
CTAGCTTAAAAAGGCCGAACC
Found at i:63842726 original size:22 final size:22
Alignment explanation
Indices: 63842688--63842729 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
63842678 TAGCTTGAAA
63842688 AAGGCCGAACCCTAGCCTTAAC
1 AAGGCCGAACCCTAGCCTTAAC
63842710 AAGGCCGAACCCTAGCCTTA
1 AAGGCCGAACCCTAGCCTTA
63842730 TTTTTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.31, C:0.36, G:0.19, T:0.14
Consensus pattern (22 bp):
AAGGCCGAACCCTAGCCTTAAC
Found at i:63845155 original size:24 final size:24
Alignment explanation
Indices: 63845122--63845182 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
63845112 GTAGATCGGC
*
63845122 AAATCCCGAAAAGTCGAAATA-CC-
1 AAATACCGAAAAGTCGAAA-AGCCA
* *
63845145 AAATAGCCGAAATGTCTAAAAGCCA
1 AAATA-CCGAAAAGTCGAAAAGCCA
63845170 AAATACCGAAAAG
1 AAATACCGAAAAG
63845183 CCAAAAGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
23 5 0.16
24 21 0.68
25 5 0.16
ACGTcount: A:0.51, C:0.21, G:0.15, T:0.13
Consensus pattern (24 bp):
AAATACCGAAAAGTCGAAAAGCCA
Found at i:63845181 original size:16 final size:16
Alignment explanation
Indices: 63845122--63845188 Score: 55
Period size: 16 Copynumber: 4.2 Consensus size: 16
63845112 GTAGATCGGC
* * *
63845122 AAATCCCGAAAAGTCG
1 AAATACCGAAAAGCCA
*
63845138 AAATACC-AAATAGCCG
1 AAATACCGAAA-AGCCA
** *
63845154 AAATGTCTAAAAGCCA
1 AAATACCGAAAAGCCA
63845170 AAATACCGAAAAGCCA
1 AAATACCGAAAAGCCA
63845186 AAA
1 AAA
63845189 GTTTGGCTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
15 3 0.07
16 35 0.85
17 3 0.07
ACGTcount: A:0.52, C:0.22, G:0.13, T:0.12
Consensus pattern (16 bp):
AAATACCGAAAAGCCA
Found at i:63845464 original size:29 final size:28
Alignment explanation
Indices: 63845423--63845490 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
63845413 TGGGTCCAGT
*
63845423 GGCCATATGAATGT-AATTTGGGCCTAATA
1 GGCCATATAAATGTGAA--TGGGCCTAATA
*
63845452 GGCCACATAAATGTGAATGGGCCTAATA
1 GGCCATATAAATGTGAATGGGCCTAATA
63845480 GGCCATATAAA
1 GGCCATATAAA
63845491 AGAGATTGGC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
28 21 0.60
29 12 0.34
30 2 0.06
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (28 bp):
GGCCATATAAATGTGAATGGGCCTAATA
Found at i:63848342 original size:49 final size:49
Alignment explanation
Indices: 63848272--63848384 Score: 212
Period size: 49 Copynumber: 2.3 Consensus size: 49
63848262 CCCTTCGGGA
63848272 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63848319 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63848368 CTTATCACATATATATA
1 CTTATCACATATATATA
63848385 TCTCATACAA
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
47 10 0.16
48 1 0.02
49 53 0.83
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63857424 original size:29 final size:29
Alignment explanation
Indices: 63857391--63857464 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
63857381 GTGACGAGAT
63857391 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
63857420 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
63857449 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63857465 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:63857480 original size:29 final size:29
Alignment explanation
Indices: 63857448--63857523 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
63857438 CTGGAAATAT
* *
63857448 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
63857477 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
63857506 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
63857524 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:63857491 original size:58 final size:58
Alignment explanation
Indices: 63857391--63857523 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
63857381 GTGACGAGAT
* * * * * *
63857391 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
63857449 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
63857507 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
63857524 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:63859304 original size:28 final size:28
Alignment explanation
Indices: 63859258--63859326 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
63859248 TTTAAAACCC
*
63859258 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
63859285 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
63859313 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
63859327 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:63860978 original size:20 final size:20
Alignment explanation
Indices: 63860955--63860992 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63860945 CACATCCAAA
*
63860955 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
63860975 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
63860993 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:63867307 original size:28 final size:28
Alignment explanation
Indices: 63867261--63867329 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
63867251 TTTAAAACCC
*
63867261 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
63867288 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
63867316 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
63867330 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:63868981 original size:20 final size:20
Alignment explanation
Indices: 63868958--63868995 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63868948 CACATCCAAA
*
63868958 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
63868978 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
63868996 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:63880412 original size:29 final size:29
Alignment explanation
Indices: 63880379--63880481 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
63880369 CCTCCGAACT
** * * *
63880379 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
63880408 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63880437 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63880466 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63880482 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:63888355 original size:29 final size:29
Alignment explanation
Indices: 63888322--63888424 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
63888312 CCTCCGAACT
** * * *
63888322 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
63888351 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63888380 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63888409 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63888425 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:63903504 original size:40 final size:40
Alignment explanation
Indices: 63903434--63903651 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
63903424 AAACCAAGTA
* *
63903434 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
63903473 CCTTCGGGACTTAGTCCGGTTATAGTGACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63903513 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63903553 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
63903593 CCTTCGAGG-CTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCG-GGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
63903633 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63903652 TTATCATCCG
Statistics
Matches: 162, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
39 17 0.10
40 143 0.88
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63910290 original size:34 final size:28
Alignment explanation
Indices: 63910222--63910311 Score: 144
Period size: 28 Copynumber: 3.2 Consensus size: 28
63910212 TGACAGAGTA
63910222 ACCAGATATAGATATTTGTGGCGTAGCC
1 ACCAGATATAGATATTTGTGGCGTAGCC
63910250 ACCAGATATAGATATTTGTGGCGTAGCC
1 ACCAGATATAGATATTTGTGGCGTAGCC
* * * *
63910278 ACCAGAAACAGATAATTGTGGCATAGCC
1 ACCAGATATAGATATTTGTGGCGTAGCC
63910306 ACCAGA
1 ACCAGA
63910312 ATGCTTCCTC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (28 bp):
ACCAGATATAGATATTTGTGGCGTAGCC
Found at i:63910312 original size:28 final size:28
Alignment explanation
Indices: 63910197--63910312 Score: 110
Period size: 28 Copynumber: 4.2 Consensus size: 28
63910187 GGCATGGCTG
* * **
63910197 CCAG-AACAGAT-ATTGTGACAGAGTAA
1 CCAGAAACAGATAATTGTGGCATAGCCA
* * * *
63910223 CCAGATATAGATATTTGTGGCGTAGCCA
1 CCAGAAACAGATAATTGTGGCATAGCCA
* * * *
63910251 CCAGATATAGATATTTGTGGCGTAGCCA
1 CCAGAAACAGATAATTGTGGCATAGCCA
63910279 CCAGAAACAGATAATTGTGGCATAGCCA
1 CCAGAAACAGATAATTGTGGCATAGCCA
63910307 CCAGAA
1 CCAGAA
63910313 TGCTTCCTCC
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
26 4 0.05
27 5 0.07
28 67 0.88
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.22
Consensus pattern (28 bp):
CCAGAAACAGATAATTGTGGCATAGCCA
Found at i:63915336 original size:49 final size:50
Alignment explanation
Indices: 63915256--63915638 Score: 448
Period size: 49 Copynumber: 7.7 Consensus size: 50
63915246 ATCTATTGTG
*
63915256 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * ** *
63915306 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * ** * * ** **
63915356 CGATCACGTGTAAAGTACTAAGTGCAAGCTACTACGTGTATCAAATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
63915406 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * * *
63915456 -GGTCGCATGTGTAGCACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * **
63915506 CGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
63915556 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
63915606 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
63915639 TGCGTACCAG
Statistics
Matches: 273, Mismatches: 56, Indels: 9
0.81 0.17 0.03
Matches are distributed among these distances:
49 113 0.41
50 91 0.33
51 69 0.25
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:63915468 original size:101 final size:98
Alignment explanation
Indices: 63915264--63915651 Score: 425
Period size: 100 Copynumber: 3.9 Consensus size: 98
63915254 TGAGGTCACG
*
63915264 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACTAAGTG
* ** * * * *
63915329 CAGGCTACTATGCATACCTGATAACTTCGATCACG
66 CAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
** * ** ** *
63915364 TGTAAAGTACTAAGTGCAAGCTACTACGTGTATCAAATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT-GGTCACATGTGTAGTACTAAGT
*
63915429 GCAGGCTACTACGTGTACCGGATAATTGGTCGCA
65 GCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * *
63915463 TGTGTAGCACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAA-TT-GGTCACATGTGTAGTACTAAG
* * ** * *
63915528 TGCAAGCTACTACGTGTATCAGATGGTTAGGTCACG
64 TGCAGGCTACTACGTGTACCAGATAATT-GGTCGCA
*
63915564 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACTAAGTG
* *
63915629 CAGGCTACTATGCGTACCAGATA
66 CAGGCTACTACGTGTACCAGATA
63915652 GCCTTGTCTA
Statistics
Matches: 238, Mismatches: 47, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
99 72 0.30
100 84 0.35
101 82 0.34
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACTAAGTG
CAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:63915527 original size:150 final size:150
Alignment explanation
Indices: 63915256--63915651 Score: 711
Period size: 150 Copynumber: 2.6 Consensus size: 150
63915246 ATCTATTGTG
*
63915256 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* *
63915321 ACTAAGTGCAGGCTACTATGCATACCTGATAACTTCGATCACGTGTAAAGTACTAAGTGCAAGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACGTGTAAAGTACTAAGTGCAAGCT
63915386 ACTACGTGTATCAAATGGTT
131 ACTACGTGTATCAAATGGTT
*
63915406 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGC
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* **
63915471 ACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACGTGTAAAGTACTAAGTGCAAGCT
*
63915536 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAAATGGTT
*
63915556 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
63915621 ACTAAGTGCAGGCTACTATGCGTACCAGATA
66 ACTAAGTGCAGGCTACTATGCGTACCAGATA
63915652 GCCTTGTCTA
Statistics
Matches: 236, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
150 236 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACGTGTAAAGTACTAAGTGCAAGCT
ACTACGTGTATCAAATGGTT
Found at i:63921159 original size:49 final size:49
Alignment explanation
Indices: 63921099--63921330 Score: 279
Period size: 49 Copynumber: 4.7 Consensus size: 49
63921089 TCTATTGTGA
*
63921099 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATT
* * *
63921148 GGTCACATGTGTAGTACTAAGTGCAGGCTACT--ATGCTTACCCGATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACATG--TACCGGATAA--TT
* * * * **
63921199 GATCACGTGTGTAGTACTAAGTGCAAGCTTCTACATGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATT
* * *
63921248 AGGTCACGTGTGTAGTACTATGTGTAGGCTACTACATGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATT
*
63921298 GGTCACATGTGTAGTACTAAGTGCAAGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTA
63921331 TGCGTACTAG
Statistics
Matches: 151, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
47 2 0.01
49 70 0.46
50 40 0.26
51 36 0.24
53 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATT
Found at i:63925649 original size:29 final size:29
Alignment explanation
Indices: 63925572--63925719 Score: 135
Period size: 29 Copynumber: 5.2 Consensus size: 29
63925562 GCATGAACAT
* * * *
63925572 AATGTGATTTGGGCCAGATGAGCCATATA
1 AATGTGAATTGGGCCTGATGGGCCATATG
* *
63925601 AATGAG-ATTGGGCCTAATGGGCCATATG
1 AATGTGAATTGGGCCTGATGGGCCATATG
* *
63925629 AATGTGAATTGGGTCTGATGGGCCACATG
1 AATGTGAATTGGGCCTGATGGGCCATATG
*
63925658 AACT-TGAATTGGG-CTGGATGGGCCATATA
1 AA-TGTGAATTGGGCCT-GATGGGCCATATG
*
63925687 AATGAG-ATTGGGCCT-AGTGGGCCATATG
1 AATGTGAATTGGGCCTGA-TGGGCCATATG
*
63925715 CATGT
1 AATGT
63925720 ATATAGAGGT
Statistics
Matches: 97, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
27 1 0.01
28 44 0.45
29 51 0.53
30 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (29 bp):
AATGTGAATTGGGCCTGATGGGCCATATG
Found at i:63928599 original size:53 final size:53
Alignment explanation
Indices: 63928519--63928620 Score: 168
Period size: 53 Copynumber: 1.9 Consensus size: 53
63928509 AGAGAACTTA
*
63928519 CCCAATTAGGCCTTGAAAGTTTCTTTTCTCACTCCTAGGGTCTCCATGTGTTT
1 CCCAATTAGGCCTTGAAAGTTTATTTTCTCACTCCTAGGGTCTCCATGTGTTT
* * *
63928572 CCCAATTAGGCCTTGAAAGTTTATTTTCTCTCTCTTAGGGTTTCCATGT
1 CCCAATTAGGCCTTGAAAGTTTATTTTCTCACTCCTAGGGTCTCCATGT
63928621 ATTTTAAGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.41
Consensus pattern (53 bp):
CCCAATTAGGCCTTGAAAGTTTATTTTCTCACTCCTAGGGTCTCCATGTGTTT
Found at i:63933914 original size:40 final size:40
Alignment explanation
Indices: 63933791--63933927 Score: 145
Period size: 40 Copynumber: 3.4 Consensus size: 40
63933781 GAATGATATT
* * *
63933791 CGGGTTAATTCCCGAAAGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAATTCCCGAAGGCATTTGCGCGAATTACTAAATC
* * * *
63933831 CAGGTTAATTCCCGAAGGCAATTGGGC-AAGTTACCAAATC
1 CGGGTTAATTCCCGAAGGCATTTGCGCGAA-TTACTAAATC
*
63933871 CGGGTTAACTCCCGAAGGCATTTGCGCGAATTACTATAA-C
1 CGGGTTAATTCCCGAAGGCATTTGCGCGAATTACTA-AATC
*
63933911 CGGGCT-ATGTCCCGAAG
1 CGGGTTAAT-TCCCGAAG
63933928 ACAATCGAGC
Statistics
Matches: 80, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
39 2 0.03
40 74 0.93
41 4 0.05
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (40 bp):
CGGGTTAATTCCCGAAGGCATTTGCGCGAATTACTAAATC
Found at i:63941769 original size:39 final size:40
Alignment explanation
Indices: 63941725--63941826 Score: 160
Period size: 36 Copynumber: 2.7 Consensus size: 40
63941715 TTCGAATGAT
63941725 ATCCGGGTTAATTCCCGAAGGCATTTGTG-GAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
63941764 ATCCGGG-T--TTCCCGAAGGCA-TTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
*
63941800 ATCCGGGTTAAGTCCCGAAGGCATTTG
1 ATCCGGGTTAATTCCCGAAGGCATTTG
63941827 CGAATTACTA
Statistics
Matches: 57, Mismatches: 1, Indels: 9
0.85 0.01 0.13
Matches are distributed among these distances:
35 5 0.09
36 29 0.51
37 1 0.02
38 1 0.02
39 18 0.32
40 3 0.05
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:63941844 original size:38 final size:38
Alignment explanation
Indices: 63941725--63941857 Score: 157
Period size: 36 Copynumber: 3.5 Consensus size: 38
63941715 TTCGAATGAT
* *
63941725 ATCCGGGTTAATTCCCGAAGGCATTTGTGGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTG-CGAGTTACCAA
63941764 ATCCGGGTT---TCCCGAAGGCATTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATT-TGCGAGTTACCAA
* *
63941800 ATCCGGGTTAAGTCCCGAAGGCATTTGCGAATTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGAGTTACCA-A
* *
63941839 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
63941858 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
36 32 0.38
37 2 0.02
38 26 0.31
39 24 0.29
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (38 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGCGAGTTACCAA
Found at i:63951344 original size:40 final size:40
Alignment explanation
Indices: 63951289--63951424 Score: 161
Period size: 40 Copynumber: 3.4 Consensus size: 40
63951279 GAATGATATT
* *
63951289 CGGGTTAATTCCCGAAAGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAATTCCCGAAGGCATTTGCGCGAGTTACTAAATC
* * *
63951329 CGGGTTAATTCCCGAAGGCAATTGGGC-AGTTACCAAATC
1 CGGGTTAATTCCCGAAGGCATTTGCGCGAGTTACTAAATC
* *
63951368 CGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATAA-C
1 CGGGTTAATTCCCGAAGGCATTTGCGCGAGTTACTA-AATC
*
63951408 CGGGCT-ATGTCCCGAAG
1 CGGGTTAAT-TCCCGAAG
63951425 ACAATCGAGC
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 36 0.44
40 44 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CGGGTTAATTCCCGAAGGCATTTGCGCGAGTTACTAAATC
Found at i:63951371 original size:39 final size:40
Alignment explanation
Indices: 63951289--63951401 Score: 147
Period size: 39 Copynumber: 2.9 Consensus size: 40
63951279 GAATGATATT
* * * *
63951289 CGGGTTAATTCCCGAAAGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAATTCCCGAAGGCAATTGGGCGAGTTACCAAATC
63951329 CGGGTTAATTCCCGAAGGCAATTGGGC-AGTTACCAAATC
1 CGGGTTAATTCCCGAAGGCAATTGGGCGAGTTACCAAATC
* * * *
63951368 CGGGTTAAGTCCCGAAGGCATTTGCGCGAATTAC
1 CGGGTTAATTCCCGAAGGCAATTGGGCGAGTTAC
63951402 TATAACCGGG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
39 35 0.55
40 29 0.45
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CGGGTTAATTCCCGAAGGCAATTGGGCGAGTTACCAAATC
Found at i:63951453 original size:79 final size:79
Alignment explanation
Indices: 63951289--63951464 Score: 180
Period size: 79 Copynumber: 2.2 Consensus size: 79
63951279 GAATGATATT
* * * * * * * *
63951289 CGGGTTAATTCCCGAAAGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATTGG
1 CGGGTTAAATCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAATTCCCGAAGACAATCGA
63951354 GCAGTTACCAAATC
66 GCAGTTACCAAATC
*
63951368 CGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAGACAATC
1 CGGGTTAAATCCCGAAGGCATTTGCGCGAATTACTA-AATCCGGGCTAAT-TCCCGAAGACAATC
* *
63951431 GAGCGAG-TAGCTATATC
64 GAGC-AGTTA-CCAAATC
*
63951448 C-GGTTAAATTCCGAAGG
1 CGGGTTAAATCCCGAAGG
63951465 TACGTGATTC
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
78 2 0.02
79 69 0.85
80 10 0.12
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (79 bp):
CGGGTTAAATCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAATTCCCGAAGACAATCGA
GCAGTTACCAAATC
Found at i:63953042 original size:17 final size:17
Alignment explanation
Indices: 63953020--63953055 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
63953010 GCACAAGGGA
63953020 CAGCGCCGGCGGACTCT
1 CAGCGCCGGCGGACTCT
63953037 CAGCGCCGGCGGACTCT
1 CAGCGCCGGCGGACTCT
63953054 CA
1 CA
63953056 ACAAATGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.14, C:0.42, G:0.33, T:0.11
Consensus pattern (17 bp):
CAGCGCCGGCGGACTCT
Found at i:63959364 original size:40 final size:40
Alignment explanation
Indices: 63959238--63959354 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
63959228 TTCGAATGAT
*
63959238 ATCCGGGTTAATTCCCGAAGGCATTTGTGAGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
*
63959278 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
* * * *
63959318 ATCCGGGTTAAGTCTCGAAGGCATTTGCGCGAATTAC
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTAC
63959355 TATAACCGGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:63959374 original size:80 final size:80
Alignment explanation
Indices: 63959238--63959391 Score: 186
Period size: 80 Copynumber: 1.9 Consensus size: 80
63959228 TTCGAATGAT
* * * * *
63959238 ATCCGGGTTAATTCCCGAAGGCATTTGTGAGAGTTACCAAATCCGGGTTAATTCCCGAAGGCAAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGAGAATTACCAAATCCGGGCTAATTCCCGAAGACAAT
* *
63959303 TGTGCGAGTTACCAA
66 CGAGCGAGTTACCAA
* * *
63959318 ATCCGGGTTAAGTCTCGAAGGCATTTGCGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAGACA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGAGAATTACCA-AATCCGGGCTAAT-TCCCGAAGACA
63959381 ATCGAGCGAGT
64 ATCGAGCGAGT
63959392 AGCTATATCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
79 2 0.03
80 58 0.94
81 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGCGAGAATTACCAAATCCGGGCTAATTCCCGAAGACAAT
CGAGCGAGTTACCAA
Found at i:63959377 original size:40 final size:40
Alignment explanation
Indices: 63959238--63959377 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 40
63959228 TTCGAATGAT
*
63959238 ATCCGGGTTAAT-TCCCGAAGGCATTTGTGAGAGTTACCAA
1 ATCCGGGTT-ATGTCCCGAAGGCATTTGTGCGAGTTACCAA
*
63959278 ATCCGGGTTAAT-TCCCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTT-ATGTCCCGAAGGCATTTGTGCGAGTTACCAA
* * * * *
63959318 ATCCGGGTTAAGTCTCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACCA-A
*
63959359 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTATGTCCCGAAG
63959378 ACAATCGAGC
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 84 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTATGTCCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:63959402 original size:80 final size:80
Alignment explanation
Indices: 63959236--63959417 Score: 183
Period size: 80 Copynumber: 2.3 Consensus size: 80
63959226 TATTCGAATG
* * * * *
63959236 ATATCCGGGTTAATTCCCGAAGGCATTTGTGAGAGTTACCAAATCCGGGTTAATTCCCGAAGGCA
1 ATATCCGGGTTAAGTCCCGAAGGCATTTGCGAGAATTACCAAATCCGGGCTAATTCCCGAAGACA
* *
63959301 ATTGTGCGAGTTACC
66 ATCGAGCGAGTTACC
* * * *
63959316 AAATCCGGGTTAAGTCTCGAAGGCATTTGCGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAGA
1 ATATCCGGGTTAAGTCCCGAAGGCATTTGCGAGAATTACCA-AATCCGGGCTAAT-TCCCGAAGA
*
63959379 CAATCGAGCGAG-TAGCT
64 CAATCGAGCGAGTTA-CC
* *
63959396 ATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGTTAAGTCCCGAAGG
63959418 TACGTGATTC
Statistics
Matches: 83, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
79 17 0.20
80 64 0.77
81 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (80 bp):
ATATCCGGGTTAAGTCCCGAAGGCATTTGCGAGAATTACCAAATCCGGGCTAATTCCCGAAGACA
ATCGAGCGAGTTACC
Found at i:63963576 original size:29 final size:29
Alignment explanation
Indices: 63963543--63963644 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
63963533 CCTTCGAGCT
** * *
63963543 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
63963572 TGCACATTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63963601 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63963630 CGCA-ACTTAGTGCCA
1 CGCACACTTAGTGCCA
63963645 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 11 0.17
29 54 0.83
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:63963577 original size:58 final size:58
Alignment explanation
Indices: 63963514--63963644 Score: 147
Period size: 58 Copynumber: 2.3 Consensus size: 58
63963504 AATTTAAGCC
* * * * * *
63963514 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * * **
63963572 TGCACATTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
63963630 CGCA-ACTTAGTGCCA
1 CGCACACTTAGTGCCA
63963645 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
57 10 0.17
58 49 0.83
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:63971311 original size:29 final size:29
Alignment explanation
Indices: 63971278--63971380 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
63971268 CCTCCGAACT
** * * *
63971278 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
63971307 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63971336 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63971365 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63971381 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:63979265 original size:29 final size:29
Alignment explanation
Indices: 63979232--63979334 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
63979222 CCTCCGAACT
** * * *
63979232 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
63979261 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63979290 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
63979319 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
63979335 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:63982313 original size:47 final size:47
Alignment explanation
Indices: 63982262--63982453 Score: 287
Period size: 47 Copynumber: 4.1 Consensus size: 47
63982252 TTTAGGATTG
*
63982262 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
63982309 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
63982356 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * * * * *
63982403 AATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCT
1 AATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCC
63982450 AATG
1 AATG
63982454 CGAAATGTGT
Statistics
Matches: 135, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
47 132 0.98
48 3 0.02
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:63982316 original size:22 final size:22
Alignment explanation
Indices: 63982289--63982363 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
63982279 CATGCATATG
63982289 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
63982311 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
63982334 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
63982358 TGTGAT
1 TGTGAT
63982364 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:63982483 original size:46 final size:46
Alignment explanation
Indices: 63982427--63982609 Score: 258
Period size: 46 Copynumber: 4.0 Consensus size: 46
63982417 GGAAGTGTAT
* * ** *
63982427 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATAAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* *
63982473 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
*
63982519 ATATGAGGTAAAGCCAAATGGCGAATGCGAAACATGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * * *
63982565 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
63982610 TGTATATATA
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 126 1.00
ACGTcount: A:0.36, C:0.09, G:0.31, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:63991053 original size:22 final size:22
Alignment explanation
Indices: 63991025--63991067 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
63991015 AATTTCTAAT
63991025 TTTTTAAAATTTTATTCTATTA
1 TTTTTAAAATTTTATTCTATTA
* *
63991047 TTTTTAATATTTTATTGTATT
1 TTTTTAAAATTTTATTCTATT
63991068 TTATAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTTTAAAATTTTATTCTATTA
Found at i:63993213 original size:19 final size:17
Alignment explanation
Indices: 63993170--63993225 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 17
63993160 AAAAACATTT
63993170 TATTTTTATAAAAA-TA
1 TATTTTTATAAAAATTA
63993186 TACTTTTTATAAAATATTA
1 TA-TTTTTATAAAA-ATTA
*
63993205 TGATTTTTATGAAACATTA
1 T-ATTTTTAT-AAAAATTA
63993224 TA
1 TA
63993226 AAATATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
16 2 0.06
17 11 0.32
18 2 0.06
19 15 0.44
20 4 0.12
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (17 bp):
TATTTTTATAAAAATTA
Found at i:63993615 original size:5 final size:5
Alignment explanation
Indices: 63993607--63993640 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
63993597 AAAAATAAAA
63993607 AATAG AATAG AATAG AATAG AATAG AATAG AATA
1 AATAG AATAG AATAG AATAG AATAG AATAG AATA
63993641 AAAAGTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.18, T:0.21
Consensus pattern (5 bp):
AATAG
Found at i:63994438 original size:16 final size:14
Alignment explanation
Indices: 63994427--63994508 Score: 71
Period size: 14 Copynumber: 5.8 Consensus size: 14
63994417 ATATAATTTA
63994427 ATATTAAAATAATT
1 ATATTAAAATAATT
63994441 ATATTAAAAT-ATT
1 ATATTAAAATAATT
*
63994454 AT-TAAACAATATATT
1 ATATTAA-AATA-ATT
* **
63994469 ATTTTATTA-AATT
1 ATATTAAAATAATT
63994482 ATATTTAATAATAATT
1 ATA-TTAA-AATAATT
63994498 ATATTAAAATA
1 ATATTAAAATA
63994509 TGATTAAAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
12 3 0.06
13 13 0.24
14 18 0.33
15 11 0.20
16 9 0.17
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (14 bp):
ATATTAAAATAATT
Found at i:63994504 original size:57 final size:59
Alignment explanation
Indices: 63994430--63994555 Score: 188
Period size: 57 Copynumber: 2.2 Consensus size: 59
63994420 TAATTTAATA
*
63994430 TTAA-AATAATTATATTAAAATATTATTAAACA-ATATATTA-TT-TTATTAAATTATAT
1 TTAATAATAATTATATTAAAATATGATTAAA-ATATATATTATTTATTATTAAATTATAT
* *
63994486 TTAATAATAATTATATTAAAATATGATTAAAATATTTATTATTTATTATTAAATTATTT
1 TTAATAATAATTATATTAAAATATGATTAAAATATATATTATTTATTATTAAATTATAT
63994545 TTAATAATAAT
1 TTAATAATAAT
63994556 CCTATTACAA
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
56 5 0.08
57 32 0.51
58 2 0.03
59 24 0.38
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (59 bp):
TTAATAATAATTATATTAAAATATGATTAAAATATATATTATTTATTATTAAATTATAT
Found at i:64000185 original size:40 final size:40
Alignment explanation
Indices: 64000140--64000279 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
64000130 CGGATATAAC
*
64000140 GACTCGCTCAAATGCCTTCGGGAC-GAAGCCC-GGTTATAGT
1 GACTCGCACAAATGCCTTCGGGACTGAA-CCCGGGTT-TAGT
* *
64000180 GACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGT
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGGGTTTAGT
* * * * * *
64000220 AACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATT
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGGGTTTAGT
* *
64000259 AACTCGCACGAATGCCTTCGG
1 GACTCGCACAAATGCCTTCGG
64000280 ATCCTAGTCC
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.38
40 48 0.55
41 6 0.07
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
GACTCGCACAAATGCCTTCGGGACTGAACCCGGGTTTAGT
Found at i:64000249 original size:79 final size:81
Alignment explanation
Indices: 64000148--64000332 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
64000138 ACGACTCGCT
** * *
64000148 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* * *
64000211 GGGTTTAGTAACTT-GCA
64 AGATATAGTAACTTAGCA
* **
64000228 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCAG
*
64000292 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
64000308 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64000333 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCAG
ATATAGTAACTTAGCA
Found at i:64002841 original size:27 final size:27
Alignment explanation
Indices: 64002810--64002901 Score: 148
Period size: 27 Copynumber: 3.4 Consensus size: 27
64002800 CCCCAAAATA
*
64002810 GGTAAAATGATCATAATACCCCTGTAG
1 GGTAAAATGACCATAATACCCCTGTAG
*
64002837 GGTAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGACCATAATACCCCTGTAG
* *
64002864 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCATAATACCCCTGTAG
64002891 GGTAAAATGAC
1 GGTAAAATGAC
64002902 GATTATGCCC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCATAATACCCCTGTAG
Found at i:64003072 original size:27 final size:26
Alignment explanation
Indices: 64003042--64003154 Score: 93
Period size: 27 Copynumber: 4.2 Consensus size: 26
64003032 GGAAGTACTG
* *
64003042 TACTGGTGACTATGTCACATTCACTAT
1 TACTGGTGGCTATGCCACATT-ACTAT
*
64003069 TACTAGTGGCTATGCCACAATTACTGA-
1 TACTGGTGGCTATGCCAC-ATTACT-AT
*
64003096 TACTGGTGGCTTTGCCACATTTACTAT
1 TACTGGTGGCTATGCCACA-TTACTAT
* * * ** *
64003123 TTCTGATAGCTATGCTGCATTATTAT
1 TACTGGTGGCTATGCCACATTACTAT
64003149 TACTGG
1 TACTGG
64003155 CAGCTTTGCT
Statistics
Matches: 68, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
26 12 0.18
27 52 0.76
28 4 0.06
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (26 bp):
TACTGGTGGCTATGCCACATTACTAT
Found at i:64008120 original size:40 final size:40
Alignment explanation
Indices: 64008065--64008348 Score: 455
Period size: 40 Copynumber: 7.1 Consensus size: 40
64008055 TGGATGATAA
* * * *
64008065 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
*
64008105 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
64008145 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
64008185 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
64008225 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
64008265 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
64008305 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
64008345 CCGG
1 CCGG
64008349 TTAAATCCCA
Statistics
Matches: 232, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 3 0.01
40 229 0.99
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:64010508 original size:59 final size:58
Alignment explanation
Indices: 64010412--64010543 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
64010402 AAAATTGTAC
64010412 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
64010470 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
64010529 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64010544 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:64010532 original size:88 final size:89
Alignment explanation
Indices: 64010382--64010543 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
64010372 GACAAGATTG
* * *
64010382 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
64010447 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
64010471 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
64010535 AAGTGTGCG
66 AAGTGTGCG
64010544 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:64010555 original size:29 final size:29
Alignment explanation
Indices: 64010412--64010543 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
64010402 AAAATTGTAC
*
64010412 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64010441 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64010470 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
64010500 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64010529 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64010544 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:64018061 original size:27 final size:29
Alignment explanation
Indices: 64017969--64018096 Score: 226
Period size: 29 Copynumber: 4.5 Consensus size: 29
64017959 AAAATTGTAC
*
64017969 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64017998 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64018027 AGCACTAAGTGTGCGAGCTG-AAA-ATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64018054 AGCACTAAGTGTGCGAGCTG-AAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
64018082 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64018097 GATTCACTAT
Statistics
Matches: 97, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
27 27 0.28
28 22 0.23
29 48 0.49
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:64018076 original size:56 final size:57
Alignment explanation
Indices: 64017969--64018096 Score: 224
Period size: 56 Copynumber: 2.3 Consensus size: 57
64017959 AAAATTGTAC
64017969 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTG-AAATATAT
*
64018027 AGCACTAAGTGTGCGAGCTG-AAA-ATATAGCACTAAGTGTGCGAGCTGAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAATATAT
64018082 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64018097 GATTCACTAT
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
55 23 0.33
56 24 0.35
57 3 0.04
58 19 0.28
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAATATAT
Found at i:64021280 original size:76 final size:79
Alignment explanation
Indices: 64021148--64021328 Score: 237
Period size: 76 Copynumber: 2.3 Consensus size: 79
64021138 CGAATGATGT
* *
64021148 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATT-TGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
64021213 TGCGAGTTACTA-AA
65 TGCGAGTTACTATAA
* * **
64021227 TCC-GGCTAAGT-CCGAAGGCATTTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
64021288 GTGCGAGTTACTATAA
64 GTGCGAGTTACTATAA
*
64021304 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
64021329 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
75 1 0.01
76 44 0.49
77 12 0.13
78 23 0.26
79 8 0.09
80 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGTTACTATAA
Found at i:64021342 original size:40 final size:40
Alignment explanation
Indices: 64021147--64021328 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
64021137 TCGAATGATG
* * *
64021147 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
64021187 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
64021227 TCC-GGCTAAGT-CCGAAGGCA-TT-TGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64021263 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64021304 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64021329 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 8, Indels: 14
0.85 0.05 0.09
Matches are distributed among these distances:
36 17 0.13
37 9 0.07
38 19 0.15
39 8 0.06
40 64 0.50
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64025892 original size:48 final size:48
Alignment explanation
Indices: 64025823--64026298 Score: 735
Period size: 48 Copynumber: 10.0 Consensus size: 48
64025813 AAGAAATAAT
64025823 ATATATATGTG-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
64025870 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
64025918 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
64025966 ATATATA--TGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
64026012 ATGTATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
64026060 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
64026108 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGACGAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
64026156 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
** *
64026204 ATATAT-TAAGATATGTATATGTGGTAAATCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
64026251 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
64026299 TGTTGCAACA
Statistics
Matches: 390, Mismatches: 35, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
46 42 0.11
47 55 0.14
48 293 0.75
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATATATGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:64026001 original size:142 final size:143
Alignment explanation
Indices: 64025834--64026298 Score: 763
Period size: 142 Copynumber: 3.3 Consensus size: 143
64025824 TATATATGTG
* *
64025834 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAA
1 TATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAA
64025899 GCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
66 GCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
64025964 AAATATA-TATGA
131 AAATATAGTATGA
* *
64025976 TATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATGTATGTGTGATATGTATATGTGGTAAA
1 TATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAA
64026041 GCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
66 GCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
64026106 AAATATATGTGTGA
131 AAATATA-GTATGA
* * * *
64026120 TATGTAGATGTGGTAAAGCCGAATGACGAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
1 TATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAA
* * * *
64026185 GCCGAATGGCTAATGTGAAATATAT-TAAGATATGTATATGTGGTAAATCCGAATGGCTAATGTG
66 GCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
64026249 AAATATATGTGTGA
131 AAATATA-GTATGA
*
64026263 TATGTAGATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
64026299 TGTTGCAACA
Statistics
Matches: 306, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
142 135 0.44
143 85 0.28
144 86 0.28
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (143 bp):
TATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATATGTGTGATATGTATATGTGGTAAA
GCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
AAATATAGTATGA
Found at i:64026485 original size:37 final size:37
Alignment explanation
Indices: 64026351--64026470 Score: 222
Period size: 37 Copynumber: 3.2 Consensus size: 37
64026341 ATTCTTGGTG
64026351 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
64026388 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
* *
64026425 AGACCCAATGACTACGTGTGGAGAGTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
64026462 AGACCCGAT
1 AGACCCGAT
64026471 AACTTTTTGT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.23
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
Found at i:64028285 original size:49 final size:49
Alignment explanation
Indices: 64028160--64028508 Score: 526
Period size: 49 Copynumber: 7.4 Consensus size: 49
64028150 ATTTACATTA
64028160 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
64028209 GCCA-TAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
64028257 GCCGTTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
64028306 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCA-CACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
64028354 GCCATTAGG-----------ATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
64028392 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCGCATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
64028441 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
64028490 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
64028509 CATATGTATA
Statistics
Matches: 279, Mismatches: 8, Indels: 26
0.89 0.03 0.08
Matches are distributed among these distances:
37 21 0.08
38 16 0.06
48 63 0.23
49 179 0.64
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:64028370 original size:135 final size:136
Alignment explanation
Indices: 64028160--64028495 Score: 478
Period size: 135 Copynumber: 2.4 Consensus size: 136
64028150 ATTTACATTA
* *
64028160 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCA-TAGGCCTTATC
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGG-------
* *
64028224 ACATATACATACACTTTCACATTCACCACATCGGCCGTTAGGCCTTATCACATATACATACACTT
59 ----ATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTT
64028289 TCACATTCACCACATCG
120 TCACATTCACCACATCG
64028306 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCA-CACATCGGCCATTAGGATACATA
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGATACATA
*
64028370 CACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
66 CACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
64028435 GCATCG
131 ACATCG
* * *
64028441 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTGGCCATT
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATT
64028496 CGGCCTTATC
Statistics
Matches: 180, Mismatches: 8, Indels: 14
0.89 0.04 0.07
Matches are distributed among these distances:
135 114 0.63
136 11 0.06
145 11 0.06
146 44 0.24
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.29
Consensus pattern (136 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGATACATA
CACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
ACATCG
Found at i:64028376 original size:37 final size:38
Alignment explanation
Indices: 64028326--64028400 Score: 143
Period size: 37 Copynumber: 2.0 Consensus size: 38
64028316 CTCATCACAT
64028326 ATACATACACTTTCACATTCA-CACATCGGCCATTAGG
1 ATACATACACTTTCACATTCACCACATCGGCCATTAGG
64028363 ATACATACACTTTCACATTCACCACATCGGCCATTAGG
1 ATACATACACTTTCACATTCACCACATCGGCCATTAGG
64028401 CCTCATCACA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 21 0.57
38 16 0.43
ACGTcount: A:0.32, C:0.31, G:0.11, T:0.27
Consensus pattern (38 bp):
ATACATACACTTTCACATTCACCACATCGGCCATTAGG
Found at i:64031594 original size:26 final size:25
Alignment explanation
Indices: 64031548--64031596 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
64031538 AATGTATTGT
64031548 ATTTATTATTATTATAGATCTTATC
1 ATTTATTATTATTATAGATCTTATC
*
64031573 ATTTA-TATATATATATATATCTTA
1 ATTTATTAT-TAT-TATAGATCTTA
64031597 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 8 0.38
26 10 0.48
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (25 bp):
ATTTATTATTATTATAGATCTTATC
Found at i:64031830 original size:11 final size:11
Alignment explanation
Indices: 64031776--64031835 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
64031766 ATGTTTAATA
64031776 TTATATAT-TT
1 TTATATATATT
*
64031786 TTCATATATGTT
1 TT-ATATATATT
* *
64031798 ATATATAAGTCTT
1 TTATAT-A-TATT
64031811 TTAATATATATT
1 TT-ATATATATT
64031823 TTATATATATT
1 TTATATATATT
64031834 TT
1 TT
64031836 TTAATGTTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 2 0.05
11 21 0.51
12 9 0.22
13 5 0.12
14 4 0.10
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (11 bp):
TTATATATATT
Found at i:64031837 original size:25 final size:25
Alignment explanation
Indices: 64031777--64031840 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
64031767 TGTTTAATAT
* *
64031777 TATATA-TTTTTCATATATGTTATA
1 TATATATTTTTTAATATATATTATA
* *
64031801 TATA-AGTCTTTTAATATATATTTTA
1 TATATA-TTTTTTAATATATATTATA
64031826 TATATATTTTTTAAT
1 TATATATTTTTTAAT
64031841 GTTACTAGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.03
24 4 0.12
25 26 0.81
26 1 0.03
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (25 bp):
TATATATTTTTTAATATATATTATA
Found at i:64031892 original size:21 final size:23
Alignment explanation
Indices: 64031868--64031909 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
64031858 ATGTATACCT
64031868 CTAATA-TTATA-TTATATATTC
1 CTAATACTTATATTTATATATTC
*
64031889 CTAATACTTGTATTTATATAT
1 CTAATACTTATATTTATATAT
64031910 ATGCATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 4 0.22
23 8 0.44
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (23 bp):
CTAATACTTATATTTATATATTC
Found at i:64033407 original size:28 final size:28
Alignment explanation
Indices: 64033374--64033475 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
64033364 ATTACATGAC
*
64033374 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
64033402 TATGAAAGTGATTGGGCTTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
64033430 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
64033458 TATGAATGAGATTGGGCC
1 TATGAATGTGATTGGGCC
64033476 CAAAGGGGCC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.24, C:0.15, G:0.35, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:64033493 original size:29 final size:28
Alignment explanation
Indices: 64033374--64033493 Score: 98
Period size: 28 Copynumber: 4.2 Consensus size: 28
64033364 ATTACATGAC
* ** *
64033374 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGAGATTGGGCCCAAGGGGCCA
* * *** *
64033402 TATGAAAGTGATTGGGCTTGATGGGCCA
1 TATGAATGAGATTGGGCCCAAGGGGCCA
* * *
64033430 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGAGATTGGGCCCAAGGGGCCA
64033458 TATGAATGAGATTGGGCCCAAAGGGGCC-
1 TATGAATGAGATTGGGCCC-AAGGGGCCA
64033486 TAATGAAT
1 T-ATGAAT
64033494 AAGTATGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 69 0.85
29 12 0.15
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.25
Consensus pattern (28 bp):
TATGAATGAGATTGGGCCCAAGGGGCCA
Found at i:64035770 original size:74 final size:75
Alignment explanation
Indices: 64035680--64035828 Score: 264
Period size: 74 Copynumber: 2.0 Consensus size: 75
64035670 TACACAAAAC
*
64035680 ACAAAATACACAAAATTTTAGCATAACCATGTTGAGTCGAATTTTTCTCACTCTT-AAAAAGTCC
1 ACAAAATACACAAAATTTCAGCATAACCATGTTGAGTCGAATTTTTCTCACTCTTAAAAAAGTCC
64035744 AATATTTAAT
66 AATATTTAAT
* *
64035754 ACAAAATACATAAAATTTCAGCATACCCATGTTGAGTCGAATTTTTCTCACTCTTAAAAAAGTCC
1 ACAAAATACACAAAATTTCAGCATAACCATGTTGAGTCGAATTTTTCTCACTCTTAAAAAAGTCC
64035819 AATATTTAAT
66 AATATTTAAT
64035829 GTATTTTACA
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
74 52 0.73
75 19 0.27
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (75 bp):
ACAAAATACACAAAATTTCAGCATAACCATGTTGAGTCGAATTTTTCTCACTCTTAAAAAAGTCC
AATATTTAAT
Found at i:64044169 original size:43 final size:43
Alignment explanation
Indices: 64044099--64044207 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 43
64044089 AGGATCTACG
* * * *
64044099 ATATGTGATTGCGTGCAAGACCATGTCTTGGACA-TCGGCATCGT
1 ATATGTGATTACGTGTAAGACCATGTCTAGGACAGT-GGCATC-A
*
64044143 ATATGTGATT-CGTGTAAGACCCTGTCTAGGACAGTGGCATCA
1 ATATGTGATTACGTGTAAGACCATGTCTAGGACAGTGGCATCA
*
64044185 ATATGTGATTACATGTAAGACCA
1 ATATGTGATTACGTGTAAGACCA
64044208 CATTTGGGAC
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 10 0.18
43 36 0.63
44 11 0.19
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
ATATGTGATTACGTGTAAGACCATGTCTAGGACAGTGGCATCA
Found at i:64046181 original size:48 final size:48
Alignment explanation
Indices: 64046121--64046226 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
64046111 CGGCCACAAT
* *
64046121 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
64046169 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
64046217 ACATATATAT
1 ATATACATAT
64046227 ATTTATCTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:64058972 original size:37 final size:36
Alignment explanation
Indices: 64058922--64059008 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
64058912 TACGAAGTCT
*
64058922 TACCCGGACATAATCTCCACTCGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
64058958 ATACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
64058995 TCACCCGGAACATA
1 T-ACCCGG-ACATA
64059009 TTTCTAAGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.87
38 5 0.11
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:64059147 original size:49 final size:49
Alignment explanation
Indices: 64059078--64059572 Score: 864
Period size: 49 Copynumber: 10.1 Consensus size: 49
64059068 TTACCACATG
* *
64059078 TATATATGCACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
* *
64059127 TATATATACATTTTCACATTCATCACATCTGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
64059176 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
64059225 TATCTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
64059274 TATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
64059323 TATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
64059372 TATATATACACTTTCACATTCATCACCTCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
64059421 TATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
* *
64059470 TATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
* * *
64059519 TATATATACATTTTCATATTCATCACATCGGCAATTAGGCCTTATCACA
1 TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
64059568 TATAT
1 TATAT
64059573 TATTATGTAC
Statistics
Matches: 431, Mismatches: 15, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 431 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
Found at i:64062591 original size:29 final size:29
Alignment explanation
Indices: 64062558--64062746 Score: 238
Period size: 29 Copynumber: 6.5 Consensus size: 29
64062548 GTGACGAGAT
64062558 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64062587 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64062616 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64062645 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
64062674 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
64062703 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
64062732 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
64062747 GAAATCATTA
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
28 2 0.01
29 137 0.98
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:64069122 original size:40 final size:40
Alignment explanation
Indices: 64069040--64069206 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
64069030 AAATTGAATG
* * ** ***
64069040 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGTT
* * *
64069079 ATATCCGGGTTAAGACCCAAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGTT
* **
64069119 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGGTT
* *
64069159 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-TGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-AGTGGTT
64069199 ATATCCGG
1 ATATCCGG
64069207 TTATATTCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
39 16 0.16
40 83 0.81
41 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGTT
Found at i:64078899 original size:29 final size:29
Alignment explanation
Indices: 64078866--64079053 Score: 238
Period size: 29 Copynumber: 6.5 Consensus size: 29
64078856 GTGACGAGAT
64078866 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64078895 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64078924 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64078953 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* * * ***
64078982 CGGCACT-GGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
64079010 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
64079039 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
64079054 GAAATCGAGT
Statistics
Matches: 140, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
28 22 0.16
29 118 0.84
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:64082251 original size:80 final size:80
Alignment explanation
Indices: 64082167--64082315 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
64082157 TATGGTAACC
* * * *
64082167 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
64082231 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
64082247 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
64082312 CCGG
66 CCGG
64082316 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:64082257 original size:40 final size:38
Alignment explanation
Indices: 64082208--64082315 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
64082198 ATCACGATTT
*
64082208 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
64082248 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
64082288 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
64082316 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:64085528 original size:66 final size:68
Alignment explanation
Indices: 64085452--64085638 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
64085442 TAGTACCACT
*
64085452 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
64085514 CACG
65 CACG
64085518 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
64085583 ATCACG
63 ATCACG
64085589 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
64085639 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:64085563 original size:71 final size:71
Alignment explanation
Indices: 64085475--64085638 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64085465 CGATTTGTCT
64085475 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64085540 CTTTCA
66 CTTTCA
64085546 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64085611 CTTTCA
66 CTTTCA
64085617 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64085639 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64085676 original size:71 final size:70
Alignment explanation
Indices: 64085475--64085672 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
64085465 CGATTTGTCT
* * *
64085475 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64085540 CTTTCA
65 CTTTCA
* * *
64085546 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64085611 CTTTCA
65 CTTTCA
* *
64085617 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
64085673 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64089049 original size:66 final size:68
Alignment explanation
Indices: 64088973--64089159 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
64088963 TAGTACCACT
*
64088973 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
64089035 CACG
65 CACG
64089039 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
64089104 ATCACG
63 ATCACG
64089110 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
64089160 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:64089084 original size:71 final size:71
Alignment explanation
Indices: 64088996--64089159 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64088986 CGATTTGTCT
64088996 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64089061 CTTTCA
66 CTTTCA
64089067 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64089132 CTTTCA
66 CTTTCA
64089138 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64089160 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64089197 original size:71 final size:70
Alignment explanation
Indices: 64088996--64089193 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
64088986 CGATTTGTCT
* * *
64088996 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64089061 CTTTCA
65 CTTTCA
* * *
64089067 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64089132 CTTTCA
65 CTTTCA
* *
64089138 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
64089194 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64096632 original size:80 final size:80
Alignment explanation
Indices: 64096548--64096696 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
64096538 TATGGTAACC
* * * *
64096548 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
64096612 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
64096628 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
64096693 CCGG
66 CCGG
64096697 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:64096638 original size:40 final size:38
Alignment explanation
Indices: 64096589--64096696 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
64096579 ATCACGATTT
*
64096589 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
64096629 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
64096669 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
64096697 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:64102459 original size:30 final size:30
Alignment explanation
Indices: 64102401--64102459 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
64102391 ATTTTCGAGC
* **
64102401 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
64102431 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
64102460 AAGTGAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:64102869 original size:47 final size:48
Alignment explanation
Indices: 64102795--64102925 Score: 173
Period size: 47 Copynumber: 2.8 Consensus size: 48
64102785 GGTTATTGTG
* *
64102795 AGCTGGTGTAAGACATGTCTGGGACATGGCATTGGCAT-CGAGACG-T
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATACGAGACGAT
*
64102841 AAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-TACGAGATGAT
1 -AGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATACGAGACGAT
64102888 AG-TAAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGCT-AGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
64102926 CCTTACCCCA
Statistics
Matches: 75, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
45 2 0.03
46 24 0.32
47 41 0.55
48 8 0.11
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.23
Consensus pattern (48 bp):
AGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATACGAGACGAT
Found at i:64114774 original size:178 final size:178
Alignment explanation
Indices: 64114465--64114827 Score: 595
Period size: 178 Copynumber: 2.0 Consensus size: 178
64114455 AATCCCCAAC
* * *
64114465 TTTCTAAAAGTAGATAGTGGCATTAGGTTAATGCTACTTCCCAAGTCGCATAAAGCATTGCTCAA
1 TTTCCAAAAGTAGATAATGGCATTAGGTTAATGCTACTTCCCAAGTCGCATAAAACATTGCTCAA
64114530 ATAATGGTTTCCAATTGAACATGGGATAGTAAAGCTCCCAGGATCTTTCATTTTGGGGGCAACTT
66 ATAATGGTTTCCAATTGAACATGGGATAGTAAAGCTCCCAGGATCTTTCATTTTGGGGGCAACTT
* *
64114595 ATTTGTCAAAATAGCACA-ATAGCCTTCTGTGAGTGCAATAA-TCTAGAA
131 ATTTGTCAAAACAGCA-ATACAGCCTTCTGTGAGTGCAATAATTC-AGAA
* * *
64114643 TTTCCAAAAGTAGATAATGGCATTAGGTTAATGCTAGTTCCCAAGTCGCATAAAACCTTGCTTAA
1 TTTCCAAAAGTAGATAATGGCATTAGGTTAATGCTACTTCCCAAGTCGCATAAAACATTGCTCAA
*
64114708 ATAATGGTTTCCAATTGAACATGGGATAGTAAAGCTCCCAGGATCTTTCATTTTGGGGGTAACTT
66 ATAATGGTTTCCAATTGAACATGGGATAGTAAAGCTCCCAGGATCTTTCATTTTGGGGGCAACTT
* *
64114773 ATTTGTCAAAACAGCAATACAGCTTTTTGTGAGTGCAATAATTCAGAA
131 ATTTGTCAAAACAGCAATACAGCCTTCTGTGAGTGCAATAATTCAGAA
64114821 TTTCCAA
1 TTTCCAA
64114828 TAATTCCAAT
Statistics
Matches: 172, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
177 1 0.01
178 169 0.98
179 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (178 bp):
TTTCCAAAAGTAGATAATGGCATTAGGTTAATGCTACTTCCCAAGTCGCATAAAACATTGCTCAA
ATAATGGTTTCCAATTGAACATGGGATAGTAAAGCTCCCAGGATCTTTCATTTTGGGGGCAACTT
ATTTGTCAAAACAGCAATACAGCCTTCTGTGAGTGCAATAATTCAGAA
Found at i:64118366 original size:26 final size:27
Alignment explanation
Indices: 64118305--64118490 Score: 211
Period size: 26 Copynumber: 7.0 Consensus size: 27
64118295 TTAATAAATG
* *
64118305 CCTCGATTTGTAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
64118332 CCTCGATTTATAGAATTA-CGTTTCAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
64118358 CCTCGATTTACAAAATTACCGTTTTA-
1 CCTCGATTTATAGAATTACCGTTTTAC
*
64118384 CCTCGATTTATAGAATTA-CATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
64118410 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
64118437 CCT-GATTTACAAAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * * *
64118463 CATC-AGTTTACAAAATTATCGTTTTAC
1 CCTCGA-TTTATAGAATTACCGTTTTAC
64118490 C
1 C
64118491 TTCAATTGTG
Statistics
Matches: 138, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
25 6 0.04
26 79 0.57
27 53 0.38
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCGTTTTAC
Found at i:64118422 original size:78 final size:79
Alignment explanation
Indices: 64118305--64118463 Score: 268
Period size: 78 Copynumber: 2.0 Consensus size: 79
64118295 TTAATAAATG
*
64118305 CCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTA-CGTTTCACCCTCGATTTAC
1 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCT-GATTTAC
*
64118369 AAAATTACCGTTTTA
65 AAAATTACCATTTTA
*
64118384 CCTCGATTTATAGAATTA-CATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTGATTTACA
1 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTGATTTACA
64118448 AAATTACCATTTTA
66 AAATTACCATTTTA
64118462 CC
1 CC
64118464 ATCAGTTTAC
Statistics
Matches: 76, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
78 49 0.64
79 27 0.36
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (79 bp):
CCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTGATTTACA
AAATTACCATTTTA
Found at i:64118507 original size:105 final size:105
Alignment explanation
Indices: 64118305--64118497 Score: 255
Period size: 105 Copynumber: 1.8 Consensus size: 105
64118295 TTAATAAATG
* * * * *
64118305 CCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACGTTTCACCCTCGATTTACA
1 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACATTTCACCATCGATTTACA
* *
64118370 AAATTACCGTTTTACCTCGATTTATAGAATTACATTTTAC
66 AAATTACCGTTTTACCTCAATTTAGAGAATTACATTTTAC
* *
64118410 CCTCGATTTATAGAATTACCGTTTTACCCT-GATTTACAAAATTACCATTTTACCATC-AGTTTA
1 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTA-CATTTCACCATCGA-TTTA
*
64118473 CAAAATTATCGTTTTACCTTCAATT
64 CAAAATTACCGTTTTACC-TCAATT
64118498 GTGAAATTAC
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
104 13 0.17
105 58 0.76
106 5 0.07
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (105 bp):
CCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACATTTCACCATCGATTTACA
AAATTACCGTTTTACCTCAATTTAGAGAATTACATTTTAC
Found at i:64118568 original size:54 final size:54
Alignment explanation
Indices: 64118496--64118651 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 54
64118486 TTACCTTCAA
* ** *
64118496 TTGTGAAATTACTGAAATACTTCT-GTAGGATAGAATTACCAAAATACCACTAGT
1 TTGTGAAATTACCGAAATACCACTAGTAGG-TAAAATTACCAAAATACCACTAGT
* * ** *
64118550 TTGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCGAAATACCACTAGT
1 TTGTGAAATTACCGAAATACCACTAGTAGGTAAAATTACCAAAATACCACTAGT
* **
64118604 TTGTGAAATTACCGAAATACC-CTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCACT-AGTAGGTAAAATTACCAAAATACC
64118652 CTGATTTACA
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 2 0.02
54 82 0.94
55 3 0.03
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCACTAGTAGGTAAAATTACCAAAATACCACTAGT
Found at i:64118653 original size:27 final size:27
Alignment explanation
Indices: 64118529--64118651 Score: 194
Period size: 27 Copynumber: 4.6 Consensus size: 27
64118519 TGTAGGATAG
64118529 AATTACCAAAATACCACTAGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAA
64118556 AATTACCAAAATACCACTAGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAA
* *
64118583 AATTACCGAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCACTAGTTTGTAA
* *
64118610 AATTACCGAAATACC-CTCAATTTGTAA
1 AATTACCAAAATACCACT-AGTTTGTAA
64118637 AATTACCAAAATACC
1 AATTACCAAAATACC
64118652 CTGATTTACA
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 2 0.02
27 88 0.98
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCACTAGTTTGTAA
Found at i:64118737 original size:27 final size:27
Alignment explanation
Indices: 64118645--64118740 Score: 101
Period size: 26 Copynumber: 3.6 Consensus size: 27
64118635 AAAATTACCA
*
64118645 AAATACCC-TGATTTACAAAATTATAG
1 AAATACCCTTGGTTTACAAAATTATAG
*
64118671 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTG-GTTTAC--AAAATTATAG
*
64118700 AAATA-CATTGGTTTACAAAATTACT-G
1 AAATACCCTTGGTTTACAAAATTA-TAG
64118726 AAATACCCTTGGTTT
1 AAATACCCTTGGTTT
64118741 GTAGATTTAC
Statistics
Matches: 59, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
26 21 0.36
27 15 0.25
28 8 0.14
29 15 0.25
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATACCCTTGGTTTACAAAATTATAG
Found at i:64118821 original size:26 final size:26
Alignment explanation
Indices: 64118794--64118853 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
64118784 ACCCCTAATA
64118794 GGTAAAAAGACCGTAA-AGCCCTTGTAG
1 GGTAAAAAGA-CGTAATA-CCCTTGTAG
** *
64118821 GGTAAAGTGACGTAATACCCTTGTAT
1 GGTAAAAAGACGTAATACCCTTGTAG
64118847 GGTAAAA
1 GGTAAAA
64118854 TGATGAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (26 bp):
GGTAAAAAGACGTAATACCCTTGTAG
Found at i:64119696 original size:25 final size:24
Alignment explanation
Indices: 64119662--64119730 Score: 104
Period size: 24 Copynumber: 2.8 Consensus size: 24
64119652 AGGAAGTGCT
64119662 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
64119686 GAAAAGGGCTTTGCCCC-GTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
64119710 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
64119731 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 1 0.02
24 21 0.51
25 19 0.46
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:64119715 original size:24 final size:25
Alignment explanation
Indices: 64119662--64119730 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
64119652 AGGAAGTGCT
*
64119662 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACAG
64119687 AAAAGGGCTTTGCCCC-GTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTA-CAG
64119712 -AAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
64119731 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
24 20 0.49
25 21 0.51
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACAG
Found at i:64119743 original size:24 final size:24
Alignment explanation
Indices: 64119661--64119743 Score: 98
Period size: 24 Copynumber: 3.4 Consensus size: 24
64119651 GAGGAAGTGC
*
64119661 TAAAAGGGCTTTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
64119686 GAAAAGGGCTTTGCCCC-GTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
64119709 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
64119733 TAAAAGAGGCT
1 TAAAAG-GGCT
64119744 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
23 5 0.10
24 29 0.57
25 17 0.33
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:64119935 original size:42 final size:42
Alignment explanation
Indices: 64119884--64120007 Score: 225
Period size: 42 Copynumber: 3.0 Consensus size: 42
64119874 CCCCAAATGG
64119884 TTGCATACATTCATTGACATTACATGTGATATTGAAATGGGC
1 TTGCATACATTCATTGACATTACATGTGATATTGAAATGGGC
64119926 TTGCATACATTCATTGACATTACATGTGATATTGAAAT-GGC
1 TTGCATACATTCATTGACATTACATGTGATATTGAAATGGGC
*
64119967 TTGCA-ACATCCATTGACATTACATGTGATATTGAAATGGGC
1 TTGCATACATTCATTGACATTACATGTGATATTGAAATGGGC
64120008 CTAAGGGCCA
Statistics
Matches: 80, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
40 31 0.39
41 11 0.14
42 38 0.47
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (42 bp):
TTGCATACATTCATTGACATTACATGTGATATTGAAATGGGC
Found at i:64120083 original size:30 final size:31
Alignment explanation
Indices: 64120031--64120113 Score: 134
Period size: 30 Copynumber: 2.7 Consensus size: 31
64120021 CGTTTACAGT
*
64120031 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
64120062 AAAGGCTTCGGCCCA-TGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
64120092 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
64120114 TCAAGACTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
30 34 0.69
31 15 0.31
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:64122393 original size:27 final size:27
Alignment explanation
Indices: 64122352--64122542 Score: 249
Period size: 27 Copynumber: 7.1 Consensus size: 27
64122342 TACTGAAATG
**
64122352 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * * *
64122379 CCTTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
64122406 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
64122433 GCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
64122460 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
64122487 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
64122514 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
64122541 CC
1 CC
64122543 TTCAATTATG
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 1 0.01
27 146 0.99
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:64122467 original size:81 final size:81
Alignment explanation
Indices: 64122352--64122542 Score: 276
Period size: 81 Copynumber: 2.4 Consensus size: 81
64122342 TACTGAAATG
* * * *
64122352 CCCTCGATTTGTAGAATTACCATTTTACCTTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATTTA
*
64122417 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
* *
64122433 GCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATTTA
64122498 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
64122514 CCCTC-AGTTTACAAAATTACCGTTTTACC
1 CCCTCGA-TTTATAGAATTACCATTTTACC
64122543 TTCAATTATG
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 97 0.99
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:64122610 original size:26 final size:26
Alignment explanation
Indices: 64122581--64122697 Score: 123
Period size: 27 Copynumber: 4.5 Consensus size: 26
64122571 TGTAGGATAG
64122581 AATTACCAAAATACCCTAGTTTGTAA
1 AATTACCAAAATACCCTAGTTTGTAA
* * *
64122607 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACC-CTAGTTTGTAA
* *
64122634 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AGTTTGTAA
**
64122661 AATTA-CAAAATACCCT-GATTTACAA
1 AATTACCAAAATACCCTAG-TTTGTAA
64122686 AATTA-CAAAATA
1 AATTACCAAAATA
64122698 TCCTTGACTT
Statistics
Matches: 78, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
25 17 0.22
26 26 0.33
27 35 0.45
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:64122610 original size:53 final size:53
Alignment explanation
Indices: 64122553--64122675 Score: 135
Period size: 53 Copynumber: 2.3 Consensus size: 53
64122543 TTCAATTATG
*
64122553 AAATTACTGAAATACCCCT-GTAGGAT-AGAATTACCAAAATACCCT-AGTTTGTA
1 AAATTAC-GAAATACCCCTGGTAGG-TGA-AATTACCAAAATACCCTCAATTTGTA
* ** *
64122606 AAATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTA
1 AAATTA-CGAAATACCCCTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTA
*
64122660 AAATTACAAAATACCC
1 AAATTACGAAATACCC
64122676 TGATTTACAA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
53 41 0.69
54 18 0.31
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (53 bp):
AAATTACGAAATACCCCTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTA
Found at i:64122751 original size:27 final size:26
Alignment explanation
Indices: 64122712--64122762 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
64122702 TGACTTTCTA
64122712 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACC-TTGGTTTAC
64122739 AAAATTACT-GAAATACCTTGGTTT
1 AAAATTA-TAGAAATACCTTGGTTT
64122763 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.30
27 15 0.65
28 1 0.04
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (26 bp):
AAAATTATAGAAATACCTTGGTTTAC
Found at i:64123727 original size:25 final size:24
Alignment explanation
Indices: 64123689--64123758 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
64123679 AGGAAGTGCT
*
64123689 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
64123713 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
* *
64123738 AGAAAGGGCCTTGCCCTAGTT
1 A-AAAGGGCTTTGCCCCAGTT
64123759 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:64123951 original size:13 final size:13
Alignment explanation
Indices: 64123933--64123959 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64123923 TTCATTGACA
64123933 TTACATGTGATAT
1 TTACATGTGATAT
64123946 TTACATGTGATAT
1 TTACATGTGATAT
64123959 T
1 T
64123960 GAAATGGGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (13 bp):
TTACATGTGATAT
Found at i:64124053 original size:30 final size:31
Alignment explanation
Indices: 64123992--64124105 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
64123982 CGTTTACAGT
*
64123992 AAAGGCTTCGGCCCTGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
64124023 AAAGGCTTCGGCCCAGTGATATGA-TTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
64124053 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
64124084 AAAGGCTTCAGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
64124106 TCAAGACTAA
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
30 35 0.45
31 43 0.55
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:64124072 original size:61 final size:60
Alignment explanation
Indices: 64123992--64124105 Score: 183
Period size: 61 Copynumber: 1.9 Consensus size: 60
64123982 CGTTTACAGT
* *
64123992 AAAGGCTTCGGCCCTGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCAGCCCAGT-ATATGATTATGA
* *
64124053 AAAGGCTTCGGCCCAGTGATATGATTTATGGAAAGGCTTCAGCCTAGTATATG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCAGCCCAGTATATG
64124106 TCAAGACTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
60 5 0.10
61 44 0.90
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (60 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCAGCCCAGTATATGATTATGA
Found at i:64125786 original size:29 final size:29
Alignment explanation
Indices: 64125752--64125824 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
64125742 AATCAACCAC
* *
64125752 GCACACTTAGTGCCATGTACTTT-AAACTT
1 GCACACTTAGTGCCATGCA-TTTCAAACCT
*
64125781 GCACACTTAGTGCCATGCATTTCAAGCCT
1 GCACACTTAGTGCCATGCATTTCAAACCT
64125810 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
64125825 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATGCATTTCAAACCT
Done.