Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 205 of 433
Found at i:64698292 original size:93 final size:92
Alignment explanation
Indices: 64698070--64698420 Score: 396
Period size: 93 Copynumber: 3.8 Consensus size: 92
64698060 ATTGTTGGCT
* *
64698070 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-ACATTACGAGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATT---A-AGCCAGTGTAAGACCATGT
* *
64698131 CTGGGACATGGCATCGACATTA-AGATGAGAGTT
62 CTGGGACAT-GCATCGAC--TACAGATGATAGTC
* *
64698164 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCCAGTGTAAGA-CATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGAT-TAAGCCAGTGTAAGACCATGTCT
64698226 GGGACATGCATCGACTACGAGATGATAGTC
64 GGGACATGCATCGACTAC-AGATGATAGTC
* *
64698256 AGTGTAAGACCATGTTTGGGACATGGCATCGACTCGAGACTTAAGCTAGTGTAAGA-CATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGA-TTAAGCCAGTGTAAGACCATGTCTG
*
64698320 GGACATGCATCGGCTACAAGATGATAGTC
65 GGACATGCATCGACTAC-AGATGATAGTC
* * * * *
64698349 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGACATGAGCCAGTGTAAAACCATGTCTA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGA-TTAAGCCAGTGTAAGACCATGTCTG
64698414 GGACATG
65 GGACATG
64698421 GCATGGGCAC
Statistics
Matches: 229, Mismatches: 18, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
90 2 0.01
92 26 0.11
93 132 0.58
94 61 0.27
95 3 0.01
96 1 0.00
97 3 0.01
98 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (92 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATTAAGCCAGTGTAAGACCATGTCTGG
GACATGCATCGACTACAGATGATAGTC
Found at i:64698363 original size:140 final size:139
Alignment explanation
Indices: 64698070--64698424 Score: 434
Period size: 140 Copynumber: 2.5 Consensus size: 139
64698060 ATTGTTGGCT
* * * *
64698070 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTACGAGAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGACTACGA-GA-GATAGCCAGTGTAAGACCATGTCTG
* * *
64698134 GGACATGGCATCGACATTAAGATGAGAGTTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG
64 GGACATGGCATCGACATCAAGATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCA
64698199 AGATGTAAGCC
129 AGATGTAAGCC
* * *
64698210 AGTGTAAGACATGTTTGGGACATGCATCGACTACGAGATGATAGTCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGA-GATAGCCAGTGTAAGACCATGTCTGG
* *
64698275 GACATGGCATCGAC-TCGAGACTTA-AGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTAC
65 GACATGGCATCGACATCAAGA-TGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-C
*
64698337 AAGATG-ATAGTC
128 AAGATGTA-AGCC
* * *
64698349 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGACATGAGCCAGTGTAAAACCATGTCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAGAGAT-AGCCAGTGTAAGACCATGTCT
*
64698413 AGGACATGGCAT
63 GGGACATGGCAT
64698425 GGGCACCTTA
Statistics
Matches: 187, Mismatches: 21, Indels: 14
0.84 0.09 0.06
Matches are distributed among these distances:
138 3 0.02
139 57 0.30
140 117 0.63
141 10 0.05
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (139 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGAGATAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGACATCAAGATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAG
ATGTAAGCC
Found at i:64698399 original size:47 final size:47
Alignment explanation
Indices: 64698070--64698424 Score: 306
Period size: 47 Copynumber: 7.6 Consensus size: 47
64698060 ATTGTTGGCT
* * *
64698070 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATTACGA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTC-GA-GA-GATGAGCC
** **
64698116 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTAAGATGA-GAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGAGA-GATGAGCC
* *
64698164 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGA-GATGAGCC
* *
64698210 AGTGTAAGA-CATGTTTGGGACAT-GCATCGACTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGA-GATGAGCC
* ** * *
64698256 AGTGTAAGACCATGTTTGGGACATGGCATCGACTCGAGACTTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGAGATGAGCC
* * *
64698303 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGA-GATGAGCC
* *
64698349 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGACATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGAGATGAGCC
* *
64698396 AGTGTAAAACCATGTCTAGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
64698425 GGGCACCTTA
Statistics
Matches: 259, Mismatches: 34, Indels: 31
0.80 0.10 0.10
Matches are distributed among these distances:
45 11 0.04
46 99 0.38
47 109 0.42
48 39 0.15
49 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGAGATGAGCC
Found at i:64705727 original size:14 final size:13
Alignment explanation
Indices: 64705700--64705733 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
64705690 TCATTCATAT
64705700 TTTTCTTTTC-T-
1 TTTTCTTTTCATC
64705711 TTTTCTTTTCATC
1 TTTTCTTTTCATC
64705724 TTTTCTTTTC
1 TTTTCTTTTC
64705734 TCCATAGTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 1 0.05
13 10 0.48
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTCTTTTCATC
Found at i:64706858 original size:27 final size:27
Alignment explanation
Indices: 64706813--64706926 Score: 124
Period size: 28 Copynumber: 4.2 Consensus size: 27
64706803 TGGAGGAAGC
*
64706813 ATTCTGGTGGCTCGGCCACAAATATCT
1 ATTCTGGTGGCTCTGCCACAAATATCT
*
64706840 GA-TCTGGTGGCTCTACCACAAATATCT
1 -ATTCTGGTGGCTCTGCCACAAATATCT
* *
64706867 ATTTCTGGTGGCCCTGCCACAATTATCT
1 A-TTCTGGTGGCTCTGCCACAAATATCT
* * *
64706895 ATATCTGTTGACTCTGTCAC-AATATCT
1 AT-TCTGGTGGCTCTGCCACAAATATCT
64706922 ATTCT
1 ATTCT
64706927 AGAGCCATGC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.05
27 32 0.44
28 37 0.51
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
ATTCTGGTGGCTCTGCCACAAATATCT
Found at i:64706919 original size:55 final size:55
Alignment explanation
Indices: 64706814--64706924 Score: 134
Period size: 55 Copynumber: 2.0 Consensus size: 55
64706804 GGAGGAAGCA
* *
64706814 TTCTGGTGGCTCGGCCACAAATATCTGATCTGGTGGCTCTACCACAAATATCTAT
1 TTCTGGTGGCCCGGCCACAAATATCTGATCTGGTGACTCTACCACAAATATCTAT
* * * * **
64706869 TTCTGGTGGCCCTGCCACAATTATCTATATCTGTTGACTCTGTCAC-AATATCTAT
1 TTCTGGTGGCCCGGCCACAAATATCT-GATCTGGTGACTCTACCACAAATATCTAT
64706924 T
1 T
64706925 CTAGAGCCAT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
55 33 0.70
56 14 0.30
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (55 bp):
TTCTGGTGGCCCGGCCACAAATATCTGATCTGGTGACTCTACCACAAATATCTAT
Found at i:64708620 original size:43 final size:43
Alignment explanation
Indices: 64708539--64708623 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
64708529 AAATCGTACA
**
64708539 ATGCCAACGTCCCAGACGTGGTCTTACATGTAGTCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATTG
64708582 ATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATT
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACACATATT
64708624 AGAATCACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 33 0.89
44 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATTG
Found at i:64710341 original size:24 final size:24
Alignment explanation
Indices: 64710314--64710400 Score: 147
Period size: 24 Copynumber: 3.6 Consensus size: 24
64710304 CTTATTATGT
*
64710314 TCGCACACATAGTGCCATTGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
64710338 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
64710362 TCACACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
64710386 TCGCACACATAGTGC
1 TCGCACACATAGTGC
64710401 ATTTGAGATT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:64712687 original size:14 final size:14
Alignment explanation
Indices: 64712668--64712711 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
64712658 CATAACTTAT
64712668 ATTATATACATATA
1 ATTATATACATATA
* *
64712682 ATTATATACATTTT
1 ATTATATACATATA
64712696 ATTACTATAACATATA
1 ATTA-TAT-ACATATA
64712712 TATATTGTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 16 0.67
15 3 0.12
16 5 0.21
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTATATACATATA
Found at i:64714165 original size:24 final size:24
Alignment explanation
Indices: 64714128--64714233 Score: 176
Period size: 24 Copynumber: 4.4 Consensus size: 24
64714118 CTGGAGGACT
*
64714128 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
64714153 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
64714177 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
64714201 AGCCCTTTCAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
64714225 AGCCCTTTT
1 AGCCCTTTT
64714234 GCACTTCCTC
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
24 72 0.95
25 4 0.05
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:64714308 original size:20 final size:20
Alignment explanation
Indices: 64714283--64714349 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
64714273 TTATGAATAC
*
64714283 ATCATGTGCCTATCATACAT
1 ATCATGTGCATATCATACAT
64714303 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
64714323 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
64714343 GTCATGT
1 ATCATGT
64714350 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:64714418 original size:25 final size:25
Alignment explanation
Indices: 64714386--64714433 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64714376 ATATATAAAT
* * *
64714386 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
64714411 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64714434 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:64719211 original size:37 final size:37
Alignment explanation
Indices: 64719169--64719249 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
64719159 CGGGGTTTTA
* *
64719169 ACCCGGATAAAATCTCCACACGTGGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
64719206 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
64719243 ACCCGGA
1 ACCCGGA
64719250 ATATATTTCC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.21
Consensus pattern (37 bp):
ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
Found at i:64723632 original size:40 final size:39
Alignment explanation
Indices: 64723566--64723716 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
64723556 AAATTGAATG
* * *
64723566 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
64723605 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
64723645 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
64723685 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
64723717 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:64723730 original size:40 final size:39
Alignment explanation
Indices: 64723603--64723732 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
64723593 ATGCTGGAAA
* *
64723603 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
64723643 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
64723683 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
64723723 TTATATCCGG
1 TTATATCCGG
64723733 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:64731662 original size:40 final size:40
Alignment explanation
Indices: 64731596--64731746 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
64731586 AAATTGAATG
* * *
64731596 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
64731635 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
64731675 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
64731715 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
64731747 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:64731760 original size:40 final size:40
Alignment explanation
Indices: 64731633--64731762 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
64731623 ATGCTGGAAA
* * *
64731633 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
64731673 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
64731713 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
64731753 TTATATCCGG
1 TTATATCCGG
64731763 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:64733252 original size:36 final size:37
Alignment explanation
Indices: 64733202--64733278 Score: 147
Period size: 36 Copynumber: 2.1 Consensus size: 37
64733192 AATCATAAAT
64733202 TCAAGCTCTGGGCTTTGTACATTACACTACAACGATC
1 TCAAGCTCTGGGCTTTGTACATTACACTACAACGATC
64733239 TCAAGCT-TGGGCTTTGTACATTACACTACAACGATC
1 TCAAGCTCTGGGCTTTGTACATTACACTACAACGATC
64733275 TCAA
1 TCAA
64733279 AAACGTAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 33 0.82
37 7 0.17
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (37 bp):
TCAAGCTCTGGGCTTTGTACATTACACTACAACGATC
Found at i:64742624 original size:40 final size:40
Alignment explanation
Indices: 64742520--64742669 Score: 227
Period size: 40 Copynumber: 3.8 Consensus size: 40
64742510 CGGATGATAA
64742520 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
64742560 CC-GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
64742598 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
64742638 CCGGGCTATA-TCCTGAAGGCATTTGAGCGAGT
1 CCGGGCTA-AGTCCCGAAGGCATTTGTGCGAGT
64742670 AGCTATATCC
Statistics
Matches: 103, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
38 31 0.30
39 16 0.16
40 55 0.53
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:64744917 original size:26 final size:26
Alignment explanation
Indices: 64744888--64744952 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
64744878 ATATATAATT
64744888 TATTTATTATAAAAAAACTATAC-ATA
1 TATTTATTATAAAAAAACTAT-CTATA
**
64744914 TA-TTATTATTAAAAGTACTATCTATA
1 TATTTATTA-TAAAAAAACTATCTATA
64744940 TATTTA-TATAAAA
1 TATTTATTATAAAA
64744953 TTTTTATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
25 12 0.35
26 19 0.56
27 3 0.09
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (26 bp):
TATTTATTATAAAAAAACTATCTATA
Found at i:64744999 original size:25 final size:23
Alignment explanation
Indices: 64744936--64745064 Score: 74
Period size: 23 Copynumber: 5.5 Consensus size: 23
64744926 AAGTACTATC
* *
64744936 TATATATTTATATAAAATTTTTA
1 TATATATTTATATTATATTTTTA
* *
64744959 T-T-TATCATATATTAT-TTTCCTA
1 TATATAT-TTATATTATATTT-TTA
64744981 TATATATTTATATTATA-TTTTA
1 TATATATTTATATTATATTTTTA
*
64745003 TTATATAACATT-TATTATATTTTTA
1 -TATAT-A-TTTATATTATATTTTTA
64745028 T-TATATATTACTTATTATATTTTT-
1 TATATAT-TTA--TATTATATTTTTA
64745052 TATTATATGTTAT
1 TA-TATAT-TTAT
64745065 GTATATCGTA
Statistics
Matches: 82, Mismatches: 9, Indels: 29
0.68 0.08 0.24
Matches are distributed among these distances:
21 6 0.07
22 15 0.18
23 20 0.24
24 14 0.17
25 19 0.23
26 8 0.10
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (23 bp):
TATATATTTATATTATATTTTTA
Found at i:64745009 original size:12 final size:12
Alignment explanation
Indices: 64744979--64745059 Score: 76
Period size: 14 Copynumber: 6.4 Consensus size: 12
64744969 ATTATTTTCC
64744979 TATATATATTTA-
1 TATATAT-TTTAT
64744991 TATTATATTTTAT
1 TA-TATATTTTAT
*
64745004 TATATAACATTTAT
1 TATAT-A-TTTTAT
64745018 TATAT-TTTTAT
1 TATATATTTTAT
64745029 TATATATTACTTAT
1 TATATATT--TTAT
*
64745043 TATATTTTTTAT
1 TATATATTTTAT
64745055 TATAT
1 TATAT
64745060 GTTATGTATA
Statistics
Matches: 59, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
11 10 0.17
12 20 0.34
13 8 0.14
14 21 0.36
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (12 bp):
TATATATTTTAT
Found at i:64751383 original size:79 final size:82
Alignment explanation
Indices: 64751267--64751451 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
64751257 ACGACTCGCT
** * *
64751267 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
64751330 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
64751347 CAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
*
64751410 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
64751427 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64751452 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:64751451 original size:40 final size:39
Alignment explanation
Indices: 64751260--64751451 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
64751250 GGATATAACG
* ** * *
64751260 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
64751300 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
64751340 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
64751379 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
64751419 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
64751452 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:64759391 original size:40 final size:40
Alignment explanation
Indices: 64759328--64759446 Score: 125
Period size: 40 Copynumber: 3.0 Consensus size: 40
64759318 ACGAAGCCGT
*
64759328 TATAGTGACTCGCA-GAATGCCTTCGGGTCTTAGCCCGGA
1 TATAGTAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGA
* * * * *
64759367 TTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGA
1 TATAGTAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGA
* * * *
64759407 TATAGTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 TATAGTAAC-TCGCACGAATGCCTTCGGGTCTTAGCCCGGA
64759447 CATCATTCGA
Statistics
Matches: 63, Mismatches: 15, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
39 11 0.17
40 47 0.75
41 5 0.08
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
TATAGTAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGA
Found at i:64767378 original size:40 final size:40
Alignment explanation
Indices: 64767304--64767481 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
64767294 GAGTCACGTA
** *
64767304 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
64767343 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
64767383 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
64767423 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
64767463 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
64767482 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:64770015 original size:42 final size:42
Alignment explanation
Indices: 64769952--64770040 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
64769942 AGCATGAGAC
64769952 TTGAACCCAAGACCTCACACACACACCTAGAACACTTAACCA
1 TTGAACCCAAGACCTCACACACACACCTAGAACACTTAACCA
* *
64769994 TTGAACCTAAGACCTCTCACACACACCTAGAACACTTAACCA
1 TTGAACCCAAGACCTCACACACACACCTAGAACACTTAACCA
*
64770036 CTGAA
1 TTGAA
64770041 GCAGATATGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.39, C:0.36, G:0.08, T:0.17
Consensus pattern (42 bp):
TTGAACCCAAGACCTCACACACACACCTAGAACACTTAACCA
Found at i:64770395 original size:15 final size:15
Alignment explanation
Indices: 64770375--64770403 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64770365 TTATATATTA
64770375 AGTTATAATAATAAT
1 AGTTATAATAATAAT
64770390 AGTTATAATAATAA
1 AGTTATAATAATAA
64770404 AAACAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (15 bp):
AGTTATAATAATAAT
Found at i:64771212 original size:25 final size:25
Alignment explanation
Indices: 64771164--64771212 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
64771154 CGTAATTGAA
* *
64771164 ATGAAATAAATTGATTTTGTATATT
1 ATGAAATAAATTGATTATGAATATT
*
64771189 ATGAAATATATTGATTATGAATAT
1 ATGAAATAAATTGATTATGAATAT
64771213 ATGTGTATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (25 bp):
ATGAAATAAATTGATTATGAATATT
Found at i:64771548 original size:43 final size:43
Alignment explanation
Indices: 64771487--64771569 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
64771477 GTGATTGATA
* *
64771487 TTGAAATAACAAAGATGAGAAATGAATATGAGATGAGAAAATG
1 TTGAAATAACAAAGATGAGAAATGAATACGAAATGAGAAAATG
** *
64771530 TTGAAATGGCAAAGATGAGAAATGATTACGAAATGAGAAA
1 TTGAAATAACAAAGATGAGAAATGAATACGAAATGAGAAA
64771570 TGAAATATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.52, C:0.04, G:0.24, T:0.20
Consensus pattern (43 bp):
TTGAAATAACAAAGATGAGAAATGAATACGAAATGAGAAAATG
Found at i:64774403 original size:36 final size:36
Alignment explanation
Indices: 64774363--64774435 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
64774353 GTTCTTTTGT
*
64774363 TAGAGGTGGTGCTAGAAAGGGAAGTGATACTATTAC
1 TAGAGGTAGTGCTAGAAAGGGAAGTGATACTATTAC
* *
64774399 TAGAGGTAGTTCTAGAAAGGGAAGTGATACTCTTAC
1 TAGAGGTAGTGCTAGAAAGGGAAGTGATACTATTAC
64774435 T
1 T
64774436 CGCCAAACAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (36 bp):
TAGAGGTAGTGCTAGAAAGGGAAGTGATACTATTAC
Found at i:64776647 original size:28 final size:28
Alignment explanation
Indices: 64776563--64776655 Score: 82
Period size: 28 Copynumber: 3.3 Consensus size: 28
64776553 ATTATATGTA
** * * *
64776563 GCACTTAACGTGTGATGTATCGGGGATG
1 GCACTTAGTGTGTGAAGTAACGAGGATG
* * *
64776591 GCACTTAGTGTGCG-A-TACATCCAGAATG
1 GCACTTAGTGTGTGAAGTA-A-CGAGGATG
64776619 GCACTTAGTGTGTGAAGTAACGAGGATG
1 GCACTTAGTGTGTGAAGTAACGAGGATG
64776647 GCACTTAGT
1 GCACTTAGT
64776656 TTATGAAACA
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
26 2 0.04
28 44 0.88
29 2 0.04
30 2 0.04
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (28 bp):
GCACTTAGTGTGTGAAGTAACGAGGATG
Found at i:64776667 original size:56 final size:56
Alignment explanation
Indices: 64776563--64776669 Score: 133
Period size: 56 Copynumber: 1.9 Consensus size: 56
64776553 ATTATATGTA
* * * * *
64776563 GCACTTAACGTGTGATGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAATG
1 GCACTTAACGTGTGAAGTAACGAGGATGGCACTTAGTGTACGAAACATCCAGAATG
** * *
64776619 GCACTTAGTGTGTGAAGTAACGAGGATGGCACTTAGTTTATGAAACATCCA
1 GCACTTAACGTGTGAAGTAACGAGGATGGCACTTAGTGTACGAAACATCCA
64776670 AAACGACAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
56 42 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (56 bp):
GCACTTAACGTGTGAAGTAACGAGGATGGCACTTAGTGTACGAAACATCCAGAATG
Found at i:64776683 original size:56 final size:56
Alignment explanation
Indices: 64776572--64776686 Score: 131
Period size: 56 Copynumber: 2.1 Consensus size: 56
64776562 AGCACTTAAC
* * * * * * * * *
64776572 GTGTGATGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAATGGCACTTAGT
1 GTGTGAAGTAACGAGGATGGCACTTAGTGTACGAAACATCCAAAACGACAATTAGT
* *
64776628 GTGTGAAGTAACGAGGATGGCACTTAGTTTATGAAACATCCAAAACGACAATTAGT
1 GTGTGAAGTAACGAGGATGGCACTTAGTGTACGAAACATCCAAAACGACAATTAGT
64776684 GTG
1 GTG
64776687 CAAGGCATCG
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (56 bp):
GTGTGAAGTAACGAGGATGGCACTTAGTGTACGAAACATCCAAAACGACAATTAGT
Found at i:64776831 original size:32 final size:33
Alignment explanation
Indices: 64776795--64776861 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 33
64776785 GTATCTATGG
* *
64776795 AAATTGGTATAATATGGTACATGTATGTAC-GA
1 AAATTGGTACAATATGGTACAGGTATGTACAGA
64776827 AAATTGGTACAATATGGTACAGGTATGTACAGA
1 AAATTGGTACAATATGGTACAGGTATGTACAGA
64776860 AA
1 AA
64776862 TTCAATTGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 28 0.88
33 4 0.12
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (33 bp):
AAATTGGTACAATATGGTACAGGTATGTACAGA
Found at i:64776863 original size:32 final size:31
Alignment explanation
Indices: 64776765--64776863 Score: 108
Period size: 32 Copynumber: 3.1 Consensus size: 31
64776755 TGAGTATGAG
* * * * *
64776765 ATTGGTACGAGATGATACAGGTATCTATGGAA
1 ATTGGTACAATATGGTACAGGTATGTA-CGAA
* *
64776797 ATTGGTATAATATGGTACATGTATGTACGAAA
1 ATTGGTACAATATGGTACAGGTATGTACG-AA
64776829 ATTGGTACAATATGGTACAGGTATGTACAGAA
1 ATTGGTACAATATGGTACAGGTATGTAC-GAA
64776861 ATT
1 ATT
64776864 CAATTGAGTA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
31 1 0.02
32 54 0.96
33 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.31
Consensus pattern (31 bp):
ATTGGTACAATATGGTACAGGTATGTACGAA
Found at i:64782883 original size:28 final size:28
Alignment explanation
Indices: 64782841--64782942 Score: 107
Period size: 28 Copynumber: 3.6 Consensus size: 28
64782831 TAATTATATG
** *
64782841 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* * **
64782869 TGGCACTTAGTGTGCGATA-CATCCAAAA
1 TGGCACTTAGTGTGCGA-AGTATCGAGGA
*
64782897 TGGCACTTAGTGTGCGAAGTAACGAGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
*
64782925 TGGCACTTAGTTTGCGAA
1 TGGCACTTAGTGTGCGAA
64782943 ACATCCAGAA
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
27 1 0.02
28 57 0.97
29 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAGTATCGAGGA
Found at i:64782927 original size:56 final size:56
Alignment explanation
Indices: 64782841--64782967 Score: 173
Period size: 56 Copynumber: 2.3 Consensus size: 56
64782831 TAATTATATG
** * * *
64782841 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAAAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAAAA
* *
64782897 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTTTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAAAA
* *
64782953 CGACACTTAGTGTGC
1 TGGCACTTAGTGTGC
64782968 AAGGCATCGG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAAAA
Found at i:64782984 original size:56 final size:55
Alignment explanation
Indices: 64782852--64783001 Score: 153
Period size: 56 Copynumber: 2.7 Consensus size: 55
64782842 GGCACTTAAC
* * * *
64782852 GTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAAAATGGCACTTAGT
1 GTGCGAAGCATC-GGGATGGCACTTAGTGTGCGAAACATCCAAAACGACACTTAGT
* * * *
64782908 GTGCGAAGTAACGAGGATGGCACTTAGTTTGCGAAACATCCAGAACGACACTTAGT
1 GTGCGAAGCATCG-GGATGGCACTTAGTGTGCGAAACATCCAAAACGACACTTAGT
*
64782964 GTGC-AAGGCATCGGGTATGGCA-TCTAGTGT-CGATACAT
1 GTGCGAA-GCATCGGG-ATGGCACT-TAGTGTGCGAAACAT
64783002 TGAATATTCA
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
55 13 0.16
56 67 0.84
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (55 bp):
GTGCGAAGCATCGGGATGGCACTTAGTGTGCGAAACATCCAAAACGACACTTAGT
Found at i:64783114 original size:32 final size:32
Alignment explanation
Indices: 64783044--64783141 Score: 128
Period size: 32 Copynumber: 3.1 Consensus size: 32
64783034 TGAGTATGAG
* * *
64783044 ATTGGTACCAGATGATACAGGTAT-CTACG-AA
1 ATTGGTACAATATGGTACAGGTATGC-ACGAAA
64783075 ATTGGTACAATATGGTACAGGTATGCACGAAA
1 ATTGGTACAATATGGTACAGGTATGCACGAAA
* *
64783107 ATTGGTACAATATGGTACAGGTATGTATGAAA
1 ATTGGTACAATATGGTACAGGTATGCACGAAA
64783139 ATT
1 ATT
64783142 CAATTGAGTA
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
31 24 0.40
32 36 0.60
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (32 bp):
ATTGGTACAATATGGTACAGGTATGCACGAAA
Found at i:64789502 original size:30 final size:31
Alignment explanation
Indices: 64789468--64789530 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
64789458 CCTTTTCATA
64789468 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
64789498 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
64789529 TT
1 TT
64789531 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:64789774 original size:24 final size:24
Alignment explanation
Indices: 64789723--64789865 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
64789713 GCTTTATCAT
*
64789723 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
64789748 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
64789772 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
64789795 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
64789819 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
64789843 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64789866 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64789802 original size:47 final size:48
Alignment explanation
Indices: 64789723--64789864 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
64789713 GCTTTATCAT
* *
64789723 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
64789772 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
64789819 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
64789865 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:64789823 original size:71 final size:72
Alignment explanation
Indices: 64789722--64789865 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
64789712 TGCTTTATCA
*
64789722 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
64789787 GCCCTTT
66 GCCCTTT
* * **
64789794 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
64789857 AGCCCTTT
65 AGCCCTTT
64789865 T
1 T
64789866 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:64789946 original size:11 final size:11
Alignment explanation
Indices: 64789916--64789969 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
64789906 TATGATTACC
64789916 TCATGTGCATA
1 TCATGTGCATA
*
64789927 TCA--TACATA
1 TCATGTGCATA
64789936 TCATGTGCATA
1 TCATGTGCATA
*
64789947 TCA--TACAT-
1 TCATGTGCATA
64789955 TCATGTGCATA
1 TCATGTGCATA
64789966 TCAT
1 TCAT
64789970 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:64789960 original size:19 final size:20
Alignment explanation
Indices: 64789916--64789974 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
64789906 TATGATTACC
64789916 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
64789936 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
64789955 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
64789975 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:64790049 original size:25 final size:25
Alignment explanation
Indices: 64790017--64790064 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64790007 ATACATAAAC
* * *
64790017 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
64790042 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64790065 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:64797598 original size:30 final size:31
Alignment explanation
Indices: 64797564--64797626 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
64797554 CCTTTTCATA
64797564 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
64797594 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
64797625 TT
1 TT
64797627 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:64797869 original size:24 final size:24
Alignment explanation
Indices: 64797818--64797960 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
64797808 GCTTTATCAT
*
64797818 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
64797843 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
64797867 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
64797890 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
64797914 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
64797938 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64797961 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64797897 original size:47 final size:48
Alignment explanation
Indices: 64797818--64797959 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
64797808 GCTTTATCAT
* *
64797818 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
64797867 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
64797914 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
64797960 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:64797918 original size:71 final size:72
Alignment explanation
Indices: 64797817--64797960 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
64797807 TGCTTTATCA
*
64797817 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
64797882 GCCCTTT
66 GCCCTTT
* * **
64797889 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
64797952 AGCCCTTT
65 AGCCCTTT
64797960 T
1 T
64797961 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:64798041 original size:11 final size:11
Alignment explanation
Indices: 64798011--64798064 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
64798001 TATGATTACC
64798011 TCATGTGCATA
1 TCATGTGCATA
*
64798022 TCA--TACATA
1 TCATGTGCATA
64798031 TCATGTGCATA
1 TCATGTGCATA
*
64798042 TCA--TACAT-
1 TCATGTGCATA
64798050 TCATGTGCATA
1 TCATGTGCATA
64798061 TCAT
1 TCAT
64798065 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:64798055 original size:19 final size:20
Alignment explanation
Indices: 64798011--64798069 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
64798001 TATGATTACC
64798011 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
64798031 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
64798050 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
64798070 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:64798144 original size:25 final size:25
Alignment explanation
Indices: 64798112--64798159 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64798102 ATACATAAAC
* * *
64798112 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
64798137 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64798160 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:64810446 original size:30 final size:30
Alignment explanation
Indices: 64810412--64810472 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64810402 TCCTTAACTC
64810412 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * * *
64810442 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
64810472 A
1 A
64810473 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:64812565 original size:3 final size:3
Alignment explanation
Indices: 64812557--64812590 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
64812547 ATATTAAGTT
* *
64812557 ATA ATA ATA ATA ATA ATA ATA GTT ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
64812591 AATCAAAAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:64815063 original size:66 final size:68
Alignment explanation
Indices: 64814987--64815173 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
64814977 TAGTACCACT
*
64814987 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
64815049 CACG
65 CACG
64815053 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
64815118 ATCACG
63 ATCACG
64815124 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
64815174 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:64815098 original size:71 final size:71
Alignment explanation
Indices: 64815010--64815173 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64815000 CGATTTGTCT
64815010 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64815075 CTTTCA
66 CTTTCA
64815081 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64815146 CTTTCA
66 CTTTCA
64815152 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64815174 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64815211 original size:71 final size:70
Alignment explanation
Indices: 64815010--64815207 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
64815000 CGATTTGTCT
* * *
64815010 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64815075 CTTTCA
65 CTTTCA
* * *
64815081 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64815146 CTTTCA
65 CTTTCA
* *
64815152 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
64815208 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64822630 original size:66 final size:68
Alignment explanation
Indices: 64822554--64822740 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
64822544 TAGTACCACT
*
64822554 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
64822616 CACG
65 CACG
64822620 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
64822685 ATCACG
63 ATCACG
64822691 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
64822741 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:64822665 original size:71 final size:71
Alignment explanation
Indices: 64822577--64822740 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64822567 CGATTTGTCT
64822577 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64822642 CTTTCA
66 CTTTCA
64822648 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64822713 CTTTCA
66 CTTTCA
64822719 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64822741 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64822778 original size:71 final size:70
Alignment explanation
Indices: 64822577--64822774 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
64822567 CGATTTGTCT
* * *
64822577 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64822642 CTTTCA
65 CTTTCA
* * *
64822648 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64822713 CTTTCA
65 CTTTCA
* *
64822719 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
64822775 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64824123 original size:27 final size:27
Alignment explanation
Indices: 64824093--64824145 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
64824083 GTGATTGATA
64824093 ATGAAATGACAAAGATG-AGAAATGAAT
1 ATGAAATGACAAA-ATGTAGAAATGAAT
* * *
64824120 ATGAGATGAGAAAATGTTGAAATGAA
1 ATGAAATGACAAAATGTAGAAATGAA
64824146 AAAGATGAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.53, C:0.02, G:0.25, T:0.21
Consensus pattern (27 bp):
ATGAAATGACAAAATGTAGAAATGAAT
Found at i:64824155 original size:43 final size:43
Alignment explanation
Indices: 64824094--64824175 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
64824084 TGATTGATAA
* *
64824094 TGAAATGACAAAGATGAGAAATGAATATGAGATGAGAAAATGT
1 TGAAATGAAAAAGATGAGAAATGAATATGAAATGAGAAAATGT
*
64824137 TGAAATGAAAAAGATGAGAAATGATTATGAAATGAGAAA
1 TGAAATGAAAAAGATGAGAAATGAATATGAAATGAGAAA
64824176 TGAAATACGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.54, C:0.01, G:0.24, T:0.21
Consensus pattern (43 bp):
TGAAATGAAAAAGATGAGAAATGAATATGAAATGAGAAAATGT
Found at i:64826129 original size:20 final size:20
Alignment explanation
Indices: 64826106--64826143 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
64826096 AAATGGTAAT
*
64826106 CCATTTCATTTACTTATTTA
1 CCATTTCATTTACCTATTTA
64826126 CCATTTCATTTACCTATT
1 CCATTTCATTTACCTATT
64826144 CTCAATCGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53
Consensus pattern (20 bp):
CCATTTCATTTACCTATTTA
Found at i:64831208 original size:17 final size:17
Alignment explanation
Indices: 64831186--64831220 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
64831176 ATGAAATGTG
64831186 TAGATTTCATCAATCGA
1 TAGATTTCATCAATCGA
64831203 TAGATTTCATCAATCGA
1 TAGATTTCATCAATCGA
64831220 T
1 T
64831221 CAACAACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (17 bp):
TAGATTTCATCAATCGA
Found at i:64841029 original size:50 final size:48
Alignment explanation
Indices: 64840913--64841087 Score: 183
Period size: 50 Copynumber: 3.5 Consensus size: 48
64840903 TGGTACGCAT
* * * * *
64840913 AGTAGCTTGCACTTAGTACTACACATGTCACCAATTATCCGGTACACGT-
1 AGTAGCCTGCACTTAGTACTACACACGTGACCAACTATCC-G-ACACATG
*
64840962 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGACACATG
1 AGTAGCCTGCACTTAGTACTACACACGTGACC-AACTATCCGACACATG
* * *
64841011 CAGTAGCCTGCACTTAGTACTACACACGTGATCGACGTTATCGGGTACACAT-
1 -AGTAGCCTGCACTTAGTACTACACACGTGACCAAC--TATC-CG-ACACATG
64841063 AGTAGCCTGCACTTAGTACTACACA
1 AGTAGCCTGCACTTAGTACTACACA
64841088 TGCGACCTAG
Statistics
Matches: 110, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
48 5 0.05
49 32 0.29
50 37 0.34
51 29 0.26
52 1 0.01
53 6 0.05
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (48 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCAACTATCCGACACATG
Found at i:64841082 original size:101 final size:99
Alignment explanation
Indices: 64840913--64841096 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
64840903 TGGTACGCAT
* * *
64840913 AGTAGCTTGCACTTAGTACTACACATGTCACCAATTATCCGGTACACGTAGTAGCCTGCACTTAG
1 AGTAGCCTGCACTTAGTACTACACACGTCACCAATTATCCGGTACACATAGTAGCCTGCACTTAG
*
64840978 TACTACACACGTGACCTAACTATCTGACACATGC
66 TACTACACACGCGACCTAACTATCTGACACATGC
* * * *
64841012 AGTAGCCTGCACTTAGTACTACACACGTGATCGACGTTATCGGGTACACATAGTAGCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGTCA-CCA-ATTATCCGGTACACATAGTAGCCTGCACTT
*
64841077 AGTACTACACATGCGACCTA
64 AGTACTACACACGCGACCTA
64841097 GCTACATATA
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 27 0.36
100 2 0.03
101 45 0.61
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
AGTAGCCTGCACTTAGTACTACACACGTCACCAATTATCCGGTACACATAGTAGCCTGCACTTAG
TACTACACACGCGACCTAACTATCTGACACATGC
Found at i:64841938 original size:30 final size:30
Alignment explanation
Indices: 64841902--64841962 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
64841892 TCCTTAACTC
64841902 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
64841932 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
64841962 A
1 A
64841963 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:64852199 original size:29 final size:29
Alignment explanation
Indices: 64852159--64852340 Score: 136
Period size: 29 Copynumber: 6.3 Consensus size: 29
64852149 CAGATAATGG
*
64852159 AAAGGGATAGCTTCGGCTATTGAATATGA
1 AAAGGGATAGCTTCGGCTATCGAATATGA
* * *
64852188 AAAGAGATAGCTTCGGCTATCGATTGTGA
1 AAAGGGATAGCTTCGGCTATCGAATATGA
* * *
64852217 AAAGGGATAG-TGACGACCATC-AACTATGA
1 AAAGGGATAGCT-TCGGCTATCGAA-TATGA
* * * * *
64852246 AAAAGGAT-GGTGACGACCATCGAATATGA
1 AAAGGGATAGCT-TCGGCTATCGAATATGA
* * *
64852275 AAAAGGATAGCTTTGGCTATCAAATATGA
1 AAAGGGATAGCTTCGGCTATCGAATATGA
* * * * *
64852304 AAAGGGATGGTTTCGACCATCAAATATGA
1 AAAGGGATAGCTTCGGCTATCGAATATGA
64852333 AAAGGGAT
1 AAAGGGAT
64852341 GGTTTCGACC
Statistics
Matches: 125, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
28 3 0.02
29 118 0.94
30 4 0.03
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (29 bp):
AAAGGGATAGCTTCGGCTATCGAATATGA
Found at i:64852364 original size:87 final size:87
Alignment explanation
Indices: 64852180--64852343 Score: 231
Period size: 87 Copynumber: 1.9 Consensus size: 87
64852170 TTCGGCTATT
* * * *
64852180 GAATATG-AAAAGAGATAGCTTCGGCTATCGATTGTGAAAAGGGATAGTGACGACCATCAACTAT
1 GAATATGAAAAAG-GATAGCTTCGGCTATCAAATATGAAAAGGGATAGTGACGACCATCAAATAT
64852244 GAAAAAGGATGGTGACGACCATC
65 GAAAAAGGATGGTGACGACCATC
* * **
64852267 GAATATGAAAAAGGATAGCTTTGGCTATCAAATATGAAAAGGGATGGTTTCGACCATCAAATATG
1 GAATATGAAAAAGGATAGCTTCGGCTATCAAATATGAAAAGGGATAGTGACGACCATCAAATATG
*
64852332 AAAAGGGATGGT
66 AAAAAGGATGGT
64852344 TTCGACCGTC
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
87 62 0.93
88 5 0.07
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.23
Consensus pattern (87 bp):
GAATATGAAAAAGGATAGCTTCGGCTATCAAATATGAAAAGGGATAGTGACGACCATCAAATATG
AAAAAGGATGGTGACGACCATC
Found at i:64852373 original size:29 final size:29
Alignment explanation
Indices: 64852214--64852350 Score: 150
Period size: 29 Copynumber: 4.7 Consensus size: 29
64852204 CTATCGATTG
* ** *
64852214 TGAAAAGGGATAGTGACGACCATCAACTA
1 TGAAAAGGGATGGTTTCGACCATCAAATA
* ** *
64852243 TGAAAAAGGATGGTGACGACCATCGAATA
1 TGAAAAGGGATGGTTTCGACCATCAAATA
* * * *
64852272 TGAAAAAGGATAGCTTT-GGCTATCAAATA
1 TGAAAAGGGAT-GGTTTCGACCATCAAATA
64852301 TGAAAAGGGATGGTTTCGACCATCAAATA
1 TGAAAAGGGATGGTTTCGACCATCAAATA
64852330 TGAAAAGGGATGGTTTCGACC
1 TGAAAAGGGATGGTTTCGACC
64852351 GTCGTTAAAG
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
28 4 0.04
29 86 0.93
30 2 0.02
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.22
Consensus pattern (29 bp):
TGAAAAGGGATGGTTTCGACCATCAAATA
Found at i:64856178 original size:44 final size:44
Alignment explanation
Indices: 64856128--64856278 Score: 139
Period size: 44 Copynumber: 3.5 Consensus size: 44
64856118 TCGGAGATAT
* *
64856128 CGTGTAAGACCGTGTCTGGGACATAGGCCTCGATTTTAGATTTA
1 CGTGTAAGACCATGTCTGGGACATAGGCATCGATTTTAGATTTA
* *
64856172 CGTGTAAGACCATGTCTGGAACATCGGCATCG-TATTT-GATTT-
1 CGTGTAAGACCATGTCTGGGACATAGGCATCGAT-TTTAGATTTA
* * * * * ** *
64856214 TGTGTAAGACCCTGTCAGGTACAGAGGCATCGATACTA-AATTA
1 CGTGTAAGACCATGTCTGGGACATAGGCATCGATTTTAGATTTA
* *
64856257 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
64856279 GTCGGCGTTG
Statistics
Matches: 84, Mismatches: 19, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 30 0.36
43 23 0.27
44 31 0.37
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACATAGGCATCGATTTTAGATTTA
Found at i:64859004 original size:30 final size:29
Alignment explanation
Indices: 64858910--64859011 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
64858900 TATAGTGAAT
* * *
64858910 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
64858939 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
64858967 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
64858997 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
64859012 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:64864185 original size:40 final size:40
Alignment explanation
Indices: 64864126--64864256 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
64864116 CGGGACTTTA
* * *
64864126 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
64864166 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
64864206 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
64864246 CCCGGATATAA
1 CCCGGATATAA
64864257 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:64869466 original size:30 final size:29
Alignment explanation
Indices: 64869372--64869473 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
64869362 TATAGTGAAT
* * *
64869372 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
64869401 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
64869429 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
64869459 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
64869474 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:64876229 original size:42 final size:42
Alignment explanation
Indices: 64876116--64876241 Score: 137
Period size: 44 Copynumber: 3.0 Consensus size: 42
64876106 CATCGATCGG
* * * *
64876116 AGATATCGTGTGAGACCGTGTCTGGGACATAGGCCTCGATTT
1 AGATTTCGTGTAAGACCATGTCTGGGACATAGGCATCGATTT
*
64876158 GAGATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATTT
1 -AGATTT-CGTGTAAGACCATGTCTGGGACATAGGCATCG-ATTT
* * * *
64876203 -GATTTCGTGTAAGACCCTGTCGGGGACAGAGGTATCGAT
1 AGATTTCGTGTAAGACCATGTCTGGGACATAGGCATCGAT
64876242 ACTGAATTAC
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 2 0.03
42 27 0.38
43 10 0.14
44 28 0.39
45 4 0.06
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCATGTCTGGGACATAGGCATCGATTT
Found at i:64884545 original size:40 final size:39
Alignment explanation
Indices: 64884500--64884707 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
64884490 CGGAATACAA
*
64884500 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64884540 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64884580 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
64884620 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
64884660 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
64884700 CCGGATAT
1 CCGGATAT
64884708 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:64884640 original size:80 final size:81
Alignment explanation
Indices: 64884500--64884705 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
64884490 CGGAATACAA
* * *
64884500 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
64884564 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
64884580 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
64884643 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
64884660 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
64884706 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:64886584 original size:44 final size:44
Alignment explanation
Indices: 64886534--64886683 Score: 141
Period size: 42 Copynumber: 3.5 Consensus size: 44
64886524 TCGAAGATAT
* *
64886534 CGTGTAAGACCGTGTCTGGAACATAGGCCTCGATTTGAGATTTA
1 CGTGTAAGACCATGTCTGGAACATAGGCATCGATTTGAGATTTA
*
64886578 CGTGTAAGACCATGTCTAGG-ACATCGGCATCGTATTT--GATTT-
1 CGTGTAAGACCATGTCT-GGAACATAGGCATCG-ATTTGAGATTTA
* * * * *
64886620 CGTGTAAGACCCTGTCAGGGACAGAGGCATCGATACTGA-A-TTA
1 CGTGTAAGACCATGTCTGGAACATAGGCATCGAT-TTGAGATTTA
* *
64886663 CATGTAAGACCACGTCTGGAA
1 CGTGTAAGACCATGTCTGGAA
64886684 TGTCGACATT
Statistics
Matches: 86, Mismatches: 13, Indels: 15
0.75 0.11 0.13
Matches are distributed among these distances:
41 4 0.05
42 28 0.33
43 22 0.26
44 26 0.30
45 6 0.07
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGAACATAGGCATCGATTTGAGATTTA
Found at i:64895839 original size:37 final size:37
Alignment explanation
Indices: 64895789--64895879 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
64895779 TTATTACGAA
*
64895789 GTCTTACCTGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
64895826 GTCTTACCCGGACATAATCTCCACACGTAGTCATTGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
64895863 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
64895880 TTTCCAAGTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 45 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:64895974 original size:48 final size:48
Alignment explanation
Indices: 64895919--64896118 Score: 337
Period size: 48 Copynumber: 4.2 Consensus size: 48
64895909 TGTTACAACA
*
64895919 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
64895967 TTCACATTAGCCATTCAGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
64896015 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* * *
64896063 TTCACATTAGCCATTCGGCTTTACCACATATATATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
64896111 TTCACATT
1 TTCACATT
64896119 CATCACATCG
Statistics
Matches: 142, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 142 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:64896164 original size:49 final size:49
Alignment explanation
Indices: 64896110--64896443 Score: 559
Period size: 49 Copynumber: 6.9 Consensus size: 49
64896100 CACACATATG
*
64896110 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
64896159 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
64896206 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
64896255 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
64896304 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
64896351 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
64896400 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
64896444 CATCTCCTAC
Statistics
Matches: 266, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 88 0.33
49 178 0.67
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:64896285 original size:145 final size:145
Alignment explanation
Indices: 64896110--64896443 Score: 659
Period size: 145 Copynumber: 2.3 Consensus size: 145
64896100 CACACATATG
*
64896110 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
64896175 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
64896240 CACATGTATATACAC
131 CACATGTATATACAC
64896255 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
64896320 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
64896385 CACATGTATATACAC
131 CACATGTATATACAC
64896400 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
64896444 CATCTCCTAC
Statistics
Matches: 188, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 188 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (145 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
CACATGTATATACAC
Found at i:64896444 original size:96 final size:95
Alignment explanation
Indices: 64896110--64896445 Score: 548
Period size: 96 Copynumber: 3.5 Consensus size: 95
64896100 CACACATATG
*
64896110 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
* *
64896175 TCGGCCATTAGGCCTTATCACA-TATATACTC
64 TTGGCCATTAGGCCTTATCACATTATATACAC
*
64896206 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATACACTTTCACATTCATCACA
64896271 TTGGCCATTAGGCCTTATCACATATATATACAC
64 TTGGCCATTAGGCCTTATCACAT-TATATACAC
* *
64896304 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
64896369 GGCCATTAGGCCTTATCACATGTATATACAC
66 GGCCATTAGGCCTTATCACAT-TATATACAC
*
64896400 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
64896446 TCTCCTACAT
Statistics
Matches: 225, Mismatches: 11, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 1 0.00
96 180 0.80
98 44 0.20
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (95 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
GGCCATTAGGCCTTATCACATTATATACAC
Found at i:64897225 original size:10 final size:10
Alignment explanation
Indices: 64897210--64897235 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
64897200 AAATCAACTC
64897210 ATTATGTCCT
1 ATTATGTCCT
64897220 ATTATGTCCT
1 ATTATGTCCT
64897230 ATTATG
1 ATTATG
64897236 ATTGAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.15, G:0.12, T:0.50
Consensus pattern (10 bp):
ATTATGTCCT
Found at i:64900143 original size:6 final size:6
Alignment explanation
Indices: 64900116--64900154 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
64900106 CCCCAAAAAC
* *
64900116 AGATAT AGTATAC AGATTT AGATAT AGATAT AGATAT AG
1 AGATAT AG-ATAT AGATAT AGATAT AGATAT AGATAT AG
64900155 CATGCTTATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 23 0.82
7 5 0.18
ACGTcount: A:0.46, C:0.03, G:0.18, T:0.33
Consensus pattern (6 bp):
AGATAT
Found at i:64901666 original size:15 final size:15
Alignment explanation
Indices: 64901646--64901674 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64901636 TTATATATTA
64901646 AGTTATAATAATAAT
1 AGTTATAATAATAAT
64901661 AGTTATAATAATAA
1 AGTTATAATAATAA
64901675 AAACAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (15 bp):
AGTTATAATAATAAT
Found at i:64907657 original size:46 final size:46
Alignment explanation
Indices: 64907604--64907779 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
64907594 TATTTGGGCA
64907604 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
64907650 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
64907697 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
64907743 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64907780 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:64907759 original size:93 final size:93
Alignment explanation
Indices: 64907600--64907771 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64907590 GGGATATTTG
* *
64907600 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
64907665 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
64907693 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
64907758 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
64907772 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:64910749 original size:15 final size:15
Alignment explanation
Indices: 64910729--64910797 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
64910719 GTATCTTGGG
64910729 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
64910744 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
64910759 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
64910774 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
64910789 TTTCTTTAT
1 TTTCTTTAT
64910798 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:64910798 original size:30 final size:30
Alignment explanation
Indices: 64910720--64910807 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
64910710 CATAGTATCG
* * * *
64910720 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
64910750 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
64910780 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
64910808 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:64913243 original size:46 final size:46
Alignment explanation
Indices: 64913190--64913365 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
64913180 TATTTGGGCA
64913190 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
64913236 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
64913283 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
64913329 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64913366 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:64913345 original size:93 final size:93
Alignment explanation
Indices: 64913186--64913357 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64913176 GGGATATTTG
* *
64913186 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
64913251 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
64913279 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
64913344 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
64913358 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:64918922 original size:31 final size:31
Alignment explanation
Indices: 64918884--64918947 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
64918874 CCTTTTCATA
64918884 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
64918915 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
64918946 TT
1 TT
64918948 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:64919190 original size:24 final size:24
Alignment explanation
Indices: 64919139--64919280 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
64919129 GCTTTATCAT
*
64919139 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
64919164 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
64919188 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
64919211 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
64919235 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
64919259 ATAACTGGGGCATAAG-CCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64919281 CACTTCCTCC
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 29 0.26
24 69 0.63
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64919218 original size:47 final size:48
Alignment explanation
Indices: 64919139--64919282 Score: 202
Period size: 47 Copynumber: 3.0 Consensus size: 48
64919129 GCTTTATCAT
* *
64919139 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
64919188 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
* *
64919235 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCTTTTCA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
64919283 CTTCCTCCAT
Statistics
Matches: 86, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
47 44 0.51
48 30 0.35
49 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:64919239 original size:71 final size:71
Alignment explanation
Indices: 64919138--64919280 Score: 209
Period size: 71 Copynumber: 2.0 Consensus size: 71
64919128 TGCTTTATCA
*
64919138 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
64919203 GCCCTTT
66 G-CCTTT
* * **
64919210 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
64919273 AGCCTTT
65 AGCCTTT
64919280 T
1 T
64919281 CACTTCCTCC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 6 0.09
71 46 0.71
72 13 0.20
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCTTT
Found at i:64919355 original size:20 final size:20
Alignment explanation
Indices: 64919330--64919389 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
64919320 TATGATTACC
64919330 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
64919350 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
64919370 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
64919390 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:64919464 original size:25 final size:25
Alignment explanation
Indices: 64919432--64919479 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64919422 ATACATAAAC
* * *
64919432 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
64919457 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64919480 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:64923982 original size:31 final size:31
Alignment explanation
Indices: 64923944--64924007 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
64923934 CCTTTTCATA
64923944 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
64923975 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
64924006 TT
1 TT
64924008 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:64924250 original size:24 final size:24
Alignment explanation
Indices: 64924199--64924341 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
64924189 GCTTTATCAT
*
64924199 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
64924224 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
64924248 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
64924271 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
64924295 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
64924319 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64924342 CACTTCCTCC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64924278 original size:47 final size:48
Alignment explanation
Indices: 64924199--64924340 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
64924189 GCTTTATCAT
* *
64924199 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
64924248 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
64924295 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
64924341 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:64924299 original size:71 final size:72
Alignment explanation
Indices: 64924198--64924341 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
64924188 TGCTTTATCA
*
64924198 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
64924263 GCCCTTT
66 GCCCTTT
* * **
64924270 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
64924333 AGCCCTTT
65 AGCCCTTT
64924341 T
1 T
64924342 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:64924435 original size:19 final size:20
Alignment explanation
Indices: 64924391--64924449 Score: 102
Period size: 19 Copynumber: 3.0 Consensus size: 20
64924381 TATGATTACC
64924391 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
64924411 TCATGTGCATAGCATACAT-
1 TCATGTGCATATCATACATA
64924430 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
64924450 CCATATTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:64924524 original size:25 final size:25
Alignment explanation
Indices: 64924492--64924539 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64924482 ATACATAAAC
* * *
64924492 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
64924517 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64924540 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:64931043 original size:47 final size:47
Alignment explanation
Indices: 64930990--64931422 Score: 344
Period size: 47 Copynumber: 9.1 Consensus size: 47
64930980 TTAGGATTTT
* * *
64930990 ATGTGATGAATGTGAATATGCATATATGAGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
64931037 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
64931084 ATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
64931131 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCTAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** * * * * *
64931178 ATGTGAAAAATGTATGAGA-AAG-GTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
64931226 ATGTGA-AATATGTATGAGATATGC--ATATGTGGTAAAGCTGAATGGTCA
1 ATGTGATGA-ATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
64931274 ATGTGAAATATATATATGAGATATGC--ATATGTGATAAGGCCGAATGGCCA
1 ATGTG--AT-GA-ATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
* *
64931324 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * * *
64931371 AAGTGGTGAATATGAGATATGC--ATATGTGGTAAAGCTGAATGGTCA
1 ATGTGATGAATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
64931417 ATGTGA
1 ATGTGA
64931423 AATATATATA
Statistics
Matches: 324, Mismatches: 49, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
45 4 0.01
46 28 0.09
47 172 0.53
48 72 0.22
49 7 0.02
50 37 0.11
52 4 0.01
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:64931212 original size:48 final size:48
Alignment explanation
Indices: 64931154--64931480 Score: 317
Period size: 48 Copynumber: 6.8 Consensus size: 48
64931144 GAACATGCAT
* * * *
64931154 ATATGTGGTAAAGCCTAATGGCTAATGTGAAAAATGTATGAGAAAGGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
*
64931202 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* *
64931250 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGATATGC
* * * ** *
64931300 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATG--TGAG-CATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* * * ***
64931345 ATATGTGTGATAAGGCCGAATGGCCAAAGTGGTGAA--TATGAGATATGC
1 ATATGTG-G-TAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* * *
64931393 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGATATGC
* *
64931443 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTA
64931481 GGCGATGTGC
Statistics
Matches: 232, Mismatches: 32, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
45 11 0.05
46 20 0.09
47 31 0.13
48 90 0.39
49 1 0.00
50 78 0.34
51 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
Found at i:64931437 original size:193 final size:193
Alignment explanation
Indices: 64931101--64931477 Score: 492
Period size: 193 Copynumber: 1.9 Consensus size: 193
64931091 GAATGTGAGC
* *
64931101 ATGCATATGTATGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
1 ATGCATATG-ATGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAA
* * * *
64931166 GCCTAATGGCTAATGTGAAAAATGTATGAGAAAGGTATATGTGGTAAAGCCGAATGGCTAATGTG
65 GCCGAATGGCCAAAGTGAAAAA-GTATGAGAAAGGCATATGTGGTAAAGCCGAATGGCTAATGTG
* *
64931231 AAATATGTATGAGATATGCATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGA
129 AAATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGA
64931295 T
193 T
* * * *
64931296 ATGCATATG-TGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGG
1 ATGCATATGATGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAG
*** * * *
64931360 CCGAATGGCCAAAGTGGTGAA-TATGAGATATGCATATGTGGTAAAGCTGAATGG-TCAATGTGA
66 CCGAATGGCCAAAGTGAAAAAGTATGAGAAAGGCATATGTGGTAAAGCCGAATGGCT-AATGTG-
* *
64931423 AATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
129 AA-ATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
64931478 GTAGGCGATG
Statistics
Matches: 158, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
190 1 0.01
191 35 0.22
192 2 0.01
193 110 0.70
194 1 0.01
195 9 0.06
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.28
Consensus pattern (193 bp):
ATGCATATGATGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAG
CCGAATGGCCAAAGTGAAAAAGTATGAGAAAGGCATATGTGGTAAAGCCGAATGGCTAATGTGAA
ATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGAT
Found at i:64931472 original size:143 final size:143
Alignment explanation
Indices: 64931025--64931472 Score: 484
Period size: 143 Copynumber: 3.1 Consensus size: 143
64931015 ATGAGATAAG
* *
64931025 GCCGAATGGCCT-ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTG
1 GCCGAATGG-CTAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTG
* * * * * * * * *
64931089 ATGAATGTGAG-CATGCATATGTATGATAAGGCCGAATGGCCAATGTG--GT-GA-ATATGA-AC
65 ATGAATATGAGATATGCATATG--TGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGAT
64931148 ATGCATATATGTGGTAAA
128 ATG--TATATGTGGTAAA
* ** * * * * *
64931166 GCCTAATGGCTAATGTGAAAAATGTATGAGAAAGGTATATGTG-G-TAAAGCCGAATGGCTAATG
1 GCCGAATGGCTAATGTGATGAATG--TGAG-CATGCATATGTGTGATAAGGCCGAATGGCCAATG
*
64931229 TGAAAT-ATGTATGAGATATGCATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGA
63 TG--ATGA-ATATGAGATATGCATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGA
* * *
64931293 GATATGCATATGTGATAAG
125 GATATGTATATGTGGTAAA
* * *
64931312 GCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAAAGTGG
1 GCCGAATGGCTAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGA
64931377 TGAATATGAGATATGCATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATG
66 TGAATATGAGATATGCATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATG
64931442 TATATGTGGTAAA
131 TATATGTGGTAAA
*
64931455 GCCGAATGGCTAGTGTGA
1 GCCGAATGGCTAATGTGA
64931473 AATATGTAGG
Statistics
Matches: 251, Mismatches: 40, Indels: 30
0.78 0.12 0.09
Matches are distributed among these distances:
140 2 0.01
141 18 0.07
142 19 0.08
143 122 0.49
144 21 0.08
145 28 0.11
146 31 0.12
147 6 0.02
148 4 0.02
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (143 bp):
GCCGAATGGCTAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGA
TGAATATGAGATATGCATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATG
TATATGTGGTAAA
Found at i:64931519 original size:240 final size:238
Alignment explanation
Indices: 64931060--64931521 Score: 662
Period size: 240 Copynumber: 1.9 Consensus size: 238
64931050 GAACATGCAT
64931060 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAA
* *
64931125 TGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCTAATGGCTAATGTGAAAAATG
66 TGGCCAAAGTGGTGAATATGAACATGCA-ATATGTGGTAAAGCCTAATGGCTAATGTGAAAAATA
* *
64931190 TATGAGAAAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
130 TATGAGAAAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGCATATA
* * **
64931255 TGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGC
195 TGGT-AAGCCGAACGACCAATGTGAAATATATATATGAGATATGC
*
64931300 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAA
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAA
*
64931365 TGGCCAAAGTGGTGAATATGAGATATGC-ATATGTGGTAAAG-CTGAATGG-TCAATGTGAAATA
66 TGGCCAAAGTGGTGAATATGA-ACATGCAATATGTGGTAAAGCCT-AATGGCT-AATGTGAAA-A
* * * * * *
64931427 TATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCG
127 -ATATATGAGAAAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGCA
* *
64931492 TATATTGT-GGCCGAACGACCAAATGTGAAA
191 TATATGGTAAGCCGAACGACC-AATGTGAAA
64931522 GGTGTGTATT
Statistics
Matches: 198, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
238 3 0.02
239 34 0.17
240 94 0.47
241 67 0.34
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (238 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAA
TGGCCAAAGTGGTGAATATGAACATGCAATATGTGGTAAAGCCTAATGGCTAATGTGAAAAATAT
ATGAGAAAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGCATATAT
GGTAAGCCGAACGACCAATGTGAAATATATATATGAGATATGC
Found at i:64931772 original size:37 final size:37
Alignment explanation
Indices: 64931629--64931771 Score: 214
Period size: 37 Copynumber: 3.9 Consensus size: 37
64931619 AAATATATTT
64931629 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * *
64931666 CGGGTAAGACCTGATGGCTACGTGTGGAGAGTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
64931703 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* * *
64931740 CGGGTAAGACCCGATAACTTCGTGTGGTGATT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATT
64931772 TCGTCTGAGC
Statistics
Matches: 95, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.27
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:64933311 original size:40 final size:40
Alignment explanation
Indices: 64933028--64933299 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
64933018 GAGAATTGAG
*
64933028 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
64933068 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
64933108 AGTGATGTATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
64933148 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
64933188 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
64933228 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
64933268 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
64933300 ATCATGCTGG
Statistics
Matches: 213, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:64937922 original size:40 final size:39
Alignment explanation
Indices: 64937856--64938006 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
64937846 AAATTGAATG
* * *
64937856 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
64937895 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
64937935 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
64937975 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
64938007 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:64938020 original size:40 final size:39
Alignment explanation
Indices: 64937893--64938022 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
64937883 ATGCTGGAAA
* *
64937893 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
64937933 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
64937973 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
64938013 TTATATCCGG
1 TTATATCCGG
64938023 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:64940630 original size:47 final size:47
Alignment explanation
Indices: 64940576--64941008 Score: 371
Period size: 47 Copynumber: 9.1 Consensus size: 47
64940566 TTAGGATTTT
* *
64940576 ATGTGATGAATGTGAATATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
64940623 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
64940670 ATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
64940717 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCTAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** * * * * *
64940764 ATGTGAAAAATGTATGAGA-AAG-GTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
64940812 ATGTGA-AATATGTATGAGATATGC--ATATGTGGTAAAGCTGAATGGTCA
1 ATGTGATGA-ATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
64940860 ATGTGAAATATATATATGAGATATGC--ATATGTGATAAGGCCGAATGGCCA
1 ATGTG--AT-GA-ATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
* *
64940910 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
64940957 ATGTGGTGAATATGAGATATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
64941003 ATGTGA
1 ATGTGA
64941009 AATATATATA
Statistics
Matches: 328, Mismatches: 45, Indels: 27
0.82 0.11 0.07
Matches are distributed among these distances:
45 4 0.01
46 30 0.09
47 174 0.53
48 72 0.22
49 7 0.02
50 37 0.11
52 4 0.01
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:64940676 original size:22 final size:22
Alignment explanation
Indices: 64940605--64940676 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
64940595 GCATATATGA
64940605 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
64940627 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
64940652 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
64940674 GAT
1 GAT
64940677 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:64940798 original size:48 final size:48
Alignment explanation
Indices: 64940740--64941066 Score: 335
Period size: 48 Copynumber: 6.8 Consensus size: 48
64940730 GAACATGCAT
* * * *
64940740 ATATGTGGTAAAGCCTAATGGCTAATGTGAAAAATGTATGAGAAAGGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
*
64940788 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* *
64940836 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGATATGC
* * * ** *
64940886 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATG--TGAG-CATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* * ***
64940931 ATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAA--TATGAGATATGC
1 ATATGTG-G-TAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* *
64940979 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGATATGC
* *
64941029 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTA
64941067 GGCGATGTGC
Statistics
Matches: 236, Mismatches: 28, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
45 11 0.05
46 22 0.09
47 32 0.14
48 90 0.38
49 1 0.00
50 79 0.33
51 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
Found at i:64940965 original size:25 final size:25
Alignment explanation
Indices: 64940890--64940965 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
64940880 ATATGCATAT
64940890 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
64940915 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
64940937 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
64940962 GTGA
1 GTGA
64940966 ATATGAGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:64941035 original size:193 final size:193
Alignment explanation
Indices: 64940687--64941063 Score: 510
Period size: 193 Copynumber: 1.9 Consensus size: 193
64940677 GAATGTGAGC
* *
64940687 ATGCATATGTATGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAA
1 ATGCATATG-ATGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAA
* * *
64940752 GCCTAATGGCTAATGTGAAAAATGTATGAGAAAGGTATATGTGGTAAAGCCGAATGGCTAATGTG
65 GCCGAATGGCCAATGTGAAAAA-GTATGAGAAAGGCATATGTGGTAAAGCCGAATGGCTAATGTG
* *
64940817 AAATATGTATGAGATATGCATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGA
129 AAATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGA
64940881 T
193 T
* * * *
64940882 ATGCATATG-TGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGG
1 ATGCATATGATGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAG
*** * *
64940946 CCGAATGGCCAATGTGGTGAA-TATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGA
66 CCGAATGGCCAATGTGAAAAAGTATGAGAAAGGCATATGTGGTAAAGCCGAATGGCT-AATGTG-
* *
64941009 AATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
129 AA-ATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
64941064 GTAGGCGATG
Statistics
Matches: 160, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
190 1 0.01
191 36 0.22
192 2 0.01
193 111 0.69
194 1 0.01
195 9 0.06
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.28
Consensus pattern (193 bp):
ATGCATATGATGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAG
CCGAATGGCCAATGTGAAAAAGTATGAGAAAGGCATATGTGGTAAAGCCGAATGGCTAATGTGAA
ATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGAT
Done.