Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 219 of 433
Found at i:67957655 original size:80 final size:80
Alignment explanation
Indices: 67957478--67957664 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
67957468 TTCGAATGAT
* *
67957478 ATCCGGGCTAAGTCCC-AAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
67957542 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
67957557 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
67957618 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
67957638 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
67957665 ATGTGTAGCC
Statistics
Matches: 90, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
79 15 0.17
80 66 0.73
81 9 0.10
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:67959383 original size:30 final size:30
Alignment explanation
Indices: 67959347--67959406 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
67959337 AGCTAGTAGA
67959347 ACTCAACTTTTATATTTTATGCAATTTGGT
1 ACTCAACTTTTATATTTTATGCAATTTGGT
67959377 ACTCAACTTTTATATTTTATGCAATTTGGT
1 ACTCAACTTTTATATTTTATGCAATTTGGT
67959407 CTTTTCTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (30 bp):
ACTCAACTTTTATATTTTATGCAATTTGGT
Found at i:67959627 original size:19 final size:17
Alignment explanation
Indices: 67959587--67959628 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
67959577 TGTGTCTCAG
67959587 CTGTGTGAGTCACACGA
1 CTGTGTGAGTCACACGA
67959604 CTGTGTGAGTCACACGA
1 CTGTGTGAGTCACACGA
67959621 CTGTGTGA
1 CTGTGTGA
67959629 CCCCTACAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.26
Consensus pattern (17 bp):
CTGTGTGAGTCACACGA
Found at i:67962822 original size:45 final size:45
Alignment explanation
Indices: 67962738--67962892 Score: 242
Period size: 45 Copynumber: 3.5 Consensus size: 45
67962728 CGGTATTTCA
* ** *
67962738 CCTGCTAGGCTCGAA-GCCCG-ATAACATTTCACCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
67962781 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
*
67962826 CATGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
*
67962871 CCTGCAAGGCTCAAAGGCCCGA
1 CCTGCTAGGCTCAAAGGCCCGA
67962893 CTAATACTGT
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
43 14 0.14
44 5 0.05
45 84 0.82
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (45 bp):
CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAG
Found at i:67963763 original size:47 final size:46
Alignment explanation
Indices: 67963707--67963848 Score: 230
Period size: 47 Copynumber: 3.0 Consensus size: 46
67963697 GAAATTTTCT
*
67963707 TTAACTAAGTAACTTATCCGGAAATAATAAGGGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGG-AAATTTAACAAGC
*
67963754 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAAGAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGG-AAATTTAACAAGC
* *
67963801 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGGGAAATTTAACAAGC
67963847 TT
1 TT
67963849 TAAATTCAAC
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 13 0.15
47 76 0.85
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (46 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGGGAAATTTAACAAGC
Found at i:67967110 original size:64 final size:62
Alignment explanation
Indices: 67967029--67967207 Score: 188
Period size: 67 Copynumber: 2.9 Consensus size: 62
67967019 AGACATTATG
*
67967029 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC--GAGAT
* * * * *
67967093 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
* * *
67967158 A---A-CTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
67967208 CGAACTATAT
Statistics
Matches: 97, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
57 1 0.01
58 19 0.20
59 1 0.01
61 18 0.19
62 1 0.01
64 24 0.25
65 6 0.06
66 2 0.02
67 25 0.26
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (62 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGAT
Found at i:67973752 original size:47 final size:48
Alignment explanation
Indices: 67973564--67973788 Score: 310
Period size: 49 Copynumber: 4.7 Consensus size: 48
67973554 GATTCTACGC
* * *
67973564 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTAT-AATATGTGATAAGGCCTAATGGCCAATGT
* *
67973613 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATA-ATATGTGATAAGGCCTAATGGCCAATGT
*
67973662 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAAAGTGTATA-ATATGTGATAAGGCCTAATGGCCAATGT
* * * *
67973711 GATGAATGTGAAAGTGTAT-ATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATAATATGTGATAAGGCCTAATGGCCAATGT
*
67973758 GATGGATGTGAAAGTGTATAA-ATGTGATAAG
1 GATGAATGTGAAAGTGTATAATATGTGATAAG
67973789 TCCCGAAGGG
Statistics
Matches: 163, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
47 51 0.31
48 2 0.01
49 110 0.67
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (48 bp):
GATGAATGTGAAAGTGTATAATATGTGATAAGGCCTAATGGCCAATGT
Found at i:67978428 original size:45 final size:45
Alignment explanation
Indices: 67978352--67978550 Score: 235
Period size: 45 Copynumber: 4.5 Consensus size: 45
67978342 ATTTCACCTA
* *
67978352 CTAGGCTCGAA-GCCCG-ATA-TCATTTCACCGGCATTATAGCTTG
1 CTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGCATTATAGCTTG
* * *
67978395 CTAGGCTCAAAGGCCCAAATAGTATCTCACCGGCTTTATAGCTTT
1 CTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCTTG
** **
67978440 CTAGGCTCAAAGGCTTGAATAGTATCTCACTTGCATTATAG-TCTG
1 CTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCT-TG
* * * *
67978485 CTAGGCTCAAAAGCCCGAATAATATCTCACCGACATTATAGCCTG
1 CTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCTTG
67978530 CTAGGCTCAAAGGCCCGAATA
1 CTAGGCTCAAAGGCCCGAATA
67978551 ATACTGTGCG
Statistics
Matches: 130, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
43 10 0.08
44 5 0.04
45 114 0.88
46 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (45 bp):
CTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCTTG
Found at i:67979044 original size:2 final size:2
Alignment explanation
Indices: 67979037--67979062 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
67979027 TCATATTTTC
67979037 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
67979063 CTTTACCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67979389 original size:47 final size:47
Alignment explanation
Indices: 67979333--67979471 Score: 217
Period size: 47 Copynumber: 3.0 Consensus size: 47
67979323 AAAATTTTCT
** *
67979333 TTAACTAAGTAACTTATCCGGAAATAATAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCTAGAAATATTAAGGGCAAATTTAACAAGC
67979380 TTAACTAAGTAACTTATCTAGAAATATTAAGGGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCTAGAAATATTAAGGGCAAATTTAACAAGC
* * *
67979427 ATAACTAAGTAACTTATCTAGAAATATTAAGAG-TAATTTAACAAG
1 TTAACTAAGTAACTTATCTAGAAATATTAAGGGCAAATTTAACAAG
67979472 TTTTAAATTC
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
46 11 0.13
47 75 0.87
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCTAGAAATATTAAGGGCAAATTTAACAAGC
Found at i:67986729 original size:36 final size:34
Alignment explanation
Indices: 67986629--67986729 Score: 105
Period size: 34 Copynumber: 2.9 Consensus size: 34
67986619 CTTCGTTTGC
** *
67986629 ATACTG-TACTGAAATTGGATAAGGCCCAAACTG
1 ATACTGTTACTGAAAAAGGCTAAGGCCCAAACTG
* * * *
67986662 CTTCTGTTACTGAAATAGGCTCAGGCCCAAACTG
1 ATACTGTTACTGAAAAAGGCTAAGGCCCAAACTG
*
67986696 ATACTTTTACTGAAAAAGGGGCTAAGGCCCAAAC
1 ATACTGTTACTGAAAAA--GGCTAAGGCCCAAAC
67986730 CGGAACTAAC
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
33 4 0.07
34 37 0.67
36 14 0.25
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (34 bp):
ATACTGTTACTGAAAAAGGCTAAGGCCCAAACTG
Found at i:67998039 original size:15 final size:15
Alignment explanation
Indices: 67998019--67998054 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
67998009 AAATAATAAT
67998019 ATAATAACAATAACA
1 ATAATAACAATAACA
*
67998034 ATAATAACAATAATA
1 ATAATAACAATAACA
67998049 ATAATA
1 ATAATA
67998055 CTAAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.25
Consensus pattern (15 bp):
ATAATAACAATAACA
Found at i:67998072 original size:3 final size:3
Alignment explanation
Indices: 67998010--67998054 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
67998000 AATGGGTGAA
* * *
67998010 AAT AAT AAT -AT AAT AAC AAT AAC AAT AAT AAC AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
67998055 CTAAATTTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:67998103 original size:21 final size:22
Alignment explanation
Indices: 67998056--67998103 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
67998046 ATAATAATAC
*
67998056 TAAATTTTATATAATAAAGTTT
1 TAAATTTTATATAATAAAATTT
67998078 T-AATTTT-TAT-ATAAATATTT
1 TAAATTTTATATAATAAA-ATTT
67998098 TAAATT
1 TAAATT
67998104 ATAAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 5 0.22
20 7 0.30
21 10 0.43
22 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TAAATTTTATATAATAAAATTT
Found at i:67999179 original size:10 final size:10
Alignment explanation
Indices: 67999150--67999187 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
67999140 AGATTTATTA
67999150 TTATATATAT
1 TTATATATAT
*
67999160 TTGA-AAATAT
1 TT-ATATATAT
67999170 TTATATATAT
1 TTATATATAT
67999180 TTATATAT
1 TTATATAT
67999188 TTCTTTGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 1 0.04
10 22 0.92
11 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (10 bp):
TTATATATAT
Found at i:68005466 original size:49 final size:49
Alignment explanation
Indices: 68005413--68005627 Score: 403
Period size: 49 Copynumber: 4.4 Consensus size: 49
68005403 ATACATGTAG
68005413 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
68005462 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
68005511 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
68005560 TGTGATAAGGCCCAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
68005609 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
68005628 TAATGCAAGA
Statistics
Matches: 161, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 161 1.00
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:68005779 original size:37 final size:37
Alignment explanation
Indices: 68005729--68005850 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
68005719 GGAATATGTT
*
68005729 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
68005766 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
68005803 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
68005840 CCGGGTAAGAC
1 CCGGGTAAGAC
68005851 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:68009412 original size:21 final size:20
Alignment explanation
Indices: 68009388--68009426 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
68009378 AGTATTTTTT
*
68009388 ATGTTTAATGATAGATTATGA
1 ATGTCTAATGATAG-TTATGA
*
68009409 ATGTCTGATGATAGTTAT
1 ATGTCTAATGATAGTTAT
68009427 ACAAGATTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.44
Consensus pattern (20 bp):
ATGTCTAATGATAGTTATGA
Found at i:68013299 original size:67 final size:69
Alignment explanation
Indices: 68013225--68013376 Score: 181
Period size: 67 Copynumber: 2.3 Consensus size: 69
68013215 ATCATGTGTG
* * * *
68013225 CAAGAGAGCTACGAGATATTATGATGTAGCTAGGTCGCATG-GT-GATACTA-TG-TGTACACCA
1 CAAGAGAGCTATGAGATA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCA
68013286 TGTAGA
64 TGTAGA
* * *
68013292 CAAGAGAGCTATG-G-GATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATG
1 CAAGAGAGCTATGAGATATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATG
68013355 TAGA
66 TAGA
68013359 CAAGAGAGCTATGAGATA
1 CAAGAGAGCTATGAGATA
68013377 AACTAGCTAG
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
63 18 0.25
64 5 0.07
65 5 0.07
66 3 0.04
67 38 0.54
68 1 0.01
69 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (69 bp):
CAAGAGAGCTATGAGATATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATG
TAGA
Found at i:68014835 original size:46 final size:46
Alignment explanation
Indices: 68014782--68014957 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
68014772 TATTTGGGCA
68014782 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
68014828 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
68014875 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
68014921 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68014958 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:68014937 original size:93 final size:93
Alignment explanation
Indices: 68014778--68014949 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68014768 GGGATATTTG
* *
68014778 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68014843 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
68014871 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68014936 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
68014950 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68019791 original size:40 final size:40
Alignment explanation
Indices: 68019731--68019894 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
68019721 CGGGATTCAA
* ** *
68019731 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
68019771 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
68019811 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * * *
68019851 CCGGATATAATC-ACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
68019891 CCGG
1 CCGG
68019895 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 99 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:68019878 original size:80 final size:80
Alignment explanation
Indices: 68019731--68019894 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 80
68019721 CGGGATTCAA
* * ** * *
68019731 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
* *
68019796 CCTTCGGGTCTTAGC
66 CCTTCGAGACTTAGC
** * * *
68019811 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
68019875 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
68019891 CCGG
1 CCGG
68019895 GTATCATTCA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
80 68 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:68027901 original size:40 final size:40
Alignment explanation
Indices: 68027841--68028004 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
68027831 CGGGATTCAA
* ** *
68027841 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
68027881 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
68027921 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * * *
68027961 CCGGATATAATC-ACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
68028001 CCGG
1 CCGG
68028005 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 99 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:68027988 original size:80 final size:80
Alignment explanation
Indices: 68027841--68028004 Score: 195
Period size: 80 Copynumber: 2.0 Consensus size: 80
68027831 CGGGATTCAA
* * ** * *
68027841 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
* *
68027906 CCTTCGGGTCTTAGC
66 CCTTCGAGACTTAGC
** * * *
68027921 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
68027985 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTTAGC
68028001 CCGG
1 CCGG
68028005 GTATCATTCA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
80 68 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGAGACTTAGC
Found at i:68030337 original size:27 final size:26
Alignment explanation
Indices: 68030297--68030367 Score: 115
Period size: 27 Copynumber: 2.7 Consensus size: 26
68030287 CCAAATTGAT
68030297 AAATGACTTTTTGCCCTTATGTGGTA
1 AAATGACTTTTTGCCCTTATGTGGTA
*
68030323 AAATGATTGTTTTGCCCTTATGTGGTA
1 AAATGACT-TTTTGCCCTTATGTGGTA
68030350 AAATGACTATTTTGCCCT
1 AAATGACT-TTTTGCCCT
68030368 ACTGTTTTAC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 7 0.17
27 34 0.83
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (26 bp):
AAATGACTTTTTGCCCTTATGTGGTA
Found at i:68031739 original size:50 final size:52
Alignment explanation
Indices: 68031622--68031752 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 52
68031612 TGAACAGATA
* * * *
68031622 AGTTACTTAATGCATGACTTAATTTAATTATGCAAACTTTAACTAACATGAG
1 AGTTACATAATGCATGACATAATTTAATGATGCAAACTTGAACTAACATGAG
* * *
68031674 AGTTGCATAAAGCATGTCATAATTT-ATGATGCAAACTTGAA-TAACATGAG
1 AGTTACATAATGCATGACATAATTTAATGATGCAAACTTGAACTAACATGAG
* * *
68031724 AGTTATATAATGCATGACTTTATTTAATG
1 AGTTACATAATGCATGACATAATTTAATG
68031753 CAAAACACAT
Statistics
Matches: 65, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
50 28 0.43
51 17 0.26
52 20 0.31
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (52 bp):
AGTTACATAATGCATGACATAATTTAATGATGCAAACTTGAACTAACATGAG
Found at i:68031800 original size:34 final size:36
Alignment explanation
Indices: 68031749--68031819 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
68031739 GACTTTATTT
* *
68031749 AATGCAAAACACATAATG-CATGTCATAATTAAAAA
1 AATGCAAAACACATAATGACAAGACATAATTAAAAA
*
68031784 AATGC-AAACACTTAATGATCAAGACATAATTAAAAA
1 AATGCAAAACACATAATGA-CAAGACATAATTAAAAA
68031820 TGTAAAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
34 11 0.35
35 5 0.16
36 15 0.48
ACGTcount: A:0.55, C:0.14, G:0.08, T:0.23
Consensus pattern (36 bp):
AATGCAAAACACATAATGACAAGACATAATTAAAAA
Found at i:68034175 original size:26 final size:26
Alignment explanation
Indices: 68034118--68034279 Score: 215
Period size: 26 Copynumber: 6.3 Consensus size: 26
68034108 CTGGAGGCCT
68034118 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* *
68034142 AGCCCTTTTCAGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
68034168 AGCCCTTTTCAATAAAATAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
68034194 AGCTCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
68034220 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
68034246 AGCCCTTTTCAATAAACTTGGGCAT-
1 AGCCCTTTTCAATAAACTGGGGCATA
68034271 AGCCCTTTT
1 AGCCCTTTT
68034280 GCACTTCCTC
Statistics
Matches: 122, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.04
24 6 0.05
25 18 0.15
26 93 0.76
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:68034235 original size:78 final size:74
Alignment explanation
Indices: 68034121--68034279 Score: 237
Period size: 78 Copynumber: 2.1 Consensus size: 74
68034111 GAGGCCTAGC
68034121 CTCTTTTAATAACTGGGGCAAAGCCCTTTTCAGTAAACTAGGGCATAAGCCCTTTTCAATAAAAT
1 CTCTTTTAATAACTGGGGCAAAGCCCTTTTCAGTAAACTAGGGCATAAGCCCTTTTCAATAAAAT
68034186 AGGGCATAAG
66 AGGGCAT-AG
* *
68034196 CTCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAA
1 CTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCAGTAAACTAGGGCATAAGCCCTTTTCAATAA
* *
68034261 ACTTGGGCATAG
63 AATAGGGCATAG
*
68034273 CCCTTTT
1 CTCTTTT
68034280 GCACTTCCTC
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
75 7 0.09
76 3 0.04
77 18 0.24
78 48 0.63
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (74 bp):
CTCTTTTAATAACTGGGGCAAAGCCCTTTTCAGTAAACTAGGGCATAAGCCCTTTTCAATAAAAT
AGGGCATAG
Found at i:68034360 original size:11 final size:11
Alignment explanation
Indices: 68034329--68034384 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
68034319 TTATGATTAC
68034329 ATCATGTGCAT
1 ATCATGTGCAT
* *
68034340 TTCA--TACAT
1 ATCATGTGCAT
68034349 ATCATGTGCAT
1 ATCATGTGCAT
*
68034360 ATCA--TACAT
1 ATCATGTGCAT
68034369 ATCATGTGCAT
1 ATCATGTGCAT
68034380 ATCAT
1 ATCAT
68034385 ATCATTCATT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:68034387 original size:5 final size:5
Alignment explanation
Indices: 68034341--68034405 Score: 57
Period size: 5 Copynumber: 13.4 Consensus size: 5
68034331 CATGTGCATT
* *
68034341 TCATA -CATA TCATG TGCATA TCATA -CATA TCATG TGCATA TCATA TCAT-
1 TCATA TCATA TCATA T-CATA TCATA TCATA TCATA T-CATA TCATA TCATA
*
68034390 TCAT- TTATA TCATA TC
1 TCATA TCATA TCATA TC
68034406 CCACGTATCA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
4 15 0.31
5 26 0.53
6 8 0.16
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.40
Consensus pattern (5 bp):
TCATA
Found at i:68034393 original size:20 final size:20
Alignment explanation
Indices: 68034329--68034385 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
68034319 TTATGATTAC
*
68034329 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
68034349 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
68034369 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
68034386 TCATTCATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:68041593 original size:28 final size:29
Alignment explanation
Indices: 68041495--68041593 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
68041485 TCACAAATTG
* *
68041495 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
68041524 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
68041552 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
68041580 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68041594 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:68058843 original size:15 final size:15
Alignment explanation
Indices: 68058823--68058891 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
68058813 GTATCTTGGG
68058823 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
68058838 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
68058853 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
68058868 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
68058883 TTTCTTTAT
1 TTTCTTTAT
68058892 TCAGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:68058892 original size:30 final size:30
Alignment explanation
Indices: 68058814--68058893 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
68058804 CATAGTATCG
* * *
68058814 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
68058844 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
68058874 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
68058894 AGTTTTCTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:68063969 original size:47 final size:47
Alignment explanation
Indices: 68063915--68064014 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 47
68063905 TTAGGATTTT
* * *
68063915 ATGTGATGAATGTGAACGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
* * * *
68063962 ATGTGATGATTGTGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
68064009 ATGTGA
1 ATGTGA
68064015 AATATATATA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAAGCCGAATGGCCA
Found at i:68064138 original size:50 final size:50
Alignment explanation
Indices: 68063984--68064119 Score: 263
Period size: 50 Copynumber: 2.7 Consensus size: 50
68063974 TGAACATGCA
68063984 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
68064034 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
*
68064084 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
68064120 GTAGGCGATG
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 85 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (50 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
Found at i:68064414 original size:37 final size:37
Alignment explanation
Indices: 68064269--68064413 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
68064259 GGAAATATAT
*
68064269 TCCGGGTAAGGCCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
68064306 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
68064343 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
68064380 TCCGGGTAAGACCCGATAACCT-CGTGTGGAGATT
1 TCCGGGTAAGACCCGATGA-CTACGTGTGGAGATT
68064414 TCGTCTGAGC
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
37 100 0.98
38 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:68065607 original size:46 final size:44
Alignment explanation
Indices: 68065553--68065729 Score: 167
Period size: 46 Copynumber: 3.9 Consensus size: 44
68065543 ATATTTGGGC
68065553 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *** * *
68065597 ATGTCCGAACTTGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* *
68065646 ATCCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* * * *
68065691 CACCCGAGCTCGTTGAGTTTAGCCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68065730 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 18, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:68065709 original size:93 final size:93
Alignment explanation
Indices: 68065550--68065721 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
68065540 AGGATATTTG
*** *
68065550 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
*
68065615 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGCCCGAGTTCGAGAGATGTAACTA
* * *
68065643 GGCATCCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
*
68065708 TTTAGCCCGAGTTC
66 TTGAGCCCGAGTTC
68065722 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGCCCGAGTTCGAGAGATGTAACTA
Found at i:68073667 original size:8 final size:8
Alignment explanation
Indices: 68073654--68073679 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
68073644 TTCGGTCAAA
68073654 ATATGAAC
1 ATATGAAC
68073662 ATATGAAC
1 ATATGAAC
68073670 ATATGAAC
1 ATATGAAC
68073678 AT
1 AT
68073680 GGCTTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.27
Consensus pattern (8 bp):
ATATGAAC
Found at i:68075963 original size:71 final size:71
Alignment explanation
Indices: 68075879--68076042 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
68075869 CGATTTGTCT
68075879 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68075944 CTTTCA
66 CTTTCA
68075950 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68076015 CTTTCA
66 CTTTCA
68076021 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
68076043 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:68076080 original size:71 final size:70
Alignment explanation
Indices: 68075879--68076076 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
68075869 CGATTTGTCT
* * * *
68075879 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
68075944 CTTTCA
65 CTTTCA
* * * *
68075950 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
68076015 CTTTCA
65 CTTTCA
* *
68076021 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
68076077 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:68083670 original size:46 final size:45
Alignment explanation
Indices: 68083517--68083657 Score: 135
Period size: 46 Copynumber: 3.1 Consensus size: 45
68083507 TACCATGTAA
* *
68083517 CCCACCCATAAGTGAACTCGGACTCAACTCAACGAGCTT-AG-ATG
1 CCCATCCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGAATG
* * *** *
68083561 CCTAGTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATT
1 CCCA--TCCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGA-ATG
*
68083610 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATG
1 CCCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATG
68083654 CCCA
1 CCCA
68083658 AATATCCTAG
Statistics
Matches: 75, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
44 8 0.11
46 34 0.45
47 29 0.39
49 4 0.05
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.21
Consensus pattern (45 bp):
CCCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATG
Found at i:68086946 original size:90 final size:90
Alignment explanation
Indices: 68086817--68086993 Score: 302
Period size: 90 Copynumber: 2.0 Consensus size: 90
68086807 TAGGGACAAT
68086817 TTGATTGAGATTGAATGATGATTGTATGTATTGATTAAATGTATAGGAAAAGTATGTTTAAATGT
1 TTGATTGAGATTGAATGATGATTGTATGTATTGATTAAATGTATAGGAAAAGTATGTTTAAATGT
*
68086882 GTTATAAGT-TCGGTAATGCTCCATA
66 GTTATAAGTCT-GATAATGCTCCATA
* *
68086907 TTGATTGAGATTGAATGATTATTGTATGTATTGATTAAATGTATGGGAAAAGTATGTTTAAATGT
1 TTGATTGAGATTGAATGATGATTGTATGTATTGATTAAATGTATAGGAAAAGTATGTTTAAATGT
*
68086972 GTTGTAAGTCTGATAATGCTCC
66 GTTATAAGTCTGATAATGCTCC
68086994 GTAACCCTAT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
90 81 0.99
91 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.41
Consensus pattern (90 bp):
TTGATTGAGATTGAATGATGATTGTATGTATTGATTAAATGTATAGGAAAAGTATGTTTAAATGT
GTTATAAGTCTGATAATGCTCCATA
Found at i:68091347 original size:50 final size:48
Alignment explanation
Indices: 68091216--68091398 Score: 222
Period size: 50 Copynumber: 3.7 Consensus size: 48
68091206 TATGTAGCTA
* * * *
68091216 GGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCGATAA--TT
* *
68091267 GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAATT
* * *
68091316 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAATT
*
68091366 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
68091399 TGCGTACTAG
Statistics
Matches: 115, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
49 32 0.28
50 45 0.39
51 38 0.33
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (48 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATAATT
Found at i:68091411 original size:99 final size:100
Alignment explanation
Indices: 68091227--68091414 Score: 265
Period size: 99 Copynumber: 1.9 Consensus size: 100
68091217 GTCGCATGTA
* *
68091227 TAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTTTGATCACATGTGTAGTACTAAGTGCA
1 TAGTACTAAGTGCAAGCTACTACGCGTACTCGATAAC-TTGATCACATGTGTAGTACTAAGTGCA
*
68091292 GGCTACTACGTGTATCAGATAGTTAGGTCACGTGTG
65 GGCTACTACGCGTATCAGATAGTTAGGTCACGTGTG
* * *
68091328 TAGTACTAAGTGCAAGCTACTACGTGTAC-CGGATAA-TTGGTCGCATGTGTAGTACTAAGTGCA
1 TAGTACTAAGTGCAAGCTACTACGCGTACTC-GATAACTTGATCACATGTGTAGTACTAAGTGCA
*
68091391 GGCTACTATGCGTA-CTAGATAGTT
65 GGCTACTACGCGTATC-AGATAGTT
68091415 TGGCTACATA
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
98 1 0.01
99 45 0.58
100 1 0.01
101 31 0.40
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TAGTACTAAGTGCAAGCTACTACGCGTACTCGATAACTTGATCACATGTGTAGTACTAAGTGCAG
GCTACTACGCGTATCAGATAGTTAGGTCACGTGTG
Found at i:68091769 original size:36 final size:36
Alignment explanation
Indices: 68091722--68091794 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
68091712 AAAAAGTGTG
68091722 AAAGAGTGAATTAGCAATAAAACTGTTTTGGACAGT
1 AAAGAGTGAATTAGCAATAAAACTGTTTTGGACAGT
68091758 AAAGAGTGAATTAGCAATAAAACTGTTTTGGACAGT
1 AAAGAGTGAATTAGCAATAAAACTGTTTTGGACAGT
68091794 A
1 A
68091795 CCAGTGACAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.27
Consensus pattern (36 bp):
AAAGAGTGAATTAGCAATAAAACTGTTTTGGACAGT
Found at i:68091778 original size:18 final size:18
Alignment explanation
Indices: 68091722--68091778 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
68091712 AAAAAGTGTG
68091722 AAAGAGTGAATTAGCAAT
1 AAAGAGTGAATTAGCAAT
* ** * *
68091740 AAA-ACTGTTTTGGACAGT
1 AAAGAGTGAATTAG-CAAT
68091758 AAAGAGTGAATTAGCAAT
1 AAAGAGTGAATTAGCAAT
68091776 AAA
1 AAA
68091779 ACTGTTTTGG
Statistics
Matches: 27, Mismatches: 10, Indels: 4
0.66 0.24 0.10
Matches are distributed among these distances:
17 6 0.22
18 15 0.56
19 6 0.22
ACGTcount: A:0.47, C:0.07, G:0.21, T:0.25
Consensus pattern (18 bp):
AAAGAGTGAATTAGCAAT
Found at i:68094454 original size:40 final size:39
Alignment explanation
Indices: 68094373--68094518 Score: 148
Period size: 40 Copynumber: 3.7 Consensus size: 39
68094363 CCGCACCAAG
* * * * * * *
68094373 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC-AAT
* * *
68094413 GCCTTCGGGTCTTAGCTCGGATTTAACAACTGGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC-AAT
* *
68094453 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAA-T
*
68094493 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
68094519 TTTTCAGCAT
Statistics
Matches: 88, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 2 0.02
40 86 0.98
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAT
Found at i:68101617 original size:40 final size:39
Alignment explanation
Indices: 68101536--68101681 Score: 157
Period size: 40 Copynumber: 3.7 Consensus size: 39
68101526 CCGCACCAAG
* * * * * * *
68101536 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC-AAT
* *
68101576 GCCTTCGGGTCTTAGCCCGGATTTAACAACTGGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCAC-AAT
* *
68101616 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAA-T
*
68101656 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
68101682 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 88 0.98
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAT
Found at i:68101696 original size:40 final size:40
Alignment explanation
Indices: 68101568--68101719 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
68101558 ATCACGATTT
* * * * *
68101568 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTG
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
68101608 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
68101648 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
68101688 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
68101720 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:68104345 original size:25 final size:25
Alignment explanation
Indices: 68104311--68104362 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
68104301 GAAGGCATTT
*
68104311 GTGCGAGTTACTATATTCGGGCTAA
1 GTGCGAGTTACTATATCCGGGCTAA
68104336 GTGCGAGTTACTATATCCGGGCTAA
1 GTGCGAGTTACTATATCCGGGCTAA
68104361 GT
1 GT
68104363 CCCGAAGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (25 bp):
GTGCGAGTTACTATATCCGGGCTAA
Found at i:68104396 original size:40 final size:40
Alignment explanation
Indices: 68104336--68104529 Score: 250
Period size: 40 Copynumber: 4.9 Consensus size: 40
68104326 TTCGGGCTAA
*
68104336 GTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTG
1 GTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
*
68104376 GTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
1 GTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
* * *
68104416 GCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 GTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
* *
68104456 GTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTC
1 GTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
* * * *
68104496 GAGCAAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 GTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
68104530 TACTTGGCTT
Statistics
Matches: 135, Mismatches: 16, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
39 16 0.12
40 118 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
Found at i:68112047 original size:29 final size:29
Alignment explanation
Indices: 68112015--68112092 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
68112005 ATACCCTCCG
** *
68112015 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
68112044 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
68112073 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
68112093 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:68113993 original size:29 final size:29
Alignment explanation
Indices: 68113961--68114033 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
68113951 CTTCGAGCTC
*
68113961 GCACACCCAGTGCCTTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
68113990 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
68114019 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
68114034 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:68122497 original size:29 final size:29
Alignment explanation
Indices: 68122465--68122537 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
68122455 CTTCGAGCTC
*
68122465 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
68122494 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
68122523 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
68122538 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:68136391 original size:19 final size:20
Alignment explanation
Indices: 68136367--68136407 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
68136357 ACGCGCAAAG
* *
68136367 TTTCCAA-AAAGTAAATGTT
1 TTTCCAAGAAAATAAATATT
68136386 TTTCCAAGAAAATAAATATT
1 TTTCCAAGAAAATAAATATT
68136406 TT
1 TT
68136408 AAGCAAACGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (20 bp):
TTTCCAAGAAAATAAATATT
Found at i:68150362 original size:68 final size:64
Alignment explanation
Indices: 68150140--68150371 Score: 184
Period size: 68 Copynumber: 3.5 Consensus size: 64
68150130 CACATGGAGA
* * * * *
68150140 ACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGTAGCTCTCTTGTCTACATGGTGT
1 ACACATAGCACCACACATGTGACCTAGCTACA-TATATCTCGTAGCTCTCTTGTCTACATGATG-
68150203 CCT
64 --T
* * * * * *
68150206 TCACCTGGAACCACGCATGTGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGGTGT
1 ACACATAGCACCACACATGTGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGATGT
* * * * *
68150270 ACACATAGTATCACCCATGAGACCTAACTACATCATAATGTCTCGTAGCTCTCTTGTAC-ACATG
1 ACACATAGCACCACACATGTGACCTAGCTACAT-AT-A--TCTCGTAGCTCTCTTGT-CTACATG
68150334 ATGT
61 ATGT
* *
68150338 GCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 ACACAT-AGCACCACACATGTGACCTAGCTACATA
68150372 CCATCTGTAT
Statistics
Matches: 136, Mismatches: 22, Indels: 15
0.79 0.13 0.09
Matches are distributed among these distances:
64 26 0.19
65 2 0.01
66 24 0.18
67 32 0.24
68 51 0.38
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (64 bp):
ACACATAGCACCACACATGTGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGATGT
Found at i:68150871 original size:30 final size:30
Alignment explanation
Indices: 68150836--68150896 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
68150826 TCCTTAACTC
*
68150836 AAACTTTGGCAAAATTATAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
68150866 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
68150896 A
1 A
68150897 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:68158881 original size:10 final size:10
Alignment explanation
Indices: 68158866--68158896 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
68158856 CGTGGGAGAT
68158866 ATCGTCATCA
1 ATCGTCATCA
68158876 ATCGTCATCA
1 ATCGTCATCA
68158886 ATCGTCATCA
1 ATCGTCATCA
68158896 A
1 A
68158897 CCAGGTGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.29
Consensus pattern (10 bp):
ATCGTCATCA
Found at i:68160282 original size:39 final size:39
Alignment explanation
Indices: 68160228--68160340 Score: 199
Period size: 39 Copynumber: 2.9 Consensus size: 39
68160218 TTCAGTGATG
*
68160228 TATATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
68160267 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
68160306 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTG
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTG
68160341 AAAATATGTT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:68160367 original size:78 final size:78
Alignment explanation
Indices: 68160228--68160371 Score: 182
Period size: 78 Copynumber: 1.8 Consensus size: 78
68160218 TTCAGTGATG
* * * * * **
68160228 TATATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATATCCGGACTTAAAGTCCGCAGGC
68160293 TATGTGCTGGAAT
66 TATGTGCTGGAAT
* * *
68160306 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATGTTCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATATCCGGACTTAAAGT-CCGCAGG
68160370 CT
65 CT
68160372 TCGAGCTAGT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
77 4 0.07
78 51 0.93
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATATCCGGACTTAAAGTCCGCAGGC
TATGTGCTGGAAT
Found at i:68160386 original size:78 final size:78
Alignment explanation
Indices: 68160228--68160391 Score: 172
Period size: 78 Copynumber: 2.1 Consensus size: 78
68160218 TTCAGTGATG
* * * * * **
68160228 TATATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATATCCGGACTTAAAGTCCGCAGGC
* *
68160293 TATGTGCTGGAAT
66 TATGAGCTAGAAT
* * *
68160306 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATGTTCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATATCCGGACTTAAAGT-CCGCAGG
*
68160370 CT-TCGAGCTAGTAT
65 CTAT-GAGCTAGAAT
68160384 TATA-CCGG
1 TATATCCGG
68160392 GTTTAAATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
77 9 0.13
78 62 0.87
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATATATCCGGACTTAAAGTCCGCAGGC
TATGAGCTAGAAT
Found at i:68161764 original size:13 final size:13
Alignment explanation
Indices: 68161746--68161771 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68161736 ATATTATAAT
68161746 TATTTTATGTTAA
1 TATTTTATGTTAA
68161759 TATTTTATGTTAA
1 TATTTTATGTTAA
68161772 AAATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:68163197 original size:40 final size:40
Alignment explanation
Indices: 68163145--68163390 Score: 397
Period size: 40 Copynumber: 6.2 Consensus size: 40
68163135 AGACTAAGAT
68163145 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
68163185 CCGAAGGAATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
68163225 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
68163265 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
68163305 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
68163345 CCGAAGGCATTTGTGCGAGTTG-CTACATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
68163384 CCGAAGG
1 CCGAAGG
68163391 TACTTGGGTT
Statistics
Matches: 192, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 15 0.08
40 176 0.92
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:68170072 original size:40 final size:40
Alignment explanation
Indices: 68170027--68170156 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
68170017 CGGAATATAA
68170027 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
68170067 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * * *
68170107 CCGGATATAGCCACTTGCACAATTGCCTTTGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
68170147 CCGGATATAA
1 CCGGATATAA
68170157 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
40 73 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:68173142 original size:40 final size:39
Alignment explanation
Indices: 68172977--68173160 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
68172967 AAATTGAATG
* * *
68172977 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
68173017 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
68173057 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
68173097 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
68173136 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
68173161 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:68173185 original size:80 final size:81
Alignment explanation
Indices: 68173017--68173205 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
68173007 GCTGGAAATT
* * * *
68173017 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
68173082 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
68173098 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
68173161 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
68173177 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
68173206 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:68186088 original size:26 final size:28
Alignment explanation
Indices: 68186044--68186095 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
68186034 TACAAGGGTA
68186044 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTACCCTATTAGGGGCT
**
68186071 TTACGGTCTTTTTA-CCTATTAGGGG
1 TTACGGTCACTTTACCCTATTAGGGG
68186096 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (28 bp):
TTACGGTCACTTTACCCTATTAGGGGCT
Found at i:68186170 original size:27 final size:27
Alignment explanation
Indices: 68186140--68186237 Score: 108
Period size: 27 Copynumber: 3.6 Consensus size: 27
68186130 GTAAATCTAC
*
68186140 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
**
68186167 AAACCAATAGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
*
68186193 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
68186223 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
68186238 TGGTAATTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.02
27 33 0.55
28 6 0.10
29 19 0.32
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:68186244 original size:27 final size:27
Alignment explanation
Indices: 68186228--68186353 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
68186218 TTTGTAAATC
68186228 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * * * *
68186254 TGAAGGTCTTTCGGTAATTTCAAAAACT
1 AG-GGGTATTTTGGTAATTTTACAAACT
* *
68186282 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
68186309 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
68186336 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
68186354 CTATCCTACA
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 82 0.96
28 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:68186367 original size:54 final size:54
Alignment explanation
Indices: 68186228--68186383 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 54
68186218 TTTGTAAATC
* * * * *
68186228 AGGGGTATTTTGGTAATTTTACAAA-TTGAAGGTCTTTCGGTAATTTCAAAAACT
1 AGGGGTATTTCGGTAATTCTACAAACTAG-GGGTATTTCGGTAATTTCAAAAACT
* * * * *
68186282 AGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTCGGTAATTTCAAAAACT
* ** *
68186336 AGGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCA
1 AGGGGTATTTCGGTAATTCTA-CAAACTAGGGGTATTTCGGTAATTTCA
68186384 TAATCGAGGG
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 79 0.94
55 5 0.06
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
AGGGGTATTTCGGTAATTCTACAAACTAGGGGTATTTCGGTAATTTCAAAAACT
Found at i:68186501 original size:81 final size:81
Alignment explanation
Indices: 68186373--68186582 Score: 300
Period size: 81 Copynumber: 2.6 Consensus size: 81
68186363 AGGGGTATTT
* * *
68186373 CAGTAATT-TCAT-AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTT
1 CAGTAATTCT-ATAAATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTT
68186435 TGTAAATCGAGGGTAAAA
64 TGTAAATCGAGGGTAAAA
*
68186453 CAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTG
1 CAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTG
*
68186518 TAAATCGAGGGTGAAA
66 TAAATCGAGGGTAAAA
* * * *
68186534 CGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATTGAGGG
1 CAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGG
68186583 CATTTCAGTA
Statistics
Matches: 117, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
80 9 0.08
81 107 0.91
82 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (81 bp):
CAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTG
TAAATCGAGGGTAAAA
Found at i:68186582 original size:27 final size:27
Alignment explanation
Indices: 68186385--68186570 Score: 275
Period size: 27 Copynumber: 6.9 Consensus size: 27
68186375 GTAATTTCAT
*
68186385 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
68186412 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
68186439 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
68186466 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
68186493 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
68186520 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
68186547 AATCGAGGGTAAAATGGTAATTCT
1 AATCGAGGGTAAAACGGTAATTCT
68186571 ACAAATTGAG
Statistics
Matches: 144, Mismatches: 13, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:68188768 original size:46 final size:45
Alignment explanation
Indices: 68188718--68188893 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 45
68188708 TGTTTGGGCA
*
68188718 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
68188764 TCCGAACTCGTTGAGTTGAGTCCTAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
68188811 TCTGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * **
68188857 CCCGAGCTTATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68188894 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.62
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:68191838 original size:15 final size:15
Alignment explanation
Indices: 68191818--68191865 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
68191808 CATAGTATCG
*
68191818 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTT
*
68191833 TATCTTGGATCTCTT
1 TATCTTGGATTTCTT
68191848 TAT-TCTGGATTTCTT
1 TATCT-TGGATTTCTT
68191863 TAT
1 TAT
68191866 TCGGTTTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 1 0.03
15 28 0.97
ACGTcount: A:0.12, C:0.15, G:0.15, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:68191876 original size:14 final size:15
Alignment explanation
Indices: 68191827--68191876 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
68191817 GTATCTTGGG
68191827 TTTCTTTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
68191842 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
68191857 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
68191871 TTTCTT
1 TTTCTT
68191877 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 8 0.26
15 21 0.68
16 2 0.06
ACGTcount: A:0.10, C:0.16, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:68194301 original size:46 final size:45
Alignment explanation
Indices: 68194251--68194424 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
68194241 TGTTTGGGCA
68194251 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
68194297 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
68194344 TCTGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * **
68194389 CCCGAGCTTATTGAGTTGAGTCCGA-TTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68194425 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 16, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 1 0.01
45 32 0.31
46 39 0.38
47 23 0.22
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:68196072 original size:54 final size:55
Alignment explanation
Indices: 68195911--68196082 Score: 224
Period size: 55 Copynumber: 3.2 Consensus size: 55
68195901 GTTACGTACG
* * *
68195911 TGGTATCCTTGACTTAT-G-AACTCACCAATGCCATGCCTTGGCATGGTCTTACA
1 TGGTATCTTTGCCTTATAGTAACTCATCAATGCCATGCCTTGGCATGGTCTTACA
* * * *
68195964 TGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACA
1 TGGTATCTTTGCCTTATAGTAACTCATCAATGCCATGCCTTGGCATGGTCTTACA
** *
68196019 TGGTATCTTTGCCTTATAG-AACTTGTCAATTCCATGCCTTGGCATGGTCTTACA
1 TGGTATCTTTGCCTTATAGTAACTCATCAATGCCATGCCTTGGCATGGTCTTACA
*
68196073 TGATATCTTT
1 TGGTATCTTT
68196083 ATCTTACCAA
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 13 0.13
54 40 0.39
55 49 0.48
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (55 bp):
TGGTATCTTTGCCTTATAGTAACTCATCAATGCCATGCCTTGGCATGGTCTTACA
Found at i:68196118 original size:47 final size:47
Alignment explanation
Indices: 68196061--68196181 Score: 179
Period size: 47 Copynumber: 2.6 Consensus size: 47
68196051 CATGCCTTGG
*
68196061 CATGGTCTTACATGATATCTTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
68196108 CATGGTCTTACATCATATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
** * *
68196155 CATAATCTTACATGGTATCCTTGTCTT
1 CATGGTCTTACATGATATCCTTATCTT
68196182 GGTGCCAATG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:68213751 original size:46 final size:47
Alignment explanation
Indices: 68213645--68213760 Score: 144
Period size: 50 Copynumber: 2.4 Consensus size: 47
68213635 ATGTTTCGAC
** * *
68213645 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
68213695 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
68213741 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
68213761 TCTGACCCGT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 29 0.49
50 30 0.51
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:68224692 original size:40 final size:40
Alignment explanation
Indices: 68224647--68224773 Score: 125
Period size: 40 Copynumber: 3.2 Consensus size: 40
68224637 TCGGAATCAA
*
68224647 CCGGATATAACCACGT-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCAC-AATTGCCTTCGGGTCTTAAC
* *
68224687 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
*** * * * *
68224727 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
68224766 CCGGATAT
1 CCGGATAT
68224774 CATTCAATTT
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.22
40 57 0.78
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
Found at i:68231723 original size:40 final size:40
Alignment explanation
Indices: 68231619--68231742 Score: 124
Period size: 40 Copynumber: 3.1 Consensus size: 40
68231609 CGGAATACAA
**
68231619 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
68231659 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * * *
68231699 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
68231739 CCGG
1 CCGG
68231743 GTATCATTCA
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 2 0.03
40 66 0.97
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:68240317 original size:30 final size:29
Alignment explanation
Indices: 68240223--68240324 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
68240213 TATAGTGAAT
* * *
68240223 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
68240252 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
68240280 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
68240310 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
68240325 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:68248178 original size:30 final size:29
Alignment explanation
Indices: 68248084--68248185 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
68248074 TATAGTGAAT
* * *
68248084 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
68248113 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
68248141 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
68248171 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
68248186 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:68252113 original size:43 final size:43
Alignment explanation
Indices: 68252043--68252166 Score: 137
Period size: 43 Copynumber: 2.9 Consensus size: 43
68252033 TCTGAACTCA
* *
68252043 TTCACAGGCATT-TCGCTTGCTAGGCTTGAAG-CTCGATATCAT
1 TTCACAGGCATTATAGCCTGCTAGGCTTGAAGCCT-GATATCAT
* *
68252085 TTCACTGGCATTATAGCCTGCTAGGCTTGAAGCCTGATATTAT
1 TTCACAGGCATTATAGCCTGCTAGGCTTGAAGCCTGATATCAT
* * **
68252128 CTCACCA-GCATTATAGCCTGCTTGGCCCGAAGCCTGATA
1 TTCA-CAGGCATTATAGCCTGCTAGGCTTGAAGCCTGATA
68252167 ATATTATTCA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
42 11 0.16
43 56 0.80
44 3 0.04
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (43 bp):
TTCACAGGCATTATAGCCTGCTAGGCTTGAAGCCTGATATCAT
Found at i:68257977 original size:40 final size:40
Alignment explanation
Indices: 68257725--68257970 Score: 381
Period size: 40 Copynumber: 6.2 Consensus size: 40
68257715 AACCCAAGTA
*
68257725 CCTTCGGGATTTAG-CCGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATG
* * *
68257764 CCTTTGGGACTTAGCCCGGATATAGTAACCAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
**
68257804 CCTTCGGGACTTAGCCTAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68257844 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
68257884 CCTTCGGGACTTAGCCCAGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68257924 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68257964 CCTTCGG
1 CCTTCGG
68257971 ACCTTAGTCC
Statistics
Matches: 189, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 13 0.07
40 176 0.93
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:68260904 original size:46 final size:46
Alignment explanation
Indices: 68260851--68261026 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
68260841 TATTTGGGCA
68260851 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
68260897 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
68260944 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
68260990 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68261027 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:68261006 original size:93 final size:93
Alignment explanation
Indices: 68260847--68261018 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68260837 GGGATATTTG
* *
68260847 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68260912 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
68260940 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68261005 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
68261019 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68268645 original size:39 final size:39
Alignment explanation
Indices: 68268591--68268832 Score: 364
Period size: 39 Copynumber: 6.2 Consensus size: 39
68268581 AACCCAAGTA
* *
68268591 CCTTCGGGATTTAGCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAATG
* * *
68268630 CCTTCGGGACTTAGCCCGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATG
68268669 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTCACTAGCACAAATG
*
68268709 CCTTCGGGACTTAGCC-CATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATG
*
68268747 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATG
68268787 CCTT-GGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATG
68268826 CCTTCGG
1 CCTTCGG
68268833 ATCTTAGTCC
Statistics
Matches: 186, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
38 35 0.19
39 89 0.48
40 62 0.33
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATG
Found at i:68268839 original size:117 final size:119
Alignment explanation
Indices: 68268591--68268839 Score: 402
Period size: 117 Copynumber: 2.1 Consensus size: 119
68268581 AACCCAAGTA
* *
68268591 CCTTCGGGAT-TTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGATATAGT
1 CCTTCGGGATCTTAGCCGCATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGATATAGT
* *
68268655 AACTAGCACAGATGCCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68268709 CCTTCGGGA-CTTAGCC-CATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGATCTTAGCCGCATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCC-GATATA
68268771 GTAACTAGCACAAATGCCTT-GGGACTTAGCCCGGATATAGTCACTAGCACAAATG
64 GTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68268826 CCTTC-GGATCTTAG
1 CCTTCGGGATCTTAG
68268840 TCCGGTTATC
Statistics
Matches: 123, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
116 3 0.02
117 79 0.64
118 41 0.33
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (119 bp):
CCTTCGGGATCTTAGCCGCATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGATATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:68270227 original size:13 final size:13
Alignment explanation
Indices: 68270209--68270234 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68270199 ATTTTTATTT
68270209 TTAACATAAAATA
1 TTAACATAAAATA
68270222 TTAACATAAAATA
1 TTAACATAAAATA
68270235 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:68271236 original size:24 final size:24
Alignment explanation
Indices: 68271191--68271237 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
68271181 ATGTGGAGGG
* *
68271191 AATCAATGAGAGGATTGGGGAGAA
1 AATCAAGGAGAGGATTAGGGAGAA
*
68271215 AATCAAGGAGAGGATTATGGAGA
1 AATCAAGGAGAGGATTAGGGAGA
68271238 TATTTTAGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.04, G:0.36, T:0.17
Consensus pattern (24 bp):
AATCAAGGAGAGGATTAGGGAGAA
Found at i:68273418 original size:21 final size:22
Alignment explanation
Indices: 68273378--68273423 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
68273368 ATCATATAAC
68273378 CCACCCCTATCCAACAAACACA
1 CCACCCCTATCCAACAAACACA
* *
68273400 CCACCCGTA-CCAACCAACACA
1 CCACCCCTATCCAACAAACACA
68273421 CCA
1 CCA
68273424 ACATCGTAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.39, C:0.52, G:0.02, T:0.07
Consensus pattern (22 bp):
CCACCCCTATCCAACAAACACA
Found at i:68276693 original size:39 final size:39
Alignment explanation
Indices: 68276602--68276753 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
68276592 TATGGTAACC
* * * **
68276602 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
68276642 CGCACGAA-TGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCAC-AATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
68276681 CACACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
68276720 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
68276754 CAATTCGCAC
Statistics
Matches: 104, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
38 2 0.02
39 85 0.82
40 15 0.14
41 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:68282353 original size:40 final size:39
Alignment explanation
Indices: 68282249--68282462 Score: 211
Period size: 40 Copynumber: 5.4 Consensus size: 39
68282239 AAGCCAAGTA
* * *
68282249 CCTTCGGGATTTAACCGGATATAGCT-ACTCACTC-AATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCACACAAATG
* *
68282287 CCTTCGGGACATAGCCGGATATAGTAACTCACACAATTG
1 CCTTCGGGACTTAGCCGGATATAGTAACTCACACAAATG
*
68282326 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGC-CGGATATAGTAACTCACACAAATG
* * * *
68282366 CCTTTGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCACACAAATG
* * * *
68282406 CCTTCGGGACCTAGCCCAGA-ACTAGTCACT-AGCGCAAAATG
1 CCTTCGGGACTTAG-CCGGATA-TAGTAACTCA-CAC-AAATG
68282447 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
68282463 CGGTTATCAT
Statistics
Matches: 149, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
37 1 0.01
38 28 0.19
39 17 0.11
40 84 0.56
41 19 0.13
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCACACAAATG
Found at i:68286365 original size:29 final size:28
Alignment explanation
Indices: 68286333--68286435 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
68286323 GTGACGAGAT
* *
68286333 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
68286362 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
68286391 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
68286420 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68286436 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:68293355 original size:40 final size:40
Alignment explanation
Indices: 68293251--68293467 Score: 239
Period size: 40 Copynumber: 5.5 Consensus size: 40
68293241 AAGCCAAGTA
* * *
68293251 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
68293289 CCTTCGGGACATAG-CCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
68293328 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
68293368 CCTTCGGGACTTTGCCCGGATGTAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
68293408 CCTTCGGGACTTAGCCCAGA-ACTAGTCACTAGTGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
68293449 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68293468 TTATCATCCA
Statistics
Matches: 154, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
37 1 0.01
38 28 0.18
39 15 0.10
40 83 0.54
41 23 0.15
42 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68301704 original size:26 final size:26
Alignment explanation
Indices: 68301672--68301723 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
68301662 TATTACGTGA
68301672 ATGTAGTATGTCATACTCAAACCAAT
1 ATGTAGTATGTCATACTCAAACCAAT
68301698 ATGTAGTATGTCATACTCAAACCAAT
1 ATGTAGTATGTCATACTCAAACCAAT
68301724 CATATAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (26 bp):
ATGTAGTATGTCATACTCAAACCAAT
Found at i:68301735 original size:26 final size:26
Alignment explanation
Indices: 68301678--68301739 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
68301668 GTGAATGTAG
* *
68301678 TATGTCATACTCAAACCAATATGTAG
1 TATGTCATACTCAAACCAATATATAA
68301704 TATGTCATACTCAAACCAATCATATAA
1 TATGTCATACTCAAACCAAT-ATATAA
68301731 T-TGTCATAC
1 TATGTCATAC
68301740 ACACATCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 28 0.85
27 5 0.15
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (26 bp):
TATGTCATACTCAAACCAATATATAA
Found at i:68301819 original size:27 final size:27
Alignment explanation
Indices: 68301763--68301824 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
68301753 AACCTACCAC
* * * *
68301763 TAGGGGTATAATAGTCATTTCATCTAT
1 TAGGGGTAAAATAGTAATTTAACCTAT
68301790 TAGGGGTAAAATAGTAATTTAACCCT-T
1 TAGGGGTAAAATAGTAATTTAA-CCTAT
68301817 TAGGGGTA
1 TAGGGGTA
68301825 TTTTGGTCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (27 bp):
TAGGGGTAAAATAGTAATTTAACCTAT
Found at i:68304988 original size:37 final size:37
Alignment explanation
Indices: 68304935--68305008 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
68304925 TTAACCACAT
*
68304935 AGCCTAGCACATGGGCATGTGGCTGGCCGTGTGGCAC
1 AGCCTAGCACACGGGCATGTGGCTGGCCGTGTGGCAC
68304972 AGCCTAGCACACGGGCATGTGGCTGGCCGTGTGGCAC
1 AGCCTAGCACACGGGCATGTGGCTGGCCGTGTGGCAC
68305009 GAGTTAAAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.16, C:0.28, G:0.38, T:0.18
Consensus pattern (37 bp):
AGCCTAGCACACGGGCATGTGGCTGGCCGTGTGGCAC
Found at i:68307076 original size:47 final size:47
Alignment explanation
Indices: 68306978--68307104 Score: 143
Period size: 47 Copynumber: 2.7 Consensus size: 47
68306968 ACGTATGTTT
*
68306978 GTGTAAGA-CATGTCTGGGACAT-GCATCGACTACAAGATGATAATCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGAC-ACAAGATGATAAGCA
* * ** *
68307024 ATGTAAGACCATGTCTGGGACATGGAATCGACATGAGAT-ATGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACACAAGATGATAAGC-A
* *
68307071 GTGTAAGACCGTGTCTGGAACATGGCATCGACAC
1 GTGTAAGACCATGTCTGGGACATGGCATCGACAC
68307105 CTTACCCATG
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
46 11 0.16
47 49 0.73
48 7 0.10
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACACAAGATGATAAGCA
Found at i:68314605 original size:47 final size:47
Alignment explanation
Indices: 68314544--68314764 Score: 195
Period size: 47 Copynumber: 4.7 Consensus size: 47
68314534 TATGAGAGCC
* **
68314544 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGGGTGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCATCGAGATATGTGCT
* * * * **
68314592 AGTGTAAGACATGTCTGGAACAT-GCATCGCCTTCGAGACATAAGCCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGATATGTG-CT
* *
68314639 -GTGTAGGACATGTCTAGGACAT-GCATCGGC-TACGAGATTATAGT--T
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCAT-CGAGA-TAT-GTGCT
* * *
68314684 AGTGGAAGACCATGTCTGGGACATGGCATCGACAT-GAGATATGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCATCGAGATATGTGCT
*
68314731 AGTGTAAGACTGTGTCTGGGACATGGCATCGGCA
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGGCA
68314765 CCTTACCCAC
Statistics
Matches: 138, Mismatches: 24, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
45 3 0.02
46 54 0.39
47 64 0.46
48 16 0.12
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGATATGTGCT
Found at i:68314736 original size:93 final size:94
Alignment explanation
Indices: 68314540--68314763 Score: 217
Period size: 93 Copynumber: 2.4 Consensus size: 94
68314530 ACATTATGAG
* * * * ** * *
68314540 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGC-ATCGAGATGGGT-GCTAGTGTAAGACA
1 AGCCTGTGTAAGACTATGTCTAGGACATGGCATCGGCTA-CGAGAT-TATAGTTAGTGGAAGACA
* *
68314603 TGTCTGGAACATGCATCGCCTTCGAGACATA
64 TGTCTGGAACATGCATCGACATCGAGACATA
*
68314634 AGCCTGTGTAGGAC-ATGTCTAGGACAT-GCATCGGCTACGAGATTATAGTTAGTGGAAGACCAT
1 AGCCTGTGTAAGACTATGTCTAGGACATGGCATCGGCTACGAGATTATAGTTAGTGGAAGA-CAT
* * *
68314697 GTCTGGGACATGGCATCGACAT-GAGATATG
65 GTCTGGAACAT-GCATCGACATCGAGACATA
* *
68314727 AG-CTAGTGTAAGACTGTGTCTGGGACATGGCATCGGC
1 AGCCT-GTGTAAGACTATGTCTAGGACATGGCATCGGC
68314764 ACCTTACCCA
Statistics
Matches: 107, Mismatches: 16, Indels: 13
0.79 0.12 0.10
Matches are distributed among these distances:
91 1 0.01
92 25 0.23
93 42 0.39
94 31 0.29
95 8 0.07
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (94 bp):
AGCCTGTGTAAGACTATGTCTAGGACATGGCATCGGCTACGAGATTATAGTTAGTGGAAGACATG
TCTGGAACATGCATCGACATCGAGACATA
Found at i:68316804 original size:40 final size:40
Alignment explanation
Indices: 68316749--68316929 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
68316739 CATTTGAATG
68316749 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
68316789 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
68316829 ATATCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
68316869 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
68316909 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
68316930 AAACTTGGGT
Statistics
Matches: 128, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 115 0.90
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:68322550 original size:33 final size:33
Alignment explanation
Indices: 68322513--68322577 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
68322503 ATAGTGCATG
* * *
68322513 CAGTATAGTCTAGGCCTAAGCCCTATTCAGTAT
1 CAGTACAGCCTAGGCCTAAGCCCTATACAGTAT
* *
68322546 CAGTACAGCCTAGGCCTTATCCCTATACAGTA
1 CAGTACAGCCTAGGCCTAAGCCCTATACAGTA
68322578 ATAGTGTGGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (33 bp):
CAGTACAGCCTAGGCCTAAGCCCTATACAGTAT
Found at i:68323084 original size:27 final size:27
Alignment explanation
Indices: 68323021--68323128 Score: 98
Period size: 27 Copynumber: 4.0 Consensus size: 27
68323011 ATTTTGCTCT
*
68323021 ACAGA-GGTATTTC-AGTAATTTTACACT
1 ACAGAGGGTATTTCGA-TAATTTTACA-A
* * *
68323048 ATA-AGAGTATTTCGATCATTTTACAA
1 ACAGAGGGTATTTCGATAATTTTACAA
*
68323074 ACCAG-GGGTATTTCGATAATTTTGCAA
1 A-CAGAGGGTATTTCGATAATTTTACAA
**
68323101 ATTGAGGGTATTTCGATAATTTTACAA
1 ACAGAGGGTATTTCGATAATTTTACAA
68323128 A
1 A
68323129 TCGGGGGAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
26 3 0.05
27 61 0.94
28 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (27 bp):
ACAGAGGGTATTTCGATAATTTTACAA
Found at i:68323084 original size:54 final size:54
Alignment explanation
Indices: 68323026--68323128 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
68323016 GCTCTACAGA
* *
68323026 GGTATTTC-AGTAATTTTAC-ACTATAAGAGTATTTCGATCATTTTACAAACCAGG
1 GGTATTTCGA-TAATTTTACAAAT-TAAGAGTATTTCGATAATTTTACAAACCAGG
* * *
68323080 GGTATTTCGATAATTTTGCAAATTGAGGGTATTTCGATAATTTTACAAA
1 GGTATTTCGATAATTTTACAAATTAAGAGTATTTCGATAATTTTACAAA
68323129 TCGGGGGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
54 39 0.93
55 3 0.07
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.39
Consensus pattern (54 bp):
GGTATTTCGATAATTTTACAAATTAAGAGTATTTCGATAATTTTACAAACCAGG
Found at i:68323140 original size:27 final size:27
Alignment explanation
Indices: 68323054--68323140 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
68323044 CACTATAAGA
* * *
68323054 GTATTTCGATCATTTTACAAACCAGGG
1 GTATTTCGATAATTTTACAAATCGGGG
* * *
68323081 GTATTTCGATAATTTTGCAAATTGAGG
1 GTATTTCGATAATTTTACAAATCGGGG
68323108 GTATTTCGATAATTTTACAAATCGGGG
1 GTATTTCGATAATTTTACAAATCGGGG
*
68323135 GAATTT
1 GTATTT
68323141 ATGACCCATC
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
GTATTTCGATAATTTTACAAATCGGGG
Found at i:68326861 original size:43 final size:43
Alignment explanation
Indices: 68326758--68326907 Score: 140
Period size: 43 Copynumber: 3.5 Consensus size: 43
68326748 ATCCCGAATG
* * * * * *
68326758 TGGTCTTACATGTTATCACATATCGATGACACTATCCCAGACA
1 TGGTCTTACACGTAATCACATAACGATGCCAATGTCCCAGACA
* * * * * *
68326801 GGGTCATATACGAAATCATATAACGATGCCAATGTCCCAGGCA
1 TGGTCTTACACGTAATCACATAACGATGCCAATGTCCCAGACA
* * *
68326844 TGGTCTTACACGTAATCACA-ATACAATTCCAATGTCCCAAACA
1 TGGTCTTACACGTAATCACATA-ACGATGCCAATGTCCCAGACA
*
68326887 TGGTCTTACATGTAATCACAT
1 TGGTCTTACACGTAATCACAT
68326908 CCCGGTAATC
Statistics
Matches: 83, Mismatches: 22, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
42 1 0.01
43 82 0.99
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
TGGTCTTACACGTAATCACATAACGATGCCAATGTCCCAGACA
Found at i:68328172 original size:43 final size:43
Alignment explanation
Indices: 68328111--68328269 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
68328101 GGCTCTTACA
* * *
68328111 TCCCAAATATGGTCTTACATGTTATCACATATCGATGCCAATG
1 TCCCAAACATGGTCTTACACGTAATCACATATCGATGCCAATG
* * *
68328154 TCCCAAACATGGTCTTACACGAAATCATATAAT-GATGCCAATT
1 TCCCAAACATGGTCTTACACGTAATCACAT-ATCGATGCCAATG
* * * * *
68328197 TCCTAGACATGGTCTTACACGTAATCACA-ATACAATTCTAATG
1 TCCCAAACATGGTCTTACACGTAATCACATAT-CGATGCCAATG
* * *
68328240 CCCCAGACATGGTCTTACATGTAATCACAT
1 TCCCAAACATGGTCTTACACGTAATCACAT
68328270 CTTGGTTGTG
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
41 2 0.02
43 91 0.96
44 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.30
Consensus pattern (43 bp):
TCCCAAACATGGTCTTACACGTAATCACATATCGATGCCAATG
Found at i:68330081 original size:40 final size:40
Alignment explanation
Indices: 68330033--68330326 Score: 430
Period size: 40 Copynumber: 7.2 Consensus size: 40
68330023 GGACTAAGAT
68330033 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
68330073 CCGAAGGCATTTAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CC----G-A---AGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
68330121 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
68330161 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
68330201 CCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
68330241 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
68330281 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
68330320 CCGAAGG
1 CCGAAGG
68330327 TACTTGGGTT
Statistics
Matches: 237, Mismatches: 8, Indels: 19
0.90 0.03 0.07
Matches are distributed among these distances:
39 15 0.06
40 179 0.76
41 2 0.01
43 1 0.00
44 2 0.01
45 1 0.00
48 37 0.16
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:68333640 original size:14 final size:14
Alignment explanation
Indices: 68333621--68333648 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68333611 TTTCCAAGCC
68333621 TTCATGTTACCCAT
1 TTCATGTTACCCAT
68333635 TTCATGTTACCCAT
1 TTCATGTTACCCAT
68333649 AATCTCTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (14 bp):
TTCATGTTACCCAT
Found at i:68335576 original size:46 final size:48
Alignment explanation
Indices: 68335372--68335689 Score: 219
Period size: 46 Copynumber: 6.7 Consensus size: 48
68335362 GGGTATAATA
* * *
68335372 CCGATGCATTGTCCCAGACATGGTTTTACACTGGCTATTGAAATC--GAGG
1 CCGATGCA-TGTCCCAGACATGGTCTTACACTGGCT-CT-ACATCTTGAGG
* * * * * * *
68335421 CTGACGTCGTGTCCCAGACATGGTCTTACACTAGCTCTCACATATTCATG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCTTGAGG
* * * *
68335471 CCAATGCCATGTCCCAAACATGGTCTTACACT-G-AC-ACATCTCGTA-G
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTTG-AGG
68335517 CCGATGCATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTTGAGG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTTGAGG
* * * ** * ** *
68335563 CTGATGCACGTCCCAAACAT-GTCTTACACTATCTCT-CGTCTCAATG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTTGAGG
* ** *
68335609 CCGATGCCATGTCCCAGACATGGTCTTAGACTGGCTCT-CATAATGTGG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTTGAGG
* *
68335657 TCGATGCATGTCCTAGACAT-GTCTTACACTGGC
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGC
68335690 ACACAAATAA
Statistics
Matches: 208, Mismatches: 50, Indels: 25
0.73 0.18 0.09
Matches are distributed among these distances:
44 10 0.05
45 15 0.07
46 71 0.34
47 27 0.13
48 26 0.12
49 30 0.14
50 29 0.14
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTTGAGG
Found at i:68335663 original size:94 final size:92
Alignment explanation
Indices: 68335516--68335686 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 92
68335506 ACATCTCGTA
**
68335516 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCTGATGCACGTCCCAAAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCTGATGCACGTCCCAAAC
68335581 ATGTCTTACACTATCTCTCGTCTCAAT
66 ATGTCTTACACTATCTCTCGTCTCAAT
* * * *
68335608 GCCGATGCCATGTCCCAGACATGGTCTTAGACTGGCTCT-CATAATGTGG-TCGATGCATGTCCT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATAATGAGGCT-GATGCACGTCCC
*
68335671 AGACATGTCTTACACT
62 AAACATGTCTTACACT
68335687 GGCACACAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 7 0.10
93 15 0.22
94 45 0.66
95 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCTGATGCACGTCCCAAAC
ATGTCTTACACTATCTCTCGTCTCAAT
Found at i:68336597 original size:10 final size:9
Alignment explanation
Indices: 68336572--68336596 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
68336562 TTCAAGGATC
68336572 TCAAAAACA
1 TCAAAAACA
68336581 TCAAAAACA
1 TCAAAAACA
68336590 TCAAAAA
1 TCAAAAA
68336597 AACCAACACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.20, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAACA
Found at i:68338757 original size:25 final size:25
Alignment explanation
Indices: 68338729--68338807 Score: 86
Period size: 25 Copynumber: 3.1 Consensus size: 25
68338719 CCCTAATTGG
68338729 TGGTAAAATGACTATTTTGCCCTTA
1 TGGTAAAATGACTATTTTGCCCTTA
*** *
68338754 TGGTAAAATGACTAAAATGCCCTGACA
1 TGGTAAAATGACTATTTTGCCCT--TA
* *
68338781 TGGTAAATTGACTATTTTGCCCCTA
1 TGGTAAAATGACTATTTTGCCCTTA
68338806 TG
1 TG
68338808 TGATATATGT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
25 23 0.55
27 19 0.45
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (25 bp):
TGGTAAAATGACTATTTTGCCCTTA
Done.