Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 218 of 433
Found at i:67625440 original size:47 final size:46
Alignment explanation
Indices: 67625277--67625433 Score: 190
Period size: 47 Copynumber: 3.3 Consensus size: 46
67625267 TCAACTTCGC
* * * *
67625277 CACATATATACACTTCCACGTTCATCACATTGGCCATTCTACCTTAT
1 CACATATATGCA-TTGCACATTCATCACATTGGCCATTCGACCTTAT
* *
67625324 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCAT-TGCACATTCATCACATTGGCCATTCGACCTTAT
* *
67625371 CACACATATGCAAGTT-CACATTCATCGCATTGGCCATTCGACCTTAT
1 CACATATATGC-A-TTGCACATTCATCACATTGGCCATTCGACCTTAT
67625418 CACATATATGTCATTG
1 CACATATATG-CATTG
67625434 GCCATTCGGC
Statistics
Matches: 96, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
46 3 0.03
47 89 0.93
48 3 0.03
49 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (46 bp):
CACATATATGCATTGCACATTCATCACATTGGCCATTCGACCTTAT
Found at i:67625445 original size:78 final size:78
Alignment explanation
Indices: 67625351--67625505 Score: 258
Period size: 78 Copynumber: 2.0 Consensus size: 78
67625341 ACATTCATCA
*
67625351 CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACATTCATCGCATTGGCCATTC-GACCT
1 CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACATTCATCACATTGGCCATTCAG-CCT
*
67625415 TATCACATATATGT
65 TATCACACATATGT
* *
67625429 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACATTCATCACATTGGCCATTCAGCCTT
67625494 ATCACACATATG
66 ATCACACATATG
67625506 CAAGTTCACA
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
78 71 0.99
79 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (78 bp):
CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACATTCATCACATTGGCCATTCAGCCTT
ATCACACATATGT
Found at i:67625468 original size:47 final size:47
Alignment explanation
Indices: 67625429--67625702 Score: 440
Period size: 47 Copynumber: 5.8 Consensus size: 47
67625419 ACATATATGT
*
67625429 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * *
67625476 CATTGGCCATTCAGCCTTATCACACATATGCAAGTTCACATTCATCG
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
67625523 CATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCG
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
67625570 CATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * *
67625617 CATTGGCCATTTGGCCTTATCACATATATGTATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
67625664 CATTGGCCATTTGGCCTTATCACATATATGCATGTTCAC
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCAC
67625703 TGTAACATCC
Statistics
Matches: 214, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 214 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:67625471 original size:31 final size:31
Alignment explanation
Indices: 67625398--67625458 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
67625388 ACATTCATCG
67625398 CATTGGCCATTCGACCTTATCACATATATGT
1 CATTGGCCATTCGACCTTATCACATATATGT
*
67625429 CATTGGCCATTCGGCCTTATCACATATATG
1 CATTGGCCATTCGACCTTATCACATATATG
67625459 CATGTTCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (31 bp):
CATTGGCCATTCGACCTTATCACATATATGT
Found at i:67625486 original size:125 final size:127
Alignment explanation
Indices: 67625304--67625693 Score: 541
Period size: 125 Copynumber: 3.0 Consensus size: 127
67625294 ACGTTCATCA
*
67625304 CATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
67625369 ATCACACATATGCAAGTTCACATTCATCGCATTGGCCATTCGACCTTATCACATATATG-T-
66 ATCACACATATGCAAGTTCACATTCATCGCATTGGCCATTCGACCTTATCACATATATGTTC
* *
67625429 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCAGCCTT
1 CATTGGCCATTCGACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
67625494 ATCACACATATGCAAGTTCACATTCATCGCATTGGCCATTCGACCTTATCACACATATGCATGTT
66 ATCACACATATGCAAGTTCACATTCATCGCATTGGCCATTCGACCTTAT--CACATAT--ATG--
67625559 CACATTCATC
125 -----T--TC
* *
67625569 GCATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTTGGCCT
1 -CATTGGCCATTCGACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCT
* * * * * *
67625634 TATCACATATATGTATGTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATATG
65 TATCACACATATGCAAGTTCACATTCATCGCATTGGCCATTCGACCTTATCACATATATG
67625694 CATGTTCACT
Statistics
Matches: 236, Mismatches: 13, Indels: 20
0.88 0.05 0.07
Matches are distributed among these distances:
125 111 0.47
127 7 0.03
129 3 0.01
137 3 0.01
139 8 0.03
141 104 0.44
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (127 bp):
CATTGGCCATTCGACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATGCAAGTTCACATTCATCGCATTGGCCATTCGACCTTATCACATATATGTTC
Found at i:67625497 original size:22 final size:22
Alignment explanation
Indices: 67625429--67625499 Score: 56
Period size: 22 Copynumber: 3.1 Consensus size: 22
67625419 ACATATATGT
*
67625429 CATTGGCCATTCGGCCTTATCA
1 CATTGGCCATTCAGCCTTATCA
* *
67625451 CATATATG-CATGTTCA-CATTCATCA
1 CAT-T-GGCCA--TTCAGCCTT-ATCA
67625476 CATTGGCCATTCAGCCTTATCA
1 CATTGGCCATTCAGCCTTATCA
67625498 CA
1 CA
67625500 CATATGCAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 14
0.66 0.09 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
CATTGGCCATTCAGCCTTATCA
Found at i:67625640 original size:22 final size:22
Alignment explanation
Indices: 67625613--67625688 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
67625603 GTTCACATTC
67625613 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* * ** *
67625635 ATCACATATATG-TATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
67625659 CATCACATTGGCCATTTGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
67625682 ATCACAT
1 ATCACAT
67625689 ATATGCATGT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 14 0.36
23 9 0.23
24 9 0.23
25 7 0.18
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:67625756 original size:20 final size:20
Alignment explanation
Indices: 67625733--67625770 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
67625723 GTTTATTCGC
*
67625733 GATTTTTAATATTTTGTAAA
1 GATTTTTAAAATTTTGTAAA
67625753 GATTTTTAAAATTTTGTA
1 GATTTTTAAAATTTTGTA
67625771 TTTGGATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (20 bp):
GATTTTTAAAATTTTGTAAA
Found at i:67627428 original size:28 final size:28
Alignment explanation
Indices: 67627396--67627464 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
67627386 GCGTAGATCA
67627396 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67627424 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
67627452 CGATA-TACCCCTA
1 CGAAATTACCCCTA
67627465 GGGTTTAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67633763 original size:20 final size:20
Alignment explanation
Indices: 67633738--67633775 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67633728 GTTTATTCGC
*
67633738 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
67633758 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
67633776 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:67635446 original size:28 final size:28
Alignment explanation
Indices: 67635400--67635467 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
67635390 GCGTAGATCA
67635400 CGAAATTA-CCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
67635427 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
67635455 CGATA-TACCCCTA
1 CGAAATTACCCCTA
67635468 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 16 0.41
28 23 0.59
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:67640139 original size:4 final size:4
Alignment explanation
Indices: 67640130--67640160 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
67640120 TCCAAAAACT
67640130 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTT
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTT
67640161 TAGACCCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
TTTG
Found at i:67646785 original size:29 final size:29
Alignment explanation
Indices: 67646752--67646829 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
67646742 GTGACGAGAT
* *
67646752 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
*
67646781 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
* **
67646810 CGGCACTGGGTGTGCGAGCT
1 TGGCACTAAGTGTGCGAGCT
67646830 CGGAGGGTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:67668874 original size:17 final size:17
Alignment explanation
Indices: 67668852--67668891 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
67668842 GTTCTTTTCA
67668852 TGAGGCTTCAACTACCG
1 TGAGGCTTCAACTACCG
67668869 TGAGGCTTCAACTACCG
1 TGAGGCTTCAACTACCG
67668886 TGAGGC
1 TGAGGC
67668892 ATAAGCTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.23
Consensus pattern (17 bp):
TGAGGCTTCAACTACCG
Found at i:67677163 original size:37 final size:36
Alignment explanation
Indices: 67677120--67677201 Score: 92
Period size: 38 Copynumber: 2.2 Consensus size: 36
67677110 AAATAGAAGT
67677120 GAAAGAAAAAGAAATTGAAAAGGAAAAGAGAATGGGA
1 GAAAGAAAAAGAAATTGAAAAGGAAAA-AGAATGGGA
* * ** *
67677157 GAAAGAAAAAAGAGATTGAGATTGAAAAAGAATGTGA
1 GAAAG-AAAAAGAAATTGAAAAGGAAAAAGAATGGGA
*
67677194 GCAAGAAA
1 GAAAGAAA
67677202 CGTAAGTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
36 3 0.08
37 17 0.45
38 18 0.47
ACGTcount: A:0.60, C:0.01, G:0.28, T:0.11
Consensus pattern (36 bp):
GAAAGAAAAAGAAATTGAAAAGGAAAAAGAATGGGA
Found at i:67677177 original size:19 final size:18
Alignment explanation
Indices: 67677097--67677201 Score: 63
Period size: 17 Copynumber: 5.7 Consensus size: 18
67677087 TTTAAACAAA
*
67677097 ATTGAGAGAAGAAAAATAG
1 ATTGAGA-AAGAAAAAGAG
* * *
67677116 A-AGTGAAAGAAAAAGAA
1 ATTGAGAAAGAAAAAGAG
*
67677133 ATTGA-AAAGGAAAAGAG
1 ATTGAGAAAGAAAAAGAG
*
67677150 AATGGGAGAAAGAAAAAAGAG
1 -AT-TGAGAAAG-AAAAAGAG
**
67677171 ATTGAGATTGAAAAAGA-
1 ATTGAGAAAGAAAAAGAG
*
67677188 ATGTGAGCAAGAAA
1 AT-TGAGAAAGAAA
67677202 CGTAAGTTTA
Statistics
Matches: 64, Mismatches: 16, Indels: 13
0.69 0.17 0.14
Matches are distributed among these distances:
17 22 0.34
18 21 0.33
19 8 0.12
20 6 0.09
21 7 0.11
ACGTcount: A:0.59, C:0.01, G:0.28, T:0.12
Consensus pattern (18 bp):
ATTGAGAAAGAAAAAGAG
Found at i:67679849 original size:13 final size:13
Alignment explanation
Indices: 67679831--67679856 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67679821 CTAGCTACTG
67679831 TTGAATTTAATTT
1 TTGAATTTAATTT
67679844 TTGAATTTAATTT
1 TTGAATTTAATTT
67679857 GTGTCTTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TTGAATTTAATTT
Found at i:67680898 original size:24 final size:26
Alignment explanation
Indices: 67680871--67680920 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
67680861 GCTGAATCTT
*
67680871 CATCCTCA-TTCACCTAGCC-ATTTC
1 CATCATCATTTCACCTAGCCAATTTC
*
67680895 CATCATCATTTCACTTAGCCAATTTC
1 CATCATCATTTCACCTAGCCAATTTC
67680921 AGCCCTTCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 10 0.45
26 5 0.23
ACGTcount: A:0.24, C:0.36, G:0.04, T:0.36
Consensus pattern (26 bp):
CATCATCATTTCACCTAGCCAATTTC
Found at i:67687746 original size:93 final size:93
Alignment explanation
Indices: 67687634--67687806 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
67687624 CGCCCATAAG
** *
67687634 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67687699 ACGAGCTCGGGTGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
67687727 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67687792 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
67687807 CAAATATCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:67687802 original size:46 final size:46
Alignment explanation
Indices: 67687627--67687805 Score: 211
Period size: 46 Copynumber: 3.9 Consensus size: 46
67687617 TGTAACCCGC
* *
67687627 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* * *
67687673 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG-CTCG---CAT
* * *
67687723 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
* *
67687766 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGC
67687806 CCAAATATCC
Statistics
Matches: 114, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.63
47 30 0.26
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
Found at i:67690222 original size:29 final size:29
Alignment explanation
Indices: 67690176--67690270 Score: 102
Period size: 29 Copynumber: 3.2 Consensus size: 29
67690166 ATTATGAACA
*
67690176 AAGATACAAGAAAACCGAATAAAGAAATCC
1 AAGATA-AAGAAACCCGAATAAAGAAATCC
*
67690206 AAGATAGAGAAACCCGAATAAAGAAATCC
1 AAGATAAAGAAACCCGAATAAAGAAATCC
* * * *
67690235 -AGAATAAAGAGATCCAGGATAAAGAAACCC
1 AAG-ATAAAGA-AACCCGAATAAAGAAATCC
67690265 AAGATA
1 AAGATA
67690271 CGATACTATG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
28 2 0.04
29 27 0.49
30 24 0.44
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.11
Consensus pattern (29 bp):
AAGATAAAGAAACCCGAATAAAGAAATCC
Found at i:67690241 original size:15 final size:15
Alignment explanation
Indices: 67690183--67690261 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
67690173 ACAAAGATAC
*
67690183 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
67690197 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
67690212 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
67690226 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
67690241 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
67690256 AAGAAA
1 AAGAAA
67690262 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:67690270 original size:15 final size:15
Alignment explanation
Indices: 67690176--67690270 Score: 79
Period size: 15 Copynumber: 6.4 Consensus size: 15
67690166 ATTATGAACA
*
67690176 AAGATACAAGAAAACC
1 AAGATA-AAGAAATCC
*
67690192 GA-ATAAAGAAATCC
1 AAGATAAAGAAATCC
* *
67690206 AAGATAGAGAAACCC
1 AAGATAAAGAAATCC
*
67690221 GA-ATAAAGAAATCC
1 AAGATAAAGAAATCC
*
67690235 -AGAATAAAGAGATCC
1 AAG-ATAAAGAAATCC
* *
67690250 AGGATAAAGAAACCC
1 AAGATAAAGAAATCC
67690265 AAGATA
1 AAGATA
67690271 CGATACTATG
Statistics
Matches: 62, Mismatches: 13, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
13 1 0.02
14 19 0.31
15 40 0.65
16 2 0.03
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGATAAAGAAATCC
Found at i:67693236 original size:45 final size:46
Alignment explanation
Indices: 67693172--67693346 Score: 207
Period size: 45 Copynumber: 3.8 Consensus size: 46
67693162 TGTAACCCGC
67693172 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
67693217 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCAT
* * *
67693267 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
67693310 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
67693347 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 37 0.33
46 29 0.26
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:67693337 original size:93 final size:92
Alignment explanation
Indices: 67693179--67693350 Score: 308
Period size: 93 Copynumber: 1.9 Consensus size: 92
67693169 CGCCCATAAG
*
67693179 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67693244 CGAGCTCGGATGCCTAGTTACATCTCA
66 CGAGCTCGGATGCCTAGTTACATCTCA
*
67693271 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67693336 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
67693351 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCA
Found at i:67703353 original size:50 final size:50
Alignment explanation
Indices: 67703278--67703389 Score: 215
Period size: 50 Copynumber: 2.2 Consensus size: 50
67703268 TAAATGACCA
67703278 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTGATCT
1 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTGATCT
67703328 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTGATCT
1 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTGATCT
*
67703378 TGTGTATTCGGC
1 TGTATATTCGGC
67703390 TAAATGAGTG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 61 1.00
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (50 bp):
TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTGATCT
Found at i:67704413 original size:11 final size:11
Alignment explanation
Indices: 67704399--67704423 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
67704389 GTGCTTATAT
67704399 TGTGGTTGGTA
1 TGTGGTTGGTA
67704410 TGTGGTTGGTA
1 TGTGGTTGGTA
67704421 TGT
1 TGT
67704424 ACATGTGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.44, T:0.48
Consensus pattern (11 bp):
TGTGGTTGGTA
Found at i:67713754 original size:28 final size:28
Alignment explanation
Indices: 67713709--67713777 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
67713699 CAATTTAAAA
*
67713709 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
67713736 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
67713764 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
67713778 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:67714422 original size:27 final size:27
Alignment explanation
Indices: 67714392--67714453 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
67714382 GGGCAAAATG
67714392 GTAATTTTACCCCACTA-GGGTATTTCA
1 GTAATTTTACCCCAC-AGGGGTATTTCA
* *
67714419 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAGGGGTATTTCA
67714446 GTAATTTT
1 GTAATTTT
67714454 CAAACCATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (27 bp):
GTAATTTTACCCCACAGGGGTATTTCA
Found at i:67714476 original size:53 final size:51
Alignment explanation
Indices: 67714409--67714581 Score: 188
Period size: 54 Copynumber: 3.2 Consensus size: 51
67714399 TACCCCACTA
** *
67714409 GGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTT-CAAACCAT
1 GGGTATTTTGGTAATTTTA-CC-ACA-GGGTATTTTAGTAATTTTACAAACCAG
* *
67714462 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAA-TTT-T-ACCACAGGGTATTTTAGTAATTTTACAAACCAG
*
67714516 GGGTATTTTGGTAATTTTGTAAACCA-AGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAA-TTT-T--ACCACAGGGTATTTTAGTAATTTTACAAACCAG
67714570 GGGTATTTTGGT
1 GGGTATTTTGGT
67714582 TTTATAAACC
Statistics
Matches: 107, Mismatches: 8, Indels: 9
0.86 0.06 0.07
Matches are distributed among these distances:
53 30 0.28
54 70 0.65
55 6 0.06
56 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (51 bp):
GGGTATTTTGGTAATTTTACCACAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:67714493 original size:27 final size:27
Alignment explanation
Indices: 67714436--67714616 Score: 217
Period size: 27 Copynumber: 6.9 Consensus size: 27
67714426 TACCCTACAG
* * *
67714436 GGGTATTTTAGTAATTTT-CAAACCAT
1 GGGTATTTTGGTAATTTTATAAACCAA
*
67714462 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
67714489 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
67714516 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
67714543 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
67714570 GGGTATTTTGG---TTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
67714594 GGGTATTTTGGTAATTCTATAAA
1 GGGTATTTTGGTAATTTTATAAA
67714617 TTGAAGGTAA
Statistics
Matches: 129, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
24 21 0.16
26 17 0.13
27 91 0.71
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:67714523 original size:80 final size:81
Alignment explanation
Indices: 67714408--67714609 Score: 243
Period size: 80 Copynumber: 2.5 Consensus size: 81
67714398 TTACCCCACT
* ** * *
67714408 AGGGTATTTCAGTAATTTTACCCTA-CAGGGGTATTTTAGTAATTTT-CAAACCATGGGTATTTT
1 AGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTT
* *
67714471 GGTAATTTTATAAACAA
65 AGTAATTTTACAAACAA
*
67714488 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTA
*
67714553 GTAATTTTACAAACTA
66 GTAATTTTACAAACAA
* * * *
67714569 GGGGTATTTT-G--GTTTTATAAACCAAGGGTATTTTGGTAATT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATT
67714610 CTATAAATTG
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
78 27 0.25
79 2 0.02
80 40 0.37
81 38 0.36
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTA
GTAATTTTACAAACAA
Found at i:67714533 original size:54 final size:54
Alignment explanation
Indices: 67714436--67714609 Score: 275
Period size: 54 Copynumber: 3.3 Consensus size: 54
67714426 TACCCTACAG
* *
67714436 GGGTATTTTAGTAATTTT-CAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
67714489 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
67714543 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGG---TTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
67714594 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
67714610 CTATAAATTG
Statistics
Matches: 114, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
51 27 0.24
53 18 0.16
54 69 0.61
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:67714689 original size:81 final size:81
Alignment explanation
Indices: 67714604--67714758 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 81
67714594 GGGTATTTTG
* *
67714604 GTAATTCTATAAATTGAAGGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTAT
1 GTAATTCTATAAACTGAAGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTAC
67714668 AAATCGAGGGTAAAATA
65 AAATCGAGGGTAAAATA
* * ** * *
67714685 GTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACA
1 GTAATTCTATAAACTGAAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACA
*
67714750 AGTCGAGGG
66 AATCGAGGG
67714759 CATTTCAATA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 63 0.98
82 1 0.02
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
GTAATTCTATAAACTGAAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACA
AATCGAGGGTAAAATA
Found at i:67714758 original size:27 final size:27
Alignment explanation
Indices: 67714602--67714744 Score: 182
Period size: 27 Copynumber: 5.3 Consensus size: 27
67714592 AAGGGTATTT
* * *
67714602 TGGTAATTCTATAAATTGAAGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
**
67714629 CAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TGGTAATTCTGTAAATC-GAGGGTAAAA
* *
67714656 CGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
*
67714683 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TGGTAATTCTGTAAATC-GAGGGTAAAA
67714710 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAAA
67714737 TGGTAATT
1 TGGTAATT
67714745 TTACAAGTCG
Statistics
Matches: 101, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.01
27 98 0.97
28 2 0.02
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
TGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:67714758 original size:54 final size:54
Alignment explanation
Indices: 67714602--67714744 Score: 232
Period size: 54 Copynumber: 2.6 Consensus size: 54
67714592 AAGGGTATTT
* * *
67714602 TGGTAATTCTATAAATTGAAGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
*
67714656 CGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
* *
67714710 TGGTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 TGGTAATTCTATAAATCGAGGGTAAAATAGTAATT
67714745 TTACAAGTCG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
TGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAA
Found at i:67723443 original size:41 final size:41
Alignment explanation
Indices: 67723398--67723515 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67723388 TGAAAGATAA
67723398 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67723439 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67723469 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67723510 ATGTAG
1 ATGTAG
67723516 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67723454 original size:71 final size:71
Alignment explanation
Indices: 67723366--67723529 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67723356 GAGATGTATC
67723366 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67723431 AGGACA
66 AGGACA
67723437 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67723502 AGGACA
66 AGGACA
67723508 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67723530 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67725293 original size:21 final size:22
Alignment explanation
Indices: 67725239--67725293 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 22
67725229 CTCTTCCAAA
67725239 CTCAAA-TCGA-TAACTCCCTC
1 CTCAAATTCGACTAACTCCCTC
* * * *
67725259 ATCAAATCCCACTAA-TCTCTC
1 CTCAAATTCGACTAACTCCCTC
67725280 CTCAAATTCGACTA
1 CTCAAATTCGACTA
67725294 TCCACTCCCA
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
20 5 0.19
21 18 0.69
22 3 0.12
ACGTcount: A:0.33, C:0.36, G:0.04, T:0.27
Consensus pattern (22 bp):
CTCAAATTCGACTAACTCCCTC
Found at i:67726928 original size:17 final size:19
Alignment explanation
Indices: 67726906--67726943 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
67726896 AAGGGAGAAT
67726906 AAAG-AAATG-GAAAAAAA
1 AAAGAAAATGAGAAAAAAA
67726923 AAAGAAAATGATGAAAAAAA
1 AAAGAAAATGA-GAAAAAAA
67726943 A
1 A
67726944 TGTGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 5 0.28
20 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAGAAAATGAGAAAAAAA
Found at i:67728284 original size:29 final size:29
Alignment explanation
Indices: 67728252--67728352 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 29
67728242 GTGACGAGAT
* *
67728252 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
67728281 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
67728310 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
67728339 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
67728353 AGTGATCGAG
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 57 0.97
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:67732518 original size:46 final size:46
Alignment explanation
Indices: 67732448--67732573 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
67732438 TTGGGCATCT
* * *
67732448 GAGCTCGTTGAGTCGAGTCTGAGTTCACTTATGGATGCGAATGTCC
1 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCC
* *
67732494 GAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCC
*
67732540 GAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGG
1 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
67732574 GCGGGTTACA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCC
Found at i:67741501 original size:27 final size:26
Alignment explanation
Indices: 67741467--67741537 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 26
67741457 TAACCCATAC
*
67741467 TAAATAGGACACAATTAAAGATGTCT
1 TAAATAGGACACAATTAAAGATGTAT
* *
67741493 TAATCTAGGACAC-ATTAAAAGCTGTAT
1 TAA-ATAGGACACAATT-AAAGATGTAT
*
67741520 TAAATAAGACACAATTAA
1 TAAATAGGACACAATTAA
67741538 TAAAAATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
26 15 0.41
27 22 0.59
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.27
Consensus pattern (26 bp):
TAAATAGGACACAATTAAAGATGTAT
Found at i:67744252 original size:47 final size:47
Alignment explanation
Indices: 67744160--67744252 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 47
67744150 TTAAGTTGCC
* * * *
67744160 TAAACTTAGGACACATTAAGTAGCTGTATTAACTAAAACATATTAAA
1 TAAACTTAGGACACATTAAATAGCTGAACTAACTAAAACACATTAAA
* * * *
67744207 TAAACTTAGGACATATTAAATAGCTGAACTGATTAGAACACATTAA
1 TAAACTTAGGACACATTAAATAGCTGAACTAACTAAAACACATTAA
67744253 TACTTAAACT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (47 bp):
TAAACTTAGGACACATTAAATAGCTGAACTAACTAAAACACATTAAA
Found at i:67746960 original size:40 final size:40
Alignment explanation
Indices: 67746911--67747061 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
67746901 ATCACGATTT
*
67746911 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
67746951 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
67746991 GCATAAATGTCC-TCGGGACTTAGCCCGGAT-GTA-GCCACTA
1 GCACAAATG-CCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* *
67747031 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
67747062 TAATTTCCAG
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.03
40 87 0.95
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:67746999 original size:80 final size:80
Alignment explanation
Indices: 67746915--67747101 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
67746905 CGATTTGCAC
* * *
67746915 AAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTCGCACGAA-TGCCTTCGGGTCTTAGCCCG
1 AAATGCCTTCGGGACTTAGCCCGGATAGAA-GCACTAGCAC-AATTGCCTTCGGGTCTTAACCCG
*
67746978 GATATAATTACTAGCAT
64 GATATAATTACCAGCAT
*
67746995 AAATGTCC-TCGGGACTTAGCCCGGAT-GTAGCCACTAGCACAATTGCCTTCGGGTCTTAACCCG
1 AAATG-CCTTCGGGACTTAGCCCGGATAGAAG-CACTAGCACAATTGCCTTCGGGTCTTAACCCG
*
67747058 GATATAATTTCCAGCAT
64 GATATAATTACCAGCAT
* * * *
67747075 TAACGTCTTCGGGACTTAGCTCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
67747102 TCATTCAAGT
Statistics
Matches: 91, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 83 0.91
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
AAATGCCTTCGGGACTTAGCCCGGATAGAAGCACTAGCACAATTGCCTTCGGGTCTTAACCCGGA
TATAATTACCAGCAT
Found at i:67752384 original size:27 final size:26
Alignment explanation
Indices: 67752346--67752422 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 26
67752336 GAATTTGATG
67752346 AAATGACTGTTATACCTCTAT-AAGGTA
1 AAATGACTGTTATACC-CTATGAA-GTA
*
67752373 AAATGATTGTTATACACCTATGAAGTA
1 AAATGACTGTTATAC-CCTATGAAGTA
*
67752400 AAATGACTGATATACCCTTATGA
1 AAATGACTGTTATACCC-TATGA
67752423 TATGTATGCC
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
26 2 0.05
27 39 0.89
28 3 0.07
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (26 bp):
AAATGACTGTTATACCCTATGAAGTA
Found at i:67758444 original size:48 final size:48
Alignment explanation
Indices: 67758340--67758609 Score: 173
Period size: 48 Copynumber: 5.7 Consensus size: 48
67758330 GACGAGAGCT
* *
67758340 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACG---AGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACGTATAGAGGTGTC
67758384 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGTATAGAGGTGTC
* * * * ** * *
67758432 AGTGTAATACCATATTTGGGACATGGCATCGGCACAAATATGTGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGTATA-GAG-GTGTC
* * ** * * * *
67758481 TAGTGTAAAACCATGTCTGGGATATGGTGTCGGCCTCGATTTCGA--TAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACG-TATAGAGGT-GTC
* * * * * *
67758531 AGTGTAAGACCATGTCTAGGACATGGCATCA--ACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGT-ATAGAGGTGTC
*
67758578 AGTGTATGACCATGTCTGGGACATGGCATCAG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG
67758610 TATTATACCC
Statistics
Matches: 173, Mismatches: 37, Indels: 28
0.73 0.16 0.12
Matches are distributed among these distances:
44 9 0.05
45 18 0.10
46 11 0.06
47 31 0.18
48 42 0.24
49 29 0.17
50 29 0.17
51 3 0.02
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGTATAGAGGTGTC
Found at i:67758502 original size:50 final size:48
Alignment explanation
Indices: 67758243--67758507 Score: 156
Period size: 48 Copynumber: 5.6 Consensus size: 48
67758233 TTATTTGTAT
* * * *
67758243 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCACATTATG-AGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCACAATATGTGGA
* * * * * ** * * *
67758289 GCCAGTGTAAGAACATATCTGGGAAATGGCATCGTCATTGAGACG-AGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CAATATGTGGA
* *
67758337 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGT-G-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAATATGTGGA
* * * * *
67758382 TC-AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-GTATAGAGGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAATAT-GTGGA
* * *
67758429 G-TCAGTGTAATACCATATTTGGGACATGGCATCGGCACAAATATGTGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AATATGTG-GA
* *
67758479 GCTAGTGTAAAACCATGTCTGGGATATGG
1 GCTAGTGTAAGACCATGTCTGGGACATGG
67758508 TGTCGGCCTC
Statistics
Matches: 170, Mismatches: 33, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
44 11 0.06
45 18 0.11
46 32 0.19
47 27 0.16
48 52 0.31
49 2 0.01
50 27 0.16
51 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAATATGTGGA
Found at i:67768070 original size:29 final size:28
Alignment explanation
Indices: 67768003--67768074 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
67767993 AAAATTGTAC
* * *
67768003 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
67768031 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
67768060 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67768075 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:67775892 original size:30 final size:30
Alignment explanation
Indices: 67775856--67775956 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
67775846 GACAAGATTG
* * *
67775856 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
67775886 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
67775914 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
67775943 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67775957 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:67775968 original size:29 final size:28
Alignment explanation
Indices: 67775885--67775960 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
67775875 AAAATTGTAC
* *
67775885 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
67775913 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
67775942 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
67775961 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:67777920 original size:70 final size:71
Alignment explanation
Indices: 67777831--67777993 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
67777821 GAGATGTATC
67777831 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67777896 AGGACA
66 AGGACA
67777902 CCA-GTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67777966 AGGACA
66 AGGACA
67777972 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67777994 AGACAAATCG
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
70 70 0.77
71 21 0.23
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67785464 original size:41 final size:41
Alignment explanation
Indices: 67785419--67785536 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67785409 TGAAAGATAA
67785419 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67785460 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67785490 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67785531 ATGTAG
1 ATGTAG
67785537 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67785475 original size:71 final size:71
Alignment explanation
Indices: 67785387--67785550 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67785377 GAGATGTATC
67785387 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67785452 AGGACA
66 AGGACA
67785458 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67785523 AGGACA
66 AGGACA
67785529 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67785551 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67791809 original size:29 final size:28
Alignment explanation
Indices: 67791775--67791877 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
67791765 TACTCAATCA
*
67791775 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
67791804 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
67791833 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
67791862 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67791878 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:67794494 original size:10 final size:10
Alignment explanation
Indices: 67794475--67794507 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
67794465 CCTAGCCTAG
*
67794475 TCCATCCAGC
1 TCCATTCAGC
67794485 TCCATTCAGC
1 TCCATTCAGC
67794495 TCCATTCAGC
1 TCCATTCAGC
67794505 TCC
1 TCC
67794508 TACTTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.18, C:0.45, G:0.09, T:0.27
Consensus pattern (10 bp):
TCCATTCAGC
Found at i:67804408 original size:43 final size:45
Alignment explanation
Indices: 67804361--67804481 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 45
67804351 CATTGACTTA
*
67804361 GATTTACGAT-TAAGACTATGTCTGGGACATTGGCATCG-TATTT
1 GATTTACGATGTAAGACCATGTCTGGGACATTGGCATCGATATTT
* * * *
67804404 GATTT-TG-TGTAAGACCCTATCTGGGACAGTGGCATCGATATTT
1 GATTTACGATGTAAGACCATGTCTGGGACATTGGCATCGATATTT
* **
67804447 GA-TTAC-ATGTAAGACCACGTCTGGGATGTTGGCAT
1 GATTTACGATGTAAGACCATGTCTGGGACATTGGCAT
67804482 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
41 1 0.02
42 27 0.44
43 34 0.55
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (45 bp):
GATTTACGATGTAAGACCATGTCTGGGACATTGGCATCGATATTT
Found at i:67807654 original size:27 final size:27
Alignment explanation
Indices: 67807623--67807677 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
67807613 GACTGATTTG
67807623 ATGTTATTACCCTTTGATGAATTTGTA
1 ATGTTATTACCCTTTGATGAATTTGTA
*
67807650 ATGTTATTACCTTTTGATGAATTTGTA
1 ATGTTATTACCCTTTGATGAATTTGTA
67807677 A
1 A
67807678 AAATTTTGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.09, G:0.15, T:0.49
Consensus pattern (27 bp):
ATGTTATTACCCTTTGATGAATTTGTA
Found at i:67816813 original size:25 final size:25
Alignment explanation
Indices: 67816785--67816863 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
67816775 CGAATGGCCA
67816785 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ***
67816810 ATGTGAT-AAAGCCTAA-TGGCCA-
1 ATGTGATGAATGTGAAAGTGTATAT
67816832 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
67816857 ATGTGAT
1 ATGTGAT
67816864 AAGACCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:67816817 original size:47 final size:47
Alignment explanation
Indices: 67816763--67817242 Score: 735
Period size: 47 Copynumber: 10.2 Consensus size: 47
67816753 AGATATGTAC
*
67816763 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
67816810 ATGTGATAAAGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
67816857 ATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
67816904 ATGTGTTAAGGCCGAATGGCCAATGTGATGAATATGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
67816951 ATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
67816998 ATGTGATAAAGCCTAATGGCAAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
67817045 ATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
67817092 ATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * * *
67817139 ATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATAT
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * *
67817186 ATGTGATTAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAA
1 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
67817233 ATGTGATAAG
1 ATGTGATAAG
67817243 TCCCGAAGGG
Statistics
Matches: 389, Mismatches: 44, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 389 1.00
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
Found at i:67817001 original size:25 final size:25
Alignment explanation
Indices: 67816973--67817050 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
67816963 CTAATGGCCG
67816973 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * *
67816998 ATGTGAT-AAAGCCT-AATG-GCA-A-
1 ATGTGATGAATG--TGAAAGTGTATAT
67817020 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
67817045 ATGTGA
1 ATGTGA
67817051 CAAGGCCTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
21 1 0.03
22 10 0.25
23 6 0.15
24 6 0.15
25 16 0.40
26 1 0.03
ACGTcount: A:0.37, C:0.04, G:0.27, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:67821075 original size:62 final size:62
Alignment explanation
Indices: 67820879--67821075 Score: 127
Period size: 63 Copynumber: 3.1 Consensus size: 62
67820869 CCATAACTGA
*
67820879 ATACTACTTTCCCTTCTCACCTTTCTTTCTTTCATCTTTTCCTTTTCCCCATAGCTGAACCT
1 ATACTACTTTCCCTTCTCACCTTTCTTTCTTTCATCTTTTCCTTTTCCCCATAGCCGAACCT
* * ** ** * * * *
67820941 ATACT--TTCCTCTCTTTTGTCTCTTTCATCATT-TTCTTTTCTCTTGCCATTTTCCC-TTGCCA
1 ATACTACTT--TCCCTTCTCAC-CTTTC-T--TTCTT-TCATCT-TTTCCTTTTCCCCATAGCC-
* *
67821002 TAACCG
57 GAACCT
67821008 A-A-TACTACTTTCCCTTCTCACCTTTCTTTCTTTCATCTTTTCCTTTTCCCCATAGCCGAACCT
1 ATACTA---CTTTCCCTTCTCACCTTTCTTTCTTTCATCTTTTCCTTTTCCCCATAGCCGAACCT
67821071 ATACT
1 ATACT
67821076 TTCCTCTCTT
Statistics
Matches: 92, Mismatches: 25, Indels: 33
0.61 0.17 0.22
Matches are distributed among these distances:
60 2 0.02
62 12 0.13
63 20 0.22
64 12 0.13
65 6 0.07
66 11 0.12
67 20 0.22
68 7 0.08
70 2 0.02
ACGTcount: A:0.15, C:0.34, G:0.04, T:0.47
Consensus pattern (62 bp):
ATACTACTTTCCCTTCTCACCTTTCTTTCTTTCATCTTTTCCTTTTCCCCATAGCCGAACCT
Found at i:67821092 original size:130 final size:130
Alignment explanation
Indices: 67820859--67821112 Score: 481
Period size: 130 Copynumber: 2.0 Consensus size: 130
67820849 CTTTGTGTCG
*
67820859 TTTTCCCTTGCCATAACTGAATACTACTTTCCCTTCTCACCTTTCTTTCTTTCATCTTTTCCTTT
1 TTTTCCCTTGCCATAACCGAATACTACTTTCCCTTCTCACCTTTCTTTCTTTCATCTTTTCCTTT
* *
67820924 TCCCCATAGCTGAACCTATACTTTCCTCTCTTTTGTCTCTTTCATCATTTTCTTTTCTCTTGCCA
66 TCCCCATAGCCGAACCTATACTTTCCTCTCTTTTGTCTCTTTCATCATTTGCTTTTCTCTTGCCA
67820989 TTTTCCCTTGCCATAACCGAATACTACTTTCCCTTCTCACCTTTCTTTCTTTCATCTTTTCCTTT
1 TTTTCCCTTGCCATAACCGAATACTACTTTCCCTTCTCACCTTTCTTTCTTTCATCTTTTCCTTT
67821054 TCCCCATAGCCGAACCTATACTTTCCTCTCTTTTGTCTCTTTCATCATTTGCTTTTCTC
66 TCCCCATAGCCGAACCTATACTTTCCTCTCTTTTGTCTCTTTCATCATTTGCTTTTCTC
67821113 CATTGTTCCC
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 121 1.00
ACGTcount: A:0.14, C:0.33, G:0.05, T:0.48
Consensus pattern (130 bp):
TTTTCCCTTGCCATAACCGAATACTACTTTCCCTTCTCACCTTTCTTTCTTTCATCTTTTCCTTT
TCCCCATAGCCGAACCTATACTTTCCTCTCTTTTGTCTCTTTCATCATTTGCTTTTCTCTTGCCA
Found at i:67822405 original size:2 final size:2
Alignment explanation
Indices: 67822398--67822424 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67822388 GAGACTAGTC
67822398 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
67822425 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67836985 original size:40 final size:41
Alignment explanation
Indices: 67836936--67837047 Score: 131
Period size: 40 Copynumber: 2.8 Consensus size: 41
67836926 ACCAATAATC
*
67836936 TAGCCGAAGCTA-TAAAATATCGCACACTTAGTGCCACATA
1 TAGCCGAAGCTATTACAATATCGCACACTTAGTGCCACATA
* * * **
67836976 TAGCCGAAGCTATTCCAAT-TCGCACACTCAGTGCTATTTA
1 TAGCCGAAGCTATTACAATATCGCACACTTAGTGCCACATA
* *
67837016 TAGCCAAAGCTATTTCAA-ATCGCACACTTAGT
1 TAGCCGAAGCTATTACAATATCGCACACTTAGT
67837048 ACTGAACATA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
40 57 0.93
41 4 0.07
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (41 bp):
TAGCCGAAGCTATTACAATATCGCACACTTAGTGCCACATA
Found at i:67841188 original size:38 final size:38
Alignment explanation
Indices: 67841137--67841450 Score: 484
Period size: 38 Copynumber: 8.3 Consensus size: 38
67841127 ATATTTGATG
*
67841137 TATATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
67841175 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
** * * *
67841213 TATATTTGGGTTAAATCCCGCAGGCTTCATGATGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
67841251 TATGTCTGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
67841289 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
67841327 TATATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
67841365 TATATCCGGATTAAATCCCGTAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
67841403 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
67841441 TATATTCGGG
1 TATATCCGGG
67841451 CCTTTGAGCC
Statistics
Matches: 250, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 250 1.00
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.33
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:67842757 original size:28 final size:28
Alignment explanation
Indices: 67842721--67842795 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
67842711 ATCTTCGATG
* *
67842721 TCTCACACACTAAGTTCCATACTCAATA
1 TCTCGCACACTAAGTGCCATACTCAATA
* *
67842749 TCTCGCACACCAAGTGCCATTCTCAATA
1 TCTCGCACACTAAGTGCCATACTCAATA
*
67842777 TTTCGCACACTAAGTGCCA
1 TCTCGCACACTAAGTGCCA
67842796 CATATATATA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.31, C:0.33, G:0.09, T:0.27
Consensus pattern (28 bp):
TCTCGCACACTAAGTGCCATACTCAATA
Found at i:67846665 original size:42 final size:42
Alignment explanation
Indices: 67846619--67846845 Score: 204
Period size: 42 Copynumber: 5.3 Consensus size: 42
67846609 CAATCCAACT
* * * * *
67846619 ATGGTCTTACACGAAGTCTCACATTGATGCCATGTCCTAGAC
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAC
* * * **
67846661 ATGGTCTTATATGAAATCACATATCGATGCCGCATCCC-GAC
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAC
* * * * *
67846702 ACGGTCTTACACGAAATCTCATACCGAAGCCATATCCCAAAT
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAC
* * *
67846744 ATGGTCTTACACGTAATCTCATATCGATGTCGATGCCAATCCCAGAT
1 ATGGTCTTACACGAAATCTCATATCGATG-CCAT----ATCCCAGAC
** * *
67846791 ATGGTCTTACACGGGATCTCATATCAATGCCATGTCCCAGAC
1 ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAC
67846833 ATGGTCTTACACG
1 ATGGTCTTACACG
67846846 TATCACAATG
Statistics
Matches: 147, Mismatches: 32, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
41 33 0.22
42 74 0.50
43 3 0.02
46 3 0.02
47 34 0.23
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGGTCTTACACGAAATCTCATATCGATGCCATATCCCAGAC
Found at i:67846734 original size:83 final size:88
Alignment explanation
Indices: 67846621--67846845 Score: 228
Period size: 83 Copynumber: 2.6 Consensus size: 88
67846611 ATCCAACTAT
* * * * * * *
67846621 GGTCTTACACGAAGTCTCACATTGATGCCATGTCCTAGACATGGTCTTATATGAAATCACATATC
1 GGTCTTACACGAAATCTCATATCGAAGCCATGTCCCAGACATGGTCTTACACGAAATCACATATC
67846686 GATG-C-CG-C-ATCCC-GACAC
66 GATGTCACGCCAATCCCAGACAC
* * * * * *
67846704 GGTCTTACACGAAATCTCATACCGAAGCCATATCCCAAATATGGTCTTACACGTAATCTCATATC
1 GGTCTTACACGAAATCTCATATCGAAGCCATGTCCCAGACATGGTCTTACACGAAATCACATATC
* * *
67846769 GATGTCGATGCCAATCCCAGATAT
66 GATGTC-ACGCCAATCCCAGACAC
**
67846793 GGTCTTACACGGGATCTCATATC-AATGCCATGTCCCAGACATGGTCTTACACG
1 GGTCTTACACGAAATCTCATATCGAA-GCCATGTCCCAGACATGGTCTTACACG
67846846 TATCACAATG
Statistics
Matches: 113, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
83 56 0.50
84 1 0.01
86 1 0.01
87 1 0.01
88 7 0.06
89 47 0.42
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (88 bp):
GGTCTTACACGAAATCTCATATCGAAGCCATGTCCCAGACATGGTCTTACACGAAATCACATATC
GATGTCACGCCAATCCCAGACAC
Found at i:67846902 original size:37 final size:37
Alignment explanation
Indices: 67846817--67846954 Score: 140
Period size: 37 Copynumber: 3.8 Consensus size: 37
67846807 TCTCATATCA
*
67846817 ATGCCAT-GTCCCAGAC-ATGGTCTTACACGT-ATCACA
1 ATGCCATAG-CCCAG-CTATGGTCTTACACGTCATCACG
* * *
67846853 ATGCCATAGCCCAGCTATAGTCTTACATGTCATCATG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTCATCACG
* * *
67846890 ATGCCATAGCCCAACTATGGTTTTACACG-CTATTACG
1 ATGCCATAGCCCAGCTATGGTCTTACACGTC-ATCACG
* *
67846927 ATGCCATAGCCTAGCTATGGTTTTACAC
1 ATGCCATAGCCCAGCTATGGTCTTACAC
67846955 ATACTCACAT
Statistics
Matches: 86, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
35 1 0.01
36 25 0.29
37 60 0.70
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (37 bp):
ATGCCATAGCCCAGCTATGGTCTTACACGTCATCACG
Found at i:67846953 original size:74 final size:73
Alignment explanation
Indices: 67846817--67846953 Score: 179
Period size: 74 Copynumber: 1.9 Consensus size: 73
67846807 TCTCATATCA
67846817 ATGCCATGTCCCAGACATGGTCTTACACGTATCACAATGCCATAGCCCAGCTATAGTCTTACATG
1 ATGCCATGTCCCAGACATGGTCTTACACGTATCACAATGCCATAGCCCAGCTATAGTCTTACATG
67846882 TCATCATG
66 TCATCATG
* * * * * *
67846890 ATGCCATAG-CCCA-ACTATGGTTTTACACGCTATTACGATGCCATAGCCTAGCTATGGTTTTAC
1 ATGCCAT-GTCCCAGAC-ATGGTCTTACACG-TATCACAATGCCATAGCCCAGCTATAGTCTTAC
67846953 A
63 A
67846954 CATACTCACA
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
72 2 0.04
73 23 0.42
74 30 0.55
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (73 bp):
ATGCCATGTCCCAGACATGGTCTTACACGTATCACAATGCCATAGCCCAGCTATAGTCTTACATG
TCATCATG
Found at i:67849418 original size:20 final size:20
Alignment explanation
Indices: 67849393--67849435 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
67849383 GGGACTTAAC
67849393 CAAAAAT-TTAGAAAATTTTT
1 CAAAAATATT-GAAAATTTTT
*
67849413 CAAAAATATTTAAAATTTTT
1 CAAAAATATTGAAAATTTTT
67849433 CAA
1 CAA
67849436 CACTGCAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (20 bp):
CAAAAATATTGAAAATTTTT
Found at i:67849586 original size:15 final size:15
Alignment explanation
Indices: 67849563--67849593 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67849553 TCTAGCTTAG
67849563 TAAGATTTTAAATAA
1 TAAGATTTTAAATAA
*
67849578 TAAGTTTTTAAATAA
1 TAAGATTTTAAATAA
67849593 T
1 T
67849594 TTTAACTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
TAAGATTTTAAATAA
Found at i:67850528 original size:27 final size:27
Alignment explanation
Indices: 67850489--67850553 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
67850479 CATCACTGAA
* *
67850489 CACTTTGCTATGATTGGCATACTATAT
1 CACTTTGCCATGATTGGCACACTATAT
* *
67850516 CACTTTTCCATGATTGGCACACTTTAT
1 CACTTTGCCATGATTGGCACACTATAT
67850543 CACTTTGCCAT
1 CACTTTGCCAT
67850554 AGTTCAACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (27 bp):
CACTTTGCCATGATTGGCACACTATAT
Found at i:67850686 original size:31 final size:31
Alignment explanation
Indices: 67850617--67850790 Score: 242
Period size: 31 Copynumber: 5.5 Consensus size: 31
67850607 AGTGTAGCTA
* *
67850617 AAGCTACCACTTATCACTTG-TCACTTGTAGCCG
1 AAGCTACCACTTTTCAC-TGATCA--GGTAGCCG
* *
67850650 AAGCTACCACTATTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* *
67850681 GAGCTACCACTTTTCACTAATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
* *
67850712 AAGCTACTACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
67850743 AAGCTACCACTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCCG
67850774 AAGCTACCACTTTTCAC
1 AAGCTACCACTTTTCAC
67850791 ATTGTACACA
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
31 106 0.84
32 2 0.02
33 18 0.14
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCCG
Found at i:67850867 original size:33 final size:33
Alignment explanation
Indices: 67850783--67850895 Score: 131
Period size: 33 Copynumber: 3.5 Consensus size: 33
67850773 GAAGCTACCA
* *
67850783 CTTTTCACA-TTGTACACACAAGGCATACATTTC
1 CTTTTCA-AGTTGTACACACAAAGTATACATTTC
* * *
67850816 ATTTTCAAG-TGTACACACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACACAAAGTATACATTTC
* *
67850848 CTTTTGAAGTTGTACACACACAGTATACATTTC
1 CTTTTCAAGTTGTACACACAAAGTATACATTTC
*
67850881 CTTTTCCAGTTGTAC
1 CTTTTCAAGTTGTAC
67850896 CTTTTAGGTA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
32 27 0.41
33 39 0.59
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.36
Consensus pattern (33 bp):
CTTTTCAAGTTGTACACACAAAGTATACATTTC
Found at i:67853358 original size:27 final size:27
Alignment explanation
Indices: 67853320--67853419 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 27
67853310 TAAGTTGTAG
* ****
67853320 AATTACTAAAATACCCCTGCAGGGTAA
1 AATTACCAAAATACCCCTGGTTAGTAA
* *
67853347 AATTACCAAAATACCCTTGGTTAGCAA
1 AATTACCAAAATACCCCTGGTTAGTAA
* *
67853374 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTAGTAA
*
67853401 AATTACCAAAGTACCCCTG
1 AATTACCAAAATACCCCTG
67853420 ACTTACAGAA
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTAGTAA
Found at i:67857641 original size:15 final size:15
Alignment explanation
Indices: 67857621--67857650 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
67857611 TTCAGAACTC
67857621 ATGGTCACTATGAGT
1 ATGGTCACTATGAGT
67857636 ATGGTCACTATGAGT
1 ATGGTCACTATGAGT
67857651 TCTTGGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (15 bp):
ATGGTCACTATGAGT
Found at i:67860805 original size:20 final size:20
Alignment explanation
Indices: 67860782--67860827 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
67860772 CGGCTATTTC
*
67860782 GGGCCGCGATGGGCTGAAAT
1 GGGCCACGATGGGCTGAAAT
*
67860802 GGGCCATGATGGGCTGAAAT
1 GGGCCACGATGGGCTGAAAT
67860822 GGGCCA
1 GGGCCA
67860828 TGTGGTACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.20, G:0.43, T:0.15
Consensus pattern (20 bp):
GGGCCACGATGGGCTGAAAT
Found at i:67860828 original size:20 final size:20
Alignment explanation
Indices: 67860789--67860829 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
67860779 TTCGGGCCGC
67860789 GATGGGCTGAAATGGGCCAT
1 GATGGGCTGAAATGGGCCAT
67860809 GATGGGCTGAAATGGGCCAT
1 GATGGGCTGAAATGGGCCAT
67860829 G
1 G
67860830 TGGTACCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.15, G:0.41, T:0.20
Consensus pattern (20 bp):
GATGGGCTGAAATGGGCCAT
Found at i:67860930 original size:27 final size:27
Alignment explanation
Indices: 67860900--67860968 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
67860890 GGGTAGAATT
* *
67860900 ACCAAAATGCCCTTGGTTCGCAAAATC
1 ACCAAAATACCCCTGGTTCGCAAAATC
* * *
67860927 ACCAAAATACCCCTGGTTTGTAAAATT
1 ACCAAAATACCCCTGGTTCGCAAAATC
*
67860954 ACCAAAGTACCCCTG
1 ACCAAAATACCCCTG
67860969 ATTTACAGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (27 bp):
ACCAAAATACCCCTGGTTCGCAAAATC
Found at i:67860980 original size:27 final size:26
Alignment explanation
Indices: 67860920--67861019 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 26
67860910 CCTTGGTTCG
* * *
67860920 CAAAATCACCAAAATACCCCTGGTTTG
1 CAAAATTACC-AAATACCCCTGATTTA
*
67860947 TAAAATTACCAAAGTACCCCTGATTTA
1 CAAAATTACCAAA-TACCCCTGATTTA
* **
67860974 CAGAATTACCATTTTA-CCCTCGATTTA
1 CAAAATTACCA-AATACCCCT-GATTTA
67861001 CAAAATTACCGAAATACCC
1 CAAAATTACC-AAATACCC
67861020 TTGTAGGGTA
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
26 7 0.12
27 47 0.82
28 3 0.05
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.27
Consensus pattern (26 bp):
CAAAATTACCAAATACCCCTGATTTA
Found at i:67862615 original size:11 final size:11
Alignment explanation
Indices: 67862599--67862651 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
67862589 TATACTAAAT
67862599 AAATAATAATA
1 AAATAATAATA
67862610 AAATAATAAT-
1 AAATAATAATA
* *
67862620 AAATATCTCATTA
1 AAATA-AT-AATA
*
67862633 AAATATTAATA
1 AAATAATAATA
67862644 AAATAATA
1 AAATAATA
67862652 TTTATCTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 5 0.15
11 21 0.62
12 3 0.09
13 5 0.15
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (11 bp):
AAATAATAATA
Found at i:67862658 original size:31 final size:33
Alignment explanation
Indices: 67862599--67862664 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
67862589 TATACTAAAT
*
67862599 AAATAATAATAAAATAATAATAAATATCTCATTA
1 AAATAATAATAAAATAATAAT-AATATCTAATTA
* *
67862633 AAATATTAATAAAATAAT-AT-TTATCTAATTA
1 AAATAATAATAAAATAATAATAATATCTAATTA
67862664 A
1 A
67862665 TTAATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 10 0.34
33 2 0.07
34 17 0.59
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (33 bp):
AAATAATAATAAAATAATAATAATATCTAATTA
Found at i:67863667 original size:40 final size:40
Alignment explanation
Indices: 67863609--67863684 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
67863599 CATATATATA
*
67863609 TAGTCGAAGCTATCTCAAATCGCACACCAAATGCCACATT
1 TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCACATT
* * *
67863649 TAGTCGAAGCTATTTCAAACCGCACACTAAGTGCCA
1 TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCA
67863685 TTCTTAGCCG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.22
Consensus pattern (40 bp):
TAGTCGAAGCTATCTCAAACCGCACACCAAATGCCACATT
Found at i:67875183 original size:28 final size:27
Alignment explanation
Indices: 67875121--67875189 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 27
67875111 TAGTGAGTCT
*
67875121 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTATATAATCAACTC
*
67875148 GCACACTTAGTGCTATATGATCAAACTC
1 GCACACTTAGTGCTATATAATC-AACTC
67875176 GCACACTTAGTGCT
1 GCACACTTAGTGCT
67875190 GTACAAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
GCACACTTAGTGCTATATAATCAACTC
Found at i:67882758 original size:41 final size:41
Alignment explanation
Indices: 67882713--67882830 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67882703 TGAAAGATAA
67882713 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67882754 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67882784 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67882825 ATGTAG
1 ATGTAG
67882831 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67882769 original size:71 final size:71
Alignment explanation
Indices: 67882681--67882844 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67882671 GAGATGTATC
67882681 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67882746 AGGACA
66 AGGACA
67882752 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67882817 AGGACA
66 AGGACA
67882823 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67882845 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67890210 original size:41 final size:41
Alignment explanation
Indices: 67890165--67890282 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67890155 TGAAAGATAA
67890165 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67890206 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67890236 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67890277 ATGTAG
1 ATGTAG
67890283 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67890221 original size:71 final size:71
Alignment explanation
Indices: 67890133--67890296 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67890123 GAGATGTATC
67890133 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67890198 AGGACA
66 AGGACA
67890204 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67890269 AGGACA
66 AGGACA
67890275 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67890297 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67891708 original size:52 final size:53
Alignment explanation
Indices: 67891584--67891787 Score: 217
Period size: 52 Copynumber: 3.9 Consensus size: 53
67891574 GTAAGGTTTC
* * * *
67891584 TAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTA
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-C-A
* * * *
67891639 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAG-CATGGCATTGGTGAGTTCA
1 TAAGGC-AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
67891691 TAAGGCAAGGATACCATGTAAGACCAT-TCAAGACATGGCAATGGTAAGTT--
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
* * *
67891741 TCAA---AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 T-AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG
67891788 GTACCCACGT
Statistics
Matches: 131, Mismatches: 13, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
48 20 0.15
49 19 0.15
50 1 0.01
51 10 0.08
52 37 0.28
53 1 0.01
54 15 0.11
55 24 0.18
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
Found at i:67892000 original size:16 final size:16
Alignment explanation
Indices: 67891979--67892009 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67891969 ATAAATTTGA
67891979 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
67891995 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
67892010 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:67896445 original size:6 final size:6
Alignment explanation
Indices: 67896427--67896508 Score: 71
Period size: 6 Copynumber: 13.3 Consensus size: 6
67896417 AAGAAGCATT
*
67896427 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* *
67896476 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
67896509 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 5 0.08
6 48 0.77
7 6 0.10
8 3 0.05
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:67896472 original size:25 final size:25
Alignment explanation
Indices: 67896441--67896508 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
67896431 GAACTAGAAT
*
67896441 CAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
67896466 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
67896491 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
67896509 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:67896939 original size:27 final size:27
Alignment explanation
Indices: 67896911--67897483 Score: 772
Period size: 27 Copynumber: 21.2 Consensus size: 27
67896901 GGGCAAAATG
* * * *
67896911 GTAATTTTACCCCACAAGGGTATCTT-G
1 GTAATTCTACCCTACAGGGGTAT-TTCA
*
67896938 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
67896965 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67896992 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
67897019 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67897046 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
67897073 GTATTTCTACCCTACAAGGGTATATAA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
67897100 ATAATTCTACCATATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67897127 GTAATTTTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
67897154 GTAACTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* **
67897181 GTAATTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
**
67897208 GTAATTCTATTCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67897235 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
67897262 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67897289 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
67897315 GATATTTCTACCCTATAAGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
67897343 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67897370 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
67897397 GTAATTCTATCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67897424 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
67897451 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
67897478 GTAATT
1 GTAATT
67897484 TTTTTACATT
Statistics
Matches: 490, Mismatches: 53, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
26 3 0.01
27 486 0.99
28 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:67897535 original size:27 final size:27
Alignment explanation
Indices: 67897494--67897757 Score: 375
Period size: 27 Copynumber: 9.7 Consensus size: 27
67897484 TTTTTACATT
67897494 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
67897521 GAAGGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
67897548 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
67897575 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
67897602 GAGGGTAAAATAGTAATACTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
67897629 GAGGGTAAAATGATAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
67897656 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
67897683 AAGGGTAAAAATAGTAATTCTATAAATC
1 GAGGGT-AAAATGGTAATTCTGTAAATC
* *
67897711 GAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
67897738 GAGGGTAAAATGGTAATTCT
1 GAGGGTAAAATGGTAATTCT
67897758 ATCTTACAGG
Statistics
Matches: 206, Mismatches: 30, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
27 182 0.88
28 24 0.12
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTGTAAATC
Found at i:67897799 original size:27 final size:27
Alignment explanation
Indices: 67897769--67897918 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
67897759 TCTTACAGGA
67897769 GTATTTCAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
67897796 GTATTTCAGTAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
*
67897823 GTATTTCTGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* ** * *
67897850 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
67897877 GTACTTT-GGTAATTTTACAAGTTGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
67897904 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
67897919 GTAAACTAAA
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.04
27 97 0.92
28 4 0.04
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:67897825 original size:136 final size:136
Alignment explanation
Indices: 67897494--67897759 Score: 372
Period size: 136 Copynumber: 2.0 Consensus size: 136
67897484 TTTTTACATT
** ** * * ** *
67897494 GAGGGTAAAATGGTAATTCTGTAAATCGAAGGTAAGACGGTAATTCTGTAAATCGAGGGT-AAAA
1 GAGGGTAAAATCATAATTCTACAAATCGAGGGTAAAATAGTAATTCTGCAAATCGAGGGTAAAAA
*
67897558 TAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATACTA
66 TAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATACTA
67897623 TAAATC
131 TAAATC
* * * * *
67897629 GAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAAA
1 GAGGGTAAAATCATAATTCTACAAATCGAGGGTAAAATAGTAATTCTGCAAATCGAGGGTAAAAA
* *
67897694 TAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
66 TAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATACTA
67897759 T
131 T
67897760 CTTACAGGAG
Statistics
Matches: 121, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
135 54 0.45
136 67 0.55
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (136 bp):
GAGGGTAAAATCATAATTCTACAAATCGAGGGTAAAATAGTAATTCTGCAAATCGAGGGTAAAAA
TAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATACTA
TAAATC
Found at i:67901603 original size:42 final size:42
Alignment explanation
Indices: 67901490--67901613 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 42
67901480 AATACCGTAC
* * * *
67901490 CAATGGCATATCCTAGATATGGTCTTACATGTAATCTCGTAT
1 CAATGCCATATCCCAGATATGGTCTTACACGTAATCTCATAT
* * * *
67901532 CGATGCCAATAGCCCAGCTATGGTGTTACACG-AAGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATAT
* *
67901575 CAATGCCATATCCCATATATGGTCTTACACGTTATCTCA
1 CAATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
67901614 ACAACCCTAA
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGTAATCTCATAT
Found at i:67905854 original size:30 final size:30
Alignment explanation
Indices: 67905799--67905929 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
67905789 ATAGTGAATC
*
67905799 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
67905828 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
67905858 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
67905886 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
67905916 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67905930 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:67905909 original size:58 final size:58
Alignment explanation
Indices: 67905798--67905929 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
67905788 TATAGTGAAT
* * * * *
67905798 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
67905857 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
67905915 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
67905930 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:67913395 original size:29 final size:27
Alignment explanation
Indices: 67913362--67913446 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 27
67913352 AAACAAGTTC
67913362 ACATACCTGTATCTGGCCCATTA-GCCCA
1 ACATACCT-TAT-TGGCCCATTAGGCCCA
67913390 ATCATA--TTCATTGGCCCATTAGGCCCA
1 A-CATACCTT-ATTGGCCCATTAGGCCCA
67913417 A-ATCACCTATATATGGCCCATTAGGCCCA
1 ACAT-ACCT-TAT-TGGCCCATTAGGCCCA
67913446 A
1 A
67913447 ATCACATTTA
Statistics
Matches: 49, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
25 2 0.04
26 12 0.24
27 9 0.18
28 4 0.08
29 22 0.45
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (27 bp):
ACATACCTTATTGGCCCATTAGGCCCA
Found at i:67913470 original size:29 final size:29
Alignment explanation
Indices: 67913375--67913463 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 29
67913365 TACCTGTATC
*
67913375 TGGCCCATTA-GCCC-AATCATAT-TCAT-
1 TGGCCCATTAGGCCCAAATCACATAT-ATA
*
67913401 TGGCCCATTAGGCCCAAATCACCTATATA
1 TGGCCCATTAGGCCCAAATCACATATATA
*
67913430 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATATATA
67913459 TGGCC
1 TGGCC
67913464 TGTTAGGTGC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 10 0.18
27 4 0.07
28 8 0.15
29 33 0.60
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATATATA
Found at i:67913724 original size:24 final size:24
Alignment explanation
Indices: 67913697--67913747 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
67913687 GTAGCCAAAC
* *
67913697 TTTCGACTTTTCAGCATTTTGGCT
1 TTTCGACATTTCAGCATTTCGGCT
* *
67913721 TTTCGGCATTTCGGCATTTCGGCT
1 TTTCGACATTTCAGCATTTCGGCT
67913745 TTT
1 TTT
67913748 GCCGATTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.10, C:0.22, G:0.20, T:0.49
Consensus pattern (24 bp):
TTTCGACATTTCAGCATTTCGGCT
Found at i:67913734 original size:8 final size:8
Alignment explanation
Indices: 67913705--67913743 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
67913695 ACTTTCGACT
*
67913705 TTTCAGCA
1 TTTCGGCA
* *
67913713 TTTTGGCT
1 TTTCGGCA
67913721 TTTCGGCA
1 TTTCGGCA
67913729 TTTCGGCA
1 TTTCGGCA
67913737 TTTCGGC
1 TTTCGGC
67913744 TTTTGCCGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.44
Consensus pattern (8 bp):
TTTCGGCA
Found at i:67915309 original size:46 final size:47
Alignment explanation
Indices: 67915203--67915324 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
67915193 TGTCTTCGAC
** * *
67915203 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
67915253 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
67915299 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
67915325 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:67922666 original size:46 final size:47
Alignment explanation
Indices: 67922560--67922682 Score: 149
Period size: 46 Copynumber: 2.6 Consensus size: 47
67922550 ATGTTTCGAC
** * *
67922560 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
67922610 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
67922656 ATGGACTTACATGGCTCATTTCTGTCT
1 ATGGACTTACATGGCTCATTCCTGTCT
67922683 GTCCTGTCCT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
46 35 0.54
50 30 0.46
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:67925272 original size:43 final size:42
Alignment explanation
Indices: 67925189--67925334 Score: 120
Period size: 43 Copynumber: 3.4 Consensus size: 42
67925179 CTGAGATATT
* * * * *
67925189 GTGTAAGACCGTGTCTAGGACACATGCCTCGAT-TGAGATTTAC
1 GTGTAAGACCATGTCT-GGACAAAGGCATCGATAT-TGATTTAC
* *
67925232 GTATAAGACCATGTCTGTGA-AATCGGCATCG-TATCTGATTT-C
1 GTGTAAGACCATGTCTG-GACAA-AGGCATCGATAT-TGATTTAC
* *
67925274 GTGTAAGACCCTGTCTAGGACAAAGGCATCGATATTGAATTAC
1 GTGTAAGACCATGTCT-GGACAAAGGCATCGATATTGATTTAC
*
67925317 ATGTAAGACCATGTCTGG
1 GTGTAAGACCATGTCTGG
67925335 GACGTTGGCA
Statistics
Matches: 82, Mismatches: 14, Indels: 15
0.74 0.13 0.14
Matches are distributed among these distances:
42 34 0.41
43 48 0.59
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGACAAAGGCATCGATATTGATTTAC
Found at i:67927016 original size:66 final size:67
Alignment explanation
Indices: 67926887--67927016 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
67926877 GGGATGTATC
*
67926887 CCATGTAGACAAGAGAGCTACGTGTGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
67926952 AGGACA
62 AGGACA
* *
67926958 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
67927017 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:67935929 original size:13 final size:13
Alignment explanation
Indices: 67935911--67935936 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67935901 ATTTTTATTT
67935911 TTAACATAAAATA
1 TTAACATAAAATA
67935924 TTAACATAAAATA
1 TTAACATAAAATA
67935937 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:67942654 original size:40 final size:40
Alignment explanation
Indices: 67942403--67942647 Score: 415
Period size: 40 Copynumber: 6.2 Consensus size: 40
67942393 AACCCAAGTA
* *
67942403 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
67942442 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
67942482 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
67942521 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
67942561 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
67942601 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
67942641 CCTTCGG
1 CCTTCGG
67942648 ATCTTAGTCC
Statistics
Matches: 195, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
39 50 0.26
40 145 0.74
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:67942654 original size:80 final size:79
Alignment explanation
Indices: 67942403--67942647 Score: 427
Period size: 79 Copynumber: 3.1 Consensus size: 79
67942393 AACCCAAGTA
* * *
67942403 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* *
67942468 AACTAGCACAGATG
66 CACTAGCACAAATG
*
67942482 CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
67942547 CACTAGCACAAATG
66 CACTAGCACAAATG
67942561 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
67942626 TCACTAGCACAAATG
65 TCACTAGCACAAATG
67942641 CCTTCGG
1 CCTTCGG
67942648 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 87 0.55
80 71 0.45
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATG
Found at i:67944042 original size:13 final size:13
Alignment explanation
Indices: 67944024--67944049 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67944014 ATTTTTATTT
67944024 TTAACATAAAATA
1 TTAACATAAAATA
67944037 TTAACATAAAATA
1 TTAACATAAAATA
67944050 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:67946327 original size:29 final size:29
Alignment explanation
Indices: 67946263--67946367 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
67946253 TTCACATACC
* * *
67946263 TGTATCTGGCCCATTAAGCCC-AATCATAT
1 TGTATATGGCCCATTAGGCCCAAATCA-CT
*
67946292 TCT-TATGGCCCATTAGGCCCAAATCACT
1 TGTATATGGCCCATTAGGCCCAAATCACT
*
67946320 TGTATATGGCCCATTAGGCCCAAATCTCAT
1 TGTATATGGCCCATTAGGCCCAAATCAC-T
*
67946350 T-TATATGGCCCGTTAGGC
1 TGTATATGGCCCATTAGGC
67946368 ACAGTCACAT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
28 18 0.27
29 46 0.70
30 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACT
Found at i:67946615 original size:16 final size:16
Alignment explanation
Indices: 67946594--67946629 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
67946584 ATAGCCAAAC
67946594 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
67946610 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
67946626 TTTC
1 TTTC
67946630 GATATTTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.11, C:0.25, G:0.17, T:0.47
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:67950690 original size:21 final size:21
Alignment explanation
Indices: 67950651--67950690 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
67950641 TGAATTTAAC
*
67950651 TTCAATTTAATCCATTTCATA
1 TTCAATTTAATCCAATTCATA
*
67950672 TTCAATTTAATTCAATTCA
1 TTCAATTTAATCCAATTCA
67950691 CTTCCTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.17, G:0.00, T:0.47
Consensus pattern (21 bp):
TTCAATTTAATCCAATTCATA
Found at i:67951952 original size:21 final size:20
Alignment explanation
Indices: 67951928--67951966 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
67951918 GAGTATTTTG
67951928 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
67951949 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
67951967 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:67955784 original size:151 final size:152
Alignment explanation
Indices: 67955488--67955787 Score: 392
Period size: 151 Copynumber: 2.0 Consensus size: 152
67955478 GCCACACGGG
* * * *
67955488 TGTGTGTGTTGGCCGTGTGACCTAGGTCAGAGAGTTACATGAGTTCAGACACGGGCTGGGACACG
1 TGTGTGTGTTGGCCGTGTGACCCAAGTCAGAGAGTTACAAGAGGTCAGACACGGGCTGGGACACG
* * * * *
67955553 TCCATGTGCTTCCACTTTGAATGTCCACACAGCCTTTGACACGGGCATGTCTTTAGCCGTGTGAG
66 ACCATGTGCTTCCACTTTGAATATCCACACAGCCTGTGACACAGGCATGTCTTTAGCCGTGTGAA
*
67955618 ACACATGGCCAGGCCACACCTA
131 ACACACGGCCAGGCCACACCTA
* **
67955640 TGTGTGTGTTGGCCGTGTGACCCAAGTCAGAGAGTTACACAG-GGTCGGACATTGGCTGGGA-AC
1 TGTGTGTGTTGGCCGTGTGACCCAAGTCAGAGAGTTACA-AGAGGTCAGACACGGGCTGGGACAC
* * *
67955703 GACCATGTGCTTCC-TTTTCGAATATCCACAC-GACCTGTGACACAGGCATGTCTTTGGTCGTGT
65 GACCATGTGCTTCCACTTT-GAATATCCACACAG-CCTGTGACACAGGCATGTCTTTAGCCGTGT
*
67955766 GAAACACACGGCCGGGCCACAC
128 GAAACACACGGCCAGGCCACAC
67955788 AGGCGTGTGA
Statistics
Matches: 128, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
150 4 0.03
151 71 0.55
152 52 0.41
153 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (152 bp):
TGTGTGTGTTGGCCGTGTGACCCAAGTCAGAGAGTTACAAGAGGTCAGACACGGGCTGGGACACG
ACCATGTGCTTCCACTTTGAATATCCACACAGCCTGTGACACAGGCATGTCTTTAGCCGTGTGAA
ACACACGGCCAGGCCACACCTA
Found at i:67957561 original size:40 final size:40
Alignment explanation
Indices: 67957478--67957634 Score: 149
Period size: 40 Copynumber: 4.0 Consensus size: 40
67957468 TTCGAATGAT
* * * * *
67957478 ATCCGGGCTAAG-TCCCAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGC-GAGTTACTAA
* *
67957517 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
67957557 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
67957597 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
67957635 GTAACCGGGC
Statistics
Matches: 95, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 12 0.13
40 78 0.82
41 5 0.05
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Done.