Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 217 of 433
Found at i:67388911 original size:93 final size:93
Alignment explanation
Indices: 67388752--67388925 Score: 321
Period size: 93 Copynumber: 1.9 Consensus size: 93
67388742 CTGGGATATT
* *
67388752 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTG
67388817 AGTTGAGTCCGAGTTCGTGAGATGTAAC
66 AGTTGAGTCCGAGTTCGTGAGATGTAAC
*
67388845 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTG
67388910 AGTTGAGTCCGAGTTC
66 AGTTGAGTCCGAGTTC
67388926 ACTTATGGGC
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 78 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTG
AGTTGAGTCCGAGTTCGTGAGATGTAAC
Found at i:67394549 original size:93 final size:93
Alignment explanation
Indices: 67394437--67394608 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67394427 GCCCATAAGT
* *
67394437 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67394502 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67394530 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67394595 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67394609 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67394604 original size:46 final size:46
Alignment explanation
Indices: 67394429--67394604 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
67394419 TGTAACCCGC
* * *
67394429 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67394475 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67394525 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67394568 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67394605 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67396899 original size:24 final size:24
Alignment explanation
Indices: 67396832--67396891 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
67396822 CTCTCAGGAG
67396832 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
67396856 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
67396880 AGGATTTAGGAG
1 AGGATTTAGGAG
67396892 CAGATAAGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.28
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:67398357 original size:27 final size:26
Alignment explanation
Indices: 67398317--67398428 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
67398307 AGGAAGCGTC
*
67398317 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
67398344 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
67398371 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
67398399 CTAGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
67398425 CTGG
1 CTGG
67398429 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.71
28 15 0.21
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:67398421 original size:54 final size:54
Alignment explanation
Indices: 67398317--67398428 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
67398307 AGGAAGCGTC
* *
67398317 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
* * * *
67398371 CTGGTGGTTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGTT
67398425 CTGG
1 CTGG
67398429 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
Found at i:67399512 original size:11 final size:10
Alignment explanation
Indices: 67399484--67399517 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
67399474 AGCCTGTAAG
67399484 TATTCTGAAT
1 TATTCTGAAT
*
67399494 TTTTCTGAAT
1 TATTCTGAAT
67399504 ATATTCTGAAT
1 -TATTCTGAAT
67399515 TAT
1 TAT
67399518 CAGTCTATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:67405058 original size:40 final size:40
Alignment explanation
Indices: 67404989--67405204 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
67404979 AAACCAAGTA
* *
67404989 CCTTC-GGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
67405027 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67405067 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67405107 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
67405147 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
67405186 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67405205 TTATCATCCG
Statistics
Matches: 167, Mismatches: 6, Indels: 8
0.92 0.03 0.04
Matches are distributed among these distances:
38 6 0.04
39 43 0.26
40 118 0.71
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67411377 original size:39 final size:40
Alignment explanation
Indices: 67411277--67411467 Score: 194
Period size: 40 Copynumber: 4.8 Consensus size: 40
67411267 TCGAATGATG
* * *
67411277 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
67411317 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67411357 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
67411396 -CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
** *
67411436 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67411468 CGTTATATCC
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
38 9 0.07
39 47 0.38
40 62 0.50
41 7 0.06
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67411449 original size:40 final size:39
Alignment explanation
Indices: 67411330--67411468 Score: 156
Period size: 39 Copynumber: 3.5 Consensus size: 39
67411320 GGACTAGGAT
* * *
67411330 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTCACTAAA-CCGGGCTTAGTC
* * *
67411369 CCGAAGGCATTTGTGCAAGTTACTAAACCGGG-TTAAGTC
1 CCGAAGGCATTCGTGCGAGTCACTAAACCGGGCTT-AGTC
*
67411408 CCGAAGGCATTCGTGCGAGTCACTATAACCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTCACTA-AACCGGGCTTAGTC
* *
67411448 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
67411469 GTTATATCCG
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
37 1 0.01
38 7 0.08
39 47 0.55
40 29 0.34
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTCACTAAACCGGGCTTAGTC
Found at i:67416601 original size:40 final size:40
Alignment explanation
Indices: 67416524--67416739 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
67416514 AAACCAAGTA
* *
67416524 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
67416563 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67416603 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67416642 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
67416682 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
67416722 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67416740 TTATCATCCG
Statistics
Matches: 165, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
39 65 0.39
40 100 0.61
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67416655 original size:79 final size:78
Alignment explanation
Indices: 67416524--67416743 Score: 327
Period size: 79 Copynumber: 2.8 Consensus size: 78
67416514 AAACCAAGTA
* * *
67416524 CCTTCGGGATTTAGCCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGGACTTAGCCCGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
67416589 AACTCGCACAAATG
65 AACTCGCACAAATG
*
67416603 CCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
67416668 AACTCGCACAAATG
65 AACTCGCACAAATG
* *
67416682 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTC-GGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCC-GATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
67416744 CATCCGAATA
Statistics
Matches: 130, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 106 0.82
80 23 0.18
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
ACTCGCACAAATG
Found at i:67422173 original size:24 final size:24
Alignment explanation
Indices: 67422141--67422187 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
67422131 CTATCAGGAG
**
67422141 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
67422165 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
67422188 GGAAATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.38, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:67423635 original size:27 final size:26
Alignment explanation
Indices: 67423595--67423706 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
67423585 AGGAAGCGTC
*
67423595 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
67423622 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
67423649 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
67423677 CTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
67423703 CTGG
1 CTGG
67423707 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 51 0.70
28 15 0.21
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:67423699 original size:54 final size:54
Alignment explanation
Indices: 67423595--67423706 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
67423585 AGGAAGCGTC
* *
67423595 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATATATCTGTT
* * * *
67423649 CTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACACTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACACTGCCACATATATCTGTT
67423703 CTGG
1 CTGG
67423707 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATATATCTGTT
Found at i:67429713 original size:29 final size:27
Alignment explanation
Indices: 67429679--67429781 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
67429669 TACTCAATCA
*
67429679 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
67429708 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
67429737 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
67429766 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67429782 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:67431910 original size:78 final size:78
Alignment explanation
Indices: 67431824--67431987 Score: 199
Period size: 78 Copynumber: 2.1 Consensus size: 78
67431814 GAATTTAAAC
* * * * *
67431824 CCGG-TATAATACCAGCTCGA-AGCCTGCGAGA-CTTTAGCCCAGACATATTTCCAGCACGTAGC
1 CCGGATATAATACCAGCAC-ATAGCCTGCG-GACCCTAAGCCCAGACATAATTCCAGCACATAGC
*
67431886 CTGCGGACCTTAAGT
64 CTGCGGACCCTAAGT
* * * *
67431901 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGTCCAGATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCAGACATAATTCCAGCACATAGCCT
67431966 GCGGACCCTAAGT
66 GCGGACCCTAAGT
67431979 CCGGATATA
1 CCGGATATA
67431988 CATCACTGAA
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
77 7 0.09
78 67 0.91
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (78 bp):
CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCAGACATAATTCCAGCACATAGCCT
GCGGACCCTAAGT
Found at i:67431915 original size:39 final size:39
Alignment explanation
Indices: 67431872--67431987 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
67431862 CCAGACATAT
* *
67431872 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
* *
67431911 TTCCAGCACATAGCCTGTGGACCCTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
67431950 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
67431988 CATCACTGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:67435397 original size:30 final size:30
Alignment explanation
Indices: 67435363--67435423 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67435353 TCCTTAACTC
67435363 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
67435393 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
67435423 A
1 A
67435424 GGCTCGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:67441836 original size:46 final size:46
Alignment explanation
Indices: 67441736--67441862 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 46
67441726 TCAGGCATTT
* * *
67441736 GAACTCGTTGAGCTGCGTTCCAAGTTCACCTATGGATGCAAGCATCC
1 GAACTCGTTGAGTTGTGTTCCAAGTTCA-TTATGGATGCAAGCATCC
*
67441783 GAACTCGTTGAGTTGTGTTCCAAGTTCATTATGGATGTGAA-CA-CTC
1 GAACTCGTTGAGTTGTGTTCCAAGTTCATTATGGATG-CAAGCATC-C
* * *
67441829 GAGCTCGTTGAGTTGTGTTTCGAGTTCATTATGG
1 GAACTCGTTGAGTTGTGTTCCAAGTTCATTATGG
67441863 GTGAGATTAT
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
45 1 0.01
46 42 0.59
47 28 0.39
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (46 bp):
GAACTCGTTGAGTTGTGTTCCAAGTTCATTATGGATGCAAGCATCC
Found at i:67444139 original size:24 final size:24
Alignment explanation
Indices: 67444112--67444160 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
67444102 GATTTTGGGC
67444112 CTAGTCAGAATAGTGGTTTTGGAA
1 CTAGTCAGAATAGTGGTTTTGGAA
67444136 CTAGTCAGAATAGTGGTTTTGGAA
1 CTAGTCAGAATAGTGGTTTTGGAA
67444160 C
1 C
67444161 CACAAATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.33
Consensus pattern (24 bp):
CTAGTCAGAATAGTGGTTTTGGAA
Found at i:67449637 original size:27 final size:27
Alignment explanation
Indices: 67449607--67449668 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
67449597 ATTTACTAAA
*
67449607 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATGACCATT
* *
67449634 ATACCCCT-AGGTGCAAAGTGACCATT
1 ATACCCCTAAGATGCAAAATGACCATT
67449660 ATACCCCTA
1 ATACCCCTA
67449669 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.67
27 8 0.27
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATGACCATT
Found at i:67449873 original size:53 final size:54
Alignment explanation
Indices: 67449772--67449885 Score: 142
Period size: 53 Copynumber: 2.1 Consensus size: 54
67449762 TGGAGGAAGC
* *
67449772 GTTCTGGTGGCTATGCCACAAATATCTGTTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGTATCTAGTGACTATGCCAC-AATATCT
* * * * *
67449827 GTTCTGGT-GCTCTGCCA-TAATATCTGTATCTGGTGACTCTGTCACAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGTATCTAGTGACTATGCCACAATATCT
67449879 GTTCTGG
1 GTTCTGG
67449886 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 14 0.27
53 22 0.42
54 8 0.15
55 8 0.15
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGTATCTAGTGACTATGCCACAATATCT
Found at i:67449875 original size:27 final size:27
Alignment explanation
Indices: 67449772--67449885 Score: 135
Period size: 28 Copynumber: 4.3 Consensus size: 27
67449762 TGGAGGAAGC
67449772 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
67449799 GTTTCTAGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCACAAATATCT
* *
67449827 GTTCTGGT-GCTCTGCCA-TAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * *
67449852 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTATGCCACAAATATCT
67449879 GTTCTGG
1 GTTCTGG
67449886 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
25 9 0.12
26 19 0.25
27 23 0.30
28 26 0.34
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:67451617 original size:24 final size:24
Alignment explanation
Indices: 67451590--67451652 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
67451580 CTTATTATGT
67451590 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
67451614 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
67451638 TCGCACACATAGTGC
1 TCGCACACATAGTGC
67451653 ATTTGAGACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:67457707 original size:27 final size:25
Alignment explanation
Indices: 67457655--67457707 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 25
67457645 AAACTCTTCT
**
67457655 AAAAGAAACTCAAGAGAAATTCTTG
1 AAAAGAAACTCAAGAGAAATAATTG
*
67457680 AAAAGAAAACTCAAAGAGAAGTAATTG
1 AAAAG-AAACTC-AAGAGAAATAATTG
67457707 A
1 A
67457708 TTGCTTTGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 6 0.26
27 12 0.52
ACGTcount: A:0.57, C:0.09, G:0.17, T:0.17
Consensus pattern (25 bp):
AAAAGAAACTCAAGAGAAATAATTG
Found at i:67458741 original size:96 final size:96
Alignment explanation
Indices: 67458558--67458743 Score: 288
Period size: 96 Copynumber: 1.9 Consensus size: 96
67458548 CTTACTTTCT
*
67458558 TCTCTATTTGGATATTTAATTGGACATCGAAAACTCTTATGATCTTTTGAACTACACCAATAACA
1 TCTCTATTTGGATATTTAATTGGACATCGAAAACTCTTATGATCTTTTAAACTACACCAATAACA
*
67458623 TTGCACAATAGATGGTAGCTCAATCATCTTC
66 TTGCACAATAGATGGTAACTCAATCATCTTC
* *
67458654 TCTCTATTTGGATATTTAATTGGACATTGGAAAC-CTTTATGATCTTTTAAACTACACCAATAAC
1 TCTCTATTTGGATATTTAATTGGACATCGAAAACTC-TTATGATCTTTTAAACTACACCAATAAC
67458718 ATTGCACAA-A-ATGTGATAACTCAATC
65 ATTGCACAATAGATG-G-TAACTCAATC
67458744 GTATTCCTCC
Statistics
Matches: 83, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
94 3 0.04
95 3 0.04
96 77 0.93
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (96 bp):
TCTCTATTTGGATATTTAATTGGACATCGAAAACTCTTATGATCTTTTAAACTACACCAATAACA
TTGCACAATAGATGGTAACTCAATCATCTTC
Found at i:67462294 original size:40 final size:39
Alignment explanation
Indices: 67462249--67462456 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 39
67462239 CGGAATACAA
*
67462249 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
67462289 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
67462329 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
67462369 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
67462409 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
67462449 CCGGATAT
1 CCGGATAT
67462457 CATTCAATTG
Statistics
Matches: 144, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 1 0.01
40 143 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:67462389 original size:80 final size:80
Alignment explanation
Indices: 67462249--67462456 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 80
67462239 CGGAATACAA
* * *
67462249 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
67462314 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
67462329 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
67462393 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
67462409 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
67462457 CATTCAATTG
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:67470281 original size:40 final size:39
Alignment explanation
Indices: 67470236--67470442 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
67470226 CGGAATACAA
*
67470236 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
67470276 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
67470316 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
67470356 CCGGATGTAGTCACTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
67470395 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
67470435 CCGGATAT
1 CCGGATAT
67470443 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 35 0.24
40 108 0.76
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:67470376 original size:80 final size:80
Alignment explanation
Indices: 67470236--67470440 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 80
67470226 CGGAATACAA
* * *
67470236 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
67470300 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* *
67470316 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
67470379 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
67470395 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
67470441 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 55 0.51
80 49 0.45
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
CCTTCGGGTATTAAC
Found at i:67474741 original size:40 final size:39
Alignment explanation
Indices: 67474691--67474838 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
67474681 ATAACCATGT
67474691 GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
* *
67474730 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTC
* * **
67474770 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-C
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
* *
67474809 AGCATAATGTCTTCGGG-CTTAGCCCGGATA
1 -GCACAATGCCTTCGGGTCTTAGCCCGGATA
67474839 TCATTCAATT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
38 13 0.14
39 17 0.19
40 60 0.66
41 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
Found at i:67478709 original size:40 final size:40
Alignment explanation
Indices: 67478664--67478830 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
67478654 CGGAATATAA
*
67478664 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
67478704 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
67478744 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
67478784 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
67478823 CCGGATAT
1 CCGGATAT
67478831 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67478814 original size:80 final size:79
Alignment explanation
Indices: 67478680--67478830 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
67478670 ATAACCATGT
*
67478680 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
67478745 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
67478760 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
67478823 CCGGATAT
64 CCGGATAT
67478831 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:67486711 original size:40 final size:40
Alignment explanation
Indices: 67486666--67486832 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
67486656 CGGAATATAA
*
67486666 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
67486706 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
67486746 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
67486786 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
67486825 CCGGATAT
1 CCGGATAT
67486833 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67486816 original size:80 final size:79
Alignment explanation
Indices: 67486682--67486832 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
67486672 ATAACCATGT
*
67486682 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
67486747 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
67486762 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
67486825 CCGGATAT
64 CCGGATAT
67486833 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:67489496 original size:60 final size:60
Alignment explanation
Indices: 67489403--67489522 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
67489393 GTATACAAAC
*
67489403 CTATTAATGAATTTTTTGAAATTAGCATAATTGATAAAGTATACCTATAAGCATAAATGT
1 CTATTAATGAATGTTTTGAAATTAGCATAATTGATAAAGTATACCTATAAGCATAAATGT
67489463 CTATTAATGAATGTTTTGAAATTAGCATAATTGATAAAGTATACCTATAAGCATAAATGT
1 CTATTAATGAATGTTTTGAAATTAGCATAATTGATAAAGTATACCTATAAGCATAAATGT
67489523 GATTTTGCTA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (60 bp):
CTATTAATGAATGTTTTGAAATTAGCATAATTGATAAAGTATACCTATAAGCATAAATGT
Found at i:67489536 original size:23 final size:23
Alignment explanation
Indices: 67489507--67489552 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
67489497 TAAAGTATAC
67489507 CTATAAGCATAAATGTGATTTTG
1 CTATAAGCATAAATGTGATTTTG
67489530 CTATAAGCATAAATGTGATTTTG
1 CTATAAGCATAAATGTGATTTTG
67489553 GTAAGTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (23 bp):
CTATAAGCATAAATGTGATTTTG
Found at i:67491146 original size:23 final size:23
Alignment explanation
Indices: 67491120--67491165 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
67491110 AGGTAGAAGA
67491120 TAGGCTCAAACAGAGGTTCAAGG
1 TAGGCTCAAACAGAGGTTCAAGG
*
67491143 TAGGCTCATACAGAGGTTCAAGG
1 TAGGCTCAAACAGAGGTTCAAGG
67491166 AATGTTTAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (23 bp):
TAGGCTCAAACAGAGGTTCAAGG
Found at i:67491268 original size:18 final size:18
Alignment explanation
Indices: 67491230--67491269 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
67491220 TTAAAAGCAC
***
67491230 TTAGTTGGATAATTTGGT
1 TTAGTTGGATAATTCAAT
67491248 TTAGTTGGATAATTCAAT
1 TTAGTTGGATAATTCAAT
67491266 TTAG
1 TTAG
67491270 GAAACAACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.47
Consensus pattern (18 bp):
TTAGTTGGATAATTCAAT
Found at i:67493814 original size:39 final size:40
Alignment explanation
Indices: 67493760--67493929 Score: 222
Period size: 39 Copynumber: 4.3 Consensus size: 40
67493750 GACTAAGATT
* *
67493760 CGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-CC
1 CGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTCC
67493799 CGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAG-CC
1 CGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTCC
* *
67493838 CGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTCC
* * * *
67493878 TGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCC
1 CGAAGGCATTTGTGCGAGTTAATA-AATCC-GGGTTAAGTCC
67493918 CGAAGGCATTTG
1 CGAAGGCATTTG
67493930 AGCTAGTCGT
Statistics
Matches: 119, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 72 0.61
40 40 0.34
41 7 0.06
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGTCC
Found at i:67493952 original size:79 final size:78
Alignment explanation
Indices: 67493773--67493937 Score: 190
Period size: 79 Copynumber: 2.1 Consensus size: 78
67493763 AGGCGTTCGT
* * *
67493773 GCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGCC
1 GCGAGTCACTAAATCCGGGTTAAGCCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCC
*
67493838 CGAAGGCATTTGT
66 CGAAGGCATTTGA
* * * * *
67493851 GCGAGTTACTAAACCCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-T
1 GCGAGTCACTAAATCCGGGTTAAG-CCCGAAGGCATTCGTGCGAGTTAATA-AATCC-GGGTTAA
67493914 GTCCCGAAGGCATTTGA
63 G-CCCGAAGGCATTTGA
*
67493931 GCTAGTC
1 GCGAGTC
67493938 GTTATATCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 22 0.30
79 26 0.35
80 26 0.35
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (78 bp):
GCGAGTCACTAAATCCGGGTTAAGCCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCC
CGAAGGCATTTGA
Found at i:67497559 original size:48 final size:48
Alignment explanation
Indices: 67497488--67497579 Score: 184
Period size: 48 Copynumber: 1.9 Consensus size: 48
67497478 TTCATTTCTA
67497488 GAATAGACCAAAATATCATCGATAAACACAACTACAAACCGATCTCTC
1 GAATAGACCAAAATATCATCGATAAACACAACTACAAACCGATCTCTC
67497536 GAATAGACCAAAATATCATCGATAAACACAACTACAAACCGATC
1 GAATAGACCAAAATATCATCGATAAACACAACTACAAACCGATC
67497580 CAAATACGGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.48, C:0.26, G:0.09, T:0.17
Consensus pattern (48 bp):
GAATAGACCAAAATATCATCGATAAACACAACTACAAACCGATCTCTC
Found at i:67501592 original size:40 final size:40
Alignment explanation
Indices: 67501538--67501695 Score: 244
Period size: 40 Copynumber: 4.0 Consensus size: 40
67501528 CGGATGTAAC
* *
67501538 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
**
67501578 AACCCGCACGAATGCCTTCGGGACTTAACCCTATTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
67501618 AACCCACACGAATGCTTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
67501658 AGCCCGCACGAATGCCTTCGGGACTTAACTCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
67501696 TTTTTTTCCA
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:67506054 original size:40 final size:40
Alignment explanation
Indices: 67505927--67506056 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
67505917 ATGCTGGAAA
* * *
67505927 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
67505967 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
67506007 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
67506047 TTATATCCGG
1 TTATATCCGG
67506057 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:67514088 original size:40 final size:40
Alignment explanation
Indices: 67513961--67514090 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
67513951 ATGCTGGAAA
* *
67513961 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
67514001 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
67514041 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
67514081 TTATATCCGG
1 TTATATCCGG
67514091 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:67519249 original size:39 final size:39
Alignment explanation
Indices: 67519202--67519383 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
67519192 AATGTTCGAG
67519202 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
67519241 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
67519280 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
67519319 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * * *
67519359 CCATAACCGGGCTATGTCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGC
67519384 GTTTGAACGA
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
39 96 0.77
40 28 0.23
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:67523309 original size:20 final size:21
Alignment explanation
Indices: 67523286--67523331 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
67523276 AACTCCAACC
67523286 AGCTCACTTGAGCTCG-TTTT
1 AGCTCACTTGAGCTCGATTTT
* * *
67523306 AGCTCATTTGAGTTTGATTTT
1 AGCTCACTTGAGCTCGATTTT
67523327 AGCTC
1 AGCTC
67523332 GTTTCAGCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.43
Consensus pattern (21 bp):
AGCTCACTTGAGCTCGATTTT
Found at i:67525655 original size:21 final size:21
Alignment explanation
Indices: 67525631--67525672 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
67525621 TACAATGAAA
67525631 AATTTGATTCGTAGTGAAGAG
1 AATTTGATTCGTAGTGAAGAG
67525652 AATTTGATTCGTAGTGAAGAG
1 AATTTGATTCGTAGTGAAGAG
67525673 TGGTCAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (21 bp):
AATTTGATTCGTAGTGAAGAG
Found at i:67526040 original size:49 final size:49
Alignment explanation
Indices: 67525982--67526123 Score: 266
Period size: 49 Copynumber: 2.9 Consensus size: 49
67525972 GTATGAGATG
*
67525982 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
67526031 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
67526080 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
67526124 TATATGTGTG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 91 1.00
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:67526172 original size:48 final size:48
Alignment explanation
Indices: 67526115--67526218 Score: 181
Period size: 48 Copynumber: 2.2 Consensus size: 48
67526105 CAATGTGATG
*
67526115 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGCATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
67526163 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGTCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
67526211 AATGTGAA
1 AATGTGAA
67526219 TGTTGTAACA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.34
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:67526312 original size:37 final size:37
Alignment explanation
Indices: 67526258--67526348 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
67526248 AACTTGGAAA
*
67526258 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
67526296 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
67526333 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
67526349 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:67529400 original size:20 final size:20
Alignment explanation
Indices: 67529375--67529447 Score: 56
Period size: 20 Copynumber: 3.3 Consensus size: 20
67529365 CATAAGTGAA
67529375 CTCGGACTCAACTCAACGAG
1 CTCGGACTCAACTCAACGAG
* * *
67529395 CTCGGATGCCTAATTACATCTCACGAA
1 CTCGGA---CTCA--AC-TC-AACGAG
67529422 CTCGGACTCAACTCAACGAG
1 CTCGGACTCAACTCAACGAG
67529442 CTCGGA
1 CTCGGA
67529448 TGCCTAGTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
20 16 0.40
21 2 0.05
22 2 0.05
23 3 0.08
24 3 0.08
25 2 0.05
26 2 0.05
27 10 0.25
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (20 bp):
CTCGGACTCAACTCAACGAG
Found at i:67529425 original size:27 final size:27
Alignment explanation
Indices: 67529390--67529472 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
67529380 ACTCAACTCA
*
67529390 ACGAGCTCGGATGCCTAATTACATCTC
1 ACGAACTCGGATGCCTAATTACATCTC
* *
67529417 ACGAACTCGGA---CTCA--AC-TC-A
1 ACGAACTCGGATGCCTAATTACATCTC
* *
67529437 ACGAGCTCGGATGCCTAGTTACATCTC
1 ACGAACTCGGATGCCTAATTACATCTC
67529464 ACGAACTCG
1 ACGAACTCG
67529473 AACTCAACTC
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
20 10 0.24
21 2 0.05
22 2 0.05
23 2 0.05
24 3 0.07
25 2 0.05
26 2 0.05
27 18 0.44
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (27 bp):
ACGAACTCGGATGCCTAATTACATCTC
Found at i:67529439 original size:47 final size:47
Alignment explanation
Indices: 67529372--67529488 Score: 216
Period size: 47 Copynumber: 2.5 Consensus size: 47
67529362 ATCCATAAGT
67529372 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCAC
*
67529419 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCAC
*
67529466 GAACTCGAACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
67529489 TTCAGGATTC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.20
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCAC
Found at i:67532321 original size:71 final size:71
Alignment explanation
Indices: 67532187--67532316 Score: 187
Period size: 71 Copynumber: 1.9 Consensus size: 71
67532177 AGCCAATTTA
* *
67532187 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACATT
67532252 TATCTC
66 TATCTC
* *
67532258 TCTCGTAGCTCTCTTGTCTACATGG-GATACATC-C-T-GTATCACACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTTGGAATCACACATGCGACCTAGCTAC
67532317 TACATAGTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
68 22 0.41
69 1 0.02
70 2 0.04
71 29 0.54
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (71 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACATT
TATCTC
Found at i:67532338 original size:68 final size:71
Alignment explanation
Indices: 67532185--67532349 Score: 187
Period size: 68 Copynumber: 2.4 Consensus size: 71
67532175 CTAGCCAATT
* *
67532185 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACA
**
67532250 TTTATC
66 CATATC
* * *
67532256 TCTCTCGTAGCTCTCTTGTCTACATGG-GATACATC-C-T-GTATCACACATGTGACCTAGCTAC
1 TATCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTTGGAATCACACATGCGACCTAGCTAC
*
67532317 TACATA-G
65 -ACATATC
* *
67532324 TATCTCGTATCTCTCTTGTATACATG
1 TATCTCGTAGCTCTCTTGTCTACATG
67532350 ATGTGCACTT
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
68 45 0.56
69 4 0.05
70 2 0.02
71 30 0.37
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (71 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACA
CATATC
Found at i:67537428 original size:19 final size:19
Alignment explanation
Indices: 67537400--67537437 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
67537390 ATGACTTGCT
67537400 TATCGACATCTTTCTGGCA
1 TATCGACATCTTTCTGGCA
*
67537419 TATCGGCATCTTTCTGGCA
1 TATCGACATCTTTCTGGCA
67537438 GCTCGAGCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.37
Consensus pattern (19 bp):
TATCGACATCTTTCTGGCA
Found at i:67542921 original size:21 final size:22
Alignment explanation
Indices: 67542878--67542922 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
67542868 CAATTAAGAG
** *
67542878 AAAAGAAAAGAATGGATGTGAA
1 AAAAGAAAAGAATAAATGAGAA
67542900 AAAAGAAAAGAA-AAATGAGAA
1 AAAAGAAAAGAATAAATGAGAA
67542921 AA
1 AA
67542923 GGAACGCAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.69, C:0.00, G:0.22, T:0.09
Consensus pattern (22 bp):
AAAAGAAAAGAATAAATGAGAA
Found at i:67545322 original size:39 final size:40
Alignment explanation
Indices: 67545212--67545355 Score: 254
Period size: 40 Copynumber: 3.6 Consensus size: 40
67545202 CACGTCCAAT
* * *
67545212 TGCCTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
67545252 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
67545292 TGCCTTCGGGTCTTA-CCCGGATATAACAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
67545331 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
67545356 CATTCAAATG
Statistics
Matches: 100, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
39 39 0.39
40 61 0.61
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAA
Found at i:67553207 original size:40 final size:40
Alignment explanation
Indices: 67553127--67553306 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
67553117 ACCCAAGTTT
* * * *
67553127 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
67553166 CTTCGGGTCTTAACCCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
67553206 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
67553246 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
67553286 CTTCGGG-CTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
67553307 CATTCAAATG
Statistics
Matches: 129, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 24 0.19
40 104 0.81
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:67562319 original size:29 final size:29
Alignment explanation
Indices: 67562286--67562417 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
67562276 GTGACGAGAT
*
67562286 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
67562315 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
67562344 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
67562373 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
67562402 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
67562418 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:67570163 original size:29 final size:29
Alignment explanation
Indices: 67570099--67570229 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
67570089 GTGACGAGAT
*
67570099 TGGCACTAAGTGTGCGTGCTGG-AATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
67570127 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
67570156 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
67570185 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
67570214 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
67570230 AGCTCGAAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 22 0.24
29 68 0.76
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:67573476 original size:19 final size:19
Alignment explanation
Indices: 67573452--67573488 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67573442 TTTGCGTTCT
67573452 TATATTTCAGCATATTTTA
1 TATATTTCAGCATATTTTA
* *
67573471 TATATTTTAGCTTATTTT
1 TATATTTCAGCATATTTT
67573489 GAATCATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.59
Consensus pattern (19 bp):
TATATTTCAGCATATTTTA
Found at i:67579239 original size:6 final size:6
Alignment explanation
Indices: 67579221--67579317 Score: 90
Period size: 6 Copynumber: 15.8 Consensus size: 6
67579211 AAGAAACATT
* *
67579221 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
67579270 ATCAGA ATCAGT ATCAGA TAACAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAGA -ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
67579318 GTAACAGAAT
Statistics
Matches: 74, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
5 2 0.03
6 63 0.85
7 8 0.11
8 1 0.01
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:67579268 original size:31 final size:31
Alignment explanation
Indices: 67579230--67579327 Score: 151
Period size: 31 Copynumber: 3.2 Consensus size: 31
67579220 TATCAGAACT
* * *
67579230 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
*
67579261 AGAATCAGAATCAGAATCAGTATCAGATAAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
*
67579292 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGTATCAGGTAAC
67579323 AGAAT
1 AGAAT
67579328 TAAAAATCAG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGTATCAGGTAAC
Found at i:67579294 original size:25 final size:24
Alignment explanation
Indices: 67579233--67579317 Score: 91
Period size: 25 Copynumber: 3.5 Consensus size: 24
67579223 CAGAACTAGA
*
67579233 ATCAGAATCAGAATCAGAATTAGGT
1 ATCAGAATCAGAATCAGAATCA-GT
67579258 GA-CAGAATCAGAATCAGAATCAGT
1 -ATCAGAATCAGAATCAGAATCAGT
* * *
67579282 ATCAGATAACAGAATCAAAATCAGA
1 ATCAGA-ATCAGAATCAGAATCAGT
*
67579307 ATCAGTATCAG
1 ATCAGAATCAG
67579318 GTAACAGAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 10 0.20
25 39 0.76
26 1 0.02
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (24 bp):
ATCAGAATCAGAATCAGAATCAGT
Found at i:67579512 original size:27 final size:27
Alignment explanation
Indices: 67579470--67579578 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 27
67579460 CATTGCTGCT
* *
67579470 CAGATATCAGATATTGTGACAGAGTCAC
1 CAGATA-CAGATATTGTGGCAGAGCCAC
*
67579498 CAGATACAAATATTGTGGCAGAGCCAC
1 CAGATACAGATATTGTGGCAGAGCCAC
*
67579525 CAGA-ACAGATATTAGTGGCATAGCCAC
1 CAGATACAGATATT-GTGGCAGAGCCAC
* * *
67579552 CAGAAACAGATAATGTGGCAAAGCCAC
1 CAGATACAGATATTGTGGCAGAGCCAC
67579579 TTAACAGAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 8 0.11
27 50 0.69
28 14 0.19
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (27 bp):
CAGATACAGATATTGTGGCAGAGCCAC
Found at i:67579765 original size:22 final size:21
Alignment explanation
Indices: 67579737--67579801 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
67579727 GCAAATACGT
*
67579737 TTGGCACACAGCCATCATCAGG
1 TTGGCACAAAGCCAT-ATCAGG
* *
67579759 TTGGCACAGAGCCATATGTAGG
1 TTGGCACAAAGCCATAT-CAGG
*
67579781 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCAT-ATCAG
67579802 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.20
Consensus pattern (21 bp):
TTGGCACAAAGCCATATCAGG
Found at i:67580266 original size:26 final size:27
Alignment explanation
Indices: 67580228--67580468 Score: 295
Period size: 27 Copynumber: 9.0 Consensus size: 27
67580218 GGGTCAAAAT
* * * *
67580228 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67580254 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67580281 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
67580308 GGTAATTCTACCCTATAAGGGTGTTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
67580335 GATAATTTTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
67580362 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67580389 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67580416 AGTAATTCTACCCTACAGGGCTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67580443 GGCAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
67580469 TGATATTTTA
Statistics
Matches: 181, Mismatches: 33, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
26 14 0.08
27 167 0.92
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:67580511 original size:27 final size:27
Alignment explanation
Indices: 67580461--67580639 Score: 216
Period size: 27 Copynumber: 6.7 Consensus size: 27
67580451 TACCCTACAG
* *
67580461 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
* * *
67580487 GAGTATTTTGATAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
* *
67580514 GGGTATTTTGGTAATTTTACAAGTCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
* *
67580541 GGGTATTTTGGTAATTTTAAAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
* * * *
67580568 GGGTATATTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
* *
67580595 GGGTATTTTGGTAATTTTACTAATCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
67580622 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
67580640 GTAAACTAAG
Statistics
Matches: 130, Mismatches: 22, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 11 0.08
27 119 0.92
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAA
Found at i:67580664 original size:81 final size:81
Alignment explanation
Indices: 67580497--67580666 Score: 211
Period size: 81 Copynumber: 2.1 Consensus size: 81
67580487 GAGTATTTTG
* *
67580497 ATAATTTCACAAATCAAGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTGGTAATTTTAAA
1 ATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTGGTAATTTTAAA
*
67580562 AACCAAGGGTATATTA
66 AACCAAGGGTATATCA
* * *
67580578 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAA-TC-GAGGGTATTTTGGTAATTTTG
1 ATAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC-AAGTCAG-GGGTATTTTGGTAATTTTA
* * *
67580641 TAAACTAAGGGTGT-TACA
64 AAAACCAAGGGTATAT-CA
67580659 ATAATTTT
1 ATAATTTT
67580667 GTAAATCGAG
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
80 2 0.03
81 72 0.95
82 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.39
Consensus pattern (81 bp):
ATAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAGTCAGGGGTATTTTGGTAATTTTAAA
AACCAAGGGTATATCA
Found at i:67580690 original size:27 final size:27
Alignment explanation
Indices: 67580660--67580962 Score: 430
Period size: 27 Copynumber: 11.3 Consensus size: 27
67580650 GGTGTTACAA
* * *
67580660 TAATTTTGTAAATCGAGGATAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67580687 TAATTCTATAAATCGAGGGTAAATA--G
1 TAATTCTGTAAATCGAGGGTAAA-ACGG
* * *
67580713 TAATTCTATAAATCAAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
67580740 TAATTTTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67580767 TAATTCTGTAAATTGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67580794 TATTTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
67580821 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67580848 TAATTCTGTAAATTGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67580875 TAATTCTGTAAATCGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* * *
67580902 TAATTTTGTAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
67580929 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
67580956 TAATTCT
1 TAATTCT
67580963 ATCTTATTTT
Statistics
Matches: 251, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
25 1 0.00
26 23 0.09
27 226 0.90
28 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGG
Found at i:67583030 original size:6 final size:6
Alignment explanation
Indices: 67583012--67583108 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
67583002 AAGAAACATT
* *
67583012 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
67583061 ATCAGA ATCAGT ATCAGGTA A-CAGA ATAAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
67583109 GTAAAAGAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.06
6 60 0.83
7 6 0.08
8 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:67583057 original size:31 final size:31
Alignment explanation
Indices: 67583021--67583131 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
67583011 TATCAGAACT
* * * *
67583021 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
67583052 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
67583083 AGAATAAAAATCAGAATCAGTATCAGGTAAA
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
67583114 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
67583132 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 61 0.85
32 11 0.15
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:67583535 original size:22 final size:22
Alignment explanation
Indices: 67583501--67583565 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
67583491 GCAAATACGT
*
67583501 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
67583523 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
67583545 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
67583566 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:67584046 original size:27 final size:27
Alignment explanation
Indices: 67583990--67584203 Score: 290
Period size: 27 Copynumber: 8.0 Consensus size: 27
67583980 GGGGCAAAAT
* * * *
67583990 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67584016 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67584043 GGTAATTCTACCCTACA-GGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67584069 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67584096 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67584123 GGTAATTCTACCCTACCGGGG-ATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67584149 AGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
67584176 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
67584203 G
1 G
67584204 ATATTTTCAA
Statistics
Matches: 163, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
26 60 0.37
27 103 0.63
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:67584047 original size:53 final size:54
Alignment explanation
Indices: 67583990--67584203 Score: 283
Period size: 53 Copynumber: 4.0 Consensus size: 54
67583980 GGGGCAAAAT
* * * *
67583990 GGTAATTTTACCCCACA-AGGTA-TCTCGGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTC-CGGTAATTCTACCCTACAGGGGTATTTC
* * *
67584043 GGTAATTCTACCCTACA-GGGTATTGCGATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
67584096 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACCGGGG-ATTTT
1 GGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTC
*
67584149 AGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTC
67584203 G
1 G
67584204 ATATTTTCAA
Statistics
Matches: 139, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
53 108 0.78
54 31 0.22
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:67584124 original size:80 final size:80
Alignment explanation
Indices: 67583991--67584203 Score: 295
Period size: 80 Copynumber: 2.7 Consensus size: 80
67583981 GGGCAAAATG
* * * * *
67583991 GTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
*
67584055 CTACAGGGTATTGCGA
66 CTACAGGGGATT-CGA
* *
67584071 -TAATTCTACCCTATAGGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
* **
67584135 CTACCGGGGATTTTA
66 CTACAGGGGATTCGA
*
67584150 GTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCG
67584204 ATATTTTCAA
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 13 0.11
80 104 0.89
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (80 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
CTACAGGGGATTCGA
Found at i:67584251 original size:27 final size:27
Alignment explanation
Indices: 67584191--67584371 Score: 156
Period size: 27 Copynumber: 6.8 Consensus size: 27
67584181 TTCTACCCTA
*
67584191 CAGGGGTATTTCGAT-ATTTT-CAAAT
1 CAGGGGTATTTTGATAATTTTACAAAT
* *
67584216 C-GAGAGTATTTTGATAATTTCACAAAT
1 CAG-GGGTATTTTGATAATTTTACAAAT
* *
67584243 CAGGGGTATTTTGGTAATTTTACAAGT
1 CAGGGGTATTTTGATAATTTTACAAAT
* * * * *
67584270 CAAGGATATTTTGGTAATTTTAGAAAC
1 CAGGGGTATTTTGATAATTTTACAAAT
*
67584297 CAGGGGTATTTT-AGTAATTTTACAAAC
1 CAGGGGTATTTTGA-TAATTTTACAAAT
* ***
67584324 CAGGGGTATTTTGGTAATTTTATTGAT
1 CAGGGGTATTTTGATAATTTTACAAAT
*
67584351 C-GAGGGTATTTTGGTAATTTT
1 CAG-GGGTATTTTGATAATTTT
67584372 GTAAACTAAG
Statistics
Matches: 128, Mismatches: 21, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
24 1 0.01
25 11 0.09
26 5 0.04
27 110 0.86
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGATAATTTTACAAAT
Found at i:67584288 original size:54 final size:54
Alignment explanation
Indices: 67584222--67584371 Score: 176
Period size: 54 Copynumber: 2.8 Consensus size: 54
67584212 AAATCGAGAG
* * **
67584222 TATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGTCAAGGA
1 TATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGA
* * * * *
67584276 TATTTTGGTAATTTTAGAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGA
***
67584330 TATTTTGGTAATTTTATTGATC-GAGGGTATTTTGGTAATTTT
1 TATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTT
67584372 GTAAACTAAG
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 1 0.01
54 80 0.99
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (54 bp):
TATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGA
Found at i:67584328 original size:81 final size:81
Alignment explanation
Indices: 67584221--67584398 Score: 218
Period size: 81 Copynumber: 2.2 Consensus size: 81
67584211 CAAATCGAGA
* *
67584221 GTATTTT-GATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAG-TCAAGGATATTTTGG
1 GTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTA-AAGATCAAGGATATTTTGG
*
67584284 TAATTTTAG-AAACCAGGG
64 TAATTTT-GTAAACCAAGG
** * *
67584302 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTA
1 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAAAGATCAAGGATATTTTGGTA
*
67584367 ATTTTGTAAACTAAGG
66 ATTTTGTAAACCAAGG
* *
67584383 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
67584399 GTAAATCGAG
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
80 2 0.02
81 81 0.96
82 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (81 bp):
GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAAAGATCAAGGATATTTTGGTA
ATTTTGTAAACCAAGG
Found at i:67584383 original size:27 final size:27
Alignment explanation
Indices: 67584246--67584403 Score: 108
Period size: 27 Copynumber: 5.9 Consensus size: 27
67584236 CACAAATCAG
*
67584246 GGGTATTTTGGTAA-TTT-TACAAGTCAA
1 GGGTATTTTGGTAATTTTGTA-AACT-AA
* * *
67584273 GGATATTTTGGTAATTTTAG-AAACCAG
1 GGGTATTTTGGTAATTTT-GTAAACTAA
* ** * *
67584300 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTGTAAACTAA
* ** *
67584327 GGGTATTTTGGTAATTTTATTGA-TCGA
1 GGGTATTTTGGTAATTTTGTAAACT-AA
67584354 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTGTAAACTAA
***
67584381 GGGTATTTCAATAATTTTGTAAA
1 GGGTATTTTGGTAATTTTGTAAA
67584404 TCGAGGATAA
Statistics
Matches: 104, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
27 97 0.93
28 6 0.06
29 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGTAAACTAA
Found at i:67584385 original size:54 final size:53
Alignment explanation
Indices: 67584221--67584388 Score: 153
Period size: 54 Copynumber: 3.1 Consensus size: 53
67584211 CAAATCGAGA
* * * * *
67584221 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAA-TTTTACAAGTCAAGG
1 GTATTTTGGTAATTTTAGAAACCAGGGGTATTTTGGTAATTTTTA-AACT-AAGG
* * * * *
67584275 ATATTTTGGTAATTTTAGAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTAGAAACCAGGGGTATTTTGGTAATTTT-TAAACTAAGG
* *
67584329 GTATTTTGGTAATTTTATTG-ATCGA-GGGTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTGGTAATTTTA--GAAACCAGGGGTATTTTGGTAATTTT-TAAACTAAGG
67584383 GTATTT
1 GTATTT
67584389 CAATAATTTT
Statistics
Matches: 92, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
54 82 0.89
55 8 0.09
56 2 0.02
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (53 bp):
GTATTTTGGTAATTTTAGAAACCAGGGGTATTTTGGTAATTTTTAAACTAAGG
Found at i:67584422 original size:27 final size:27
Alignment explanation
Indices: 67584400--67584616 Score: 308
Period size: 27 Copynumber: 8.0 Consensus size: 27
67584390 AATAATTTTG
* * *
67584400 TAAATCGAGGATAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
67584427 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
67584454 TAAATCAAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* * *
67584481 TAAATTGAGGGTAAAACGATAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
67584508 TAAATCGAGGGTAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* * *
67584535 TAAATTGAGGGTAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
67584562 TAAATCGAGGGTAAAACTGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
67584589 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
67584616 T
1 T
67584617 CTTATTTCAG
Statistics
Matches: 169, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 169 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:67584448 original size:81 final size:80
Alignment explanation
Indices: 67584363--67584616 Score: 296
Period size: 81 Copynumber: 3.1 Consensus size: 80
67584353 AGGGTATTTT
* * ** * * *
67584363 GGTAATTTTGTAAACTAAGGGTATTTCAATAATTTTGTAAATCGAGGATAAAATGGTAATTCTGT
1 GGTAATTCTATAAA-TAAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGT
67584428 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
* * * * *
67584444 GGTAATTCTATAAATCAAGGGTAAAAT-GGTAATTCTATAAATTGAGGGTAAAACGATAATTCTG
1 GGTAATTCTATAAAT-AAGGGT-AAATCAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTG
67584508 TAAATCGAGGGTAAAAC
64 TAAATCGAGGGTAAAAC
* * * *
67584525 AGTAATTCTATAAATTGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACT-GTAATTCTA
1 GGTAATTCTATAAA-TAAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAA-TGGTAATTCTG
*
67584589 TAAATCGAGGGTAAAAT
64 TAAATCGAGGGTAAAAC
67584606 GGTAATTCTAT
1 GGTAATTCTAT
67584617 CTTATTTCAG
Statistics
Matches: 145, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
80 4 0.03
81 138 0.95
82 3 0.02
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.31
Consensus pattern (80 bp):
GGTAATTCTATAAATAAGGGTAAATCAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTA
AATCGAGGGTAAAAC
Found at i:67584659 original size:27 final size:27
Alignment explanation
Indices: 67584629--67584691 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
67584619 TATTTCAGTG
67584629 ATTTTACAAATCGAGGATA-TTTGGGTA
1 ATTTTACAAATCGAGGATACTTT-GGTA
* * *
67584656 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATCGAGGATACTTTGGTA
67584683 ATTTTACAA
1 ATTTTACAA
67584692 GTTGGGGGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
ATTTTACAAATCGAGGATACTTTGGTA
Found at i:67584710 original size:27 final size:27
Alignment explanation
Indices: 67584622--67584713 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
67584612 TCTATCTTAT
* * * *
67584622 TTCAGTGATTTTACAAATCGAGGATAT
1 TTCAGTAATTTTACAAATCGGGGGTAC
** *
67584649 TTGGGTAATTTTATAAATCGGGGGTAC
1 TTCAGTAATTTTACAAATCGGGGGTAC
** * * *
67584676 TTTGGTAATTTTACAAGTTGGGGGTAG
1 TTCAGTAATTTTACAAATCGGGGGTAC
67584703 TTCAGTAATTT
1 TTCAGTAATTT
67584714 GGTAAACTAA
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.27, C:0.08, G:0.25, T:0.40
Consensus pattern (27 bp):
TTCAGTAATTTTACAAATCGGGGGTAC
Found at i:67591224 original size:152 final size:155
Alignment explanation
Indices: 67590947--67591252 Score: 564
Period size: 152 Copynumber: 2.0 Consensus size: 155
67590937 TATCACACAC
67590947 ACATAAATAACATAACATATGATAAAAAACAAAAACTTAAAAATGACACAAACTTATGCTTAAAC
1 ACATAAATAACATAACATATGATAAAAAACAAAAACTTAAAAATGACACAAACTTATGCTTAAAC
*
67591012 ATAGTTAGCATATGAAAACACATGATAAAAATCTATGGGATAACTTAAATTCAACTTATTAAATT
66 A-AG-TAGCATATGAAAACACATGATAAAAATCTATGGGATAACTTAAATGCAACTTATTAAATT
67591077 GAACATAAAACTTAATACAAAGTCATA
129 GAACATAAAACTTAATACAAAGTCATA
67591104 ACATAAATAACATAACATATGAT-AAAAACAAAAACTTAAAAATGACACAAACTTATGCTTAAAC
1 ACATAAATAACATAACATATGATAAAAAACAAAAACTTAAAAATGACACAAACTTATGCTTAAAC
67591168 -A-TAGCATATGAAAACACATGATAAAAATCTATGGGATAACTTAAATGCAACTTATTAAATTGA
66 AAGTAGCATATGAAAACACATGATAAAAATCTATGGGATAACTTAAATGCAACTTATTAAATTGA
67591231 ACATAAAACTTAATACAAAGTC
131 ACATAAAACTTAATACAAAGTC
67591253 TTGAAATCAC
Statistics
Matches: 148, Mismatches: 1, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
152 83 0.56
154 1 0.01
156 41 0.28
157 23 0.16
ACGTcount: A:0.53, C:0.14, G:0.08, T:0.25
Consensus pattern (155 bp):
ACATAAATAACATAACATATGATAAAAAACAAAAACTTAAAAATGACACAAACTTATGCTTAAAC
AAGTAGCATATGAAAACACATGATAAAAATCTATGGGATAACTTAAATGCAACTTATTAAATTGA
ACATAAAACTTAATACAAAGTCATA
Found at i:67598986 original size:34 final size:34
Alignment explanation
Indices: 67598943--67599011 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
67598933 ATTGGCTTAA
67598943 TAGGTTTAATGTTAATAAAATGAGGTTTCAAAAT
1 TAGGTTTAATGTTAATAAAATGAGGTTTCAAAAT
67598977 TAGGTTTAATGTTAATAAAATGAGGTTTCAAAAT
1 TAGGTTTAATGTTAATAAAATGAGGTTTCAAAAT
67599011 T
1 T
67599012 GGCTAAGTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.41, C:0.03, G:0.17, T:0.39
Consensus pattern (34 bp):
TAGGTTTAATGTTAATAAAATGAGGTTTCAAAAT
Found at i:67603293 original size:15 final size:15
Alignment explanation
Indices: 67603277--67603311 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
67603267 ATCAAACTTT
67603277 TTTTTC-CATT-TTC
1 TTTTTCTCATTCTTC
67603290 TTTTTCTCATTCTTC
1 TTTTTCTCATTCTTC
67603305 TTTTTCT
1 TTTTTCT
67603312 TTTTTCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 6 0.30
14 4 0.20
15 10 0.50
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTCTCATTCTTC
Found at i:67603324 original size:22 final size:21
Alignment explanation
Indices: 67603285--67603333 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
67603275 TTTTTTTCCA
67603285 TTTTCTTTTTCTCATTCTTCT
1 TTTTCTTTTTCTCATTCTTCT
67603306 TTTTCTTTTT-TCATT-TTCT
1 TTTTCTTTTTCTCATTCTTCT
67603325 TTTCTCTTT
1 TTT-TCTTT
67603334 CATTTGCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.26
20 10 0.37
21 10 0.37
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTCTTTTTCTCATTCTTCT
Found at i:67603388 original size:43 final size:42
Alignment explanation
Indices: 67603308--67603389 Score: 112
Period size: 45 Copynumber: 1.9 Consensus size: 42
67603298 ATTCTTCTTT
*
67603308 TTCTTTTTTCATTTTCTTTTCTCTTTCATTTGCTATTTTTGTG
1 TTCTTTTTTCATTTTCATTTCTCTTTCATTT-CTATTTTTGTG
*
67603351 TTCTTTTTCTCATTTCTCATTTCTTTTTCATTT-TATTTT
1 TTCTTTTT-TCATTT-TCATTTCTCTTTCATTTCTATTTT
67603390 CTTTCTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
43 14 0.40
44 6 0.17
45 15 0.43
ACGTcount: A:0.09, C:0.17, G:0.04, T:0.71
Consensus pattern (42 bp):
TTCTTTTTTCATTTTCATTTCTCTTTCATTTCTATTTTTGTG
Found at i:67605072 original size:27 final size:27
Alignment explanation
Indices: 67605064--67605357 Score: 446
Period size: 27 Copynumber: 10.9 Consensus size: 27
67605054 AAAATTAACG
* * *
67605064 TTTTACCCTTGATTTAAAGAATTACCG
1 TTTTACCCTCGATTTACAGAATTACCA
67605091 TTTTACCCTCGATTTACAGAATTACCA
1 TTTTACCCTCGATTTACAGAATTACCA
*
67605118 TTTTACCAT-GATTTACAGAATTACCA
1 TTTTACCCTCGATTTACAGAATTACCA
*
67605144 TTTTACCCTCGATTTATAGAATTACCA
1 TTTTACCCTCGATTTACAGAATTACCA
*
67605171 TTTTACCCTCGATTTACAAAATTACCA
1 TTTTACCCTCGATTTACAGAATTACCA
67605198 TTTTACCCTCGATTTACAGAATTACCA
1 TTTTACCCTCGATTTACAGAATTACCA
** *
67605225 TTTTACTTTCGATTTATAGAATTACCA
1 TTTTACCCTCGATTTACAGAATTACCA
* * *
67605252 TTTTACCCTCGATTTATAGAATTAACG
1 TTTTACCCTCGATTTACAGAATTACCA
* *
67605279 TTTTACCCTTGATTTATAGAATTACCA
1 TTTTACCCTCGATTTACAGAATTACCA
67605306 TTTTACCCTCGATTTACAGAATTACCA
1 TTTTACCCTCGATTTACAGAATTACCA
*
67605333 TTTTACCCTCGATTTACAAAATTAC
1 TTTTACCCTCGATTTACAGAATTAC
67605358 TAAAATACCC
Statistics
Matches: 244, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 25 0.10
27 219 0.90
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAGAATTACCA
Found at i:67605366 original size:27 final size:27
Alignment explanation
Indices: 67605094--67605502 Score: 173
Period size: 27 Copynumber: 15.2 Consensus size: 27
67605084 ATTACCGTTT
* ***
67605094 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ***
67605121 TACCAT-GATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ***
67605147 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
***
67605174 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ***
67605201 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
** * * ***
67605228 TACTTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ****
67605255 TACCCTCGATTTATAGAATTAACGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
67605282 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* ***
67605309 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
67605336 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
67605363 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * *
67605390 TACCGTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* * * ** *
67605417 AATCGCT-GGTTTGTAAAATTACTAAAA
1 TA-CCCTCGATTTACAAAATTACCAAAA
* **
67605444 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
* *
67605471 TACCCCTAGCTTGT--AAAATTACCAAAA
1 TA-CCCTCGATT-TACAAAATTACCAAAA
67605498 TACCC
1 TACCC
67605503 CTGACTTGTG
Statistics
Matches: 330, Mismatches: 43, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
26 32 0.10
27 288 0.87
28 9 0.03
29 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:67605408 original size:54 final size:53
Alignment explanation
Indices: 67605350--67605558 Score: 172
Period size: 54 Copynumber: 3.9 Consensus size: 53
67605340 CTCGATTTAC
* ** *
67605350 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCGTCGATCAGT
1 AAAATTACCAAAATACCC-TGGTTTGTAAAATTACCAAAATACCCCT-GATCAGT
* * * * **
67605404 AAAATTACCAAAAAATCGCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGT
* * *
67605458 AAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAAAATACCCCTGA-CTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCCTGATC-AGT
* * * * * *
67605512 GAAATTATCAAAATACTCTCGATTTGTAAAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCT-GGTTTGTAAAATTACCAAAATACCCCTG
67605559 TAGGGTAGAA
Statistics
Matches: 125, Mismatches: 26, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
53 17 0.14
54 103 0.82
55 5 0.04
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGT
Found at i:67605503 original size:27 final size:27
Alignment explanation
Indices: 67605350--67605527 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
67605340 CTCGATTTAC
* * * **
67605350 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGCTTGT
* * * *
67605377 AAAATTACCAAAATA-CCGTCGATCAGT
1 AAAATTACCAAAATACCCCTGGCT-TGT
* * * *
67605404 AAAATTACCAAAAAATCGCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGCTTGT
* *
67605431 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGCTTGT
*
67605458 AAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACCAAAATACCCCTGGCTTGT
*
67605485 AAAATTACCAAAATACCCCTGACTTGT
1 AAAATTACCAAAATACCCCTGGCTTGT
* *
67605512 GAAATTATCAAAATAC
1 AAAATTACCAAAATAC
67605528 TCTCGATTTG
Statistics
Matches: 125, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
26 5 0.04
27 116 0.93
28 4 0.03
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGCTTGT
Found at i:67605517 original size:81 final size:82
Alignment explanation
Indices: 67605350--67605557 Score: 210
Period size: 81 Copynumber: 2.6 Consensus size: 82
67605340 CTCGATTTAC
* ** * *
67605350 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCGTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACCA
* * **
67605414 AAAAATCGCTGGTTTGT
66 AAAAACCCCTGACTTGT
* *
67605431 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGCT-TGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACCA
*
67605495 AAATACCCCTGACTTGT
66 AAAAACCCCTGACTTGT
* * * * *
67605512 GAAATTA-TCAAAATA-CTCTCGATTTGTAAAA-TATCGAAATACCCCT
1 AAAATTACT-AAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCT
67605558 GTAGGGTAGA
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
80 17 0.16
81 85 0.79
82 5 0.05
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (82 bp):
AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACCA
AAAAACCCCTGACTTGT
Found at i:67605538 original size:27 final size:26
Alignment explanation
Indices: 67605427--67605558 Score: 108
Period size: 27 Copynumber: 4.9 Consensus size: 26
67605417 AATCGCTGGT
**
67605427 TTGTAAAATTA-CTAAAATACCCCTGGT
1 TTGT-AAATTATC-AAAATACCCCTGAC
*
67605454 TTGTAAAATTACCAAAATACCCCT-AGC
1 TTGT-AAATTATCAAAATACCCCTGA-C
*
67605481 TTGTAAAATTACCAAAATACCCCTGAC
1 TTGT-AAATTATCAAAATACCCCTGAC
* *
67605508 TTGTGAAATTATCAAAATA-CTCTCGAT
1 TTGT-AAATTATCAAAATACCCCT-GAC
* *
67605535 TTGTAAAATATCGAAATACCCCTG
1 TTGTAAATTATCAAAATACCCCTG
67605559 TAGGGTAGAA
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
26 16 0.18
27 73 0.80
28 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (26 bp):
TTGTAAATTATCAAAATACCCCTGAC
Found at i:67605577 original size:27 final size:27
Alignment explanation
Indices: 67605546--67605762 Score: 292
Period size: 27 Copynumber: 8.0 Consensus size: 27
67605536 TGTAAAATAT
**
67605546 CGAAATACCCCTGTAGGGTAGAATTTT
1 CGAAATACCCCTGTAGGGTAGAATTAC
67605573 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
67605600 TGAAATAACCCTGTAGGGTAGAATCAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
67605627 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
67605654 TGAAAAACCCCTGTAGGGAAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
67605681 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
67605708 CGAAATA-CCCTAGTAGGGTAGAATTAT
1 CGAAATACCCCT-GTAGGGTAGAATTAC
* * *
67605735 CGAGATACCCTTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
67605762 C
1 C
67605763 ATTTTGCCTT
Statistics
Matches: 165, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.02
27 159 0.96
28 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:67606068 original size:24 final size:24
Alignment explanation
Indices: 67606036--67606082 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
67606026 CAGTTTATCA
**
67606036 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCACCAGTTATT
67606059 AAAAGAGGCTAGGCCACCAGTTAT
1 AAAAG-GGCTAGGCCACCAGTTAT
67606083 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTAGGCCACCAGTTATT
Found at i:67608479 original size:27 final size:27
Alignment explanation
Indices: 67608457--67608801 Score: 539
Period size: 27 Copynumber: 12.8 Consensus size: 27
67608447 CAATTTGTAA
*
67608457 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
* *
67608484 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTATAG
* *
67608511 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAG
** *
67608538 AATTACCATTTTACCCTCGATTTCCAA
1 AATTACCATTTTACCCTCGATTTATAG
*
67608565 AATTACCA-TTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTATAG
*
67608591 AATTACCATTTTACTCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
* *
67608618 AATTACCATTTTACTCGCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
67608645 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
*
67608672 AATTACCATTTTACCCTCGATTTAAAG
1 AATTACCATTTTACCCTCGATTTATAG
* *
67608699 AATTACAATTTTACCCTCTATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
67608726 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAG
*
67608753 AATTACCATTTTACCCTCGATTTATAT
1 AATTACCATTTTACCCTCGATTTATAG
67608780 AATTACCATTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
67608802 ACTATTTTAC
Statistics
Matches: 299, Mismatches: 18, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
26 24 0.08
27 275 0.92
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTATAG
Found at i:67608808 original size:18 final size:18
Alignment explanation
Indices: 67608781--67608819 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
67608771 GATTTATATA
67608781 ATTACCATTTTACCCTCG
1 ATTACCATTTTACCCTCG
*
67608799 ATTACTATTTTACCCTCG
1 ATTACCATTTTACCCTCG
67608817 ATT
1 ATT
67608820 TGTAGAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.28, G:0.05, T:0.44
Consensus pattern (18 bp):
ATTACCATTTTACCCTCG
Found at i:67608809 original size:45 final size:45
Alignment explanation
Indices: 67608754--67608846 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
67608744 GATTTATAGA
*
67608754 ATTACCATTTTACCCTCGATTTATATAATTACCA-TTTTACCCTCG
1 ATTACCATTTTACCCTCGATTTATAGAATTA-CAGTTTTACCCTCG
* * * *
67608799 ATTACTATTTTACCCTCGATTTGTAGAATTATAGTTTTTCCCTCG
1 ATTACCATTTTACCCTCGATTTATAGAATTACAGTTTTACCCTCG
67608844 ATT
1 ATT
67608847 TACAAAATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 1 0.02
45 41 0.98
ACGTcount: A:0.25, C:0.23, G:0.08, T:0.45
Consensus pattern (45 bp):
ATTACCATTTTACCCTCGATTTATAGAATTACAGTTTTACCCTCG
Found at i:67608876 original size:99 final size:99
Alignment explanation
Indices: 67608700--67608901 Score: 226
Period size: 99 Copynumber: 2.0 Consensus size: 99
67608690 GATTTAAAGA
* * * ***
67608700 ATTACAATTTTACCCTCTATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTT
1 ATTACAATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAAT
* * ***
67608765 ACCCTCGATTTATATAATTACCATTTTACCCTCG
66 ACCATCGATTTATAAAATTACCAAAATACCCTCG
* * * * *
67608799 ATTACTATTTTACCCTCGATTTGTAGAATTA-TAGTTTTTCCCTCGATTTACAAAATTACTAAAA
1 ATTACAATTTTACCCTCGATTTATAGAATTACCA-TTTTACCCTCGATTTACAAAATTACCAAAA
* *
67608863 TACCATTGGTTTATAAAATTACCAAAATACCCTCG
65 TACCATCGATTTATAAAATTACCAAAATACCCTCG
67608898 ATTA
1 ATTA
67608902 GTAAAATTAC
Statistics
Matches: 84, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
98 1 0.01
99 83 0.99
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (99 bp):
ATTACAATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAAT
ACCATCGATTTATAAAATTACCAAAATACCCTCG
Found at i:67608898 original size:126 final size:126
Alignment explanation
Indices: 67608673--67608913 Score: 277
Period size: 126 Copynumber: 1.9 Consensus size: 126
67608663 GATTTATAGA
* * * ***
67608673 ATTACCATTTTACCCTCGATTTAAAGAATTACAATTTTACCCTCTATTTATAGAATTACCATTTT
1 ATTACCATTTTACCCTCGATTTAAAGAATTACAATTTTACCCTCGATTTACAAAATTACCAAAAT
* * *** *
67608738 ACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTA-TATAATTACCATTTTACCCTCG
66 ACCATCGATTTATAAAATTACCAAAATACCCTCGA-TTAGTAAAATTACCATTTTACCCTCG
* ** * * * *
67608799 ATTACTATTTTACCCTCGATTTGTAGAATTATAGTTTTTCCCTCGATTTACAAAATTACTAAAAT
1 ATTACCATTTTACCCTCGATTTAAAGAATTACAATTTTACCCTCGATTTACAAAATTACCAAAAT
* *
67608864 ACCATTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCA
66 ACCATCGATTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCA
67608914 AAATACCCCT
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
125 3 0.03
126 90 0.97
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (126 bp):
ATTACCATTTTACCCTCGATTTAAAGAATTACAATTTTACCCTCGATTTACAAAATTACCAAAAT
ACCATCGATTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCATTTTACCCTCG
Found at i:67608906 original size:27 final size:27
Alignment explanation
Indices: 67608838--67609054 Score: 158
Period size: 27 Copynumber: 8.1 Consensus size: 27
67608828 TATAGTTTTT
** *
67608838 CCCTCGATTTACAAAATTACTAAAATA
1 CCCTCGATTTGTAAAATTACCAAAATA
* * * *
67608865 CCATTGGTTTATAAAATTACCAAAATA
1 CCCTCGATTTGTAAAATTACCAAAATA
*
67608892 CCCTCGATTAGTAAAATTACCAAAATA
1 CCCTCGATTTGTAAAATTACCAAAATA
* * *
67608919 CCC-CTAGCTTGTAAAATTACTAAAATA
1 CCCTCGA-TTTGTAAAATTACCAAAATA
* *
67608946 CCC-CTAGTTTGTAAAATTACCGAAATA
1 CCCTCGA-TTTGTAAAATTACCAAAATA
* ** *
67608973 -GCTCTGGCTTGTAAAATTGCCAAAATA
1 CCCTC-GATTTGTAAAATTACCAAAATA
* * *
67609000 CCC-CTGATTTTTGAAATTATCAAAATA
1 CCCTC-GATTTGTAAAATTACCAAAATA
* *
67609027 CTCTC-ATTTGTAAAA-TATCAAAATA
1 CCCTCGATTTGTAAAATTACCAAAATA
67609052 CCC
1 CCC
67609055 CTGTAGGGTA
Statistics
Matches: 151, Mismatches: 34, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
25 12 0.08
26 11 0.07
27 126 0.83
28 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
CCCTCGATTTGTAAAATTACCAAAATA
Found at i:67609003 original size:54 final size:55
Alignment explanation
Indices: 67608876--67609083 Score: 182
Period size: 54 Copynumber: 3.9 Consensus size: 55
67608866 CATTGGTTTA
*
67608876 TAAAATTACCAAAATA-CCCTCGATTAGTAAAATTACCAAAATACCCCTAGCTTG
1 TAAAATTACCAAAATACCCCTAGATTAGTAAAATTACCAAAATACCCCTAGCTTG
* * * * * *
67608930 TAAAATTACTAAAATACCCCTAG-TTTGTAAAATTACCGAAATAGCTCTGGCTTG
1 TAAAATTACCAAAATACCCCTAGATTAGTAAAATTACCAAAATACCCCTAGCTTG
* ** * * * *
67608984 TAAAATTGCCAAAATACCCCT-GATTTTTGAAATTATCAAAATA-CTCTCA-TTTG
1 TAAAATTACCAAAATACCCCTAGATTAGTAAAATTACCAAAATACCCCT-AGCTTG
* *
67609037 TAAAA-TATCAAAATACCCCT-G--TAGGGTAGAATTACCAAAATACCCCT
1 TAAAATTACCAAAATACCCCTAGATTA--GTAAAATTACCAAAATACCCCT
67609084 GTAGGATAGA
Statistics
Matches: 125, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
50 1 0.01
52 27 0.22
53 16 0.13
54 76 0.61
55 5 0.04
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (55 bp):
TAAAATTACCAAAATACCCCTAGATTAGTAAAATTACCAAAATACCCCTAGCTTG
Found at i:67609027 original size:81 final size:81
Alignment explanation
Indices: 67608850--67609004 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 81
67608840 CTCGATTTAC
** *
67608850 AAAATTACTAAAATACCATTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTAGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
67608915 AATACCCCTAGCTTGT
66 AATACCCCTAGCTTGT
* * * * * *
67608931 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCGAAATAGCTCTGGCTT-GTAAAATTGCCA
1 AAAATTACTAAAATACCCCTAGTTTATAAAATTACCAAAATA-CCCTCGATTAGTAAAATTACCA
67608995 AAATACCCCT
65 AAATACCCCT
67609005 GATTTTTGAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 58 0.91
82 6 0.09
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
AATACCCCTAGCTTGT
Found at i:67609083 original size:27 final size:27
Alignment explanation
Indices: 67609045--67609262 Score: 256
Period size: 27 Copynumber: 8.1 Consensus size: 27
67609035 TGTAAAATAT
67609045 CAAAATACCCCTGTAGGGTAGAATTAC
1 CAAAATACCCCTGTAGGGTAGAATTAC
*
67609072 CAAAATACCCCTGTAGGATAGAATTAC
1 CAAAATACCCCTGTAGGGTAGAATTAC
* * * *
67609099 TAAAATAACCCTATAGGGTAGAATTAA
1 CAAAATACCCCTGTAGGGTAGAATTAC
* **
67609126 CGAAATACCCCTGTAGATTAGAATTAC
1 CAAAATACCCCTGTAGGGTAGAATTAC
* * *
67609153 TAAAATACCCCTATAAGGTAGAATTAC
1 CAAAATACCCCTGTAGGGTAGAATTAC
* * *
67609180 CGAAATACCCTTGTAGGGTAGAAATAC
1 CAAAATACCCCTGTAGGGTAGAATTAC
*
67609207 CAAAATACCCCTGTAGGGTAGAATTAT
1 CAAAATACCCCTGTAGGGTAGAATTAC
* * * * *
67609234 CGAGATACCCTTGTGGGGTAAAATTAC
1 CAAAATACCCCTGTAGGGTAGAATTAC
67609261 CA
1 CA
67609263 TTTTGCCCCT
Statistics
Matches: 155, Mismatches: 36, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.24
Consensus pattern (27 bp):
CAAAATACCCCTGTAGGGTAGAATTAC
Found at i:67609424 original size:16 final size:16
Alignment explanation
Indices: 67609403--67609434 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67609393 CAAATATGGG
*
67609403 CATGACATTTTGCATA
1 CATGACATGTTGCATA
67609419 CATGACATGTTGCATA
1 CATGACATGTTGCATA
67609435 GGTTGGGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:67609496 original size:25 final size:25
Alignment explanation
Indices: 67609462--67609558 Score: 131
Period size: 25 Copynumber: 3.9 Consensus size: 25
67609452 GGAGGAAGTG
* *
67609462 CTAAAAGGGCTATGCCCCGGTTTAC
1 CTAAAAGGGCTTTGCCCCAGTTTAC
67609487 CTAAAAGGGCTTTGCCCCAGTTTAC
1 CTAAAAGGGCTTTGCCCCAGTTTAC
* ** *
67609512 CGAAAATTGCTTTGCCCCAGTTTAT
1 CTAAAAGGGCTTTGCCCCAGTTTAC
*
67609537 CAAAAAGGGCTTTGCCCCAGTT
1 CTAAAAGGGCTTTGCCCCAGTT
67609559 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (25 bp):
CTAAAAGGGCTTTGCCCCAGTTTAC
Found at i:67611896 original size:28 final size:28
Alignment explanation
Indices: 67611833--67611912 Score: 128
Period size: 28 Copynumber: 2.9 Consensus size: 28
67611823 CACTAGATAT
*
67611833 AGATA-TTGTGGCAGAGCCACCAG-AAC
1 AGATATTTGTGGCATAGCCACCAGAAAC
*
67611859 AGAAATTTGTGGCATAGCCACCAGAAAC
1 AGATATTTGTGGCATAGCCACCAGAAAC
67611887 AGATATTTGTGGCATAGCCACCAGAA
1 AGATATTTGTGGCATAGCCACCAGAA
67611913 CGCTTTCTCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 4 0.08
27 17 0.35
28 28 0.57
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (28 bp):
AGATATTTGTGGCATAGCCACCAGAAAC
Found at i:67618633 original size:37 final size:37
Alignment explanation
Indices: 67618574--67618682 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
67618564 AGCTCAGACG
* *
67618574 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
67618611 AAATCTCCACACGTGGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
67618648 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
67618683 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:67618963 original size:47 final size:47
Alignment explanation
Indices: 67618932--67619454 Score: 848
Period size: 47 Copynumber: 11.1 Consensus size: 47
67618922 CACTTCCACG
**
67618932 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
67618979 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
67619026 TTCATCGCATTGGCCATTCGGCCTTATCACATAAATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
** *
67619073 TTTGTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
67619120 TTCATCGCATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
67619167 TTCATCGCATTGGCCATTCAGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
67619214 TTCATCGCATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
67619261 TTCATCGCATTGGCCATTCGGCCTTATCACATATATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
67619308 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
67619355 TTCATCACATTGGCCATTCCGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
67619402 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
67619449 TTCATC
1 TTCATC
67619455 TCATAAAATC
Statistics
Matches: 448, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 448 1.00
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:67619339 original size:22 final size:21
Alignment explanation
Indices: 67619311--67619433 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 21
67619301 GTTCACATTC
67619311 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTC-GCCTT
* * *
67619333 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCA--TTCGCCTT
67619357 CATCACATTGGCCATTCCGCCTT
1 -ATCACATTGGCCATT-CGCCTT
* * *
67619380 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCA--TTCGCCTT
67619404 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTC-GCCTT
67619427 ATCACAT
1 ATCACAT
67619434 ATATGCATGT
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 26 0.35
23 15 0.20
24 15 0.20
25 19 0.25
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (21 bp):
ATCACATTGGCCATTCGCCTT
Found at i:67623463 original size:40 final size:40
Alignment explanation
Indices: 67623431--67623662 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
67623421 CCAGCATGAT
* * * *
67623431 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
67623471 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
67623511 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
67623551 TGCTCTTCGAGACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
67623591 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
67623631 TGCTCTTCGGGACTTAGCTCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
67623663 CTCAATTCTC
Statistics
Matches: 178, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:67624994 original size:37 final size:37
Alignment explanation
Indices: 67624935--67625043 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
67624925 AGCTCAGACG
* * *
67624935 AAATCTCCACACGAAGTTATCGGGTCCTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
67624972 AAATCTCCACACGTGGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
67625009 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
67625044 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:67625314 original size:47 final size:47
Alignment explanation
Indices: 67625257--67625426 Score: 137
Period size: 47 Copynumber: 3.6 Consensus size: 47
67625247 ACACGTTTCG
* * *
67625257 CATTAGCCATTC-AACTTCGCCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCTAACTT-ACCACATATATACA-TGTCCACATTCATCA
* * * *
67625304 CATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCTAACTTACCACATATATACATGTCCACATTCATCA
*** * * * * * *
67625351 CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACATTCATCG
1 CATTGGCCATTCTAACTTACCACATATATACATGTCCACATTCATCA
* * *
67625398 CATTGGCCATTCGACCTTATCACATATAT
1 CATTGGCCATTCTAACTTACCACATATAT
67625427 GTCATTGGCC
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
46 1 0.01
47 102 0.95
48 4 0.04
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCTAACTTACCACATATATACATGTCCACATTCATCA
Found at i:67625427 original size:47 final size:47
Alignment explanation
Indices: 67625297--67625427 Score: 217
Period size: 47 Copynumber: 2.8 Consensus size: 47
67625287 CACTTCCACG
* *
67625297 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGACCTTATCACATATATGCAAGTTCACA
* *
67625344 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGACCTTATCACATATATGCAAGTTCACA
*
67625391 TTCATCGCATTGGCCATTCGACCTTATCACATATATG
1 TTCATCACATTGGCCATTCGACCTTATCACATATATG
67625428 TCATTGGCCA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 77 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGACCTTATCACATATATGCAAGTTCACA
Done.