Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 215 of 433
Found at i:66858766 original size:18 final size:17
Alignment explanation
Indices: 66858745--66858785 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
66858735 AAATTGATTG
*
66858745 AAAAACTAAAAAAATAGA
1 AAAAAC-AAAAAAAAAGA
66858763 AAAAGACAAAAAAAAAGA
1 AAAA-ACAAAAAAAAAGA
66858781 AAAAA
1 AAAAA
66858786 ATATTATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 18 0.86
19 2 0.10
ACGTcount: A:0.83, C:0.05, G:0.07, T:0.05
Consensus pattern (17 bp):
AAAAACAAAAAAAAAGA
Found at i:66859808 original size:96 final size:96
Alignment explanation
Indices: 66859644--66859818 Score: 278
Period size: 96 Copynumber: 1.8 Consensus size: 96
66859634 CTAATGACTG
* * * * *
66859644 TGAGCTATCACCTTTTGTGCAATGTTATTGGTGTAGTTCAAAAGATCATAAGGGTCTCTAATGTC
1 TGAGCTATCACCTTTTGTGCAATATTACTAGTGTAGTTCAAAAGATCACAAGGGTCTCCAATGTC
66859709 CAATTAAATATCCAAATAGAGAGAATACGAT
66 CAATTAAATATCCAAATAGAGAGAATACGAT
* * *
66859740 TGAGCTATCACCTTTTGTGCATTATTACTAGTGTAGTTCAAAAGATCACAAGTGTTTCCAATGTC
1 TGAGCTATCACCTTTTGTGCAATATTACTAGTGTAGTTCAAAAGATCACAAGGGTCTCCAATGTC
66859805 CAATTAAATATCCA
66 CAATTAAATATCCA
66859819 GCGAGAAAAG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 71 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (96 bp):
TGAGCTATCACCTTTTGTGCAATATTACTAGTGTAGTTCAAAAGATCACAAGGGTCTCCAATGTC
CAATTAAATATCCAAATAGAGAGAATACGAT
Found at i:66875024 original size:40 final size:40
Alignment explanation
Indices: 66874969--66875136 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
66874959 TGAATGATAC
* * *
66874969 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * **
66875009 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTCTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * ** *
66875049 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
66875089 CTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
66875129 CC-GGCTAA
1 CCGGGCTAA
66875137 ATTCTGAAGA
Statistics
Matches: 103, Mismatches: 25, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
39 5 0.05
40 98 0.95
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:66875127 original size:80 final size:80
Alignment explanation
Indices: 66874969--66875136 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 80
66874959 TGAATGATAC
* * ** *
66874969 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
*
66875034 TGCGAGTTCTTATAT
66 TGCGAGTGCTTATAT
* * * *
66875049 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCTGGGTTAAGACCCGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
** *
66875113 GTGCTTGTGGTTATAT
65 GTGCGAGTGCTTATAT
66875129 CC-GGCTAA
1 CCGGGCTAA
66875137 ATTCTGAAGA
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
79 6 0.08
80 65 0.88
81 3 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGCTTATAT
Found at i:66877071 original size:16 final size:16
Alignment explanation
Indices: 66877050--66877088 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
66877040 GCAGATCCCA
66877050 AAAAGCTGAAATACCG
1 AAAAGCTGAAATACCG
*
66877066 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATACCG
66877082 AAAAGCT
1 AAAAGCT
66877089 AAAAGTTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.49, C:0.18, G:0.21, T:0.13
Consensus pattern (16 bp):
AAAAGCTGAAATACCG
Found at i:66877404 original size:28 final size:28
Alignment explanation
Indices: 66877304--66877419 Score: 112
Period size: 28 Copynumber: 4.1 Consensus size: 28
66877294 TGAGCATAGC
* * *
66877304 TATAAATGTGATTGGGCCTAAT-AGCCG
1 TATAAATGAGATTGGGCCTAATGGGCCA
* *
66877331 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATAAATGAGA-TTGGGCCTAATGGGCCA
* *
66877360 CATAAATGTGATTGGGCCTAATGGGCCA
1 TATAAATGAGATTGGGCCTAATGGGCCA
*
66877388 TATGAAA-GAG-TTAGGGCCTAATGGGCTA
1 TAT-AAATGAGATT-GGGCCTAATGGGCCA
66877416 TATA
1 TATA
66877420 CAGGTATGTG
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
27 13 0.17
28 49 0.64
29 15 0.19
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.28
Consensus pattern (28 bp):
TATAAATGAGATTGGGCCTAATGGGCCA
Found at i:66877405 original size:56 final size:56
Alignment explanation
Indices: 66877305--66877413 Score: 157
Period size: 56 Copynumber: 1.9 Consensus size: 56
66877295 GAGCATAGCT
* * * *
66877305 ATAAATGTGATTGGGCCTAATAGCCGTATGAATGTGATTTGGGCCTAATGGGCCAC
1 ATAAATGTGATTGGGCCTAATAGCCATATGAAAGAGATTAGGGCCTAATGGGCCAC
*
66877361 ATAAATGTGATTGGGCCTAATGGGCCATATGAAAGAG-TTAGGGCCTAATGGGC
1 ATAAATGTGATTGGGCCTAAT-AGCCATATGAAAGAGATTAGGGCCTAATGGGC
66877414 TATATACAGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 36 0.77
57 11 0.23
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (56 bp):
ATAAATGTGATTGGGCCTAATAGCCATATGAAAGAGATTAGGGCCTAATGGGCCAC
Found at i:66880223 original size:32 final size:32
Alignment explanation
Indices: 66880184--66880248 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
66880174 GTCATTATCA
66880184 ATCCATGATAGAAAAGACAAGGAAGACTTACC
1 ATCCATGATAGAAAAGACAAGGAAGACTTACC
66880216 ATCCATGATAGAAAAGACAAGGAAGACTTACC
1 ATCCATGATAGAAAAGACAAGGAAGACTTACC
66880248 A
1 A
66880249 AACCCGCGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.48, C:0.18, G:0.18, T:0.15
Consensus pattern (32 bp):
ATCCATGATAGAAAAGACAAGGAAGACTTACC
Found at i:66884778 original size:40 final size:40
Alignment explanation
Indices: 66884741--66884966 Score: 174
Period size: 40 Copynumber: 5.7 Consensus size: 40
66884731 GCTACTCGTT
*
66884741 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
66884781 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* ***
66884821 CAAATGCCTTC-GGATCTTAGTTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAACTCGCA
* ** **
66884861 CGAATGCCTTC-GGATTTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAACTCGCA
** * ** * * *
66884901 CGTATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
66884942 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
66884967 CATCATTCGA
Statistics
Matches: 164, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 150 0.91
41 11 0.07
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:66884853 original size:80 final size:80
Alignment explanation
Indices: 66884741--66884966 Score: 271
Period size: 80 Copynumber: 2.8 Consensus size: 80
66884731 GCTACTCGTT
* * * *
66884741 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTAACTCGCACAGATGCCTTCGGGACTTAGCCCG
66884805 GATTTAGTAACTCGCA
65 GATTTAGTAACTCGCA
* * * *
66884821 CAAATGCCTTCGGATCTTAGTTCGGATTTAGTAACTCGCAC-GAATGCCTTC-GGATTTTAGTCC
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTCGCACAG-ATGCCTTCGGGA-CTTAGCCC
66884884 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
** * * *
66884901 CGTATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACA-AAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTAAC-TCGCACAGATGCCTTCGGGACTTAGCCCG
66884965 GA
65 GA
66884967 CATCATTCGA
Statistics
Matches: 123, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
79 7 0.06
80 108 0.88
81 8 0.07
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTCGCACAGATGCCTTCGGGACTTAGCCCGG
ATTTAGTAACTCGCA
Found at i:66892804 original size:39 final size:39
Alignment explanation
Indices: 66892761--66892981 Score: 279
Period size: 39 Copynumber: 5.6 Consensus size: 39
66892751 TACTCGTTCA
*
66892761 AATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCAC
1 AATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCAC
*
66892800 AATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCAC
1 AATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCAC
*
66892839 AAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCAC
1 -AATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCAC
*
66892879 AATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCAC
1 AATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCAC
* * * *
66892918 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCAC
1 AATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCAC
*
66892958 AAAGCCTTCGGGA-CTTAGCCCGGA
1 AATGCCTTC-GGATCTTAGCCCGGA
66892982 CATCATTCGA
Statistics
Matches: 168, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
39 107 0.64
40 58 0.35
41 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
AATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCAC
Found at i:66892870 original size:79 final size:79
Alignment explanation
Indices: 66892759--66892981 Score: 310
Period size: 79 Copynumber: 2.8 Consensus size: 79
66892749 GCTACTCGTT
* * *
66892759 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAATGCCTTCGGGACTTAGCCCG
66892822 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
*
66892838 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAATGCCTTCGGGA-CTTAGCCCGG
66892902 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* * * *
66892917 C-AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGG
66892981 A
65 A
66892982 CATCATTCGA
Statistics
Matches: 130, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
78 37 0.28
79 88 0.68
80 5 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:66892941 original size:118 final size:118
Alignment explanation
Indices: 66892761--66892981 Score: 290
Period size: 118 Copynumber: 1.9 Consensus size: 118
66892751 TACTCGTTCA
*
66892761 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATA
* *
66892826 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCAC
66 TAGTAACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCAC
* * **
66892879 AATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCGG
*
66892941 ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
66892982 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
117 6 0.07
118 71 0.79
119 13 0.14
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (118 bp):
AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATA
TAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:66896236 original size:46 final size:46
Alignment explanation
Indices: 66896169--66896342 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
66896159 TGTAACCCGC
*
66896169 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
66896215 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
66896265 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
66896308 CCATAAGTG-ACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
66896343 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 28 0.26
46 35 0.32
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:66899701 original size:40 final size:40
Alignment explanation
Indices: 66899652--66899859 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
66899642 TCTTCGGAAT
* * *
66899652 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
66899691 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
66899731 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
66899771 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
66899811 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
66899851 TTAGCCCGG
1 TTAGCCCGG
66899860 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:66907738 original size:40 final size:40
Alignment explanation
Indices: 66907689--66907896 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
66907679 TCTTCGGAAT
* * *
66907689 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
66907728 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
66907768 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
66907808 TTAGCCCAGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
66907848 TTAGCTCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
66907888 TTAGCCCGG
1 TTAGCCCGG
66907897 GTATCATTCA
Statistics
Matches: 142, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 138 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:66910892 original size:29 final size:28
Alignment explanation
Indices: 66910858--66910960 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
66910848 TACTCAATCA
*
66910858 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
66910887 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
66910916 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
66910945 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
66910961 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:66912721 original size:170 final size:169
Alignment explanation
Indices: 66912435--66912774 Score: 572
Period size: 170 Copynumber: 2.0 Consensus size: 169
66912425 GTTTTCTACT
* * * *
66912435 AGGTCCTTTCTAGTGAAATTCACATTTATAACTCTAAATTAAAGCATCAAAATGTCACACATGAG
1 AGGTCCTTTCTAGTGAAATTCACATTTATAACCCTAAATCAAAGCATCAAAATGTCACACACGAA
*
66912500 TTAACACATATTATAGGCATCAAAATAAATATCAAATTATTTTTATGCCTCGGTTTTGTGGTCCC
66 TTAACACATATCATAGGCATCAAAATAAATATCAAATTATTTTTATGCCTCGGTTTTGTGGTCCC
*
66912565 GAAACCATATTCCGACTAGGGTCGTTTTAAGGCTGTCAC
131 GAAACCACATTCCGACTAGGGTCGTTTTAAGGCTGTCAC
* *
66912604 AGGTCCTTTTTAGTGAAATTCACATTTATAACCCTAAATCAAATCATCAAAAATGTCACACACGA
1 AGGTCCTTTCTAGTGAAATTCACATTTATAACCCTAAATCAAAGCATC-AAAATGTCACACACGA
* * *
66912669 ATTAACACATATCATAGGCATCAAAATGAATATTAAATTATTTTTGTGCCTCGGTTTTGTGGTCC
65 ATTAACACATATCATAGGCATCAAAATAAATATCAAATTATTTTTATGCCTCGGTTTTGTGGTCC
66912734 CGAAACCACATTCCGACTAGGGTCGTTTTAAGGCTGTCAC
130 CGAAACCACATTCCGACTAGGGTCGTTTTAAGGCTGTCAC
66912774 A
1 A
66912775 ATCTCCACAT
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
169 44 0.28
170 115 0.72
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (169 bp):
AGGTCCTTTCTAGTGAAATTCACATTTATAACCCTAAATCAAAGCATCAAAATGTCACACACGAA
TTAACACATATCATAGGCATCAAAATAAATATCAAATTATTTTTATGCCTCGGTTTTGTGGTCCC
GAAACCACATTCCGACTAGGGTCGTTTTAAGGCTGTCAC
Found at i:66913383 original size:51 final size:50
Alignment explanation
Indices: 66913320--66913502 Score: 208
Period size: 51 Copynumber: 3.6 Consensus size: 50
66913310 CAAATACCTC
* *
66913320 GTGGCCTACACATAGTACCACCCTTGTAGTCAAAGCTACATTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCAAAGCTACATTCTTCACAAA
* * *
66913371 GTGGCCTTCACATAGTACCACGCTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTG-TCAAAGCTA-CATTCTTCACAAA
* * ** *
66913423 GTGGTCTTCACATAGTACCACACTTGTGACCTAGCT--ATCTCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTACAT-TCTTCACAAA
* *
66913472 GTGGCCTTCACATGGTACCACACTTGAGTCA
1 GTGGCCTTCACATAGTACCACACTTGTGTCA
66913503 TTAGTGACAT
Statistics
Matches: 113, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
48 1 0.01
49 35 0.31
50 1 0.01
51 38 0.34
52 38 0.34
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTACATTCTTCACAAA
Found at i:66913490 original size:49 final size:51
Alignment explanation
Indices: 66913320--66913497 Score: 229
Period size: 52 Copynumber: 3.5 Consensus size: 51
66913310 CAAATACCTC
* * *
66913320 GTGGCCTACACATAGTACCACCCTTGT-AGTCAAAGCTA-CATTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATC-TTCTTCACAAA
*
66913371 GTGGCCTTCACATAGTACCACGCTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAA
* * *
66913423 GTGGTCTTCACATAGTACCACACTTGTGACC-TAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
*
66913472 GTGGCCTTCACATGGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
66913498 AGTCATTAGT
Statistics
Matches: 115, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
49 33 0.29
51 40 0.35
52 42 0.37
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
Found at i:66916895 original size:27 final size:27
Alignment explanation
Indices: 66916865--66917023 Score: 223
Period size: 27 Copynumber: 5.9 Consensus size: 27
66916855 GGCAAAATGG
* * *
66916865 TAATTTTACCATACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
66916892 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
66916918 GTAATTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
66916946 TAATTCTACCCTACAAGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
66916972 GTAATTCTACCCTACAGGGGTATTTCGA
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
66917000 TAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAAGGGTATTT
66917024 AATAATTTTG
Statistics
Matches: 120, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.01
27 118 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:66916910 original size:54 final size:54
Alignment explanation
Indices: 66916864--66917023 Score: 266
Period size: 54 Copynumber: 3.0 Consensus size: 54
66916854 GGGCAAAATG
* * *
66916864 GTAATTTTACCATACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
* *
66916918 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
*
66916972 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
66917024 AATAATTTTG
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCA
Found at i:66917004 original size:81 final size:81
Alignment explanation
Indices: 66916863--66917023 Score: 254
Period size: 81 Copynumber: 2.0 Consensus size: 81
66916853 GGGGCAAAAT
*
66916863 GGTAATTTTACCATACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCATACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
66916928 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* *
66916944 GGTAATTCTACCCTACAAGGGTATTTC-AGTAATTCTACCCTACAGGGGTATTTC-GATAATTCT
1 GGTAATTCTACCATACAAGGGTATCTCGA-TAATTCTACCCTACAGGGGTATTTCAG-TAATTCT
*
66917007 ACCCTACAGGGGTATTT
64 ACCCTACAAGGGTATTT
66917024 AATAATTTTG
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
80 2 0.03
81 72 0.97
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (81 bp):
GGTAATTCTACCATACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
CCTACAAGGGTATTTC
Found at i:66917137 original size:27 final size:27
Alignment explanation
Indices: 66917098--66917383 Score: 258
Period size: 27 Copynumber: 10.7 Consensus size: 27
66917088 ACAAGTCGAA
** * *
66917098 GGTATTTCAGTAATTTTGCAAACTAAG
1 GGTATTTTGGTAATTTTACAAACTAGG
* * *
66917125 GGTTTTTTGGTAATTTCATAAA-TCAGG
1 GGTATTTTGGTAATTTTACAAACT-AGG
** * *
66917152 GGTATTTTGGTAATTTTGTAAACCA-A
1 GGTATTTTGGTAATTTTACAAACTAGG
* *
66917178 GGTATTTTGGTAATTTTAC-AAGTCGAG
1 GGTATTTTGGTAATTTTACAAACTAG-G
** *
66917205 GGTATTTCAGTAATTTCACAAA-TCAGG
1 GGTATTTTGGTAATTTTACAAACT-AGG
* * *
66917232 GGTATTTTGGTAATTTTAC-AAGTCGA
1 GGTATTTTGGTAATTTTACAAACTAGG
** * *
66917258 GGTATTTCAGTAATTTCACAAATTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
66917285 GGTATTTTGGTAATTTCACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
* *
66917312 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
66917339 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
66917366 GGTATTTTAGTAATTTTA
1 GGTATTTTGGTAATTTTA
66917384 GGAATTGAGG
Statistics
Matches: 210, Mismatches: 41, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
25 2 0.01
26 37 0.18
27 168 0.80
28 3 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:66917167 original size:54 final size:54
Alignment explanation
Indices: 66917069--66917383 Score: 309
Period size: 54 Copynumber: 5.9 Consensus size: 54
66917059 TATAAATTGG
* * * *
66917069 GGGTACTTTGGTAATTTTTACAAGTC-GAAGGTATTTCAGTAATTTTGCAAACTAA
1 GGGTATTTTGGTAA-TTTTACAAATCAG-GGGTATTTCAGTAATTTTACAAACTAA
* * * ** ** *
66917124 GGGTTTTTTGGTAATTTCATAAATCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAACTAA
* * *
66917178 -GGTATTTTGGTAATTTTACAAGTC-GAGGGTATTTCAGTAATTTCACAAA-TCAG
1 GGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTCAGTAATTTTACAAACT-AA
* * * * *
66917231 GGGTATTTTGGTAATTTTACAAGTC-GAGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAACTAA
* ** *
66917284 GGGTATTTTGGTAATTTCACAAA-CTAGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATC-AGGGGTATTTCAGTAATTTTACAAACTAA
* *
66917338 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTA
1 GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTA
66917384 GGAATTGAGG
Statistics
Matches: 219, Mismatches: 33, Indels: 17
0.81 0.12 0.06
Matches are distributed among these distances:
52 2 0.01
53 84 0.38
54 119 0.54
55 14 0.06
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAACTAA
Found at i:66917188 original size:26 final size:26
Alignment explanation
Indices: 66917070--66917194 Score: 99
Period size: 27 Copynumber: 4.7 Consensus size: 26
66917060 ATAAATTGGG
* *
66917070 GGTACTTTGGTAATTTT-TACAAGTCGAA
1 GGTATTTTGGTAATTTTGTA-AA--CCAA
** * *
66917098 GGTATTTCAGTAATTTTGCAAACTAA
1 GGTATTTTGGTAATTTTGTAAACCAA
* ** * *
66917124 GGGTTTTTTGGTAATTTCATAAATCAGG
1 -GGTATTTTGGTAATTTTGTAAACCA-A
66917152 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTGTAAACCAA
66917178 GGTATTTTGGTAATTTT
1 GGTATTTTGGTAATTTT
66917195 ACAAGTCGAG
Statistics
Matches: 75, Mismatches: 19, Indels: 8
0.74 0.19 0.08
Matches are distributed among these distances:
26 20 0.27
27 38 0.51
28 16 0.21
29 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTGTAAACCAA
Found at i:66917221 original size:80 final size:80
Alignment explanation
Indices: 66917068--66917381 Score: 328
Period size: 80 Copynumber: 3.9 Consensus size: 80
66917058 ATATAAATTG
* * * ** * * * * *
66917068 GGGGTACTTTGGTAATTTTTACAAGTCGAAGGTATTTCAGTAATTTTGCAAACTAAGGGTTTTTT
1 GGGGTATTTTGGTAA-TTTTACAA-ACCAAGGTATTTTGGTAATTTTACAATCCAGGGGTATTTT
* *
66917133 GGTAATTTCATAAATCA
64 AGTAATTTCACAAATCA
** * *
66917150 GGGGTATTTTGGTAATTTTGTAAACCAAGGTATTTTGGTAATTTTACAAGTCGA-GGGTATTTCA
1 GGGGTATTTTGGTAATTTTACAAACCAAGGTATTTTGGTAATTTTACAA-TCCAGGGGTATTTTA
66917214 GTAATTTCACAAATCA
65 GTAATTTCACAAATCA
** * ** * * *
66917230 GGGGTATTTTGGTAATTTTACAAGTCGAGGTATTTCAGTAATTTCACAAAT-TAGGGGTATTTTG
1 GGGGTATTTTGGTAATTTTACAAACCAAGGTATTTTGGTAATTTTAC-AATCCAGGGGTATTTTA
66917294 GTAATTTCACAAA-CTA
65 GTAATTTCACAAATC-A
*
66917310 GGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTA
1 GGGGTATTTTGGTAATTTTACAAACCAA-GGTATTTTGGTAATTTTACAATCCAGGGGTATTTTA
66917375 GTAATTT
65 GTAATTT
66917382 TAGGAATTGA
Statistics
Matches: 192, Mismatches: 34, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
79 2 0.01
80 132 0.69
81 44 0.23
82 14 0.07
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (80 bp):
GGGGTATTTTGGTAATTTTACAAACCAAGGTATTTTGGTAATTTTACAATCCAGGGGTATTTTAG
TAATTTCACAAATCA
Found at i:66919624 original size:25 final size:25
Alignment explanation
Indices: 66919596--66919690 Score: 172
Period size: 25 Copynumber: 3.8 Consensus size: 25
66919586 CTCTTTTAAT
*
66919596 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
66919621 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
66919646 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
66919671 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
66919691 AGCACTTCCT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 68 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:66919926 original size:28 final size:27
Alignment explanation
Indices: 66919895--66920057 Score: 227
Period size: 27 Copynumber: 6.0 Consensus size: 27
66919885 GAGGCAAAAT
* * *
66919895 GGTAATTTTACCCCACAAAGGGTATCTC
1 GGTAATTCTACCCTAC-AAGGGTATTTC
*
66919923 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
66919950 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
66919977 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
66920004 GATAATTCTGCCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
66920031 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
66920058 AATAATTTTG
Statistics
Matches: 124, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
27 110 0.89
28 14 0.11
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:66920160 original size:27 final size:27
Alignment explanation
Indices: 66920101--66920421 Score: 292
Period size: 27 Copynumber: 11.9 Consensus size: 27
66920091 CTGTAAATTG
* *
66920101 GGGGTACTTTGGTAATTTTTACAAGTC-
1 GGGGTATTTTGGTAA-TTTTACAAATCA
** *
66920128 GAGGGTATTTCAGTAATTTCACAAATCA
1 G-GGGTATTTTGGTAATTTTACAAATCA
66920156 GGGGTATTTTGGTAATTTTACAAA-CTA
1 GGGGTATTTTGGTAATTTTACAAATC-A
* * *
66920183 GAGGTATTTTGGTAATTTTATAAACCA
1 GGGGTATTTTGGTAATTTTACAAATCA
* *
66920210 -AGGTATTTTGGTAATTTTACAAGTC-
1 GGGGTATTTTGGTAATTTTACAAATCA
** * * *
66920235 GGGGTATTTCAGTAATTTCATAAATTA
1 GGGGTATTTTGGTAATTTTACAAATCA
* *
66920262 GGGATATTTTGGTAATTTTACAAGTCA
1 GGGGTATTTTGGTAATTTTACAAATCA
* * *** * *
66920289 AGAGTATTTCAATAATTTCACAAATTA
1 GGGGTATTTTGGTAATTTTACAAATCA
*
66920316 GGGGTATTTTGGTAATTTCACAAA-CTA
1 GGGGTATTTTGGTAATTTTACAAATC-A
*
66920343 GGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAATCA
* *
66920370 GGGGTATTTTGCTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAATCA
* * *
66920397 GGGGTATCTTAGTAATTTTAGAAAT
1 GGGGTATTTTGGTAATTTTACAAAT
66920422 TGAGGGCATT
Statistics
Matches: 237, Mismatches: 49, Indels: 16
0.78 0.16 0.05
Matches are distributed among these distances:
26 41 0.17
27 182 0.77
28 14 0.06
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTTACAAATCA
Found at i:66921617 original size:27 final size:26
Alignment explanation
Indices: 66921565--66921617 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
66921555 ATTCTTTTCT
* * *
66921565 AAAAGAAACTCAAGGGAAATTCTTAA
1 AAAAAAAACTCAAGAGAAATTATTAA
*
66921591 AAAAAAAACTCAAAGAGAATTTATTAA
1 AAAAAAAACTC-AAGAGAAATTATTAA
66921618 CTCAAAAGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.58, C:0.09, G:0.11, T:0.21
Consensus pattern (26 bp):
AAAAAAAACTCAAGAGAAATTATTAA
Found at i:66926965 original size:53 final size:54
Alignment explanation
Indices: 66926901--66927107 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
66926891 TTCCTTTTTA
* *
66926901 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
66926954 AACTCACCATTGCTATGCCTTGGCATGGTCTTACATGGGATCTTTTCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
66927008 TAGTTTATCAATGCCATGTCTTGACATTGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
66927063 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
66927108 AAACCTTAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 45 0.37
54 37 0.31
55 39 0.32
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:66927478 original size:30 final size:30
Alignment explanation
Indices: 66927444--66927501 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
66927434 CCTTAACTCT
66927444 AACTTTGGCAAAATTATGA-TTTTGCCCCTA
1 AACTTTGGCAAAATTAT-ACTTTTGCCCCTA
* * *
66927474 AACTTTTGCATATTTATACTTTTGCCCC
1 AACTTTGGCAAAATTATACTTTTGCCCC
66927502 AAGGCTCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.41
Consensus pattern (30 bp):
AACTTTGGCAAAATTATACTTTTGCCCCTA
Found at i:66935166 original size:45 final size:45
Alignment explanation
Indices: 66935101--66935278 Score: 248
Period size: 45 Copynumber: 4.0 Consensus size: 45
66935091 CGTCTAGTAA
**
66935101 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAATAC
* ** * *
66935146 TATTCGGGCCTTTGATCCTAGCAGGCTATGATGCCAGTGAGATGC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAATAC
*
66935191 TATTTGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAATAC
* * * *
66935236 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAAAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAAT
66935279 GATATCGGGC
Statistics
Matches: 115, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 115 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAATAC
Found at i:66935259 original size:90 final size:90
Alignment explanation
Indices: 66935101--66935264 Score: 283
Period size: 90 Copynumber: 1.8 Consensus size: 90
66935091 CGTCTAGTAA
** * *
66935101 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTGGTGAAATACTATTCGGGCCTTTGATCCTA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAATACTATTCGGGCCTTCGAGCCTA
66935166 GCAGGCTATGATGCCAGTGAGATGC
66 GCAGGCTATGATGCCAGTGAGATGC
*
66935191 TATTTGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAATACTATTCGGGCCTTCGAGCCTA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAATACTATTCGGGCCTTCGAGCCTA
66935256 GCAGGCTAT
66 GCAGGCTAT
66935265 AATACCGGTG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 69 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (90 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAATACTATTCGGGCCTTCGAGCCTA
GCAGGCTATGATGCCAGTGAGATGC
Found at i:66937374 original size:38 final size:40
Alignment explanation
Indices: 66937161--66937376 Score: 255
Period size: 40 Copynumber: 5.5 Consensus size: 40
66937151 TGGATGATAA
* **
66937161 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTACAT
*
66937202 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
66937242 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
66937282 CCGGGCTAAGTCCCGAAGGCA-TTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
66937321 CCGGGCTATGT-CCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
66937359 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66937377 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
37 7 0.04
38 31 0.19
39 25 0.16
40 68 0.43
41 24 0.15
42 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:66945330 original size:40 final size:40
Alignment explanation
Indices: 66945235--66945450 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
66945225 TGGATGATAA
*
66945235 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
66945276 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66945316 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT--TATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
66945354 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
66945394 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
66945433 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66945451 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
38 51 0.32
39 15 0.09
40 65 0.41
41 24 0.15
42 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:66945376 original size:78 final size:78
Alignment explanation
Indices: 66945235--66945450 Score: 260
Period size: 78 Copynumber: 2.7 Consensus size: 78
66945225 TGGATGATAA
*
66945235 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAG-TGACTAGTTCCGGGCTAAGTCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTTA-TA--TCCGGGCTAAGTCCCGAAGGCAT
* *
66945298 TTGTGCGAGTTATTACAT
61 TGGTGCGAGTTACTACAT
66945316 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTTATATCCGGGCTAAGTCCCGAAGGCATTGGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTTATATCCGGGCTAAGTCCCGAAGGCATTGGTG
*
66945381 CGAGTTACTATAT
66 CGAGTTACTACAT
* * * * *
66945394 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TTATATCCGGGCTAAGTCCCGAAGG
66945451 TACTTGGCTT
Statistics
Matches: 122, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
77 9 0.07
78 72 0.59
79 7 0.06
80 4 0.03
81 26 0.21
82 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTTATATCCGGGCTAAGTCCCGAAGGCATTGGTG
CGAGTTACTACAT
Found at i:66950477 original size:40 final size:40
Alignment explanation
Indices: 66950433--66950566 Score: 155
Period size: 40 Copynumber: 3.4 Consensus size: 40
66950423 ATGCTAGTGA
* * *
66950433 TTATATCCGGGCTAAGACCCAAAGGC-ATTCGTGCGAGTTG
1 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTTG
* *
66950473 TTATATCTGGGTTAAGACCCGAAGGCAATTGTGCAAGTTA
1 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTG
* * ** *
66950513 CTAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGG
1 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTG
66950553 TTATATCC-GGTTAA
1 TTATATCCGGGTTAA
66950567 ATTCCGAAGG
Statistics
Matches: 79, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 6 0.08
40 70 0.89
41 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (40 bp):
TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTG
Found at i:66958550 original size:40 final size:40
Alignment explanation
Indices: 66958495--66958658 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 40
66958485 TGAATGATAC
* * *
66958495 CCGGGCTAAGTCCCGAAGGTATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
*
66958535 CCGGGCTAAGACCCGAAGGCATTCGTGCTAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * * * *
66958575 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
66958615 CCGGGTTAAGACCCGAAGACAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
66958655 CCGG
1 CCGG
66958659 TTAAATCCCG
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:66966215 original size:29 final size:28
Alignment explanation
Indices: 66966168--66966222 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
66966158 GCGAGTTATA
***
66966168 CTGATTTGGCTTTGGGCCATGCATATCTG
1 CTGATTTGGCTTCAAGCCATG-ATATCTG
66966197 CTGATTTGGCTTCAAGCCATGATATC
1 CTGATTTGGCTTCAAGCCATGATATC
66966223 AGTACCTAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (28 bp):
CTGATTTGGCTTCAAGCCATGATATCTG
Found at i:66967432 original size:42 final size:41
Alignment explanation
Indices: 66967385--66967481 Score: 158
Period size: 42 Copynumber: 2.3 Consensus size: 41
66967375 CACGTCCTGG
*
66967385 CACACGGGCGTGTATGACCATTTTTAGGGCACACAGGCTAGC
1 CACACGGGCGTGTATGACCATTTTTAGGGCACACAAGCTA-C
66967427 CACACGGGCGTGTATGACCATTTTTAGGGCACACAAGCTAC
1 CACACGGGCGTGTATGACCATTTTTAGGGCACACAAGCTAC
*
66967468 CTACATGGGCGTGT
1 C-ACACGGGCGTGT
66967482 GTGTTTGTAA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
41 2 0.04
42 50 0.96
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.23
Consensus pattern (41 bp):
CACACGGGCGTGTATGACCATTTTTAGGGCACACAAGCTAC
Found at i:66968793 original size:43 final size:43
Alignment explanation
Indices: 66968746--66968902 Score: 228
Period size: 43 Copynumber: 3.7 Consensus size: 43
66968736 TGGGTTCTCG
* *
66968746 TGTAAGACCACGTCTGGGGCGTTGGCATCGATATGTGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
* *
66968789 TGTAAGACCACATCTGGGACGTTGGCATCGGTATGTGATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
*
66968832 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATATGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTACA
*
66968875 TGTAAGACCAGGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
66968903 TGTACAATAT
Statistics
Matches: 102, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
42 2 0.02
43 99 0.97
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
Found at i:66974630 original size:27 final size:27
Alignment explanation
Indices: 66974600--66974698 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 27
66974590 TTTAGTTTAC
*
66974600 TAAAATTACCAAAATACGCTTAG-TTTG
1 TAAAATTACCAAAATAC-CTTAGACTTG
** *
66974627 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCAAAATACCTTAGACTTG
** *
66974654 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCAAAATACCTTAGACTTG
* *
66974681 TAGAATTACCAAAGTACC
1 TAAAATTACCAAAATACC
66974699 CCCGATTTAT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.06
27 59 0.94
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCTTAGACTTG
Found at i:66974728 original size:27 final size:27
Alignment explanation
Indices: 66974702--66974906 Score: 232
Period size: 27 Copynumber: 7.6 Consensus size: 27
66974692 AAGTACCCCC
* *
66974702 GATTTATAGAATTACCATTTTAACCC-C
1 GATTTACAGAATTACCATTTT-ACCCTT
* *
66974729 GATTTACATAATTACCGTTTTAACCCTT
1 GATTTACAGAATTACCATTTT-ACCCTT
*
66974757 GATTTACAAAATTACCATTTTACCCTT
1 GATTTACAGAATTACCATTTTACCCTT
* *
66974784 GACTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCATTTTACCCTT
* *
66974811 GACTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTT
* **
66974838 GATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCATTTTACCCTT
*** *
66974865 GATTTACAGAATTATTGTTTTACCCTC
1 GATTTACAGAATTACCATTTTACCCTT
*
66974892 GATTTACAAAATTAC
1 GATTTACAGAATTAC
66974907 TAAAATACCC
Statistics
Matches: 156, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 137 0.88
28 19 0.12
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.40
Consensus pattern (27 bp):
GATTTACAGAATTACCATTTTACCCTT
Found at i:66974907 original size:54 final size:54
Alignment explanation
Indices: 66974702--66974906 Score: 277
Period size: 54 Copynumber: 3.8 Consensus size: 54
66974692 AAGTACCCCC
* *
66974702 GATTTATAGAATTACCATTTTAACCC-CGATTTACATAATTACCGTTTTAACCCTT
1 GATTTACAGAATTACCATTTT-ACCCTCGATTTACAGAATTACCGTTTT-ACCCTT
* * *
66974757 GATTTACAAAATTACCATTTTACCCTTGACTTACAGAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTT
* * *
66974811 GACTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTT
*** *
66974865 GATTTACAGAATTATTGTTTTACCCTCGATTTACAAAATTAC
1 GATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTAC
66974907 TAAAATACCC
Statistics
Matches: 132, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
54 94 0.71
55 38 0.29
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
GATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTT
Found at i:66974916 original size:81 final size:81
Alignment explanation
Indices: 66974751--66974935 Score: 199
Period size: 81 Copynumber: 2.3 Consensus size: 81
66974741 TACCGTTTTA
* *
66974751 ACCCTTGATTTACAAAATTACCATTTTACCCTTGACTTACAGAATTACCGTTTTACCCTTGACTT
1 ACCCTCGATTTACAAAATTACCATTTTACCCTTGACTTACAGAATTACCGTTTTACCCTCGACTT
* ***
66974816 ACAGAATTACCATTTT
66 ACAAAATTACCAAAAT
* * ** * ** *
66974832 ACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTATTGTTTTACCCTCGATTT
1 ACCCTCGATTTACAAAATTACCATTTTACCCTTGACTTACAGAATTACCGTTTTACCCTCGACTT
*
66974897 ACAAAATTACTAAAAT
66 ACAAAATTACCAAAAT
* * **
66974913 ACCCTGGGTTTGTAAAATTACCA
1 ACCCTCGATTTACAAAATTACCA
66974936 AAATACCCCT
Statistics
Matches: 83, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (81 bp):
ACCCTCGATTTACAAAATTACCATTTTACCCTTGACTTACAGAATTACCGTTTTACCCTCGACTT
ACAAAATTACCAAAAT
Found at i:66974943 original size:54 final size:54
Alignment explanation
Indices: 66974885--66975024 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
66974875 ATTATTGTTT
* ** * *
66974885 TACCCTCGATTTACAAAATTACTAAAATACCCTGGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTGAGTTTGTAAAATTACCAAAA
* * * *
66974939 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTGAGTTTGTAAAATTACCAAAA
*
66974993 TACCCTCAATTTGTAAAATTACCAAATTACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
66975025 CTAATTTACA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTGAGTTTGTAAAATTACCAAAA
Found at i:66975030 original size:27 final size:27
Alignment explanation
Indices: 66974899--66975031 Score: 153
Period size: 27 Copynumber: 4.9 Consensus size: 27
66974889 CTCGATTTAC
* **
66974899 AAAATTACTAAAATA-CCCTGGGTTTGT
1 AAAATTACCAAAATACCCCT-AATTTGT
*
66974926 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
* *
66974953 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
* *
66974980 GAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-AATTTGT
*
66975007 AAAATTACCAAATTACCCCTAATTT
1 AAAATTACCAAAATACCCCTAATTT
66975032 ACAAAGTTAC
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.03
27 82 0.88
28 8 0.09
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAATTTGT
Found at i:66975047 original size:54 final size:54
Alignment explanation
Indices: 66974927--66975052 Score: 141
Period size: 54 Copynumber: 2.3 Consensus size: 54
66974917 TGGGTTTGTA
* * * **
66974927 AAATTACCA-AAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTTAGTTTGTG
1 AAATTA-CAGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTGAC
* *
66974981 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAATTACCCCTAATTT-AC
1 AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTGAC
66975034 AAAGTTACAGAAATACCCT
1 AAA-TTACAGAAATACCCT
66975053 TGACTTTCTA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (54 bp):
AAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTGAC
Found at i:66975198 original size:27 final size:27
Alignment explanation
Indices: 66975168--66975259 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
66975158 ACCCCTATTA
*
66975168 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
66975195 GGTAAAGTGACCGTAAAGCCCTTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
66975222 GATAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
66975249 GGTAAAATGAC
1 GGTAAAATGAC
66975260 GAATATGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:66976436 original size:25 final size:25
Alignment explanation
Indices: 66976407--66976454 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
66976397 TTATAATATG
* *
66976407 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
66976432 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
66976455 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:66976505 original size:9 final size:9
Alignment explanation
Indices: 66976493--66976569 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
66976483 TTTGATAAAC
66976493 ATGATATGT
1 ATGATATGT
*
66976502 ATGATATGCAC
1 ATGATATG--T
66976513 ATGATATGT
1 ATGATATGT
*
66976522 ATGATATGCAC
1 ATGATATG--T
*
66976533 ATGACATGT
1 ATGATATGT
*
66976542 ATGATATGCAC
1 ATGATATG--T
66976553 ATGATATGT
1 ATGATATGT
66976562 ATGATATG
1 ATGATATG
66976570 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:66976518 original size:11 final size:11
Alignment explanation
Indices: 66976502--66976573 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
66976492 CATGATATGT
66976502 ATGATATGCAC
1 ATGATATGCAC
*
66976513 ATGATATG--T
1 ATGATATGCAC
66976522 ATGATATGCAC
1 ATGATATGCAC
* *
66976533 ATGACATG--T
1 ATGATATGCAC
66976542 ATGATATGCAC
1 ATGATATGCAC
*
66976553 ATGATATG--T
1 ATGATATGCAC
66976562 ATGATATGCAC
1 ATGATATGCAC
66976573 A
1 A
66976574 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:66976581 original size:20 final size:20
Alignment explanation
Indices: 66976491--66976573 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
66976481 ATTTTGATAA
66976491 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
66976511 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
66976531 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
66976551 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
66976571 ACA
1 ACA
66976574 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:66976655 original size:24 final size:24
Alignment explanation
Indices: 66976628--66976732 Score: 167
Period size: 24 Copynumber: 4.4 Consensus size: 24
66976618 GAGGAAGTGA
66976628 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
66976652 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
66976676 AAAAGGGCTTACGCCTCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
66976699 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
66976723 AAAAGGGCTT
1 AAAAGGGCTT
66976733 TTACCCTAGT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
23 20 0.27
24 54 0.73
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:66976717 original size:47 final size:48
Alignment explanation
Indices: 66976627--66976732 Score: 169
Period size: 47 Copynumber: 2.2 Consensus size: 48
66976617 GGAGGAAGTG
*
66976627 AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
* * *
66976675 CAAAAGGGCTTACGCCTCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
66976722 AAAAAGGGCTT
1 AAAAAGGGCTT
66976733 TTACCCTAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
47 32 0.60
48 21 0.40
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (48 bp):
AAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:66976743 original size:24 final size:24
Alignment explanation
Indices: 66976627--66976771 Score: 161
Period size: 24 Copynumber: 6.0 Consensus size: 24
66976617 GGAGGAAGTG
66976627 AAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
*
66976651 CAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
* * *
66976675 CAAAAGGGCTTACGCCTCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
*
66976699 -TAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
* * *
66976722 AAAAAGGGCTTTTACCCTAGTTACT
1 AAAAAGGGCTTATGCCCCAGTTA-T
*
66976747 -AAAAGAGG-TTAGGCCTCCAGTTAT
1 AAAAAG-GGCTTATGCC-CCAGTTAT
66976771 A
1 A
66976772 TGATAAAGCA
Statistics
Matches: 102, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
23 20 0.20
24 73 0.72
25 9 0.09
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAAGGGCTTATGCCCCAGTTAT
Found at i:66976744 original size:47 final size:47
Alignment explanation
Indices: 66976627--66976771 Score: 161
Period size: 47 Copynumber: 3.0 Consensus size: 47
66976617 GGAGGAAGTG
* * *
66976627 AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTTTACCCTAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
* *
66976675 CAAAAGGGC--TTACGCCTCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTTTAC-CCT-AGTTATAAAAGGGCTTATGCCCCAGTTAT
*
66976722 AAAAAGGGCTTTTACCCTAGTTACTAAAAGAGG-TTAGGCCTCCAGTTAT
1 AAAAAGGGCTTTTACCCTAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
66976771 A
1 A
66976772 TGATAAAGCA
Statistics
Matches: 82, Mismatches: 8, Indels: 13
0.80 0.08 0.13
Matches are distributed among these distances:
46 2 0.02
47 37 0.45
48 28 0.34
49 15 0.18
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAAGGGCTTTTACCCTAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:66976751 original size:71 final size:72
Alignment explanation
Indices: 66976629--66976770 Score: 200
Period size: 71 Copynumber: 2.0 Consensus size: 72
66976619 AGGAAGTGAA
* *
66976629 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTACGCCT-
1 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATACCCCAGTTATCAAAAGAGG-TTACGCCTC
66976692 CAGTTATT
65 CAGTTATT
* * *
66976700 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTACCCTAGTTA-CTAAAAGAGGTTAGGCCTC
1 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATACCCCAGTTATC-AAAAGAGGTTACGCCTC
66976764 CAGTTAT
65 CAGTTAT
66976771 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
70 1 0.02
71 53 0.84
72 9 0.14
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (72 bp):
AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATACCCCAGTTATCAAAAGAGGTTACGCCTCC
AGTTATT
Found at i:66977027 original size:31 final size:31
Alignment explanation
Indices: 66976964--66977027 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
66976954 CGTTTACCGT
**
66976964 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
**
66976995 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
66977026 AA
1 AA
66977028 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:66982171 original size:15 final size:15
Alignment explanation
Indices: 66982151--66982188 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
66982141 AATGAGCACC
66982151 AGAGGTACTCGTGGA
1 AGAGGTACTCGTGGA
66982166 AGAGGTACTCGTGGA
1 AGAGGTACTCGTGGA
*
66982181 AGGGGTAC
1 AGAGGTAC
66982189 AAGAGGCCGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.26, C:0.13, G:0.42, T:0.18
Consensus pattern (15 bp):
AGAGGTACTCGTGGA
Found at i:66985351 original size:13 final size:13
Alignment explanation
Indices: 66985333--66985358 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66985323 ATATTATAAT
66985333 TATTTTATGTTAA
1 TATTTTATGTTAA
66985346 TATTTTATGTTAA
1 TATTTTATGTTAA
66985359 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:66986786 original size:40 final size:40
Alignment explanation
Indices: 66986738--66986983 Score: 379
Period size: 40 Copynumber: 6.2 Consensus size: 40
66986728 GGACTAAGAT
66986738 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
66986778 CTGAAGGCATTTGTGCTAGTCACTATATCTGGACTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
66986818 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
66986858 CCGAAGGTATTTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
66986898 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
66986938 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
66986977 CCGAAGG
1 CCGAAGG
66986984 TACTTGGGTT
Statistics
Matches: 187, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 15 0.08
40 171 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:66993795 original size:15 final size:15
Alignment explanation
Indices: 66993763--66993791 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
66993753 ATTTTTTGTG
66993763 TTTATTATCTGTGAA
1 TTTATTATCTGTGAA
66993778 TTTA-TATCTGTGAA
1 TTTATTATCTGTGAA
66993792 ATTTTCGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.52
Consensus pattern (15 bp):
TTTATTATCTGTGAA
Found at i:66995668 original size:29 final size:29
Alignment explanation
Indices: 66995578--66995737 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
66995568 ACTCGATTTC
* * **
66995578 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
66995607 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
66995635 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
66995665 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
66995694 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
66995723 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
66995738 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:66998337 original size:43 final size:43
Alignment explanation
Indices: 66998290--66998444 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 43
66998280 TGTTCTCATG
* *
66998290 TAAGACCATGTATGGGATGTTGGCATTGATATATGATTATGTA
1 TAAGACCATGTCTGGGATGTTGGCATCGATATATGATTATGTA
* * * * * *
66998333 TAAGACTAGGTCTGGGACGTTGGCATCGATATGTGGTTATGTG
1 TAAGACCATGTCTGGGATGTTGGCATCGATATATGATTATGTA
* * * **
66998376 TAAGACCATGTCTGGGACAG-TGGCATCAATATGTGATTACATA
1 TAAGACCATGTCTGGGA-TGTTGGCATCGATATATGATTATGTA
** *
66998419 TAAGACCACATCTGGGATGTTAGCAT
1 TAAGACCATGTCTGGGATGTTGGCAT
66998445 TGTATGATAT
Statistics
Matches: 90, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
42 1 0.01
43 88 0.98
44 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (43 bp):
TAAGACCATGTCTGGGATGTTGGCATCGATATATGATTATGTA
Found at i:67003094 original size:75 final size:75
Alignment explanation
Indices: 67002971--67003122 Score: 295
Period size: 75 Copynumber: 2.0 Consensus size: 75
67002961 AATTATGATG
67002971 ATTTAAATGTTCAATATTAATTCGACATGGAAATGAGAAAGTATAATTATCTTTATTATGTTTTT
1 ATTTAAATGTTCAATATTAATTCGACATGGAAATGAGAAAGTATAATTATCTTTATTATGTTTTT
67003036 ATATTTCAGT
66 ATATTTCAGT
*
67003046 ATTTAAATGTTCAATATTAATTCGACATGGAAATGAGTAAGTATAATTATCTTTATTATGTTTTT
1 ATTTAAATGTTCAATATTAATTCGACATGGAAATGAGAAAGTATAATTATCTTTATTATGTTTTT
67003111 ATATTTCAGT
66 ATATTTCAGT
67003121 AT
1 AT
67003123 ATTTTATGTA
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.46
Consensus pattern (75 bp):
ATTTAAATGTTCAATATTAATTCGACATGGAAATGAGAAAGTATAATTATCTTTATTATGTTTTT
ATATTTCAGT
Found at i:67005410 original size:19 final size:20
Alignment explanation
Indices: 67005377--67005414 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
67005367 TTATAATATC
*
67005377 ATAAATAATATGAATAAAAA
1 ATAAATAATAGGAATAAAAA
67005397 ATAAA-AATAGGAATAAAA
1 ATAAATAATAGGAATAAAA
67005415 GAAGAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (20 bp):
ATAAATAATAGGAATAAAAA
Found at i:67014102 original size:24 final size:24
Alignment explanation
Indices: 67014049--67014112 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 24
67014039 GGTTATGCGA
67014049 CACTATGTGTGC-AAAAACTAAGTGG
1 CACTATGTGTGCGAAAAAC--AGTGG
67014074 CACTATGTGTGCGAGAAAAC-GTGG
1 CACTATGTGTGCGA-AAAACAGTGG
67014098 CACTATGTGTGCGAA
1 CACTATGTGTGCGAA
67014113 TAAGTAAGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
23 1 0.03
24 18 0.49
25 12 0.32
26 1 0.03
27 5 0.14
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.23
Consensus pattern (24 bp):
CACTATGTGTGCGAAAAACAGTGG
Found at i:67015603 original size:40 final size:40
Alignment explanation
Indices: 67015559--67015821 Score: 395
Period size: 40 Copynumber: 6.6 Consensus size: 40
67015549 TACTTGGTCG
* *
67015559 AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
67015599 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
* *
67015639 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
67015679 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
67015719 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * * *
67015759 AATGCCTTCGGGACTTAGCCCAGA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
67015799 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
67015822 TTATCATCCA
Statistics
Matches: 203, Mismatches: 17, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
39 2 0.01
40 200 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:67015658 original size:80 final size:80
Alignment explanation
Indices: 67015559--67015821 Score: 438
Period size: 80 Copynumber: 3.3 Consensus size: 80
67015549 TACTTGGTCG
* *
67015559 AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
67015624 CTAGTCACTAGCGCA
66 CTAGTCACTAGCGCA
* *
67015639 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-
* * *
67015704 A-TAGTAACTCGCACA
65 ACTAGTCACTAGCGCA
*
67015719 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
67015784 CTAGTCACTAGCGCA
66 CTAGTCACTAGCGCA
67015799 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
67015822 TTATCATCCA
Statistics
Matches: 168, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
79 1 0.01
80 166 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
CTAGTCACTAGCGCA
Found at i:67022226 original size:46 final size:44
Alignment explanation
Indices: 67022073--67022281 Score: 152
Period size: 46 Copynumber: 4.5 Consensus size: 44
67022063 ATTCTGAGCT
* * * * ** *
67022073 AGTGTAAGACATGTCTGCGATATGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAACAT-A-AGTC
* * * * **
67022119 AGTGTAAGACCATGTCTGGGACATGGTATTGGC-ATTAAGACGAGTAC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAACATAAGT-C
*
67022166 TAGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGACATAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGG-CTAC-A-ACATAAGTC
* **
67022213 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAACATAAGTC
67022257 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
67022282 GCATGGCACA
Statistics
Matches: 130, Mismatches: 22, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
44 15 0.12
45 18 0.14
46 46 0.35
47 30 0.23
48 21 0.16
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAACATAAGTC
Found at i:67022329 original size:140 final size:140
Alignment explanation
Indices: 67022073--67022336 Score: 306
Period size: 140 Copynumber: 1.9 Consensus size: 140
67022063 ATTCTGAGCT
*
67022073 AGTGTAAGACATGTCTGCGATATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGCGACATGCATCAGCCACA-TATGAGAGCCAGTGTAAGACCATGTCTGG
* * * *
67022138 GACATGGTATTGGCATTAAGACGAGTACTAGTGTAAGACATGTTTGGGACAT-GCATCGGCCTCG
65 GACATGGCATTGGCAATAAGACGAGTACTAGTGTAAGACATGTCTGAGACATGGCATCGGCCTCG
67022202 AGACATAAGTC
130 AGACATAAGTC
* * * * *
67022213 AGTGTAAGACATGTCTGGGACATGCATCGGCTACA-A-GATGTGTCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGCGACATGCATCAGCCACATATGA-GAGCCAGTGTAAGACCATGTCTGG
* * *
67022276 GACATGGCA-TGGCACAGATATG-CTAG-AGCTTGTGTAAGACCATGTCTGAGACATGGCATCG
65 GACATGGCATTGG--CA-ATAAGACGAGTA-CTAGTGTAAGA-CATGTCTGAGACATGGCATCG
67022337 ACACCGTACC
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
137 5 0.05
138 32 0.31
139 15 0.14
140 46 0.44
141 6 0.06
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGCGACATGCATCAGCCACATATGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATTGGCAATAAGACGAGTACTAGTGTAAGACATGTCTGAGACATGGCATCGGCCTCGA
GACATAAGTC
Found at i:67027397 original size:28 final size:28
Alignment explanation
Indices: 67027336--67027416 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
67027326 AGCATAACTG
* **
67027336 TAAATGTTATTGGGCCTAAT-GGCCGTA
1 TAAATGTGATTGGGCCTAATGGGCCACA
* *
67027363 TGAATGTGATTGGGCCTAATGGGCCACC
1 TAAATGTGATTGGGCCTAATGGGCCACA
67027391 TAAATGTGATTGGGCCTAATGGGCCA
1 TAAATGTGATTGGGCCTAATGGGCCA
67027417 TATACAGGTA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 18 0.38
28 29 0.62
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAATGGGCCACA
Found at i:67034836 original size:8 final size:8
Alignment explanation
Indices: 67034807--67034857 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
67034797 TTAGATTGGC
67034807 AAAAGCCG
1 AAAAGCCG
* *
67034815 AAATGCCA
1 AAAAGCCG
*
67034823 AAAAGCAG
1 AAAAGCCG
67034831 AAAAGCCG
1 AAAAGCCG
* *
67034839 AAATGCTG
1 AAAAGCCG
67034847 AAAAGCCG
1 AAAAGCCG
67034855 AAA
1 AAA
67034858 GTTTGGCTAT
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.53, C:0.20, G:0.22, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:67047198 original size:46 final size:45
Alignment explanation
Indices: 67047064--67047232 Score: 139
Period size: 46 Copynumber: 3.6 Consensus size: 45
67047054 GGTAAGGTGC
**
67047064 CGATGCCATGTCCCAGACATGGTCTTACAGTGACTATCA-TCTCATA-G-
1 CGATG-CATGTCCCAGACAT-GTCTTACACAGACT-T-AGTCTCA-AGGA
* *
67047111 CTGATGCATGTCCCAGACATGTCTTACACAGGCTTACGTCTCGAGGA
1 C-GATGCATGTCCCAGACATGTCTTACACAGACTTA-GTCTCAAGGA
* * *
67047158 CGATGCATGTCCTAGACATGTCTTACACTAGCACTT-GTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACAC-AG-ACTTAGTCTCAAGGA
*
67047204 CGATGTCGTGTCCCAGACATGGTCTTACA
1 CGATG-CATGTCCCAGACAT-GTCTTACA
67047233 ATGGCTCTCA
Statistics
Matches: 102, Mismatches: 11, Indels: 17
0.78 0.08 0.13
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 54 0.53
47 30 0.29
48 15 0.15
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACAGACTTAGTCTCAAGGA
Found at i:67054021 original size:40 final size:40
Alignment explanation
Indices: 67053958--67054199 Score: 299
Period size: 40 Copynumber: 6.0 Consensus size: 40
67053948 GAATACAACT
* ** * * *
67053958 GGATATAACCACACGCACGAATGCCCTCGGGTCTTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
*
67053998 GGATATAACGACTTGCACAAATGCCTTCGGGTATTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
67054038 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
67054078 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
* * * * *
67054118 GGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAACCC
1 GGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGCCC
** * * *
67054158 GGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGCCC
67054198 GG
1 GG
67054200 GTATCATTCA
Statistics
Matches: 180, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 179 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
Found at i:67054354 original size:64 final size:64
Alignment explanation
Indices: 67054286--67054474 Score: 140
Period size: 64 Copynumber: 3.0 Consensus size: 64
67054276 GAACACAAAC
67054286 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCTGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCTGGGTACCATTCAAATACTCATACACACAT
* * * * *** * * ** * * ** * *
67054350 ATATCAATA--ATCATTACACATCCATA-TT-TCAT---TTTCGTTACTAAGGCTCAAACACAAA
1 ATATCACTAGCATAATTGC-CTTCGGGACTTAGCCTGGGTACCATT-CAAATACTCATACACACA
*
67054408 C
64 T
*
67054409 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCTGGGTACCATTCAAATACTCATACACACAT
67054473 AT
1 AT
67054475 TTCAATAATC
Statistics
Matches: 79, Mismatches: 37, Indels: 18
0.59 0.28 0.13
Matches are distributed among these distances:
58 4 0.05
59 21 0.27
60 4 0.05
61 10 0.13
62 9 0.11
63 4 0.05
64 23 0.29
65 4 0.05
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCTGGGTACCATTCAAATACTCATACACACAT
Found at i:67054387 original size:123 final size:123
Alignment explanation
Indices: 67054168--67054506 Score: 588
Period size: 123 Copynumber: 2.8 Consensus size: 123
67054158 GGATATAATT
* * * * * * *
67054168 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
67054233 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
67054291 ACTAGCATAATTGCCTTCGGGACTTAGCCTGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
67054356 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
67054414 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATTTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
67054479 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
67054507 CACATAATTC
Statistics
Matches: 205, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 205 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:67054490 original size:23 final size:23
Alignment explanation
Indices: 67054456--67054503 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
67054446 GTACCATTCA
*
67054456 AATACTCATACACA-CATATTTC
1 AATAATCATACACACCATATTTC
67054478 AATAATCATTACACATCCATATTTC
1 AATAATCA-TACACA-CCATATTTC
67054503 A
1 A
67054504 TTTCACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 6 0.27
25 9 0.41
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.33
Consensus pattern (23 bp):
AATAATCATACACACCATATTTC
Found at i:67059619 original size:66 final size:68
Alignment explanation
Indices: 67059543--67059729 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
67059533 TAGTACCACT
*
67059543 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
67059605 CACG
65 CACG
67059609 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
67059674 ATCACG
63 ATCACG
67059680 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
67059730 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:67059654 original size:71 final size:71
Alignment explanation
Indices: 67059566--67059729 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67059556 CGATTTGTCT
67059566 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67059631 CTTTCA
66 CTTTCA
67059637 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67059702 CTTTCA
66 CTTTCA
67059708 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
67059730 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:67059767 original size:71 final size:70
Alignment explanation
Indices: 67059566--67059763 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
67059556 CGATTTGTCT
* * *
67059566 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
67059631 CTTTCA
65 CTTTCA
* * *
67059637 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
67059702 CTTTCA
65 CTTTCA
* *
67059708 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
67059764 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:67067187 original size:66 final size:68
Alignment explanation
Indices: 67067111--67067297 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
67067101 TAGTACCACT
*
67067111 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
67067173 CACG
65 CACG
67067177 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
67067242 ATCACG
63 ATCACG
67067248 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
67067298 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:67067222 original size:71 final size:71
Alignment explanation
Indices: 67067134--67067297 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67067124 CGATTTGTCT
67067134 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67067199 CTTTCA
66 CTTTCA
67067205 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67067270 CTTTCA
66 CTTTCA
67067276 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
67067298 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:67067335 original size:71 final size:70
Alignment explanation
Indices: 67067134--67067331 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
67067124 CGATTTGTCT
* * *
67067134 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
67067199 CTTTCA
65 CTTTCA
* * *
67067205 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
67067270 CTTTCA
65 CTTTCA
* *
67067276 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
67067332 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:67070479 original size:29 final size:29
Alignment explanation
Indices: 67070446--67070606 Score: 171
Period size: 29 Copynumber: 5.6 Consensus size: 29
67070436 GTGACGAGAT
67070446 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
67070475 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
67070504 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
67070533 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
67070562 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
67070591 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67070607 AAATCGAGTA
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 110 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:67070643 original size:2 final size:2
Alignment explanation
Indices: 67070638--67070664 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67070628 GTGTGCCTAC
67070638 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
67070665 CTCCGATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67072222 original size:41 final size:41
Alignment explanation
Indices: 67072176--67072262 Score: 131
Period size: 41 Copynumber: 2.1 Consensus size: 41
67072166 CACATGCCTG
**
67072176 TGTCCCTGGCCTGTGTCCTTCACACGGCC-ATGACACGCCCA
1 TGTCCCTGGCCCCTGTCCTTCACACGGCCAAT-ACACGCCCA
*
67072217 TGTCCCTGGCCCCTGTCCTTCACACGGCCAATACATGCCCA
1 TGTCCCTGGCCCCTGTCCTTCACACGGCCAATACACGCCCA
67072258 TGTCC
1 TGTCC
67072263 TAGCCCTGTG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
41 40 0.95
42 2 0.05
ACGTcount: A:0.15, C:0.43, G:0.20, T:0.23
Consensus pattern (41 bp):
TGTCCCTGGCCCCTGTCCTTCACACGGCCAATACACGCCCA
Found at i:67074467 original size:27 final size:28
Alignment explanation
Indices: 67074408--67074532 Score: 128
Period size: 29 Copynumber: 4.4 Consensus size: 28
67074398 GCATGAGTAT
*
67074408 AATGTGATTGGGGCCGGATGGGCCATATA
1 AATGAGATT-GGGCCGGATGGGCCATATA
* * *
67074437 AATGAGATTGGGCC-AATGGGTCATATG
1 AATGAGATTGGGCCGGATGGGCCATATA
* * *
67074464 AATGTGAATTGGGCCTGATGGGCTATATGA
1 AATGAG-ATTGGGCCGGATGGGCCATAT-A
*
67074494 ACGTGA-ATTGGGCCGGATGGGCCATATA
1 A-ATGAGATTGGGCCGGATGGGCCATATA
67074522 AATGAGATTGG
1 AATGAGATTGG
67074533 ACCTAGTGGG
Statistics
Matches: 77, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
27 18 0.23
28 20 0.26
29 36 0.47
30 1 0.01
31 2 0.03
ACGTcount: A:0.27, C:0.12, G:0.35, T:0.26
Consensus pattern (28 bp):
AATGAGATTGGGCCGGATGGGCCATATA
Found at i:67074532 original size:57 final size:56
Alignment explanation
Indices: 67074408--67074549 Score: 146
Period size: 57 Copynumber: 2.5 Consensus size: 56
67074398 GCATGAGTAT
* * *
67074408 AATGTGATTGGGGCCGGATGGGCCATAT-AAATGAGATTGGGCCAATGGGTCATATG
1 AATGTGATT-GGGCCTGATGGGCCATATGAAATGAGATTGGGCCAATGGGCCATATA
* * *
67074464 AATGTGAATTGGGCCTGATGGGCTATATGAACGTGA-ATTGGGCCGGATGGGCCATATA
1 AATGTG-ATTGGGCCTGATGGGCCATATGAA-ATGAGATTGGGCC-AATGGGCCATATA
* *
67074522 AATGAGATTGGACCT-AGTGGGCCATATG
1 AATGTGATTGGGCCTGA-TGGGCCATATG
67074550 TAGGTATGTA
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
56 23 0.32
57 31 0.43
58 18 0.25
ACGTcount: A:0.27, C:0.13, G:0.35, T:0.25
Consensus pattern (56 bp):
AATGTGATTGGGCCTGATGGGCCATATGAAATGAGATTGGGCCAATGGGCCATATA
Found at i:67074542 original size:28 final size:28
Alignment explanation
Indices: 67074408--67074548 Score: 126
Period size: 29 Copynumber: 5.0 Consensus size: 28
67074398 GCATGAGTAT
* *
67074408 AATGTGATTGGGGCCGGATGGGCCATATA
1 AATGAGATT-GGGCCAGATGGGCCATATA
* *
67074437 AATGAGATTGGGCCA-ATGGGTCATATG
1 AATGAGATTGGGCCAGATGGGCCATATA
* * *
67074464 AATGTGAATTGGGCCTGATGGGCTATATGA
1 AATGAG-ATTGGGCCAGATGGGCCATAT-A
* *
67074494 ACGTGA-ATTGGGCCGGATGGGCCATATA
1 A-ATGAGATTGGGCCAGATGGGCCATATA
*
67074522 AATGAGATTGGACCTAG-TGGGCCATAT
1 AATGAGATTGGGCC-AGATGGGCCATAT
67074549 GTAGGTATGT
Statistics
Matches: 90, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
27 18 0.20
28 32 0.36
29 37 0.41
30 1 0.01
31 2 0.02
ACGTcount: A:0.27, C:0.13, G:0.34, T:0.26
Consensus pattern (28 bp):
AATGAGATTGGGCCAGATGGGCCATATA
Found at i:67082387 original size:13 final size:13
Alignment explanation
Indices: 67082362--67082398 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
67082352 AACATCTCAT
67082362 ATAAA-GCAATAA
1 ATAAATGCAATAA
*
67082374 ATAAATGTAATAA
1 ATAAATGCAATAA
67082387 ATAAATGCAATA
1 ATAAATGCAATA
67082399 GTTATAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.62, C:0.05, G:0.08, T:0.24
Consensus pattern (13 bp):
ATAAATGCAATAA
Found at i:67089539 original size:47 final size:44
Alignment explanation
Indices: 67089466--67089593 Score: 143
Period size: 47 Copynumber: 2.8 Consensus size: 44
67089456 GGGTTATTGT
*
67089466 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATT-ATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGA-GAC
* *
67089512 GAGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATTGAGAC
67089558 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCG
67089594 GCTATGAGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 12
0.82 0.05 0.14
Matches are distributed among these distances:
45 6 0.08
46 22 0.31
47 28 0.39
48 16 0.22
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAC
Found at i:67090705 original size:29 final size:28
Alignment explanation
Indices: 67090650--67090706 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
67090640 ACACGGGCTG
*
67090650 GGACACGGGCGTGTCATGGCCGTGTGAA
1 GGACACGGGCGTGCCATGGCCGTGTGAA
67090678 GGACACGGGCATGTGCCA-GGCCGTGTGAA
1 GGACACGGGC--GTGCCATGGCCGTGTGAA
67090707 AACCCCTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 10 0.38
29 11 0.42
30 5 0.19
ACGTcount: A:0.19, C:0.23, G:0.42, T:0.16
Consensus pattern (28 bp):
GGACACGGGCGTGCCATGGCCGTGTGAA
Found at i:67093763 original size:2 final size:2
Alignment explanation
Indices: 67093756--67093790 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
67093746 ATGACATGTG
67093756 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67093791 GACTAGTCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:67095772 original size:21 final size:21
Alignment explanation
Indices: 67095729--67095772 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
67095719 ATTTCTGTTT
* *
67095729 AAAAAAATAGAAAAAAGATAA
1 AAAAAAAAAGAAAAAAGACAA
67095750 AAAAAAAAAGAGAAAAAG-CAA
1 AAAAAAAAAGA-AAAAAGACAA
67095771 AA
1 AA
67095773 GAATGAGTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.82, C:0.02, G:0.11, T:0.05
Consensus pattern (21 bp):
AAAAAAAAAGAAAAAAGACAA
Found at i:67097593 original size:15 final size:15
Alignment explanation
Indices: 67097573--67097605 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
67097563 CTCATGAATC
*
67097573 ATGTTTTTTATTTTG
1 ATGTTTTATATTTTG
67097588 ATGTTTTATATTTTG
1 ATGTTTTATATTTTG
67097603 ATG
1 ATG
67097606 ATATTCTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.67
Consensus pattern (15 bp):
ATGTTTTATATTTTG
Found at i:67099819 original size:42 final size:41
Alignment explanation
Indices: 67099759--67099884 Score: 216
Period size: 42 Copynumber: 3.0 Consensus size: 41
67099749 TGGGGCAGTC
67099759 CGTGTGTCACACATGGCCTAGACACATGCCGGTGTGTCTAA
1 CGTGTGTCACACATGGCCTAGACACATGCCGGTGTGTCTAA
* *
67099800 TCGTGTGTCACACACGGCCTAGACACATGCCGGCGTGTCTAA
1 -CGTGTGTCACACATGGCCTAGACACATGCCGGTGTGTCTAA
67099842 CAGTGTGTCACACATGGCCTAGACACATGCCGGTGTGTCTAA
1 C-GTGTGTCACACATGGCCTAGACACATGCCGGTGTGTCTAA
67099884 C
1 C
67099885 CATGTGGACA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
41 1 0.01
42 78 0.99
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (41 bp):
CGTGTGTCACACATGGCCTAGACACATGCCGGTGTGTCTAA
Found at i:67100759 original size:39 final size:39
Alignment explanation
Indices: 67100716--67100801 Score: 136
Period size: 39 Copynumber: 2.2 Consensus size: 39
67100706 TTTAGTTATT
* *
67100716 TTAGTTTGTGCCTTTAATTATGTCATAGTTTGAACATCA
1 TTAGTATGAGCCTTTAATTATGTCATAGTTTGAACATCA
*
67100755 TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
1 TTAGTATGAGCCTTTAATTATGTCATAGTTTGAACATCA
*
67100794 TTAATATG
1 TTAGTATG
67100802 TGTTCTGCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.45
Consensus pattern (39 bp):
TTAGTATGAGCCTTTAATTATGTCATAGTTTGAACATCA
Found at i:67100895 original size:40 final size:40
Alignment explanation
Indices: 67100841--67100918 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 40
67100831 TGTAACTCTC
* *
67100841 ATGTAAGTTAAGTTTGCATCA-TAAATTATGACATGCACT
1 ATGTAAGTTAAGTTTGAATCATTAAATTAAGACATGCACT
* *
67100880 ATGTTAGTTAAAGTTTGAATCATTAAATTAAGTCATGCA
1 ATGTAAGTT-AAGTTTGAATCATTAAATTAAGACATGCA
67100919 TTAACTCATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 8 0.24
40 11 0.33
41 14 0.42
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (40 bp):
ATGTAAGTTAAGTTTGAATCATTAAATTAAGACATGCACT
Found at i:67103122 original size:27 final size:27
Alignment explanation
Indices: 67103058--67103138 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
67103048 AGCATGGCTG
* * *
67103058 CCAGAACT-GATATTGTGACAGAGTCA
1 CCAGAATTAGATATTGTGGCAGAGCCA
* *
67103084 CTAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-TAGATATTGTGGCAGAGCCA
* *
67103111 CCAGAATTAGATAATGTGGCAAAGCCA
1 CCAGAATTAGATATTGTGGCAGAGCCA
67103138 C
1 C
67103139 TTAACAGAAT
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
25 1 0.02
26 3 0.07
27 37 0.86
28 2 0.05
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGAATTAGATATTGTGGCAGAGCCA
Found at i:67103357 original size:98 final size:98
Alignment explanation
Indices: 67103188--67103378 Score: 321
Period size: 98 Copynumber: 1.9 Consensus size: 98
67103178 TATAATCGGC
*
67103188 ACGAAGCCCACAATAACGGCACACAGCCTTCGATAACATGATCGGCACTCAGCCATTGATAACGG
1 ACGAAGCCCACAATAACGGCACACAGCCTTCGATAACATGATCGGCACTCAGCCATTGAAAACGG
* *
67103253 GTCTATAATCGGCACGAAGCCTATAATATCGAT
66 GTCTATAATCAGCACGAAGCCTACAATATCGAT
* *
67103286 ACGAAGCCCACAATAATGGCACACAGCCTTTTG-TAACATGATCGGCACTCAGCCATTGAAAACG
1 ACGAAGCCCACAATAACGGCACACAGCC-TTCGATAACATGATCGGCACTCAGCCATTGAAAACG
67103350 GGTCTATAATCAGCACGAAGCCTACAATA
65 GGTCTATAATCAGCACGAAGCCTACAATA
67103379 ACGGCACACA
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
98 84 0.97
99 3 0.03
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (98 bp):
ACGAAGCCCACAATAACGGCACACAGCCTTCGATAACATGATCGGCACTCAGCCATTGAAAACGG
GTCTATAATCAGCACGAAGCCTACAATATCGAT
Found at i:67103511 original size:27 final size:26
Alignment explanation
Indices: 67103429--67103505 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 26
67103419 TCGATCGGTC
*
67103429 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGTCACCAG
* *
67103455 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAAAGTCACCAG
*
67103482 AACAGATATTTGTGGCATAGTCAC
1 AACAGATA-TTGTGGCAAAGTCAC
67103506 TGGAACGCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
26 8 0.18
27 36 0.82
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGTCACCAG
Found at i:67103765 original size:27 final size:27
Alignment explanation
Indices: 67103735--67104030 Score: 364
Period size: 27 Copynumber: 11.0 Consensus size: 27
67103725 GGGGCAAAAT
* * *
67103735 GGTAATTTTACCCTACAAGGGGATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
67103762 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
67103789 AGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
67103816 GGTAATTCTACCTTA-TAGAGGTATTTT
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
67103843 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
67103870 GGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
67103897 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67103924 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
67103951 GGTAATTCTACCCTACAAGTGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
67103978 GGTAATTCTACCCTA-TAGTGGTATTTT
1 GGTAATTCTACCCTACAAG-GGTATTTC
*
67104005 AGTAA-TCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
67104031 AATAATTTTA
Statistics
Matches: 232, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
26 20 0.09
27 211 0.91
28 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:67104055 original size:27 final size:27
Alignment explanation
Indices: 67104021--67104200 Score: 186
Period size: 27 Copynumber: 6.7 Consensus size: 27
67104011 CTACCCTACA
*
67104021 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * **
67104048 AGGGTATTTCAATAATTTTGCAAATTA
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
67104075 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
67104102 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * * *
67104128 TCGGTATTTCAATAATTTTATAAACCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
67104155 GGGGTACTTT-GGTAATTTTACAACT-G
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
67104181 GGGGTATTTCAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
67104201 GTAAACTAAA
Statistics
Matches: 128, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
25 3 0.02
26 37 0.29
27 85 0.66
28 3 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:67104160 original size:53 final size:53
Alignment explanation
Indices: 67104021--67104200 Score: 175
Period size: 53 Copynumber: 3.4 Consensus size: 53
67104011 CTACCCTACA
* * * **
67104021 AGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAATAATTTTGCAAATTA
1 AGGGTATTTCAATAATTTTACAAACCGAGGGTATTTCAGTAATTTTAC-AATCG
** **
67104075 AGGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCG
1 AGGGTATTTCAATAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAATCG
** * * *
67104128 TCGGTATTTCAATAATTTTATAAACCGGGGGTACTTT-GGTAATTTTACAA-CTG
1 AGGGTATTTCAATAATTTTACAAACCGAGGGTA-TTTCAGTAATTTTACAATC-G
* *
67104181 GGGGTATTTCAGTAATTTTA
1 AGGGTATTTCAATAATTTTA
67104201 GTAAACTAAA
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.01
53 58 0.55
54 46 0.44
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
AGGGTATTTCAATAATTTTACAAACCGAGGGTATTTCAGTAATTTTACAATCG
Found at i:67106913 original size:46 final size:46
Alignment explanation
Indices: 67106860--67107038 Score: 206
Period size: 46 Copynumber: 3.9 Consensus size: 46
67106850 GGATATTTGG
67106860 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * *
67106906 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA
* *
67106952 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAA
1 -GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG--A
* *
67107001 GC--CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67107039 GCGGGTTACA
Statistics
Matches: 114, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 68 0.60
47 31 0.27
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:67107018 original size:93 final size:92
Alignment explanation
Indices: 67106859--67107030 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 92
67106849 GGGATATTTG
*
67106859 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCATCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCA-CCGAACTCGTTGAG
67106924 TTGAGTCCGAGTTCGTGAGATGTAACTA
65 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
67106952 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGC-CCGAGCTCGTTGA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCG--AGCACCGAACTCGTTGA
*
67107016 GTTGAGTCTGAGTTC
64 GTTGAGTCCGAGTTC
67107031 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
93 70 0.96
95 3 0.04
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCACCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:67109250 original size:27 final size:27
Alignment explanation
Indices: 67109212--67109265 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
67109202 TATGAAATGA
67109212 ATAGTATGAGGTATTAATAATTTATTT
1 ATAGTATGAGGTATTAATAATTTATTT
67109239 ATAGTATGAGGTATTAATAATTTATTT
1 ATAGTATGAGGTATTAATAATTTATTT
67109266 TTACTGATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (27 bp):
ATAGTATGAGGTATTAATAATTTATTT
Found at i:67110245 original size:11 final size:11
Alignment explanation
Indices: 67110229--67110257 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
67110219 GACTCGTGAA
67110229 GATTGGAAGAC
1 GATTGGAAGAC
67110240 GATTGGAAGAC
1 GATTGGAAGAC
67110251 GATTGGA
1 GATTGGA
67110258 GTATTGTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.38, T:0.21
Consensus pattern (11 bp):
GATTGGAAGAC
Found at i:67116068 original size:20 final size:20
Alignment explanation
Indices: 67116043--67116082 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
67116033 CGCCACATTG
*
67116043 AAATGGAATAGGATTAAAAT
1 AAATGGAATAGGAATAAAAT
67116063 AAATGGAATAGGAATAAAAT
1 AAATGGAATAGGAATAAAAT
67116083 GGAATAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (20 bp):
AAATGGAATAGGAATAAAAT
Found at i:67116084 original size:16 final size:16
Alignment explanation
Indices: 67116063--67116104 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
67116053 GGATTAAAAT
67116063 AAATGGAATAGGAATA
1 AAATGGAATAGGAATA
**
67116079 AAATGGAATAGGTTTA
1 AAATGGAATAGGAATA
*
67116095 AAATAGAATA
1 AAATGGAATA
67116105 AAGTTATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (16 bp):
AAATGGAATAGGAATA
Found at i:67118324 original size:40 final size:40
Alignment explanation
Indices: 67118271--67118346 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
67118261 AGTGTTTGTT
* *
67118271 TCGAGATAGCTTCGGTTATATATAGCACTTAGTGTGCATA
1 TCGAAATAACTTCGGTTATATATAGCACTTAGTGTGCATA
*
67118311 TCGAAATAACTTCGGTTATATATGGCACTTAGTGTG
1 TCGAAATAACTTCGGTTATATATAGCACTTAGTGTG
67118347 TAAGATCGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (40 bp):
TCGAAATAACTTCGGTTATATATAGCACTTAGTGTGCATA
Found at i:67120561 original size:93 final size:93
Alignment explanation
Indices: 67120449--67120620 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67120439 GCCCATAAGT
* *
67120449 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67120514 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
67120542 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67120607 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67120621 CAAACATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:67120616 original size:46 final size:46
Alignment explanation
Indices: 67120441--67120616 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
67120431 TGTAACCCGC
* * *
67120441 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
67120487 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
67120533 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
67120580 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67120617 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.62
47 33 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67123035 original size:30 final size:30
Alignment explanation
Indices: 67122991--67123079 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
67122981 CAAAGATAAC
67122991 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
67123020 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
67123050 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
67123080 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:67123039 original size:15 final size:15
Alignment explanation
Indices: 67122991--67123070 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
67122981 CAAAGATAAC
*
67122991 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67123005 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
67123020 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
67123035 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
67123050 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
67123065 AAGAAA
1 AAGAAA
67123071 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67123079 original size:15 final size:15
Alignment explanation
Indices: 67123002--67123079 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
67122992 AGAAAACCGA
67123002 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
67123017 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
67123031 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
67123046 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
67123062 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67123077 ATA
1 ATA
67123080 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Done.