Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 216 of 433
Found at i:67126138 original size:93 final size:93
Alignment explanation
Indices: 67126026--67126197 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67126016 GCCCATAAGT
* *
67126026 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67126091 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
67126119 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67126184 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67126198 CAAACATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:67126193 original size:46 final size:46
Alignment explanation
Indices: 67126018--67126193 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
67126008 TGTAACCCGC
* * *
67126018 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
67126064 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
67126110 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
67126157 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67126194 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.62
47 33 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67128908 original size:25 final size:25
Alignment explanation
Indices: 67128813--67128896 Score: 87
Period size: 25 Copynumber: 3.2 Consensus size: 25
67128803 AGTGGTAAGA
* *
67128813 TACTTTGATGTTTATAATGAGGAAT
1 TACTTTGATTTTTGTAATGAGGAAT
* * *
67128838 TACTTTGATTCTTCTACATTTTTAGGAAT
1 TACTTTGATTTTTGTA-A---TGAGGAAT
67128867 TACTTTGATTTTTGTAATGAGGAAT
1 TACTTTGATTTTTGTAATGAGGAAT
67128892 TACTT
1 TACTT
67128897 GTTTAGTTGT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
25 25 0.52
26 1 0.02
28 1 0.02
29 21 0.44
ACGTcount: A:0.27, C:0.08, G:0.15, T:0.49
Consensus pattern (25 bp):
TACTTTGATTTTTGTAATGAGGAAT
Found at i:67130183 original size:27 final size:27
Alignment explanation
Indices: 67130153--67130205 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
67130143 GACCCCAGTT
* *
67130153 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
*
67130180 TGTAAAATGACCGTAATACCCTTGTA
1 TGTAAAATGACCGAAATACCCTTGTA
67130206 TGGTAGAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:67133409 original size:27 final size:27
Alignment explanation
Indices: 67133379--67133443 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 27
67133369 GCATCTGATA
* *
67133379 CTGATTCTATATTGGGCTTAGGCCCAC
1 CTGATTCTATAATGGGCTAAGGCCCAC
* *
67133406 CTGATTTTGTTAATGGGCTAAGGCCCAC
1 CTGATTCT-ATAATGGGCTAAGGCCCAC
*
67133434 CTGATACTAT
1 CTGATTCTAT
67133444 TTTTGTGATG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 8 0.27
28 22 0.73
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGATTCTATAATGGGCTAAGGCCCAC
Found at i:67135739 original size:27 final size:27
Alignment explanation
Indices: 67135709--67135761 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
67135699 GACCCCAGTT
*
67135709 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
** *
67135736 TGTAAAATGATTGTAATACCCTTGTA
1 TGTAAAATGACCGAAATACCCTTGTA
67135762 TGGTAGAATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:67136242 original size:28 final size:27
Alignment explanation
Indices: 67136184--67136242 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
67136174 CATCTGATAC
* * *
67136184 TGATTCTGTATTGGGCTTAGGTCCACT
1 TGATTCTGTAATGGGCTAAGGTCCACA
67136211 TGATTCTGTTAATGGGCTAAGG-CCTACA
1 TGATTCTG-TAATGGGCTAAGGTCC-ACA
67136239 TGAT
1 TGAT
67136243 ACTATTTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 10 0.37
28 17 0.63
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.37
Consensus pattern (27 bp):
TGATTCTGTAATGGGCTAAGGTCCACA
Found at i:67137456 original size:23 final size:20
Alignment explanation
Indices: 67137408--67137445 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
67137398 TAACTGTCAA
67137408 TTTC-ATTATTTAAAATTTT
1 TTTCTATTATTTAAAATTTT
67137427 TTTCTATTATTT-AAATTTT
1 TTTCTATTATTTAAAATTTT
67137446 ATTTTATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTCTATTATTTAAAATTTT
Found at i:67143126 original size:52 final size:51
Alignment explanation
Indices: 67142997--67143128 Score: 185
Period size: 50 Copynumber: 2.6 Consensus size: 51
67142987 ATGTGTTCTG
* * * *
67142997 CATTTAATAAAGTCATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTTAACTTTGCAT
* *
67143048 CA-TAAATTATGACATGCATTATGTAACTCCCATGTTAGTTAAACTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTT-AACTTTGCAT
*
67143099 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
67143129 ATTTGTTCAT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 33 0.47
51 13 0.19
52 24 0.34
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATGTTAGTTAACTTTGCAT
Found at i:67145435 original size:29 final size:29
Alignment explanation
Indices: 67145402--67145457 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
67145392 GTTAATTTAT
*
67145402 GCAATTTATGGTGTAAGAGAAGGTGGTAA
1 GCAATTTATGGTGTAAGAGAAGATGGTAA
* *
67145431 GCAATTTGTGGTGTAGGAGAAGATGGT
1 GCAATTTATGGTGTAAGAGAAGATGGT
67145458 GAGCTTTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.38, T:0.29
Consensus pattern (29 bp):
GCAATTTATGGTGTAAGAGAAGATGGTAA
Found at i:67149736 original size:12 final size:12
Alignment explanation
Indices: 67149719--67149747 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
67149709 TTTAATATGT
67149719 TATTTCTGTATC
1 TATTTCTGTATC
67149731 TATTTCTGTATC
1 TATTTCTGTATC
67149743 TATTT
1 TATTT
67149748 TGGGATGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.14, G:0.07, T:0.62
Consensus pattern (12 bp):
TATTTCTGTATC
Found at i:67158140 original size:30 final size:30
Alignment explanation
Indices: 67158104--67158163 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
67158094 GAAGTTGATA
67158104 TACTTAATTTACTCAATTAAGCTTAAGAGC
1 TACTTAATTTACTCAATTAAGCTTAAGAGC
67158134 TACTTAATTTACTCAATTAAGCTTAAGAGC
1 TACTTAATTTACTCAATTAAGCTTAAGAGC
67158164 ACATAGGGAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (30 bp):
TACTTAATTTACTCAATTAAGCTTAAGAGC
Found at i:67158628 original size:39 final size:39
Alignment explanation
Indices: 67158584--67158775 Score: 321
Period size: 39 Copynumber: 4.9 Consensus size: 39
67158574 GTGCTGAGAT
* * *
67158584 TGTATCCGGGTTAGAGTCCCGCAGGCTTCGTGCTAGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
67158623 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
*
67158662 TGTATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
*
67158701 TGTATTCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
* *
67158740 TGTGTCCGGGCTAAAGACCCGCAGGCTTCGTGCTGG
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
67158776 TGCTGGTAAT
Statistics
Matches: 144, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 144 1.00
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
Found at i:67160778 original size:12 final size:12
Alignment explanation
Indices: 67160757--67160786 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
67160747 TTTAATATGT
*
67160757 TATTTCTGTATC
1 TATTTTTGTATC
67160769 TATTTTTGTATC
1 TATTTTTGTATC
67160781 TATTTT
1 TATTTT
67160787 GGAATGGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.10, G:0.07, T:0.67
Consensus pattern (12 bp):
TATTTTTGTATC
Found at i:67161000 original size:14 final size:14
Alignment explanation
Indices: 67160976--67161010 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
67160966 ATGGGGATAG
67160976 GATTCTGTATATTCT
1 GATTCTGTATATT-T
67160991 GATT-TGTATATTT
1 GATTCTGTATATTT
67161004 GATTCTG
1 GATTCTG
67161011 ATGACTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 10 0.53
15 4 0.21
ACGTcount: A:0.20, C:0.09, G:0.17, T:0.54
Consensus pattern (14 bp):
GATTCTGTATATTT
Found at i:67167834 original size:2 final size:2
Alignment explanation
Indices: 67167827--67167851 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
67167817 TCATGACATG
67167827 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
67167852 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67184009 original size:15 final size:16
Alignment explanation
Indices: 67183977--67184018 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
67183967 CAATACCAAG
*
67183977 AAAACAAACAAAGGTA
1 AAAAAAAACAAAGGTA
*
67183993 AAAAAAAAC-AA-GTT
1 AAAAAAAACAAAGGTA
67184007 AAAAAAAACAAA
1 AAAAAAAACAAA
67184019 ACACAACAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 11 0.48
15 4 0.17
16 8 0.35
ACGTcount: A:0.76, C:0.10, G:0.07, T:0.07
Consensus pattern (16 bp):
AAAAAAAACAAAGGTA
Found at i:67185553 original size:128 final size:128
Alignment explanation
Indices: 67185325--67185585 Score: 452
Period size: 128 Copynumber: 2.0 Consensus size: 128
67185315 ACAACGTAGA
* *
67185325 AAAGCTTCTACTCGAGGTAATACTCCATTTAAATCTTTTTCAAATCCATTGTATATTTCTAACAA
1 AAAGCTTCTACACGAGGTAATACTCCATTTAAATCTTTTTCAAATCCATTGTATACTTCTAACAA
*
67185390 GACCAGGAAACAAGCACCACAACCGCCACTACGGATTCGAGATCCAAGTGAATCCAGCAAACC
66 GACCAGGAAACAAGCACCACAACCGCCACTACGGATTCGAGATCCAAGCGAATCCAGCAAACC
* *
67185453 AAAGCTTCTACACGAGGTAATACTCTATTTAATTCTTTTTCAAATCCATTGTATACTTCTAACAA
1 AAAGCTTCTACACGAGGTAATACTCCATTTAAATCTTTTTCAAATCCATTGTATACTTCTAACAA
*
67185518 TG-CCAGGAAACAAGCACCACAACCGCCACTACGGATTCGAGATCCAAGCGATTCCAGCAAACC
66 -GACCAGGAAACAAGCACCACAACCGCCACTACGGATTCGAGATCCAAGCGAATCCAGCAAACC
67185581 AAAGC
1 AAAGC
67185586 CTTGGTCGTG
Statistics
Matches: 126, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
128 125 0.99
129 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (128 bp):
AAAGCTTCTACACGAGGTAATACTCCATTTAAATCTTTTTCAAATCCATTGTATACTTCTAACAA
GACCAGGAAACAAGCACCACAACCGCCACTACGGATTCGAGATCCAAGCGAATCCAGCAAACC
Found at i:67189869 original size:55 final size:55
Alignment explanation
Indices: 67189785--67189896 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
67189775 TTGGCGTCAA
*
67189785 CTTCAAGGATAAGTTCAAGTAGTTTGTGTTTGAATTTCAAATTTCAAATACAAGG
1 CTTCAAGGATAAGATCAAGTAGTTTGTGTTTGAATTTCAAATTTCAAATACAAGG
67189840 CTTCAAGGATAAGATCAAGTAGTTTGTGTTTGAATTTCAAATTTCAAATACAAGG
1 CTTCAAGGATAAGATCAAGTAGTTTGTGTTTGAATTTCAAATTTCAAATACAAGG
67189895 CT
1 CT
67189897 GCCATACAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.36
Consensus pattern (55 bp):
CTTCAAGGATAAGATCAAGTAGTTTGTGTTTGAATTTCAAATTTCAAATACAAGG
Found at i:67189936 original size:10 final size:10
Alignment explanation
Indices: 67189921--67189945 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
67189911 CCCATTTTAA
67189921 GAGTTATTAG
1 GAGTTATTAG
67189931 GAGTTATTAG
1 GAGTTATTAG
67189941 GAGTT
1 GAGTT
67189946 TAAAATTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (10 bp):
GAGTTATTAG
Found at i:67190629 original size:17 final size:17
Alignment explanation
Indices: 67190604--67190648 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 17
67190594 CAATACCAAG
*
67190604 AAAACAAACAAAAGTAA
1 AAAAAAAACAAAAGTAA
*
67190621 AAAAAAAAC--AAGTTA
1 AAAAAAAACAAAAGTAA
67190636 AAAAAAAACAAAA
1 AAAAAAAACAAAA
67190649 CACAACAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 14 0.58
17 10 0.42
ACGTcount: A:0.80, C:0.09, G:0.04, T:0.07
Consensus pattern (17 bp):
AAAAAAAACAAAAGTAA
Found at i:67190899 original size:17 final size:17
Alignment explanation
Indices: 67190854--67190899 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 17
67190844 GCATTTTTTT
67190854 TTTTTTCTTTCAACCCTA
1 TTTTTTCTTT-AACCCTA
67190872 TTTTTAT-TTTAACCCT-
1 TTTTT-TCTTTAACCCTA
67190888 TTATTTTCTTTA
1 TT-TTTTCTTTA
67190900 TCCTTGTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
16 3 0.12
17 13 0.52
18 8 0.32
19 1 0.04
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTTTCTTTAACCCTA
Found at i:67198799 original size:11 final size:11
Alignment explanation
Indices: 67198783--67198811 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
67198773 TGAACGAGTC
67198783 TCGAAAATCAG
1 TCGAAAATCAG
67198794 TCGAAAATCAG
1 TCGAAAATCAG
67198805 TC-AAAAT
1 TCGAAAAT
67198812 TTATTTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.48, C:0.17, G:0.14, T:0.21
Consensus pattern (11 bp):
TCGAAAATCAG
Found at i:67205837 original size:21 final size:21
Alignment explanation
Indices: 67205812--67205854 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
67205802 CGTAATTCGC
67205812 TATCAGTCAAACAGTAAACAA
1 TATCAGTCAAACAGTAAACAA
67205833 TATCAGTCAAACAGTAAACAA
1 TATCAGTCAAACAGTAAACAA
67205854 T
1 T
67205855 GCATGCAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.19, G:0.09, T:0.21
Consensus pattern (21 bp):
TATCAGTCAAACAGTAAACAA
Found at i:67205919 original size:33 final size:33
Alignment explanation
Indices: 67205868--67205932 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
67205858 TGCAGTAACA
* * * *
67205868 GTCTGGGCCTAAGCCCTATTCAGTAATAGTACG
1 GTCTAGGCCTAAGACCTATACAGTAACAGTACG
*
67205901 GTCTAGGCCTTAGACCTATACAGTAACAGTAC
1 GTCTAGGCCTAAGACCTATACAGTAACAGTAC
67205933 AGTGTAATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (33 bp):
GTCTAGGCCTAAGACCTATACAGTAACAGTACG
Found at i:67206136 original size:27 final size:26
Alignment explanation
Indices: 67206087--67206145 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
67206077 GCTGCCAGAA
*
67206087 ACAGTAAATGTGGCAAAGCCACCAGT
1 ACAGTAAATGTGACAAAGCCACCAGT
* * *
67206113 ATCAGTAATTGTGACATAGTCACCAGT
1 A-CAGTAAATGTGACAAAGCCACCAGT
67206140 ACAGTA
1 ACAGTA
67206146 CTTCCTCCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
ACAGTAAATGTGACAAAGCCACCAGT
Found at i:67206315 original size:27 final size:27
Alignment explanation
Indices: 67206284--67206477 Score: 244
Period size: 27 Copynumber: 7.2 Consensus size: 27
67206274 CATAATCATT
* * *
67206284 ATTTTACCATACAGGGGTATTACTGTC
1 ATTTTACCCTATAGGGGTATTACGGTC
*
67206311 ATTTTACCCTATAGGGGCATTACGGTC
1 ATTTTACCCTATAGGGGTATTACGGTC
* *
67206338 ATTTTACCCTACAGGGGTATTACGATC
1 ATTTTACCCTATAGGGGTATTACGGTC
* * * *
67206365 ATTTTACCCTATATGGGCATTATGATC
1 ATTTTACCCTATAGGGGTATTACGGTC
* * *
67206392 ATTTTACCTTATAGGGGCATTACGGCC
1 ATTTTACCCTATAGGGGTATTACGGTC
*
67206419 ATTTTACCCTACAGGGGTATTACGGTC
1 ATTTTACCCTATAGGGGTATTACGGTC
* *
67206446 ATTTTACCCTATAAGGGTATTGCGGTC
1 ATTTTACCCTATAGGGGTATTACGGTC
67206473 ATTTT
1 ATTTT
67206478 TGCGGTCATT
Statistics
Matches: 144, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
ATTTTACCCTATAGGGGTATTACGGTC
Found at i:67206475 original size:81 final size:81
Alignment explanation
Indices: 67206284--67206477 Score: 280
Period size: 81 Copynumber: 2.4 Consensus size: 81
67206274 CATAATCATT
* * * * *
67206284 ATTTTACCATACAGGGGTATTACTGTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCCTA
1 ATTTTACCCTATAAGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGGCCATTTTACCCTA
67206349 CAGGGGTATTACGATC
66 CAGGGGTATTACGATC
* * * * *
67206365 ATTTTACCCTATATGGGCATTATGATCATTTTACCTTATAGGGGCATTACGGCCATTTTACCCTA
1 ATTTTACCCTATAAGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGGCCATTTTACCCTA
*
67206430 CAGGGGTATTACGGTC
66 CAGGGGTATTACGATC
*
67206446 ATTTTACCCTATAAGGGTATTGCGGTCATTTT
1 ATTTTACCCTATAAGGGTATTACGGTCATTTT
67206478 TGCGGTCATT
Statistics
Matches: 98, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 98 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (81 bp):
ATTTTACCCTATAAGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGGCCATTTTACCCTA
CAGGGGTATTACGATC
Found at i:67206482 original size:12 final size:12
Alignment explanation
Indices: 67206465--67206489 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67206455 TATAAGGGTA
67206465 TTGCGGTCATTT
1 TTGCGGTCATTT
67206477 TTGCGGTCATTT
1 TTGCGGTCATTT
67206489 T
1 T
67206490 ACCCTATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.24, T:0.52
Consensus pattern (12 bp):
TTGCGGTCATTT
Found at i:67206495 original size:39 final size:39
Alignment explanation
Indices: 67206441--67206515 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
67206431 AGGGGTATTA
*
67206441 CGGTCATTTTACCCTATA-AGGGTATTGCGGTCATTTTTG
1 CGGTCATTTTACCCTATAGA-GGTATTACGGTCATTTTTG
*
67206480 CGGTCATTTTACCCTATAGAGGTATTATGGTCATTT
1 CGGTCATTTTACCCTATAGAGGTATTACGGTCATTT
67206516 AATTAATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 32 0.97
40 1 0.03
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.41
Consensus pattern (39 bp):
CGGTCATTTTACCCTATAGAGGTATTACGGTCATTTTTG
Found at i:67208178 original size:2 final size:2
Alignment explanation
Indices: 67208171--67208201 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
67208161 TTATATGTAA
*
67208171 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67208202 AATACCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:67209505 original size:25 final size:25
Alignment explanation
Indices: 67209472--67209540 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
67209462 CTCTTTTAAT
67209472 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
*
67209497 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGGTA
* *
67209522 AACAAGGGCATA-CCCTTTT
1 AACTAGGGCAAAGCCCTTTT
67209541 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 7 0.17
25 33 0.82
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGGTA
Found at i:67209780 original size:27 final size:27
Alignment explanation
Indices: 67209742--67209922 Score: 220
Period size: 27 Copynumber: 7.1 Consensus size: 27
67209732 AGGGGCAAAG
* * *
67209742 CGGTAATT-TACCCTAAAAGGGTATCT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
67209768 CGGTAATTCTACCTTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
67209795 CGGTAATTTTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
**
67209822 TAGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
67209849 CGGTAATTCTACCCTACAGGGGTA---
1 CGGTAATTCTACCCTACAGGGGTATTT
67209873 ---T--TT-TACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
67209894 CGATAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
67209921 CG
1 CG
67209923 ATATTTTACA
Statistics
Matches: 134, Mismatches: 11, Indels: 19
0.82 0.07 0.12
Matches are distributed among these distances:
18 15 0.11
19 2 0.01
21 1 0.01
24 1 0.01
26 10 0.07
27 105 0.78
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
CGGTAATTCTACCCTACAGGGGTATTT
Found at i:67209881 original size:18 final size:18
Alignment explanation
Indices: 67209858--67209893 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
67209848 TCGGTAATTC
67209858 TACCCTACAGGGGTATTT
1 TACCCTACAGGGGTATTT
67209876 TACCCTACAGGGGTATTT
1 TACCCTACAGGGGTATTT
67209894 CGATAATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (18 bp):
TACCCTACAGGGGTATTT
Found at i:67209895 original size:45 final size:45
Alignment explanation
Indices: 67209831--67209920 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
67209821 TTAGTAATTC
*
67209831 TACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
1 TACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
67209876 TACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
1 TACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
67209921 CGATATTTTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (45 bp):
TACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
Found at i:67209962 original size:27 final size:28
Alignment explanation
Indices: 67209911--67210076 Score: 130
Period size: 27 Copynumber: 6.1 Consensus size: 28
67209901 TCTACCCTAC
*
67209911 AGGGGTATTTCGAT-ATTTTACAAATCG
1 AGGGGTATTTTGATAATTTTACAAATCG
* *
67209938 A-GAGTATTTTGATAATTTCACAAATC-
1 AGGGGTATTTTGATAATTTTACAAATCG
* * *
67209964 AGGGGTATTTTGGTAATTTTAC-AAGCC
1 AGGGGTATTTTGATAATTTTACAAATCG
* **
67209991 AGGGGTATTTTGTTAATTTTACTGATCG
1 AGGGGTATTTTGATAATTTTACAAATCG
* ** *
67210019 A-GGGTATTTTGGTAATTTTGTAAA-CC
1 AGGGGTATTTTGATAATTTTACAAATCG
* **
67210045 AAGGGTATTTT-AGTAATTTTGTAAATCG
1 AGGGGTATTTTGA-TAATTTTACAAATCG
67210073 AGGG
1 AGGG
67210077 TAAAATAATA
Statistics
Matches: 112, Mismatches: 20, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
26 16 0.14
27 89 0.79
28 7 0.06
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (28 bp):
AGGGGTATTTTGATAATTTTACAAATCG
Found at i:67210008 original size:54 final size:53
Alignment explanation
Indices: 67209925--67210078 Score: 148
Period size: 54 Copynumber: 2.8 Consensus size: 53
67209915 GTATTTCGAT
* * *
67209925 ATTTTACAAATCGAGAGTATTTTGATAATTTCACAAATC-AGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTG-TAATTTCACAAATCGA-GGGTATTTTGGTA
* * * **
67209979 ATTTTACAAGCCAGGGGTATTTTGTTAATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTG-TAATTTCACAAATCGAGGGTATTTTGGTA
** ***
67210033 ATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 ATTTTACAAACCAAGGGTATTTT-GTAATTTCACAAATCGAGGGTA
67210079 AAATAATAAT
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
54 79 0.98
55 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (53 bp):
ATTTTACAAACCAAGGGTATTTTGTAATTTCACAAATCGAGGGTATTTTGGTA
Found at i:67210036 original size:81 final size:80
Alignment explanation
Indices: 67209910--67210064 Score: 193
Period size: 81 Copynumber: 1.9 Consensus size: 80
67209900 TTCTACCCTA
* *
67209910 CAGGGGTATTTCGATATTTTACAAATCGAGAGTATTTTGATAATTTCACAAATCAGGGGTATTTT
1 CAGGGGTATTTCGATATTTTACAAATCGAGAGTATTTTGATAATTTCACAAACCAAGGGTATTTT
*
67209975 GGTAATTTTACAAGC
66 AGTAATTTTACAAGC
* * ** * * ***
67209990 CAGGGGTATTTTGTTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 CAGGGGTATTTCGAT-ATTTTACAAATCGAGAGTATTTTGATAATTTCACAAACCAAGGGTATTT
67210055 TAGTAATTTT
65 TAGTAATTTT
67210065 GTAAATCGAG
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 13 0.21
81 49 0.79
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
CAGGGGTATTTCGATATTTTACAAATCGAGAGTATTTTGATAATTTCACAAACCAAGGGTATTTT
AGTAATTTTACAAGC
Found at i:67210077 original size:27 final size:27
Alignment explanation
Indices: 67210056--67210258 Score: 262
Period size: 27 Copynumber: 7.5 Consensus size: 27
67210046 AGGGTATTTT
*
67210056 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* *
67210083 AATAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* * **
67210110 GGTAATTCTGTAAATTAAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* *
67210137 AGTAATTTTGTAAATCAAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGTAAAAC
*
67210164 GGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
* *
67210191 AGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
***
67210218 AGTAATTTTGTAAATCGAGGGTACTTC
1 AGTAATTTTGTAAATCGAGGGTAAAAC
*
67210245 AGTAATTTGGTAAA
1 AGTAATTTTGTAAA
67210259 CAAAAGTATT
Statistics
Matches: 153, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.32
Consensus pattern (27 bp):
AGTAATTTTGTAAATCGAGGGTAAAAC
Found at i:67210100 original size:81 final size:81
Alignment explanation
Indices: 67210029--67210240 Score: 280
Period size: 81 Copynumber: 2.6 Consensus size: 81
67210019 AGGGTATTTT
* **** *
67210029 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAATAATTCTGT
1 GGTAATTCTGTAAACCAAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAATAATAATTCTGT
67210094 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
** ** *
67210110 GGTAATTCTGTAAATTAAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTTTGT
1 GGTAATTCTGTAAACCAAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAATAATAATTCTGT
67210175 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* *** *
67210191 AGTAATTCTGTAAATTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTA
1 GGTAATTCTGTAAACCAAGGGTAAAACAGTAATTTTGTAAATCAAGGGTA
67210241 CTTCAGTAAT
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 117 1.00
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (81 bp):
GGTAATTCTGTAAACCAAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAATAATAATTCTGT
AAATCGAGGGTAAAAC
Found at i:67210252 original size:81 final size:81
Alignment explanation
Indices: 67210056--67210240 Score: 316
Period size: 81 Copynumber: 2.3 Consensus size: 81
67210046 AGGGTATTTT
* * *
67210056 AGTAATTTTGTAAATCGAGGGTAAAATAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGT
1 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
67210121 AAATTAAGGGTAAAAC
66 AAATTAAGGGTAAAAC
* *
67210137 AGTAATTTTGTAAATCAAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
*
67210202 AAATTGAGGGTAAAAC
66 AAATTAAGGGTAAAAC
67210218 AGTAATTTTGTAAATCGAGGGTA
1 AGTAATTTTGTAAATCGAGGGTA
67210241 CTTCAGTAAT
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 97 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (81 bp):
AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
AAATTAAGGGTAAAAC
Found at i:67212485 original size:25 final size:25
Alignment explanation
Indices: 67212454--67212523 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
67212444 CTCTTTTAAT
* *
67212454 AACTGGGGCAAAGCTCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
67212479 AACTGGGGCAAACCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCAGTA
*
67212504 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
67212524 AGCATTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAGTA
Found at i:67212757 original size:27 final size:27
Alignment explanation
Indices: 67212701--67212951 Score: 234
Period size: 27 Copynumber: 10.0 Consensus size: 27
67212691 GGGGCAAAAT
* * * *
67212701 GGTAATT-TACCCCAAAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
67212727 GGTAATTCTTCCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67212754 GGTAATTCTACCCTATAGAGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67212781 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67212808 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67212835 GGTAATTCTACCCTACA--GG------
1 GGTAATTCTACCCTACAGGGGTATTTC
67212854 GGT-ATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67212880 GATAATTTTACCCTACA--GG------
1 GGTAATTCTACCCTACAGGGGTATTTC
67212899 GGT-ATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67212925 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67212952 AATATTTTAC
Statistics
Matches: 185, Mismatches: 21, Indels: 37
0.76 0.09 0.15
Matches are distributed among these distances:
18 25 0.14
19 5 0.03
20 4 0.02
25 4 0.02
26 12 0.06
27 135 0.73
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:67212786 original size:54 final size:54
Alignment explanation
Indices: 67212719--67212951 Score: 189
Period size: 45 Copynumber: 4.6 Consensus size: 54
67212709 ACCCCAAAAG
* * * * * * * *
67212719 GGTATCTCGGTAATTCTTCCTTATAGGGGTATTTTGGTAATTCTACCCTATAGA
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGA
* *
67212773 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGA
* *
67212827 GGTATTTCGGTAATTCTACCCTACA-GGG------G-T-ATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGA
* *
67212872 GGTATTTC-GATAATTTTACCCTACA-GGG------G-T-ATTCTACCCTACAGG
1 GGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGA
*
67212917 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
67212952 AATATTTTAC
Statistics
Matches: 156, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
44 1 0.01
45 79 0.51
46 5 0.03
47 1 0.01
53 3 0.02
54 67 0.43
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (54 bp):
GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGA
Found at i:67212862 original size:18 final size:18
Alignment explanation
Indices: 67212839--67212922 Score: 87
Period size: 18 Copynumber: 4.2 Consensus size: 18
67212829 TATTTCGGTA
67212839 ATTCTACCCTACAGGGGT
1 ATTCTACCCTACAGGGGT
67212857 ATTCTACCCTACAGGGGT
1 ATTCTACCCTACAGGGGT
67212875 ATTTCGATAATTTTACCCTACAGGGGT
1 A-TTC--------TACCCTACAGGGGT
67212902 ATTCTACCCTACAGGGGT
1 ATTCTACCCTACAGGGGT
67212920 ATT
1 ATT
67212923 TCGGTAATTC
Statistics
Matches: 57, Mismatches: 0, Indels: 18
0.76 0.00 0.24
Matches are distributed among these distances:
18 36 0.63
19 3 0.05
26 3 0.05
27 15 0.26
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (18 bp):
ATTCTACCCTACAGGGGT
Found at i:67212876 original size:45 final size:45
Alignment explanation
Indices: 67212812--67212949 Score: 258
Period size: 45 Copynumber: 3.1 Consensus size: 45
67212802 TATTTCGATA
67212812 ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGT
1 ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGT
* *
67212857 ATTCTACCCTACAGGGGTATTTCGATAATTTTACCCTACAGGGGT
1 ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGT
67212902 ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGT
1 ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGT
67212947 ATT
1 ATT
67212950 TCAATATTTT
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (45 bp):
ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGT
Found at i:67212933 original size:72 final size:71
Alignment explanation
Indices: 67212758--67212961 Score: 209
Period size: 72 Copynumber: 2.8 Consensus size: 71
67212748 TATTTTGGTA
* ** *
67212758 ATTCTACCCTATAGAGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA
1 ATTCTACCCTACAG-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTTTACCCTA
67212823 CAGGGGT
65 CAGGGGT
** ** ****
67212830 ATTTCGGTAATTCTAC--CCTACAGGGGT-ATTCTACCCTACAGGGGTATTTCGATAATTTTACC
1 A-TTC--T-ACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTTTACC
67212892 CTACAGGGGT
62 CTACAGGGGT
*
67212902 ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAAT-ATTTTAC
1 ATTCTACCCTACA-GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTTTAC
67212962 AAATCAAGAG
Statistics
Matches: 104, Mismatches: 20, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
68 5 0.05
69 1 0.01
71 15 0.14
72 71 0.68
73 7 0.07
75 1 0.01
76 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (71 bp):
ATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTTTACCCTAC
AGGGGT
Found at i:67212990 original size:27 final size:27
Alignment explanation
Indices: 67212955--67213067 Score: 91
Period size: 27 Copynumber: 4.2 Consensus size: 27
67212945 GTATTTCAAT
67212955 ATTTTACAAATCAAGAGTATTTTGATA
1 ATTTTACAAATCAAGAGTATTTTGATA
* * * * *
67212982 ATTTCACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAATCAAGAGTATTTTGATA
** * * *
67213009 ATTTTACAAGCCAGGGGTATTTTGTTA
1 ATTTTACAAATCAAGAGTATTTTGATA
** * * *
67213036 ATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTACAAATCAAGAGTATTTTGATA
67213063 ATTTT
1 ATTTT
67213068 GTAAACCAAG
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.43
Consensus pattern (27 bp):
ATTTTACAAATCAAGAGTATTTTGATA
Found at i:67213079 original size:27 final size:27
Alignment explanation
Indices: 67212996--67213098 Score: 91
Period size: 27 Copynumber: 3.8 Consensus size: 27
67212986 CACAAATTAG
** * *
67212996 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTGTAAACCAA
* * * * *
67213023 GGGTATTTTGTTAATTTTACT-GATCGA
1 GGGTATTTTGGTAATTTT-GTAAACCAA
67213050 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTGTAAACCAA
**
67213077 GGGTATTTCAGTAATTTTGTAA
1 GGGTATTTTGGTAATTTTGTAA
67213099 GTCAAGAGTA
Statistics
Matches: 59, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
26 1 0.02
27 58 0.98
ACGTcount: A:0.26, C:0.08, G:0.23, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAACCAA
Found at i:67213118 original size:27 final size:27
Alignment explanation
Indices: 67213061--67213288 Score: 186
Period size: 27 Copynumber: 8.4 Consensus size: 27
67213051 GGTATTTTGG
* * *** *
67213061 TAATTTTGTAAACCAAGGGTATTTCAG
1 TAATTTTGTAAATCGAGGGTAAAACAA
* * *
67213088 TAATTTTGTAAGTCAAGAGTAAAACAA
1 TAATTTTGTAAATCGAGGGTAAAACAA
* **
67213115 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAACAA
* * ** *
67213142 TAATTCTATAAATTAAGGGTAAAATAA
1 TAATTTTGTAAATCGAGGGTAAAACAA
* ***
67213169 TAATTTTGTAAATTGAGGGTAAAATGG
1 TAATTTTGTAAATCGAGGGTAAAACAA
*
67213196 TAATTTTGTAAATTGAGGGTAAAACAA
1 TAATTTTGTAAATCGAGGGTAAAACAA
* **
67213223 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAAACAA
* ***
67213250 TAATTTTGTAAATTGAGGGTATTTCAA
1 TAATTTTGTAAATCGAGGGTAAAACAA
*
67213277 TAATTTGGTAAA
1 TAATTTTGTAAA
67213289 AAAAGTATTC
Statistics
Matches: 162, Mismatches: 39, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 162 1.00
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (27 bp):
TAATTTTGTAAATCGAGGGTAAAACAA
Found at i:67213255 original size:54 final size:54
Alignment explanation
Indices: 67213087--67213270 Score: 269
Period size: 54 Copynumber: 3.4 Consensus size: 54
67213077 GGGTATTTCA
* * *
67213087 GTAATTTTGTAAGTCAAGAGTAAAACAATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATTAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACG
* * * * * *
67213141 GTAATTCTATAAATTAAGGGTAAAATAATAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATTAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACG
*
67213195 GTAATTTTGTAAATTGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATTAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACG
*
67213249 GTAATTTTGTAAATTGAGGGTA
1 GTAATTTTGTAAATTAAGGGTA
67213271 TTTCAATAAT
Statistics
Matches: 114, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 114 1.00
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.32
Consensus pattern (54 bp):
GTAATTTTGTAAATTAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACG
Found at i:67213263 original size:81 final size:81
Alignment explanation
Indices: 67213115--67213270 Score: 222
Period size: 81 Copynumber: 1.9 Consensus size: 81
67213105 AGTAAAACAA
** * *
67213115 TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTAAGGGTAAAATAATAATTTTGTAA
1 TAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCAAGGGTAAAACAATAATTTTGTAA
67213180 ATTGAGGGTAAAATGG
66 ATTGAGGGTAAAATGG
* * * * **
67213196 TAATTTTGTAAATTGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAA
1 TAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCAAGGGTAAAACAATAATTTTGTAA
67213261 ATTGAGGGTA
66 ATTGAGGGTA
67213271 TTTCAATAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.40, C:0.05, G:0.22, T:0.33
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAACAATAATTCTATAAATCAAGGGTAAAACAATAATTTTGTAA
ATTGAGGGTAAAATGG
Found at i:67213281 original size:81 final size:82
Alignment explanation
Indices: 67213088--67213288 Score: 210
Period size: 81 Copynumber: 2.5 Consensus size: 82
67213078 GGTATTTCAG
* ** * * **
67213088 TAATTTTGTAAGTCAAGAGTAAAA-CAATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 TAATTTTGTAAATTGAGGGTAAAATCAATAATTTTGTAAATCGAGGGTAAAACAATAATTCTATA
* *
67213152 AATTAAGGGTAAAATAA
66 AATCAAGGGTAAAACAA
** * *
67213169 TAATTTTGTAAATTGAGGGTAAAAT-GGTAATTTTGTAAATTGAGGGTAAAACAATAATTCTGTA
1 TAATTTTGTAAATTGAGGGTAAAATCAATAATTTTGTAAATCGAGGGTAAAACAATAATTCTATA
* **
67213233 AATCGAGGGTAAAACGG
66 AATCAAGGGTAAAACAA
** *
67213250 TAATTTTGTAAATTGAGGGT-ATTTCAATAATTTGGTAAA
1 TAATTTTGTAAATTGAGGGTAAAATCAATAATTTTGTAAA
67213289 AAAAGTATTC
Statistics
Matches: 97, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
80 2 0.02
81 95 0.98
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.33
Consensus pattern (82 bp):
TAATTTTGTAAATTGAGGGTAAAATCAATAATTTTGTAAATCGAGGGTAAAACAATAATTCTATA
AATCAAGGGTAAAACAA
Found at i:67216397 original size:46 final size:46
Alignment explanation
Indices: 67216347--67216522 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
67216337 TGGTTGAGCA
67216347 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67216393 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
67216438 CATCCGAACTCATTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67216486 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67216523 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67216503 original size:93 final size:93
Alignment explanation
Indices: 67216344--67216515 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67216334 GGATGGTTGA
* * *
67216344 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67216409 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
67216437 GCATCCGAACTCATTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67216502 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
67216516 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67223507 original size:40 final size:40
Alignment explanation
Indices: 67223441--67223591 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
67223431 AAATTGAATG
* * *
67223441 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67223480 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
67223520 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
67223560 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
67223592 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67223605 original size:40 final size:40
Alignment explanation
Indices: 67223478--67223607 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
67223468 ATGCTGGAAA
* * *
67223478 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
67223518 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
67223558 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
67223598 TTATATCCGG
1 TTATATCCGG
67223608 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:67228627 original size:40 final size:40
Alignment explanation
Indices: 67228582--67228749 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
67228572 CGGAATATAA
67228582 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
67228622 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
67228662 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
67228702 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67228742 CCGGATAT
1 CCGGATAT
67228750 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67234737 original size:40 final size:38
Alignment explanation
Indices: 67234672--67234818 Score: 124
Period size: 40 Copynumber: 3.8 Consensus size: 38
67234662 AAATTGAATG
*
67234672 ATATCCGGGCT-A-ACCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGC-GGAAATT
* * *
67234710 ATATCCGGGTTAAGACCCGAAGGCAA-TTGCGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCGGAAAT---T
**
67234750 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT--TGCG-GAAATT
*
67234790 CTATCCGGGCTAAGACCCGAAGGC-ATTTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTTG
67234819 TGCACATGGT
Statistics
Matches: 90, Mismatches: 10, Indels: 18
0.76 0.08 0.15
Matches are distributed among these distances:
37 4 0.04
38 15 0.17
39 3 0.03
40 63 0.70
42 4 0.04
43 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCGGAAATT
Found at i:67234835 original size:40 final size:39
Alignment explanation
Indices: 67234708--67234837 Score: 152
Period size: 40 Copynumber: 3.3 Consensus size: 39
67234698 ATGCTGGAAA
* * *
67234708 TTATATCCGGGTTAAGACCCGAAGGCAATTGCGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
67234748 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
67234788 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
67234828 TTATATCCGG
1 TTATATCCGG
67234838 TTATATTCCG
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 71 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:67237940 original size:46 final size:46
Alignment explanation
Indices: 67237890--67238065 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
67237880 TGGTTGAGCA
67237890 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
67237936 TCCGAACTCGTTGAGTTGAATCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
67237981 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67238029 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67238066 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67238046 original size:93 final size:93
Alignment explanation
Indices: 67237887--67238058 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67237877 GGATGGTTGA
* *
67237887 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67237952 TGAATCCGAGTTCGTGAGATGTAACTAG
66 TGAATCCGAGTTCGTGAGATGTAACTAG
* *
67237980 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
67238045 TGAGTCCGAGTTCG
66 TGAATCCGAGTTCG
67238059 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAATCCGAGTTCGTGAGATGTAACTAG
Found at i:67239469 original size:43 final size:40
Alignment explanation
Indices: 67239369--67239478 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 40
67239359 GGGGCGTTAC
* *
67239369 AATCACATGTCGATGCCACTATCCCAAATAGGGTCTTACACG
1 AATCACAT-TCGATGCCA-TGTCCCAAACAGGGTCTTACACG
* *
67239411 AATCACAGTTACGATGCCGATGTCCCAAACATGGTCTTACTCG
1 AATCACA-TT-CGATGCC-ATGTCCCAAACAGGGTCTTACACG
67239454 AAATCACATATCGATGCCAATGTCC
1 -AATCACAT-TCGATGCC-ATGTCC
67239479 TAGACGTGGG
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
42 8 0.14
43 41 0.71
44 9 0.16
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (40 bp):
AATCACATTCGATGCCATGTCCCAAACAGGGTCTTACACG
Found at i:67239493 original size:43 final size:43
Alignment explanation
Indices: 67239422--67239509 Score: 99
Period size: 43 Copynumber: 2.0 Consensus size: 43
67239412 ATCACAGTTA
* *
67239422 CGATGCCGATGTCCCAAACATGGTCTTAC-TCGA-AATCACATAT
1 CGATGCCAATGTCCCAAACATGGGCTTACAT-GAGAA-CACATAT
* * *
67239465 CGATGCCAATGTCCTAGACGTGGGCTTACATGAGAACACATAT
1 CGATGCCAATGTCCCAAACATGGGCTTACATGAGAACACATAT
67239508 CG
1 CG
67239510 GAAATCCTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
43 35 0.92
44 3 0.08
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
CGATGCCAATGTCCCAAACATGGGCTTACATGAGAACACATAT
Found at i:67243984 original size:56 final size:56
Alignment explanation
Indices: 67243923--67244033 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
67243913 GAAAATAAAG
*
67243923 AGGCCTTAATACAATCTAAATCAAAAACCAAAGTGCTTAACTAAAAAAACAAAATT
1 AGGCCTTAATACAACCTAAATCAAAAACCAAAGTGCTTAACTAAAAAAACAAAATT
*
67243979 AGGCCTTAATACAACCTAAATCAAAAACCAAAGTGCTTAACTAAATAAACAAAAT
1 AGGCCTTAATACAACCTAAATCAAAAACCAAAGTGCTTAACTAAAAAAACAAAAT
67244034 AGAAAAACAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.53, C:0.19, G:0.07, T:0.21
Consensus pattern (56 bp):
AGGCCTTAATACAACCTAAATCAAAAACCAAAGTGCTTAACTAAAAAAACAAAATT
Found at i:67244908 original size:27 final size:26
Alignment explanation
Indices: 67244834--67244922 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
67244824 CAAAACAATC
* * *
67244834 ATTTTATC-CTACAGGGGTATGTCGGTC
1 ATTTTA-CACTACAAGGGTATTTC-GTA
67244861 ATTTTACACTACAAGGGTATTTCAGTA
1 ATTTTACACTACAAGGGTATTTC-GTA
67244888 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCG-TA
67244915 ATTTTACA
1 ATTTTACA
67244923 AATCGGGGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
26 2 0.04
27 54 0.96
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (26 bp):
ATTTTACACTACAAGGGTATTTCGTA
Found at i:67244959 original size:81 final size:81
Alignment explanation
Indices: 67244874--67245192 Score: 384
Period size: 81 Copynumber: 4.0 Consensus size: 81
67244864 TTACACTACA
* * * * *
67244874 AGGGTATTTCAGTAATTTTAC-ACTACAAGGGTATTTCGATAATTTTACAAATCGGGGGTGTTTT
1 AGGGTATTTCAGTAATTTTACAAAT-CGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTC
*
67244938 AGTAATTTTACAAATTG
65 AGTAATTTTACAAATCG
* * *
67244955 AGGGTATTTC-GATAATTTTACAAATCGAGGGTATTTCGATAATTTTAAAAATCGAGCGTGTTTC
1 AGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTC
67245019 AGTAATTTTACAAATCG
65 AGTAATTTTACAAATCG
* *
67245036 AGGGTACTTT-AGTAATTTTAC-AATCGAGGGTA-TTCGATAATTTTACAAATTGAGGGTATTTT
1 AGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTC
*
67245098 AGTAATTTTGCAAATCG
65 AGTAATTTTACAAATCG
* * * *
67245115 AAGGTATTTCAATAATTTTACAAATCG-GGTGTACTTTAG-TAATTTTACAAA-CTGGGGGTATT
1 AGGGTATTTCAGTAATTTTACAAATCGAGG-GTA-TTTCGATAATTTTACAAATC-GAGGGTATT
67245177 TCAGTAATTTTACAAA
63 TCAGTAATTTTACAAA
67245193 CTAGGGATTT
Statistics
Matches: 208, Mismatches: 20, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.01
79 58 0.28
80 20 0.10
81 118 0.57
82 9 0.04
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCA
GTAATTTTACAAATCG
Found at i:67245194 original size:27 final size:27
Alignment explanation
Indices: 67244874--67245192 Score: 345
Period size: 27 Copynumber: 11.9 Consensus size: 27
67244864 TTACACTACA
* *
67244874 AGGGTATTTCAGTAATTTTAC-ACTACA
1 AGGGTATTTCAGTAATTTTACAAAT-CG
67244901 AGGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* * * *
67244928 GGGGTGTTTTAGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
67244955 AGGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
*
67244982 AGGGTATTTC-GATAATTTTAAAAATCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* *
67245009 AGCGTGTTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
67245036 AGGGTACTTT-AGTAATTTTAC-AATCG
1 AGGGTA-TTTCAGTAATTTTACAAATCG
*
67245062 AGGGTA-TTC-GATAATTTTACAAATTG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* *
67245088 AGGGTATTTTAGTAATTTTGCAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
67245115 AAGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
67245142 -GGTGTACTTT-AGTAATTTTACAAA-CTG
1 AGG-GTA-TTTCAGTAATTTTACAAATC-G
*
67245169 GGGGTATTTCAGTAATTTTACAAA
1 AGGGTATTTCAGTAATTTTACAAA
67245193 CTAGGGATTT
Statistics
Matches: 250, Mismatches: 26, Indels: 32
0.81 0.08 0.10
Matches are distributed among these distances:
24 3 0.01
25 9 0.04
26 28 0.11
27 197 0.79
28 13 0.05
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:67245574 original size:28 final size:28
Alignment explanation
Indices: 67245532--67245618 Score: 129
Period size: 28 Copynumber: 3.1 Consensus size: 28
67245522 GCCCATTTAA
* * *
67245532 GCCCAATCTCGTTCACATGGCCCATCAG
1 GCCCAATCACATTCATATGGCCCATCAG
* *
67245560 GCCCAATCATATTCATAAGGCCCATCAG
1 GCCCAATCACATTCATATGGCCCATCAG
67245588 GCCCAATCACATTCATATGGCCCATCAG
1 GCCCAATCACATTCATATGGCCCATCAG
67245616 GCC
1 GCC
67245619 AACTACTTCC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.26, C:0.37, G:0.16, T:0.21
Consensus pattern (28 bp):
GCCCAATCACATTCATATGGCCCATCAG
Found at i:67249156 original size:43 final size:42
Alignment explanation
Indices: 67249108--67249262 Score: 118
Period size: 43 Copynumber: 3.6 Consensus size: 42
67249098 ATATCGTAAA
* * *
67249108 ATGCCAACGTCCCAGACGTGGTCTTATATGTAATCACATGTCG
1 ATGCCAACATCCCAGACATGGTCTTATATGAAATCACAT-TCG
* * *
67249151 ATGCC-ACTATCCTAGACATGGTCTTACA-CAAATCACAATTACG
1 ATGCCAAC-ATCCCAGACATGGTCTTATATGAAATCAC-ATT-CG
* ** *
67249194 ATGCCGATGTCCCAAACATGGTCTTACT-TGAAATCACATATCG
1 ATGCCAACATCCCAGACATGGTCTTA-TATGAAATCACAT-TCG
* * *
67249237 ATGCGAACATCTCAGACGTGGTCTTA
1 ATGCCAACATCCCAGACATGGTCTTA
67249263 CACGAGAGCA
Statistics
Matches: 86, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
42 9 0.10
43 68 0.79
44 9 0.10
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCAACATCCCAGACATGGTCTTATATGAAATCACATTCG
Found at i:67252643 original size:17 final size:17
Alignment explanation
Indices: 67252610--67252644 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
67252600 ACCCACGTAA
* *
67252610 TATTTTTTTGTATTTTT
1 TATTTTTTTGCACTTTT
67252627 TATTTTTTTGCACTTTT
1 TATTTTTTTGCACTTTT
67252644 T
1 T
67252645 CGATCACTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.77
Consensus pattern (17 bp):
TATTTTTTTGCACTTTT
Found at i:67255743 original size:40 final size:40
Alignment explanation
Indices: 67255698--67255888 Score: 215
Period size: 40 Copynumber: 4.8 Consensus size: 40
67255688 CGGAATTTAG
* * *
67255698 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* ** * * *
67255738 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
67255778 CCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
67255818 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTT-AG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
67255857 CCGGATATAATCACTAGCATAAATGCCTTCGG
1 CCGGATATAATCACTAGCACAAATGCCTTCGG
67255889 ACTTAGCCCG
Statistics
Matches: 128, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.25
40 95 0.74
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:67255821 original size:80 final size:77
Alignment explanation
Indices: 67255685--67255899 Score: 234
Period size: 80 Copynumber: 2.7 Consensus size: 77
67255675 AACCGAGCTT
* * * * * **
67255685 CTTCGGAATTTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTA
1 CTTCGGGACTTAGCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATA
*
67255750 ACTTGCACAAATGC
64 ACTAGCACAAATGC
* *
67255764 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAG-CCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAAT
* *
67255829 CACTAGCATAAATGC
63 AACTAGCACAAATGC
* *
67255844 CTTCGGGACTTAGCCGGATATAATCACTAGCATAAATGCCTTC-GGACTTAGCCCGG
1 CTTCGGGACTTAGCCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
67255900 GTATCATTCA
Statistics
Matches: 115, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 12 0.10
79 36 0.31
80 65 0.57
81 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (77 bp):
CTTCGGGACTTAGCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATAAC
TAGCACAAATGC
Found at i:67262417 original size:40 final size:40
Alignment explanation
Indices: 67262362--67262529 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
67262352 TGAATGATAC
* *
67262362 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
67262402 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
67262442 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
67262482 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
67262522 CC-GGCTAA
1 CCGGGCTAA
67262530 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:67270440 original size:40 final size:40
Alignment explanation
Indices: 67270385--67270550 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
67270375 TGAATGATAC
* *
67270385 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
67270425 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
67270465 CCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
67270504 CCGGGTTAAGACCCGAAGGCAATTGTGCT-GTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
67270543 CC-GGCTAA
1 CCGGGCTAA
67270551 ATTCGAAGAA
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
38 6 0.06
39 37 0.35
40 60 0.57
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:67270524 original size:79 final size:79
Alignment explanation
Indices: 67270385--67270550 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 79
67270375 TGAATGATAC
* * ** *
67270385 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
67270449 GTGCGAGTTGTTATAT
65 GTGC-AGTGGTTATAT
* * *
67270465 CCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
*
67270529 TGCTGTGGTTATAT
66 TGCAGTGGTTATAT
67270543 CC-GGCTAA
1 CCGGGCTAA
67270551 ATTCGAAGAA
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
77 6 0.08
78 11 0.15
79 35 0.47
80 23 0.31
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCAGTGGTTATAT
Found at i:67275646 original size:39 final size:40
Alignment explanation
Indices: 67275530--67275759 Score: 240
Period size: 39 Copynumber: 5.8 Consensus size: 40
67275520 GGATATAACG
* *
67275530 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
* *
67275570 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
67275610 ACTCGCACAAATGCCTTCGGG-CTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
* *
67275649 ACACGCACAAATGCCTTCGGG-CTTAACCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * ** * *
67275688 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATAT-GTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTA
** *
67275727 ACTTAACACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
67275760 CATCATTCAA
Statistics
Matches: 165, Mismatches: 19, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 71 0.43
41 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:67275743 original size:78 final size:79
Alignment explanation
Indices: 67275530--67275759 Score: 218
Period size: 79 Copynumber: 2.9 Consensus size: 79
67275520 GGATATAACG
* * * * * * *
67275530 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACT
1 ACTCGCACAAACGCCTTCGGG-CTTAA-CCCGGATATAGTAACACACACAAATGCCTTCGGGACT
*
67275594 TAACCCGGGTTTAGTA
64 TAACCCGGATTTAGTA
* * *
67275610 ACTCGCACAAATGCCTTCGGGCTTAACCCGGATTTAGTAACACGCACAAATGCCTTCGGG-CTTA
1 ACTCGCACAAACGCCTTCGGGCTTAACCCGGATATAGTAACACACACAAATGCCTTCGGGACTTA
*
67275674 ACCCGGATTTATTA
66 ACCCGGATTTAGTA
* * ** *
67275688 ACTCGCACGAACGCCTTCGGATCTTAGTCCGGATAT-GTCACTTA-ACACAAA-GCCTTCGGGAC
1 ACTCGCACAAACGCCTTCGG-GCTTAACCCGGATATAGTAAC--ACACACAAATGCCTTCGGGAC
*
67275750 TTAGCCCGGA
63 TTAACCCGGA
67275760 CATCATTCAA
Statistics
Matches: 128, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
78 47 0.37
79 58 0.45
80 23 0.18
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
ACTCGCACAAACGCCTTCGGGCTTAACCCGGATATAGTAACACACACAAATGCCTTCGGGACTTA
ACCCGGATTTAGTA
Found at i:67283675 original size:39 final size:40
Alignment explanation
Indices: 67283559--67283724 Score: 223
Period size: 39 Copynumber: 4.2 Consensus size: 40
67283549 GGATATAACG
* *
67283559 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
* *
67283599 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
67283639 ACTCGCACAAATGCCTTCGGG-CTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * *
67283678 ACTCACACAAATGCCTTTGGG-CTTAACCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
67283717 ACTCGCAC
1 ACTCGCAC
67283725 GAACACCTTC
Statistics
Matches: 115, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 60 0.52
40 51 0.44
41 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:67283679 original size:79 final size:79
Alignment explanation
Indices: 67283559--67283724 Score: 221
Period size: 79 Copynumber: 2.1 Consensus size: 79
67283549 GGATATAACG
* * *
67283559 ACTCGCTCAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCACACAAATGCCTTCGGG-CTT
*
67283624 AACCCGGGTTTAGTA
65 AACCCGGATTTAGTA
* *
67283639 ACTCGCACAAATGCCTTCGGG-CTTAA-CCCGGATT-TAGTAACTCACACAAATGCCTTTGGGCT
1 ACTCGCACAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCACACAAATGCCTTCGGGCT
*
67283701 TAACCCGGATTTATTA
64 TAACCCGGATTTAGTA
67283717 ACTCGCAC
1 ACTCGCAC
67283725 GAACACCTTC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
78 24 0.31
79 29 0.38
80 24 0.31
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGACAAACCCCGGTTATAGTAACTCACACAAATGCCTTCGGGCTTA
ACCCGGATTTAGTA
Found at i:67283734 original size:78 final size:79
Alignment explanation
Indices: 67283586--67283788 Score: 207
Period size: 79 Copynumber: 2.6 Consensus size: 79
67283576 CGGGACAAAC
* * * *
67283586 CCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACAAAT
1 CCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAAC
*
67283651 GCCTTCGGGCTTAA
66 ACCTTCGGGCTTAA
* * *
67283665 CCCGGATT-TAGTAACTCACACAAATGCCTTTGGG-CTTAACCCGGATTTATTAACTCGCACGAA
1 CCCGG-TTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAA
** *
67283728 CACCTTCAGACCTTAG
65 CACCTTC-GGGCTTAA
* * * * *
67283744 TCCGGATAT-GTCACTTAACACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCCGGTTATAGTAAC-TCACACAAATGCCTTCGGGACTTAACCCGGA
67283789 CATCATTCAA
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
78 44 0.43
79 56 0.55
80 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (79 bp):
CCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAAC
ACCTTCGGGCTTAA
Found at i:67285559 original size:65 final size:65
Alignment explanation
Indices: 67285455--67285585 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
67285445 GCTGTCACAC
*
67285455 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
67285520 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
67285585 A
1 A
67285586 ACCCTAGGGG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATACATTCAGGTCAACCTT
Found at i:67285644 original size:27 final size:26
Alignment explanation
Indices: 67285588--67285644 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
67285578 CAACCTTAAC
* * *
67285588 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
67285614 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
67285641 CCTA
1 CCTA
67285645 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:67288055 original size:27 final size:26
Alignment explanation
Indices: 67288007--67288066 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
67287997 GCAAGGCTGC
*
67288007 CAGATATTATGACGAAGTCACCAGATA
1 CAGATATTATGACGAAGCCACCAGA-A
* * *
67288034 CAGATATTATGGCTAGGCCACCAGAA
1 CAGATATTATGACGAAGCCACCAGAA
*
67288060 AAGATAT
1 CAGATAT
67288067 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (26 bp):
CAGATATTATGACGAAGCCACCAGAA
Found at i:67298913 original size:46 final size:48
Alignment explanation
Indices: 67298804--67298917 Score: 133
Period size: 50 Copynumber: 2.4 Consensus size: 48
67298794 TGTCTTCAAC
** * *
67298804 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATTTATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-A-TTATATCTAAT
* * *
67298854 ATGGGCTTTCATGGCTCATTCCTGTCTCCAAAGCC-A-TATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATTATATCTAAT
67298900 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
67298918 CTTTTGTCCT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 25 0.45
48 1 0.02
50 29 0.53
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATTATATCTAAT
Found at i:67301811 original size:27 final size:26
Alignment explanation
Indices: 67301763--67301822 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
67301753 GTGAGGCTAC
*
67301763 CAGATATTGTGACGAAGTCACCAAATA
1 CAGATATTGTGACGAAGCCACCAAA-A
* * * *
67301790 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAAAA
67301816 CAGATAT
1 CAGATAT
67301823 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:67305008 original size:27 final size:26
Alignment explanation
Indices: 67304952--67305008 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
67304942 CAACCTTAAC
* * *
67304952 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
67304978 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
67305005 CCTA
1 CCTA
67305009 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:67309011 original size:15 final size:15
Alignment explanation
Indices: 67308984--67309026 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
67308974 GGTTTCGGAT
67308984 AGAA-GAAAAAGAAA
1 AGAAGGAAAAAGAAA
67308998 A-AAGGAAGAAAGAAA
1 AGAAGGAA-AAAGAAA
67309013 ATGAAGGAAAAAGA
1 A-GAAGGAAAAAGA
67309027 GAGGAAGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.08
14 4 0.16
15 8 0.32
16 5 0.20
17 6 0.24
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (15 bp):
AGAAGGAAAAAGAAA
Found at i:67312598 original size:50 final size:50
Alignment explanation
Indices: 67312523--67312884 Score: 388
Period size: 50 Copynumber: 7.2 Consensus size: 50
67312513 ACCGAAGCTC
* * *
67312523 TCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
67312573 TCTGGTACACGTAGTAACCTGCACTTAGTACTACACATGTGACCTAACCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * *
67312624 -C-GGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGCTA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* ** * *
67312674 TCGGGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* ** * *
67312724 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * *
67312774 TCAT-ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGCTA
1 TC-TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* ** * *
67312825 TCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
67312875 TCTGGTACAC
1 TCTGGTACAC
67312885 GTGACCTAAA
Statistics
Matches: 255, Mismatches: 50, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
49 2 0.01
50 173 0.68
51 78 0.31
52 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:67312767 original size:151 final size:151
Alignment explanation
Indices: 67312517--67312886 Score: 623
Period size: 151 Copynumber: 2.5 Consensus size: 151
67312507 CTTGTAACCG
* * *
67312517 AAGCTCTCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
** *
67312582 CGTAGTAACCTGCACTTAGTACTACACATGTGACCTAACCAACGGATACACATAGTAGCCTGCAC
66 CGTAGTAACCTGCACTTAGTACTACACACATGACCTAACCAACAGATACACATAGTAGCCTGCAC
67312647 TTAGTACTACACACGTGATCA
131 TTAGTACTACACACGTGATCA
* *
67312668 AAGCTATCGGGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
* * * * *
67312733 CGTAGTAGCCTGCACTTAGTACTACACACATGACCTATCCATCATATACACGTAGTAGCCTGCAC
66 CGTAGTAACCTGCACTTAGTACTACACACATGACCTAACCAACAGATACACATAGTAGCCTGCAC
67312798 TTAGTACTACACACGTGATCA
131 TTAGTACTACACACGTGATCA
67312819 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
67312884 CGT
66 CGT
67312887 GACCTAAAAC
Statistics
Matches: 204, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 204 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (151 bp):
AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
CGTAGTAACCTGCACTTAGTACTACACACATGACCTAACCAACAGATACACATAGTAGCCTGCAC
TTAGTACTACACACGTGATCA
Found at i:67312885 original size:101 final size:100
Alignment explanation
Indices: 67312526--67312886 Score: 400
Period size: 101 Copynumber: 3.6 Consensus size: 100
67312516 GAAGCTCTCT
* * * *
67312526 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAAC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACGTAGTAGC
* *
67312591 CTGCACTTAGTACTACACATGTGACCTAACCAACG
66 CTGCACTTAGTACTACACATGTGACCTAACTATCG
* * * * * * ** *
67312626 GATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGCTATCGGGTATGCATAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CAATCTGGTACACGTAGTAG
* * * *
67312691 CCTACACTTAGTACTACACATGCGACCTAACAATCT
65 CCTGCACTTAGTACTACACATGTGACCTAACTATCG
* ** * * *
67312727 GGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTATCCATCAT-ATACACGTAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATC-TGGTACACGTAGTAG
* * *
67312791 CCTGCACTTAGTACTACACACGTGATCAAAGCTATCG
65 CCTGCACTTAGTACTACACATGTGACCTAA-CTATCG
** * *
67312828 GGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACGT
67312887 GACCTAAAAC
Statistics
Matches: 210, Mismatches: 47, Indels: 7
0.80 0.18 0.03
Matches are distributed among these distances:
100 76 0.36
101 134 0.64
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACATGTGACCTAACTATCG
Found at i:67312934 original size:151 final size:150
Alignment explanation
Indices: 67312517--67312936 Score: 455
Period size: 151 Copynumber: 2.8 Consensus size: 150
67312507 CTTGTAACCG
* * *
67312517 AAGCTCTCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
* * * * * *
67312582 CGT-A-GTAACCTGCACTTAGTACTACACATGT-GACCTAACCAA-CGGATACACATAGTAGCCT
66 CGTGACCTAAACT-CACTT-CTA-AACACATGTAG-CCTAA-CAATAGTATACACATAGTAGCCT
67312643 GCACTTAGTACTACACACGTGATCA
126 GCACTTAGTACTACACACGTGATCA
* *
67312668 AAGCTATCGGGTATGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
** * * * * * * *
67312733 CGTAGTAGCCTGCACTTAGTACTACACACATG-A-CCTATCCATCA-TATACACGTAGTAGCCTG
66 CGT-G-A-CCTAAACTCACTTCTAAACACATGTAGCCTAACAAT-AGTATACACATAGTAGCCTG
67312795 CACTTAGTACTACACACGTGATCA
127 CACTTAGTACTACACACGTGATCA
67312819 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
* *
67312884 CGTGACCTAAAAC-CA-TTTTAAACACATAGTAGCCT-GCAAATAGTACTACACAT
66 CGTGACCT-AAACTCACTTCTAAACACAT-GTAGCCTAAC-AATAGTA-TACACAT
67312937 GTGTTCTCAC
Statistics
Matches: 224, Mismatches: 30, Indels: 30
0.79 0.11 0.11
Matches are distributed among these distances:
147 9 0.04
148 5 0.02
149 6 0.03
150 10 0.04
151 179 0.80
153 7 0.03
154 3 0.01
155 2 0.01
156 3 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (150 bp):
AAGCTATCGGGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
CGTGACCTAAACTCACTTCTAAACACATGTAGCCTAACAATAGTATACACATAGTAGCCTGCACT
TAGTACTACACACGTGATCA
Found at i:67316080 original size:30 final size:30
Alignment explanation
Indices: 67316046--67316133 Score: 99
Period size: 30 Copynumber: 2.9 Consensus size: 30
67316036 TGAGCTAAAA
*
67316046 TGAGCTAAGCTTTAGC-CCTTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCC-TAAGCTGAAGT
*
67316076 TGAGCTGAGATTATA-CTCCTAAGCTGAAGT
1 TGAGCTAAGATT-TAGCTCCTAAGCTGAAGT
* * *
67316106 TGAGCTAAGGTTTAGCTCATGAGCTGAA
1 TGAGCTAAGATTTAGCTCCTAAGCTGAA
67316134 TATAAACTAG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
29 2 0.04
30 43 0.88
31 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCCTAAGCTGAAGT
Found at i:67322047 original size:23 final size:23
Alignment explanation
Indices: 67322016--67322182 Score: 244
Period size: 23 Copynumber: 7.1 Consensus size: 23
67322006 CCTAGCCTCT
* *
67322016 TTTAATAACTGGGGCAAAAGCCC
1 TTTAGTAACTGGGGCATAAGCCC
67322039 TTTAGTAACTGGGGCATAAGCCC
1 TTTAGTAACTGGGGCATAAGCCC
*
67322062 TTTTGATAACTGGGGCATAAGCCC
1 TTTAG-TAACTGGGGCATAAGCCC
*
67322086 TTTAATAACTGGGGCATAAGCCC
1 TTTAGTAACTGGGGCATAAGCCC
*
67322109 TTTTGATAACTGGGGCATAAGCCC
1 TTTAG-TAACTGGGGCATAAGCCC
*
67322133 TTTAATAACTGGGGCATAAGCCC
1 TTTAGTAACTGGGGCATAAGCCC
*
67322156 TTTTGATAACTGGGGCATAAGCCC
1 TTTAG-TAACTGGGGCATAAGCCC
67322180 TTT
1 TTT
67322183 TGCACTTCCT
Statistics
Matches: 130, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
23 67 0.52
24 63 0.48
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAGTAACTGGGGCATAAGCCC
Found at i:67322076 original size:24 final size:24
Alignment explanation
Indices: 67322009--67322184 Score: 277
Period size: 24 Copynumber: 7.4 Consensus size: 24
67321999 TTGGAGGCCT
* *
67322009 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTGATAACTGGGGCATA
*
67322034 AGCCCTTTAG-TAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
67322057 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
*
67322081 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
67322104 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
*
67322128 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
67322151 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
67322175 AGCCCTTTTG
1 AGCCCTTTTG
67322185 CACTTCCTCC
Statistics
Matches: 140, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
23 65 0.46
24 71 0.51
25 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAACTGGGGCATA
Found at i:67322084 original size:47 final size:47
Alignment explanation
Indices: 67322009--67322182 Score: 312
Period size: 47 Copynumber: 3.7 Consensus size: 47
67321999 TTGGAGGCCT
* * *
67322009 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAGTAACTGGGGCATA
1 AGCC-CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
67322057 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
67322104 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
67322151 AGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTT
67322183 TGCACTTCCT
Statistics
Matches: 123, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
47 119 0.97
48 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
AGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
Found at i:67322257 original size:20 final size:20
Alignment explanation
Indices: 67322229--67322279 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
67322219 GCATTTATGA
*
67322229 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
67322249 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
67322269 ACATATCATGT
1 ACATATCATGT
67322280 TTATCAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:67322358 original size:25 final size:25
Alignment explanation
Indices: 67322316--67322365 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
67322306 ATATATAAAC
* * * *
67322316 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAACGGTCAATTTCA
67322341 CCTAGGGGCAAAACGGTCAATTTCA
1 CCTAGGGGCAAAACGGTCAATTTCA
67322366 TATTATAAGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCAATTTCA
Found at i:67326642 original size:39 final size:39
Alignment explanation
Indices: 67326583--67326737 Score: 256
Period size: 39 Copynumber: 4.0 Consensus size: 39
67326573 CCAGCACCAG
* *
67326583 CACGAAGCCTGCGGGTCTTTAGCCCGGACACATTTCCAA
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
*
67326622 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
67326661 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
** *
67326700 CACGAAGCCTATGGGACTTTAGGCCGGATACATTTCCA
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
67326738 GTGTCTTGCA
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (39 bp):
CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
Found at i:67342536 original size:20 final size:20
Alignment explanation
Indices: 67342495--67342536 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
67342485 CTAAACCAAT
**
67342495 AACTTATGAAATTTTTGGAA
1 AACTTATGAAATTTTTACAA
67342515 AACTTA-GAAATTTTTTACAA
1 AACTTATGAAA-TTTTTACAA
67342535 AA
1 AA
67342537 TACAAGGGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (20 bp):
AACTTATGAAATTTTTACAA
Found at i:67342593 original size:35 final size:37
Alignment explanation
Indices: 67342545--67342615 Score: 128
Period size: 35 Copynumber: 2.0 Consensus size: 37
67342535 AATACAAGGG
67342545 ACACATGCTCATGTAACCTAAACCCATGCTAGGGGAC
1 ACACATGCTCATGTAACCTAAACCCATGCTAGGGGAC
67342582 ACACA-GC-CATGTAACCTAAACCCATGCTAGGGGA
1 ACACATGCTCATGTAACCTAAACCCATGCTAGGGGA
67342616 ATTTCAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 27 0.79
36 2 0.06
37 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.20, T:0.17
Consensus pattern (37 bp):
ACACATGCTCATGTAACCTAAACCCATGCTAGGGGAC
Found at i:67343853 original size:64 final size:64
Alignment explanation
Indices: 67343745--67343869 Score: 169
Period size: 64 Copynumber: 2.0 Consensus size: 64
67343735 TCCGAAGAGC
* * * *
67343745 CATATAGCAGGACGCTCATAAAGAGCAACGGTATGTCTGCAACACATGCAGGATCACTACCAAT
1 CATATAACAGGACGCTCACAAAGAGCAACGGTATGTCCGCAACACATGCAGGATCAATACCAAT
*** * *
67343809 CATATAACAGGACGCTCACAAAGAGCTGTGGTATGTCCGTAACACATGTAGGATCAATACC
1 CATATAACAGGACGCTCACAAAGAGCAACGGTATGTCCGCAACACATGCAGGATCAATACC
67343870 GATCGGGATG
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (64 bp):
CATATAACAGGACGCTCACAAAGAGCAACGGTATGTCCGCAACACATGCAGGATCAATACCAAT
Found at i:67346695 original size:38 final size:38
Alignment explanation
Indices: 67346644--67346733 Score: 180
Period size: 38 Copynumber: 2.4 Consensus size: 38
67346634 AACATAGACA
67346644 TGTATGTTCGGCCACATGAATGAGTATATGAGTTGATG
1 TGTATGTTCGGCCACATGAATGAGTATATGAGTTGATG
67346682 TGTATGTTCGGCCACATGAATGAGTATATGAGTTGATG
1 TGTATGTTCGGCCACATGAATGAGTATATGAGTTGATG
67346720 TGTATGTTCGGCCA
1 TGTATGTTCGGCCA
67346734 TAGGTAGCCT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.34
Consensus pattern (38 bp):
TGTATGTTCGGCCACATGAATGAGTATATGAGTTGATG
Found at i:67347522 original size:80 final size:79
Alignment explanation
Indices: 67347377--67347538 Score: 222
Period size: 80 Copynumber: 2.0 Consensus size: 79
67347367 ATATCCGGAC
* **
67347377 TAAGATCTGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGATCTGAAGGCATTTGTGCGAGTTACTAAATCCGGGATAAGTCCCGAAGGCATTTGAACGAG
67347442 TTA-CTAAATCCGGGT
66 -TAGCTAAATCC-GGT
*
67347457 TAAG-TCTCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGATATGTCCCGAAGGCATTTGAACG
1 TAAGATCT-GAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTCCCGAAGGCATTTGAACG
*
67347520 AGTAGCTATATCCGGT
64 AGTAGCTAAATCCGGT
67347536 TAA
1 TAA
67347539 ACTCCGAAGG
Statistics
Matches: 74, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
79 11 0.15
80 61 0.82
81 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (79 bp):
TAAGATCTGAAGGCATTTGTGCGAGTTACTAAATCCGGGATAAGTCCCGAAGGCATTTGAACGAG
TAGCTAAATCCGGT
Found at i:67347529 original size:40 final size:40
Alignment explanation
Indices: 67347330--67347515 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
67347320 TCGAATGATG
* * * *
67347330 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
67347370 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
67347410 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67347450 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
67347491 -CCGGGATATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
67347516 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67349435 original size:29 final size:27
Alignment explanation
Indices: 67349401--67349503 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
67349391 TACTCGATCA
*
67349401 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
67349430 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
67349459 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
67349488 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67349504 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:67357379 original size:29 final size:27
Alignment explanation
Indices: 67357345--67357447 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
67357335 TACTCGATCA
*
67357345 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
67357374 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
67357403 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
67357432 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67357448 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:67363440 original size:27 final size:27
Alignment explanation
Indices: 67363382--67363695 Score: 179
Period size: 27 Copynumber: 11.7 Consensus size: 27
67363372 TTAGTTTACC
** * * *
67363382 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
67363409 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ****
67363436 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ****
67363463 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ***** *
67363490 GAATTACTGTTTTACCCTCGATTTAAA
1 AAATTACCAAAATACCCTCGATTTATA
* *
67363517 AAATTACTAAAATACCCTC-AGTTTACA
1 AAATTACCAAAATACCCTCGA-TTTATA
* *
67363544 AAATTACCAAAATACCCTTGA-TCAGTA
1 AAATTACCAAAATACCCTCGATTTA-TA
* * *
67363571 AAATTACCAAAATACCCTAG-TATGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * * * * *
67363597 AAATTGCTAAAATACCCTTGGTTTGTG
1 AAATTACCAAAATACCCTCGATTTATA
* ** *
67363624 AAATTACCGAAATACCCTTAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
67363651 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACCAAAATACCCTC-GATTTATA
*
67363678 AAGTTA-CAGAAATACCCT
1 AAATTACCA-AAATACCCT
67363696 TGACTTTCTA
Statistics
Matches: 235, Mismatches: 44, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
26 24 0.10
27 210 0.89
28 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:67363630 original size:80 final size:80
Alignment explanation
Indices: 67363516--67363667 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 80
67363506 CTCGATTTAA
*
67363516 AAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAATACCCTTGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAATACCCTTAATCAGTAAAATTACCAA
67363581 AATACCCTAGTATGT
66 AATACCCTAGTATGT
* ** *** * **
67363596 AAAATTGCTAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAATACCCTTAATCAGTAAAATTACCAA
67363661 AATACCC
66 AATACCC
67363668 CTGATTTACA
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAATACCCTTAATCAGTAAAATTACCAA
AATACCCTAGTATGT
Found at i:67363690 original size:54 final size:54
Alignment explanation
Indices: 67363502--67363778 Score: 188
Period size: 54 Copynumber: 5.1 Consensus size: 54
67363492 ATTACTGTTT
* * * **
67363502 TACCCTCGATTTAAAAAATTACTA-AAATACCCTCAGTTTACAAAATTACCAAAA
1 TACCCTTGATTTAACAAATTAC-AGAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
67363556 TACCCTTGA-TCAGTA-AAATTACCA-AAATACCC-TAGTATGTAAAATTGCTAAAA
1 TACCCTTGATTTA--ACAAATTA-CAGAAATACCCTTAGTTTGTAAAATTACCAAAA
* *** * *
67363609 TACCCTTGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTAACAAATTACAGAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * ***
67363663 TACCCCTGATTT-ACAAAGTTACAGAAATACCCTTGACTTTCTAAAAATTATGGAAA
1 TACCCTTGATTTAACAAA-TTACAGAAATACCCTT-AGTTTGT-AAAATTACCAAAA
* * * * * *
67363719 TACCATTGGTTTAACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTAAC-AAATTACAGAAATACCCTTAGTTTGTAAAATTACCAAAA
*
67363774 CACCC
1 TACCC
67363779 GTGTAGGATG
Statistics
Matches: 170, Mismatches: 41, Indels: 23
0.73 0.18 0.10
Matches are distributed among these distances:
52 1 0.01
53 42 0.25
54 66 0.39
55 18 0.11
56 23 0.14
57 17 0.10
58 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTTGATTTAACAAATTACAGAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:67363854 original size:27 final size:27
Alignment explanation
Indices: 67363775--67363876 Score: 73
Period size: 27 Copynumber: 3.8 Consensus size: 27
67363765 TTACCAAAAC
* * * **
67363775 ACCCGTGTAGGATGAAATGACTAAAAT
1 ACCCCTGTAGGGTAAAATGACTGTAAT
* * *
67363802 ACCCCTATTA-GGTAAAAAGACCGTAA-
1 ACCCCT-GTAGGGTAAAATGACTGTAAT
*
67363828 AGCCCCTGTAGGGTAAAGTGACTGTAAT
1 A-CCCCTGTAGGGTAAAATGACTGTAAT
* *
67363856 ATCCCTGTATGGTAAAATGAC
1 ACCCCTGTAGGGTAAAATGAC
67363877 GAATGTGCCC
Statistics
Matches: 56, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
26 3 0.05
27 50 0.89
28 3 0.05
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
ACCCCTGTAGGGTAAAATGACTGTAAT
Found at i:67364758 original size:54 final size:51
Alignment explanation
Indices: 67364675--67364812 Score: 192
Period size: 54 Copynumber: 2.7 Consensus size: 51
67364665 GAGGAAGCGC
*
67364675 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
* *
67364727 AAAAAAAGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTATCG
1 --AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
67364780 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
67364813 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 9 0.11
53 14 0.18
54 34 0.43
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:67364768 original size:25 final size:26
Alignment explanation
Indices: 67364675--67364812 Score: 176
Period size: 25 Copynumber: 5.3 Consensus size: 26
67364665 GAGGAAGCGC
*
67364675 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
67364701 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
67364727 AAAAAAAGGCTTATGCCCCAGTTTATTG
1 --AAAAGGGCTTATGCCCCAGTTTATTG
*
67364755 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
67364780 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
67364803 AAAAGAGGCT
1 AAAAG-GGCT
67364813 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
23 5 0.05
24 8 0.08
25 32 0.32
26 32 0.32
28 23 0.23
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:67365095 original size:31 final size:31
Alignment explanation
Indices: 67365018--67365130 Score: 144
Period size: 31 Copynumber: 3.7 Consensus size: 31
67365008 CGTTTACAGT
*
67365018 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
67365049 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* ** *
67365080 AAAGGCTTCAGCCCAGT-A-ACCATTAAATG-
1 AAAGGCTTCGGCCCAGTGATATGATT-TATGA
67365109 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
67365131 TCAAGACTAA
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
29 21 0.29
30 5 0.07
31 46 0.64
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:67366044 original size:37 final size:37
Alignment explanation
Indices: 67365980--67366054 Score: 93
Period size: 37 Copynumber: 2.0 Consensus size: 37
67365970 TTACAAGCCA
67365980 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
67366017 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
67366054 A
1 A
67366055 GCATCAATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
36 4 0.12
37 29 0.85
38 1 0.03
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:67372035 original size:13 final size:13
Alignment explanation
Indices: 67372017--67372041 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67372007 TCAATAATGA
67372017 CTATGGGACACGG
1 CTATGGGACACGG
67372030 CTATGGGACACG
1 CTATGGGACACG
67372042 CCTGTATGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.36, T:0.16
Consensus pattern (13 bp):
CTATGGGACACGG
Found at i:67372522 original size:37 final size:37
Alignment explanation
Indices: 67372458--67372531 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
67372448 TTACAAGCCA
67372458 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
67372495 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
67372532 GACATGATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:67376701 original size:19 final size:19
Alignment explanation
Indices: 67376672--67376723 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
67376662 CGGCCTGAGG
*
67376672 ACACAGGCGTGTCAAAGCC
1 ACACGGGCGTGTCAAAGCC
* *
67376691 ACATGGGCGTGTCAAAGGC
1 ACACGGGCGTGTCAAAGCC
*
67376710 ACACGGGCATGTCA
1 ACACGGGCGTGTCA
67376724 CCCTGTTTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.29, C:0.27, G:0.31, T:0.13
Consensus pattern (19 bp):
ACACGGGCGTGTCAAAGCC
Found at i:67385310 original size:96 final size:95
Alignment explanation
Indices: 67385146--67385335 Score: 229
Period size: 96 Copynumber: 2.0 Consensus size: 95
67385136 GTGTCTAAGG
* * * * *
67385146 AAGTCTATCATTGATGGGAACGATGGAGTAGACAAGGAGCCTAAGAAGCTTGGTTTAAGAAAGGG
1 AAGTCTATCATCGAAGGGAACGATGGAGCAGACAAGGAGCCAAAGAAGCTTGGTTCAAGAAAGGG
67385211 AAAAGCTAAAGCCAAGAGGGCAAAGAGGAGC
66 AAAAGCT-AAGCCAAGAGGGCAAAGAGGAGC
* * * * *
67385242 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACGAGGTGCCAAATAAGCTTGGTTCGAGCAAA-G
1 AAGTCTATCATCGAAGGGAACGATGGAGCAGACAAGGAGCCAAAGAAGCTTGGTTCAAG-AAAGG
* ** *
67385306 GAAAAGCTGAGGTAAGAGGGTAAAGAGGAG
65 GAAAAGCTAAGCCAAGAGGGCAAAGAGGAG
67385336 AAAAAAGAAG
Statistics
Matches: 79, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
95 18 0.23
96 58 0.73
97 3 0.04
ACGTcount: A:0.38, C:0.13, G:0.34, T:0.15
Consensus pattern (95 bp):
AAGTCTATCATCGAAGGGAACGATGGAGCAGACAAGGAGCCAAAGAAGCTTGGTTCAAGAAAGGG
AAAAGCTAAGCCAAGAGGGCAAAGAGGAGC
Found at i:67388811 original size:46 final size:46
Alignment explanation
Indices: 67388758--67388933 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67388748 TATTTAGGCA
67388758 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
67388804 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
67388851 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
67388897 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67388934 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Done.