Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 220 of 433
Found at i:68339142 original size:18 final size:18
Alignment explanation
Indices: 68339119--68339153 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
68339109 TTGCATACTA
*
68339119 TTTACTGTTGCTGCAATG
1 TTTACTGTTACTGCAATG
68339137 TTTACTGTTACTGCAAT
1 TTTACTGTTACTGCAAT
68339154 AGGCCAAGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (18 bp):
TTTACTGTTACTGCAATG
Found at i:68351812 original size:40 final size:40
Alignment explanation
Indices: 68351753--68351942 Score: 292
Period size: 40 Copynumber: 4.8 Consensus size: 40
68351743 ATTCGGATGA
*
68351753 TAATTCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
*
68351793 TAATTCCGGGCTAAGTCCCGAAGCCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
68351833 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* * * *
68351873 CAAATCCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* *
68351913 TATAAT-CGGGCTATGTCCCGAAGGCATTTG
1 TA-ATTCCGGGCTAAGTCCCGAAGGCATTTG
68351943 AGTGAGTAGC
Statistics
Matches: 139, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 136 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:68360213 original size:41 final size:40
Alignment explanation
Indices: 68360004--68360220 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
68359994 AAGCCAAGTA
* * * *
68360004 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-ATTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
68360042 CCTTCGGGACATAG-CCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68360081 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
68360121 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
68360161 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
68360202 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68360221 TTATCATCCA
Statistics
Matches: 162, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
37 1 0.01
38 28 0.17
39 17 0.10
40 88 0.54
41 24 0.15
42 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68363107 original size:40 final size:40
Alignment explanation
Indices: 68363052--68363248 Score: 297
Period size: 40 Copynumber: 4.9 Consensus size: 40
68363042 ATTCGGATGA
*
68363052 TAATTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
68363092 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
68363132 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* * * * *
68363172 CAAATCGGGGCTAAGTCCCGAAGGCATTGGTACGAGTTAC
1 TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* * *
68363212 T-ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 TAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
68363249 AGCTATATCC
Statistics
Matches: 142, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:68367323 original size:40 final size:40
Alignment explanation
Indices: 68367278--68367444 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 40
68367268 CGGAATATAA
68367278 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
68367318 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
68367358 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68367398 CCGGATA-AATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
68367437 CCGGATAT
1 CCGGATAT
68367445 CATTCAATTT
Statistics
Matches: 99, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
39 29 0.29
40 70 0.71
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68370601 original size:410 final size:410
Alignment explanation
Indices: 68369841--68370660 Score: 1559
Period size: 410 Copynumber: 2.0 Consensus size: 410
68369831 CACTCACCCT
*
68369841 TCAAGCTCGCAATTTTGACAACACATCAAAAATTGAAGGTGATCATCTAAACCATTCTATTAAAA
1 TCAAGCTCGCAATTCTGACAACACATCAAAAATTGAAGGTGATCATCTAAACCATTCTATTAAAA
68369906 CTGACCACATGATACAACCCACTTTAAAGGAGATAAGTCTGAAGGAAGTACATGAGCCACTCTCG
66 CTGACCACATGATACAACCCACTTTAAAGGAGATAAGTCTGAAGGAAGTACATGAGCCACTCTCG
*
68369971 AATAATAGTAGAGGTTCTATTCATGAAGAACGAAGGCTGCAAGTAGAGGAGCTAGATGAATGGCG
131 AATAATAGTAGAGGTTCTATTCATGAAGAACGAAGGCTGCAAGTAGAAGAGCTAGATGAATGGCG
* *
68370036 AACACACGATAAACCGACAACAGACGATAAATCAAAACTACGCCAAAATGAGCCCGATACCTCTC
196 AACACACGATAAACCAACAACAGACGATAAATCAAAACTACGCCAAAACGAGCCCGATACCTCTC
* **
68370101 TAAATCAACTTAAGGTTGGTGATAAGGTCTTATTAGATGCCGTAGATCCCCACATTGTCACTACC
261 CAAATCAACTTAAGGTTGGTGATAAGGTCTTATTAGATGCCACAGATCCCCACATTGTCACTACC
68370166 ACACTGAATGAGGAAATCCCTCTTATTTTTCCATTCGGTACGGTGGAGGTGAGTCATCCAAAGTT
326 ACACTGAATGAGGAAATCCCTCTTATTTTTCCATTCGGTACGGTGGAGGTGAGTCATCCAAAGTT
68370231 CGGCACTTTTAAGGTAAACA
391 CGGCACTTTTAAGGTAAACA
*
68370251 TCAAGCTCGTAATTCTGACAACACATCAAAAATTGAAGGTGATCATCTAAACCATTCTATTAAAA
1 TCAAGCTCGCAATTCTGACAACACATCAAAAATTGAAGGTGATCATCTAAACCATTCTATTAAAA
*
68370316 CTGACCACATGATACAACCCACTTTACAGGAGATAAGTCTGAAGGAAGTACATGAGCCACTCTCG
66 CTGACCACATGATACAACCCACTTTAAAGGAGATAAGTCTGAAGGAAGTACATGAGCCACTCTCG
68370381 AATAATAGTAGAGGTTCTATTCATGAAGAACGAAGGCTGCAAGTAGAAGAGCTAGATGAATGGCG
131 AATAATAGTAGAGGTTCTATTCATGAAGAACGAAGGCTGCAAGTAGAAGAGCTAGATGAATGGCG
68370446 AACACACGATAAACCAACAACAGACGATAAATCAAAACTACGCCAAAACGAGCCCGATACCTCTC
196 AACACACGATAAACCAACAACAGACGATAAATCAAAACTACGCCAAAACGAGCCCGATACCTCTC
68370511 CAAATCAACTTAAGGTTGGTGATAAGGTCTTATTAGATGCCACAGATCCCCACATTGTCACTACC
261 CAAATCAACTTAAGGTTGGTGATAAGGTCTTATTAGATGCCACAGATCCCCACATTGTCACTACC
68370576 ACACTGAATGAGGAAATCCCTCTTATTTTTCCATTCGGTACGGTGGAGGTGAGTCATCCAAAGTT
326 ACACTGAATGAGGAAATCCCTCTTATTTTTCCATTCGGTACGGTGGAGGTGAGTCATCCAAAGTT
68370641 CGGCACTTTTAAGGTAAACA
391 CGGCACTTTTAAGGTAAACA
68370661 ATACCCGTTT
Statistics
Matches: 401, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
410 401 1.00
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.24
Consensus pattern (410 bp):
TCAAGCTCGCAATTCTGACAACACATCAAAAATTGAAGGTGATCATCTAAACCATTCTATTAAAA
CTGACCACATGATACAACCCACTTTAAAGGAGATAAGTCTGAAGGAAGTACATGAGCCACTCTCG
AATAATAGTAGAGGTTCTATTCATGAAGAACGAAGGCTGCAAGTAGAAGAGCTAGATGAATGGCG
AACACACGATAAACCAACAACAGACGATAAATCAAAACTACGCCAAAACGAGCCCGATACCTCTC
CAAATCAACTTAAGGTTGGTGATAAGGTCTTATTAGATGCCACAGATCCCCACATTGTCACTACC
ACACTGAATGAGGAAATCCCTCTTATTTTTCCATTCGGTACGGTGGAGGTGAGTCATCCAAAGTT
CGGCACTTTTAAGGTAAACA
Found at i:68377838 original size:15 final size:15
Alignment explanation
Indices: 68377801--68377843 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
68377791 TTATGATATG
*
68377801 GTATCTTGGATTTTT
1 GTATCTTGGATTCTT
*
68377816 GTACCTTGGATATCTT
1 GTATCTTGGAT-TCTT
68377832 -TATCTTGGATTC
1 GTATCTTGGATTC
68377844 CTCTGTCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 2 0.08
15 19 0.79
16 3 0.12
ACGTcount: A:0.16, C:0.14, G:0.19, T:0.51
Consensus pattern (15 bp):
GTATCTTGGATTCTT
Found at i:68382582 original size:54 final size:54
Alignment explanation
Indices: 68382410--68382593 Score: 264
Period size: 55 Copynumber: 3.4 Consensus size: 54
68382400 CATGTGCTGA
* *
68382410 CATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
** * *
68382463 CATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGA
1 CATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTGG
* *
68382518 CATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
68382572 CATGGTCTTACATGATATCCTT
1 CATGGTCTTACATGATATCCTT
68382594 ATCTTACCAA
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
52 2 0.02
53 25 0.22
54 42 0.36
55 45 0.39
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:68382815 original size:124 final size:124
Alignment explanation
Indices: 68382619--68382868 Score: 446
Period size: 124 Copynumber: 2.0 Consensus size: 124
68382609 ATGTTCCAAA
* *
68382619 CATGGTCTTACATGGTATCCTTGTCTTTGTGCTAATGCCACATCTTGATGTGGTCTTACATGGAG
1 CATGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGGAG
* *
68382684 TCCTTAATCAATGCCGATGCCATGTCTTGGCATGGTCTTACACGGGATCCTTCCTTTAC
66 TCCTTAATCAATACCGATGCCATGTCTTGGCATGGTCTTACACGGGATCCTTCCCTTAC
*
68382743 CATGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGCCACATCTTGATGTGGTCTTACGTGGAG
1 CATGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGGAG
*
68382808 TCCTTAATCAATACCGATGCCATGTCTTGGCATGGTCTTACATGGGATCCTTCCCTTAC
66 TCCTTAATCAATACCGATGCCATGTCTTGGCATGGTCTTACACGGGATCCTTCCCTTAC
68382867 CA
1 CA
68382869 ATGCCATGTC
Statistics
Matches: 120, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 120 1.00
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (124 bp):
CATGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGGAG
TCCTTAATCAATACCGATGCCATGTCTTGGCATGGTCTTACACGGGATCCTTCCCTTAC
Found at i:68382887 original size:45 final size:45
Alignment explanation
Indices: 68382819--68382904 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
68382809 CCTTAATCAA
* *
68382819 TACCGATGCCATGTCTTGGCATGGTCTTACATGGGATCCTTCCCT
1 TACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTCCCT
*
68382864 TACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 TACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
68382905 AACCGTCAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.19, C:0.27, G:0.20, T:0.35
Consensus pattern (45 bp):
TACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTCCCT
Found at i:68383008 original size:44 final size:44
Alignment explanation
Indices: 68382907--68383033 Score: 177
Period size: 44 Copynumber: 2.9 Consensus size: 44
68382897 GTATCCTTAA
* * * * *
68382907 CCGTCAATTCCTCTTTAAATGCCATGTTATGAA-CATGGA-CTTT
1 CCGTCAATTCTTCCTTAATTGCCATGGTA-CAACCATGGACCTTT
68382950 CCGTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACCTTT
1 CCGTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACCTTT
*
68382994 CCGTCAATTGTTCCTTAATTGCCATGGTACAACCATGGAC
1 CCGTCAATTCTTCCTTAATTGCCATGGTACAACCATGGAC
68383034 TTTGAGATAT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
42 2 0.03
43 31 0.41
44 43 0.57
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (44 bp):
CCGTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACCTTT
Found at i:68383811 original size:43 final size:43
Alignment explanation
Indices: 68383746--68383856 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
68383736 CTCCACTTTA
* * * * *
68383746 AGACATGGTCCTACACGAAATCA-TATAACGATGAAAATGTCTC
1 AGACATGGTCTTACACGTAATCACAAT-ACAATGAAAATGTCCC
* **
68383789 ATACATGGTCTTACACGTAATCACAATACAATGCCAATGTCCC
1 AGACATGGTCTTACACGTAATCACAATACAATGAAAATGTCCC
*
68383832 AGACATGGTCTTACATGTAATCACA
1 AGACATGGTCTTACACGTAATCACA
68383857 TCTCGGTAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 55 0.96
44 2 0.04
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.25
Consensus pattern (43 bp):
AGACATGGTCTTACACGTAATCACAATACAATGAAAATGTCCC
Found at i:68387522 original size:16 final size:15
Alignment explanation
Indices: 68387489--68387517 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
68387479 ATTTTCTGTG
68387489 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
68387504 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
68387518 AATTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:68389475 original size:67 final size:67
Alignment explanation
Indices: 68389357--68389510 Score: 238
Period size: 67 Copynumber: 2.3 Consensus size: 67
68389347 GAGGAAGCAT
* * *
68389357 TCTGGCAGCCTTGCTGCAATCTGGTGGCCTCGCTACATATATCTGTCCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTAGCCACATATATCTGTCCTGGTGACTTCGTCACAA
68389422 TA
66 TA
* *
68389424 TCTGGCAGCCTCACTGCAATCTGGTGGCCTAGCCACA-ATATCTGTATCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTAGCCACATATATCTGT-CCTGGTGACTTCGTCACA
68389488 ATA
65 ATA
*
68389491 TTTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
68389511 TTCTGTGGTG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
66 8 0.10
67 71 0.90
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTAGCCACATATATCTGTCCTGGTGACTTCGTCACAA
TA
Found at i:68398772 original size:56 final size:56
Alignment explanation
Indices: 68398685--68398819 Score: 182
Period size: 56 Copynumber: 2.4 Consensus size: 56
68398675 ACCATGGGAT
* * *
68398685 CGATATATGTGTGTGAGTAAGACCACGTTTTATACGTTAGCATTGATACGTGGCTC
1 CGATATATGTGTGTGAGTAAGACAACATTTTATACGTTAGCATTGATACGTGACTC
* * * *
68398741 TGATATACT-TGTGTGAGTAAGACAATATTTTATACGTTGGCATTGATATGTGACTC
1 CGATATA-TGTGTGTGAGTAAGACAACATTTTATACGTTAGCATTGATACGTGACTC
*
68398797 CGATATATGTGTGCGAGTAAGAC
1 CGATATATGTGTGTGAGTAAGAC
68398820 CCTGTCTAGG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
55 1 0.01
56 66 0.97
57 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.35
Consensus pattern (56 bp):
CGATATATGTGTGTGAGTAAGACAACATTTTATACGTTAGCATTGATACGTGACTC
Found at i:68414840 original size:34 final size:34
Alignment explanation
Indices: 68414765--68414845 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 34
68414755 TTGTTTGCAT
*
68414765 ACTA-TACTAAAAAGGGCTCAGGCCCAGACTGTC
1 ACTATTACTAAAAAGGACTCAGGCCCAGACTGTC
* * * *
68414798 ATTGTTACTAAAATGGACTTAGGCCCAGACTG-C
1 ACTATTACTAAAAAGGACTCAGGCCCAGACTGTC
68414831 GACTATTACTAAAAA
1 -ACTATTACTAAAAA
68414846 AGGTGCCGAG
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
33 3 0.08
34 35 0.92
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (34 bp):
ACTATTACTAAAAAGGACTCAGGCCCAGACTGTC
Found at i:68417463 original size:56 final size:56
Alignment explanation
Indices: 68417399--68417507 Score: 191
Period size: 56 Copynumber: 1.9 Consensus size: 56
68417389 ATATATGTGG
*
68417399 TTTTATACGTTGGCATCGATATGTGACTCCGATATACGTGTGCGAGTAAGACCACA
1 TTTTATACGTTGGCATCAATATGTGACTCCGATATACGTGTGCGAGTAAGACCACA
* *
68417455 TTTTATACGTTGGCATCAATATGTGACTCTGATATATGTGTGCGAGTAAGACC
1 TTTTATACGTTGGCATCAATATGTGACTCCGATATACGTGTGCGAGTAAGACC
68417508 CTGTTTGGGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (56 bp):
TTTTATACGTTGGCATCAATATGTGACTCCGATATACGTGTGCGAGTAAGACCACA
Found at i:68418418 original size:35 final size:35
Alignment explanation
Indices: 68418373--68418450 Score: 147
Period size: 35 Copynumber: 2.2 Consensus size: 35
68418363 GTGAATCGGC
*
68418373 TATGATATATATATAATAGTATGAATTATGTTTGT
1 TATGCTATATATATAATAGTATGAATTATGTTTGT
68418408 TATGCTATATATATAATAGTATGAATTATGTTTGT
1 TATGCTATATATATAATAGTATGAATTATGTTTGT
68418443 TATGCTAT
1 TATGCTAT
68418451 CTTTGGTTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.49
Consensus pattern (35 bp):
TATGCTATATATATAATAGTATGAATTATGTTTGT
Found at i:68425277 original size:24 final size:24
Alignment explanation
Indices: 68425250--68425336 Score: 156
Period size: 24 Copynumber: 3.6 Consensus size: 24
68425240 CTTAACTCAT
68425250 TCGCACACATAGTGCCGCGTTTCC
1 TCGCACACATAGTGCCGCGTTTCC
68425274 TCGCACACATAGTGCCGCGTTTCC
1 TCGCACACATAGTGCCGCGTTTCC
*
68425298 TCGCACACATAGTGCCGTGTTTCC
1 TCGCACACATAGTGCCGCGTTTCC
*
68425322 TCGCACACATTGTGC
1 TCGCACACATAGTGC
68425337 TATATAATCT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.17, C:0.36, G:0.21, T:0.26
Consensus pattern (24 bp):
TCGCACACATAGTGCCGCGTTTCC
Found at i:68425349 original size:48 final size:48
Alignment explanation
Indices: 68425250--68425409 Score: 173
Period size: 48 Copynumber: 3.3 Consensus size: 48
68425240 CTTAACTCAT
* * * *
68425250 TCGCACACATAGTGCCGCGTTTCCTCGCACACATAGTGCCGCGT-TTCC
1 TCGCACACATAGTGCCGTGTTTCCTCGCACACATAGTGCCACATAAT-C
* * *
68425298 TCGCACACATAGTGCCGTGTTTCCTCGCACACATTGTGCTATATAATC
1 TCGCACACATAGTGCCGTGTTTCCTCGCACACATAGTGCCACATAATC
* *
68425346 TCGCACACATAGTGCCATGTAGTTT--TTGCACACATAGTGCCACATAACC
1 TCGCACACATAGTGCC--GT-GTTTCCTCGCACACATAGTGCCACATAATC
*
68425395 TCGTACACATAGTGC
1 TCGCACACATAGTGC
68425410 TGAAATTTCT
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
48 55 0.58
49 34 0.36
50 2 0.02
51 4 0.04
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
TCGCACACATAGTGCCGTGTTTCCTCGCACACATAGTGCCACATAATC
Found at i:68429564 original size:36 final size:36
Alignment explanation
Indices: 68429524--68429659 Score: 166
Period size: 36 Copynumber: 3.8 Consensus size: 36
68429514 TTTAAAACAG
*
68429524 TGGCAGGCTTAACATGCGAATCAAAATAAAAAATAA
1 TGGCATGCTTAACATGCGAATCAAAATAAAAAATAA
* * * *
68429560 TGGCATGCTTAACATGTGAATTAGAAA-CAGAAATAA
1 TGGCATGCTTAACATGCGAATCA-AAATAAAAAATAA
* * *
68429596 TGGTATGCTTAACATGCAAATCAGAATAAAAAATAA
1 TGGCATGCTTAACATGCGAATCAAAATAAAAAATAA
* *
68429632 TGGCATGCATAACATGCTAATCAAAATA
1 TGGCATGCTTAACATGCGAATCAAAATA
68429660 GCATAATATT
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
35 2 0.02
36 77 0.94
37 3 0.04
ACGTcount: A:0.47, C:0.13, G:0.16, T:0.24
Consensus pattern (36 bp):
TGGCATGCTTAACATGCGAATCAAAATAAAAAATAA
Found at i:68433442 original size:40 final size:40
Alignment explanation
Indices: 68433397--68433526 Score: 181
Period size: 40 Copynumber: 3.2 Consensus size: 40
68433387 CGGAATATAA
68433397 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
68433437 CCGGATAGAATGACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
68433477 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
68433517 CCGGATATAA
1 CCGGATATAA
68433527 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 76 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:68433541 original size:40 final size:39
Alignment explanation
Indices: 68433413--68433563 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 39
68433403 ATAACCATGT
* * *
68433413 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* ** *
68433453 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
68433493 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
68433532 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
68433564 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 13 0.14
40 82 0.86
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:68433547 original size:80 final size:79
Alignment explanation
Indices: 68433397--68433563 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
68433387 CGGAATATAA
*
68433397 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACAAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACAAATG
68433462 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** * *
68433477 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATAAT
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACAAA
*
68433540 TGTCTTCGGGCTTAGC
64 TGCCTTCGGGCTTAGC
68433556 CCGGATAT
1 CCGGATAT
68433564 CATTCAATTT
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
79 15 0.20
80 60 0.79
81 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACAAATG
CCTTCGGGCTTAGC
Found at i:68442124 original size:20 final size:20
Alignment explanation
Indices: 68442085--68442124 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
68442075 AAACTTCTTC
* *
68442085 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
68442105 ACTTACTGACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
68442125 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.38
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:68442501 original size:55 final size:54
Alignment explanation
Indices: 68442350--68442563 Score: 209
Period size: 55 Copynumber: 3.9 Consensus size: 54
68442340 TACGTGGTAT
* * * * *
68442350 CCTTTTGAAACTTACCATTTCCATGTCTCGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTG
* * *
68442404 CCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTG
1 CCTTATGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTG
* ***
68442457 CCTTATAGAAACTTATCAATGCCATGTCTTGACATGGTCTTACATAATATCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTG
* * * * * *
68442512 CCTTA-GAAACCTTAACAGTTTCCATGCCTTGGCATGGTCTTACATGGTATCC
1 CCTTATGAAA-CTTACCA-ATGCCATGTCTTGACATGGTCTTACATGGGATCC
68442564 ATAAACCCTA
Statistics
Matches: 132, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 46 0.35
54 13 0.10
55 69 0.52
56 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTG
Found at i:68442511 original size:108 final size:110
Alignment explanation
Indices: 68442356--68442558 Score: 286
Period size: 108 Copynumber: 1.9 Consensus size: 110
68442346 GTATCCTTTT
* * ** *
68442356 GAAACTTACCATTTCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATAATATCCTTGCCTTA-GAAACCTCAAC
68442419 A-ATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 AGATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* * *
68442464 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACATAATATCCTTGCCTTAGAAACCTTAACA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATAATATCCTTGCCTTAGAAACCTCAACA
* *
68442529 GTTTCCATGCCTTGGCATGGTCTTACATGG
66 GATGCCATGCCTTGGCATGGTCTTACATGG
68442559 TATCCATAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.60
109 5 0.06
110 27 0.33
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATAATATCCTTGCCTTAGAAACCTCAACA
GATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:68448490 original size:80 final size:80
Alignment explanation
Indices: 68448406--68448554 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
68448396 TATGGTAACC
* * * *
68448406 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
68448470 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
68448486 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
68448551 CCGG
66 CCGG
68448555 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:68448496 original size:40 final size:38
Alignment explanation
Indices: 68448447--68448554 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
68448437 ATCACGATTT
*
68448447 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
68448487 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
68448527 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
68448555 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:68456603 original size:80 final size:80
Alignment explanation
Indices: 68456519--68456667 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
68456509 TATGGTAACC
* * * *
68456519 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
68456583 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
68456599 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
68456664 CCGG
66 CCGG
68456668 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:68456609 original size:40 final size:38
Alignment explanation
Indices: 68456560--68456667 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
68456550 ATCACGATTT
*
68456560 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
68456600 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
68456640 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
68456668 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:68461525 original size:80 final size:80
Alignment explanation
Indices: 68461441--68461589 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
68461431 TATGGTAACC
* * * *
68461441 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
68461505 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
68461521 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
68461586 CCGG
66 CCGG
68461590 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:68461531 original size:40 final size:38
Alignment explanation
Indices: 68461482--68461589 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
68461472 ATCACGATTT
*
68461482 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
68461522 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
68461562 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
68461590 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:68466090 original size:16 final size:16
Alignment explanation
Indices: 68466071--68466101 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68466061 CTTCTTCACT
68466071 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
68466087 TACTTACTTACTTAA
1 TACTCACTTACTTAA
68466102 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:68466107 original size:20 final size:20
Alignment explanation
Indices: 68466068--68466107 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
68466058 AAACTTCTTC
* *
68466068 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
68466088 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
68466108 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:68466413 original size:53 final size:53
Alignment explanation
Indices: 68466331--68466534 Score: 198
Period size: 55 Copynumber: 3.8 Consensus size: 53
68466321 ATTCTTTTGA
* * *
68466331 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * *
68466384 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATAGG-A-CCTTTTCCTTATATA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GGTATCC-TTGCC-T-TATG
* * * * *
68466439 AACTTATCAATGCCATGTCTTGAAATGGTCATACATGATATCCTTGCCTTA-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* *
68466491 AAATCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTAT
1 -AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTAT
68466535 TCTTAAACCC
Statistics
Matches: 119, Mismatches: 23, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
52 2 0.02
53 40 0.34
54 12 0.10
55 63 0.53
56 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.35
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:68466474 original size:108 final size:110
Alignment explanation
Indices: 68466330--68466529 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
68466320 TATTCTTTTG
* * * *
68466330 AAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCA
1 AAACTTACCAATGCCATGTCTCGAAATGGTCATACATGATATCCTTGCCTTA-GAAATCTCACCA
68466393 A-TGCCATGCCTTGGCATGGTCTTACATAGGACCTTTTCCTTATAT
65 ATTGCCATGCCTTGGCATGGTCTTACATAGGACCTTTTCCTTATAT
* * *
68466438 AAACTTATCAATGCCATGTCTTGAAATGGTCATACATGATATCCTTGCCTTAGAAATCTTACCAA
1 AAACTTACCAATGCCATGTCTCGAAATGGTCATACATGATATCCTTGCCTTAGAAATCTCACCAA
*
68466503 TTTCCATGCCTTGGCATGGTCTTACAT
66 TTGCCATGCCTTGGCATGGTCTTACAT
68466530 GGTATTCTTA
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (110 bp):
AAACTTACCAATGCCATGTCTCGAAATGGTCATACATGATATCCTTGCCTTAGAAATCTCACCAA
TTGCCATGCCTTGGCATGGTCTTACATAGGACCTTTTCCTTATAT
Found at i:68468084 original size:13 final size:13
Alignment explanation
Indices: 68468066--68468092 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68468056 TTCAGTAGTC
68468066 TTTCATCTACAGT
1 TTTCATCTACAGT
68468079 TTTCATCTACAGT
1 TTTCATCTACAGT
68468092 T
1 T
68468093 CACTACAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.07, T:0.48
Consensus pattern (13 bp):
TTTCATCTACAGT
Found at i:68470524 original size:40 final size:40
Alignment explanation
Indices: 68470475--68470642 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
68470465 TCTTCGGAAT
* * *
68470475 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
68470514 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
68470554 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
68470594 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
68470634 TTAGCCCGG
1 TTAGCCCGG
68470643 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:68474082 original size:93 final size:93
Alignment explanation
Indices: 68473970--68474141 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
68473960 CGCCCATAAG
* *
68473970 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68474035 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
68474063 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68474128 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
68474142 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68474138 original size:46 final size:46
Alignment explanation
Indices: 68473963--68474138 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
68473953 TGTAACCCGC
* * *
68473963 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
68474009 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
68474059 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
68474102 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
68474139 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:68476516 original size:27 final size:27
Alignment explanation
Indices: 68476486--68476658 Score: 247
Period size: 27 Copynumber: 6.4 Consensus size: 27
68476476 AGGGCAAAAT
* * *
68476486 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
68476513 GGTAATTATACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68476540 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
68476567 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
68476594 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
68476621 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
68476648 AGTAACTCTAC
1 GGTAATTCTAC
68476659 AAGTTATCCA
Statistics
Matches: 131, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:68482496 original size:43 final size:43
Alignment explanation
Indices: 68482440--68482594 Score: 195
Period size: 43 Copynumber: 3.6 Consensus size: 43
68482430 GCTGGTATTA
* * *
68482440 TATTTGGGCCTTTGTGCCTAGCAGGCTTACTGCCTGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTACTGCCAGTGATGTG
* * * * * *
68482483 TAATCGAGCCTTTGTGCCTAGCAGGCTTAGTGCCGGTGATCTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTACTGCCAGTGATGTG
*
68482526 TATTCGGGCCTTCGTGCCTAGCAGGCTT-CGTGTCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAC-TGCCAGTGATGTG
*
68482569 TATTCGGGCCTTCGTACCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
68482595 GTAATTCCGG
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.14, C:0.24, G:0.30, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTACTGCCAGTGATGTG
Found at i:68482605 original size:86 final size:86
Alignment explanation
Indices: 68482440--68482607 Score: 221
Period size: 86 Copynumber: 2.0 Consensus size: 86
68482430 GCTGGTATTA
* * * * *
68482440 TATTTGGGCCTTTGTGCCTAGCAGGCTTACTGCCTGTGATGTGTAATCGAGCCTTTGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTACTGCCAGTGATGTGTAATCGAGCCTTCGTACCTAGC
* *
68482505 AGGCTTAGTGCCGGTGATCTG
66 AGGCGTAATGCCGGTGATCTG
* * *
68482526 TATTCGGGCCTTCGTGCCTAGCAGGCTT-CGTGTCAGTGATGTGTATTCGGGCCTTCGTACCTAG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAC-TGCCAGTGATGTGTAATCGAGCCTTCGTACCTAG
*
68482590 CAGGCGTAATTCCGGTGA
65 CAGGCGTAATGCCGGTGA
68482608 AATGATATGT
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
85 1 0.01
86 69 0.99
ACGTcount: A:0.14, C:0.23, G:0.30, T:0.32
Consensus pattern (86 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTACTGCCAGTGATGTGTAATCGAGCCTTCGTACCTAGC
AGGCGTAATGCCGGTGATCTG
Found at i:68482991 original size:45 final size:42
Alignment explanation
Indices: 68482924--68483031 Score: 119
Period size: 45 Copynumber: 2.5 Consensus size: 42
68482914 TTGACTTGAT
* *
68482924 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
** *
68482969 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
68483011 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
68483032 ACAGGTGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 33 0.59
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:68489267 original size:40 final size:39
Alignment explanation
Indices: 68489107--68489269 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
68489097 TGTGTATGAA
*
68489107 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
68489146 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68489185 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
68489224 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
68489264 TGTGCG
1 TGTGCG
68489270 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68489285 original size:40 final size:39
Alignment explanation
Indices: 68489107--68489300 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
68489097 TGTGTATGAA
* *
68489107 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
68489146 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
68489185 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68489224 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
68489264 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
68489301 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68497183 original size:40 final size:39
Alignment explanation
Indices: 68497023--68497185 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
68497013 TGTGTATGAA
*
68497023 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
68497062 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68497101 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
68497140 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
68497180 TGTGCG
1 TGTGCG
68497186 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68497201 original size:40 final size:39
Alignment explanation
Indices: 68497023--68497216 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
68497013 TGTGTATGAA
* *
68497023 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
68497062 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
68497101 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68497140 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
68497180 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
68497217 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68504045 original size:20 final size:20
Alignment explanation
Indices: 68504020--68504083 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
68504010 ATTTTGAAAA
68504020 ACATGGTATGTATGATATGC
1 ACATGGTATGTATGATATGC
*
68504040 ACATGGCATGTATGATATGC
1 ACATGGTATGTATGATATGC
*
68504060 ACATGATATGTATGATATGC
1 ACATGGTATGTATGATATGC
68504080 ACAT
1 ACAT
68504084 ACTGTATTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGGTATGTATGATATGC
Found at i:68504167 original size:23 final size:23
Alignment explanation
Indices: 68504137--68504209 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
68504127 AGGAAGTGAA
68504137 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
68504160 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
68504183 AAAAGGGCTTTTTCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
68504207 AAA
1 AAA
68504210 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:68504226 original size:25 final size:24
Alignment explanation
Indices: 68504136--68504230 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
68504126 GAGGAAGTGA
68504136 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
68504160 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
68504183 AAAAGGGCTTTTTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
68504207 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
68504231 ATGATAAAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.37
24 29 0.46
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68504464 original size:31 final size:31
Alignment explanation
Indices: 68504424--68504483 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
68504414 CGTTTACAGT
68504424 AAAGGCTTCGGCCCAGTAATATGAAATATAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATAA
* **
68504455 AAAGTCTTCGGCCCAGTGTTATGAAATAT
1 AAAGGCTTCGGCCCAGTAATATGAAATAT
68504484 GAAATATGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATAA
Found at i:68511608 original size:25 final size:25
Alignment explanation
Indices: 68511579--68511626 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68511569 TTATAACATG
* * *
68511579 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68511604 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68511627 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68511727 original size:20 final size:20
Alignment explanation
Indices: 68511663--68511727 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
68511653 ATATTGAAAA
*
68511663 ACATGGCATGTATGATATGC
1 ACATGACATGTATGATATGC
*
68511683 ACATAACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
68511703 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
68511723 ACATG
1 ACATG
68511728 CTGTATTCAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:68511810 original size:23 final size:23
Alignment explanation
Indices: 68511780--68511922 Score: 259
Period size: 23 Copynumber: 6.1 Consensus size: 23
68511770 AGGAAGTGAA
68511780 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
68511803 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
68511826 AAAAGGGCTTATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
68511850 AAAGGGCTTATGACCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
68511873 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
68511896 AAAAGGGCTTATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
68511920 AAA
1 AAA
68511923 AGAGGCTAGG
Statistics
Matches: 116, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
23 70 0.60
24 46 0.40
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:68511848 original size:47 final size:47
Alignment explanation
Indices: 68511779--68511943 Score: 271
Period size: 47 Copynumber: 3.5 Consensus size: 47
68511769 GAGGAAGTGA
68511779 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
*
68511826 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGACCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
68511873 -AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATT
*
68511920 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
68511944 ATGATAAAAC
Statistics
Matches: 111, Mismatches: 3, Indels: 6
0.93 0.03 0.05
Matches are distributed among these distances:
46 23 0.21
47 68 0.61
48 9 0.08
49 11 0.10
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:68511893 original size:70 final size:70
Alignment explanation
Indices: 68511780--68511922 Score: 277
Period size: 70 Copynumber: 2.0 Consensus size: 70
68511770 AGGAAGTGAA
*
68511780 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAG
1 AAAGGGCTTATGACCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAG
68511845 TTATT
66 TTATT
68511850 AAAGGGCTTATGACCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAG
1 AAAGGGCTTATGACCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAG
68511915 TTATT
66 TTATT
68511920 AAA
1 AAA
68511923 AGAGGCTAGG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (70 bp):
AAAGGGCTTATGACCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAG
TTATT
Found at i:68512176 original size:30 final size:30
Alignment explanation
Indices: 68512137--68512195 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
68512127 CGTTTACAGT
68512137 AAAGGCTTCGGCCCAGTAATATGAAATATA
1 AAAGGCTTCGGCCCAGTAATATGAAATATA
* **
68512167 AAAGTCTTCGGCCCAGTGTTATGAAATAT
1 AAAGGCTTCGGCCCAGTAATATGAAATAT
68512196 GAAATATGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATA
Found at i:68514809 original size:40 final size:41
Alignment explanation
Indices: 68514764--68514930 Score: 182
Period size: 40 Copynumber: 4.2 Consensus size: 41
68514754 CGGAATATAA
*
68514764 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
68514804 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
68514844 CCGGATATAA-CCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68514884 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
68514923 CCGGATAT
1 CCGGATAT
68514931 CATTCAATTT
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
39 16 0.15
40 93 0.85
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68515774 original size:17 final size:19
Alignment explanation
Indices: 68515751--68515796 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
68515741 AAGAAGCATG
68515751 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
68515769 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
68515787 AATCATGCTC
1 AATCATGCTC
68515797 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:68522763 original size:40 final size:40
Alignment explanation
Indices: 68522718--68522884 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
68522708 CGGAATATAA
68522718 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
68522758 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
68522798 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68522838 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
68522877 CCGGATAT
1 CCGGATAT
68522885 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68523722 original size:17 final size:19
Alignment explanation
Indices: 68523699--68523744 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
68523689 AAGAAGCATG
68523699 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
68523717 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
68523735 AATCATGCTC
1 AATCATGCTC
68523745 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:68526166 original size:40 final size:39
Alignment explanation
Indices: 68526121--68526247 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
68526111 CGGAATATAA
*
68526121 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAATTGCCTTCGGGTCTTAGC
** *
68526161 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAATTGCCTTCGGGTCTTAGC
* * *
68526201 CCGGATATAATTTC-CAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA--TCACTGCACAATTGCCTTCGGGTCTTAGC
68526240 CCGGATAT
1 CCGGATAT
68526248 CATTCAATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
39 14 0.19
40 58 0.78
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAATTGCCTTCGGGTCTTAGC
Found at i:68534129 original size:40 final size:40
Alignment explanation
Indices: 68534084--68534291 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
68534074 CGGAATATAA
*
68534084 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAAC-TCGCACAAATGCCTTCGGGTCTTAGC
* *
68534124 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
* *
68534164 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
*** * * *
68534204 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68534244 CCGGATATAATTTC-CAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATAACTC-GCACAAATGCCTTCGGGTCTTAGC
68534284 CCGGATAT
1 CCGGATAT
68534292 CATTCAATTT
Statistics
Matches: 146, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 1 0.01
40 145 0.99
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:68542050 original size:18 final size:18
Alignment explanation
Indices: 68542027--68542094 Score: 75
Period size: 18 Copynumber: 3.8 Consensus size: 18
68542017 CTTGGCCCAT
*
68542027 TGCAGTAACAGTAAACAA
1 TGCAGTAACAGTAAACAG
* *
68542045 TGCAGTAATAAT-AACAG
1 TGCAGTAACAGTAAACAG
* **
68542062 TACAGTAGTAGTAAACAG
1 TGCAGTAACAGTAAACAG
68542080 TGCAGTAACAGTAAA
1 TGCAGTAACAGTAAA
68542095 TATATGCAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
17 13 0.32
18 27 0.68
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAG
Found at i:68542452 original size:27 final size:27
Alignment explanation
Indices: 68542419--68542500 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
68542409 ACATAGGGGT
68542419 AAAATAGACATCTTACCAT-AAAAGGGC
1 AAAATAGACATCTTACC-TCAAAAGGGC
* * *
68542446 AAAATAGTCATTTTACCTCATAAGGGC
1 AAAATAGACATCTTACCTCAAAAGGGC
* * * *
68542473 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAATAGACATCTTACCTCAAAAGGGC
68542500 A
1 A
68542501 GAACAGTCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 1 0.02
27 49 0.98
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (27 bp):
AAAATAGACATCTTACCTCAAAAGGGC
Found at i:68542596 original size:27 final size:27
Alignment explanation
Indices: 68542440--68542594 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
68542430 CTTACCATAA
*
68542440 AAGGGCAAAATAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
68542467 AAGGGCAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* * *
68542494 AAGGGCAGAACAGTCATTTTACCACCT
1 AAGGGCAAAACAGTCATTTTACCTCAT
*
68542521 AAGGGGAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *
68542548 -AGGGCAGAATAGTCATTTTATCC-CAT
1 AAGGGCAAAACAGTCATTTTA-CCTCAT
**
68542574 AAGGGCAAAACAACCATTTTA
1 AAGGGCAAAACAGTCATTTTA
68542595 TCGATTAAGG
Statistics
Matches: 111, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 20 0.18
27 91 0.82
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (27 bp):
AAGGGCAAAACAGTCATTTTACCTCAT
Found at i:68545903 original size:18 final size:18
Alignment explanation
Indices: 68545880--68545949 Score: 88
Period size: 18 Copynumber: 3.9 Consensus size: 18
68545870 TGGCCCATTC
68545880 CAGTAACAGTAAACAGTG
1 CAGTAACAGTAAACAGTG
68545898 CAGTAACAGT-AACAGTG
1 CAGTAACAGTAAACAGTG
* * * * *
68545915 TAGTAATAGAAAATAATG
1 CAGTAACAGTAAACAGTG
68545933 CAGTAACAGTAAACAGT
1 CAGTAACAGTAAACAGT
68545950 ATGTAAGCCC
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
17 14 0.34
18 27 0.66
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (18 bp):
CAGTAACAGTAAACAGTG
Found at i:68545920 original size:35 final size:36
Alignment explanation
Indices: 68545881--68545949 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 36
68545871 GGCCCATTCC
* *
68545881 AGTAACAGTAAACAGTGCAGTAACAGT-AACAGTGT
1 AGTAACAGAAAACAATGCAGTAACAGTAAACAGTGT
* *
68545916 AGTAATAGAAAATAATGCAGTAACAGTAAACAGT
1 AGTAACAGAAAACAATGCAGTAACAGTAAACAGT
68545950 ATGTAAGCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 23 0.79
36 6 0.21
ACGTcount: A:0.48, C:0.12, G:0.20, T:0.20
Consensus pattern (36 bp):
AGTAACAGAAAACAATGCAGTAACAGTAAACAGTGT
Found at i:68546584 original size:27 final size:27
Alignment explanation
Indices: 68546292--68546582 Score: 392
Period size: 27 Copynumber: 10.8 Consensus size: 27
68546282 CCTACCATAA
68546292 AAGGGCAAAACAAG-CATTTTACCTCAT
1 AAGGGCAAAAC-AGTCATTTTACCTCAT
68546319 AAGGGCAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
68546346 AAGGGCAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
*
68546373 AAGGGCAAAATAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
*
68546400 AAGGGCAAAACAGTCATTTCACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* * * * *
68546427 AAGGGTAGAACAGTCATTTTTCCACGT
1 AAGGGCAAAACAGTCATTTTACCTCAT
* *
68546454 AAGGGTAAAACAGTCATTTTACCTTAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
*
68546481 ATA-GGCAGAACAGTCATTTTATCC-CAT
1 A-AGGGCAAAACAGTCATTTTA-CCTCAT
*
68546508 AAGGGGAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAACAGTCATTTTACCTCAT
*
68546535 AAGGGCAGAACAGTCATTTTATCC-CAT
1 AAGGGCAAAACAGTCATTTTA-CCTCAT
**
68546562 AAGGGCAAAACAACCATTTTA
1 AAGGGCAAAACAGTCATTTTA
68546583 TCGATTAAGT
Statistics
Matches: 234, Mismatches: 24, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
26 5 0.02
27 224 0.96
28 5 0.02
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (27 bp):
AAGGGCAAAACAGTCATTTTACCTCAT
Found at i:68549903 original size:6 final size:6
Alignment explanation
Indices: 68549894--68549964 Score: 76
Period size: 6 Copynumber: 11.8 Consensus size: 6
68549884 TGGCCCATTG
*
68549894 CAGTAA CAGTAAA CAGT-A CAGTAA CAGTAA CAGT-A CAGTAA TAGTAAA
1 CAGTAA CAGT-AA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGT-AA
*
68549942 CAGT-G CAGTAA CAGTAAA CAGTA
1 CAGTAA CAGTAA CAGT-AA CAGTA
68549965 TGTATCTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
5 14 0.25
6 24 0.44
7 17 0.31
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
CAGTAA
Found at i:68549917 original size:18 final size:18
Alignment explanation
Indices: 68549894--68549964 Score: 117
Period size: 18 Copynumber: 4.0 Consensus size: 18
68549884 TGGCCCATTG
68549894 CAGTAACAGTAAACAGTA
1 CAGTAACAGTAAACAGTA
68549912 CAGTAACAGT-AACAGTA
1 CAGTAACAGTAAACAGTA
* *
68549929 CAGTAATAGTAAACAGTG
1 CAGTAACAGTAAACAGTA
68549947 CAGTAACAGTAAACAGTA
1 CAGTAACAGTAAACAGTA
68549965 TGTATCTCCT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
17 16 0.33
18 32 0.67
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (18 bp):
CAGTAACAGTAAACAGTA
Found at i:68549933 original size:35 final size:36
Alignment explanation
Indices: 68549894--68549964 Score: 117
Period size: 35 Copynumber: 2.0 Consensus size: 36
68549884 TGGCCCATTG
68549894 CAGTAACAGTAAACAGTACAGTAACAGT-AACAGTA
1 CAGTAACAGTAAACAGTACAGTAACAGTAAACAGTA
* *
68549929 CAGTAATAGTAAACAGTGCAGTAACAGTAAACAGTA
1 CAGTAACAGTAAACAGTACAGTAACAGTAAACAGTA
68549965 TGTATCTCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 26 0.79
36 7 0.21
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (36 bp):
CAGTAACAGTAAACAGTACAGTAACAGTAAACAGTA
Found at i:68550296 original size:27 final size:27
Alignment explanation
Indices: 68550266--68550496 Score: 241
Period size: 27 Copynumber: 8.6 Consensus size: 27
68550256 ATAAAAAGGA
* *
68550266 AAAATAGTCATTTTACCACATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
68550293 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
*
68550320 AAAACAGTCATTTCACCTCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
* * * * *
68550347 AGAATAGTCATTTTACCACGTAAGGTC
1 AAAACAGTCATTTTACCTCATAAGGGC
* * *
68550374 AAAGCAGTCATTTTACCTCATAAAGGT
1 AAAACAGTCATTTTACCTCATAAGGGC
* * *
68550401 AGAACAGCCATTTTATCC-CATAAGGGG
1 AAAACAGTCATTTTA-CCTCATAAGGGC
* * *
68550428 AAAATAATCATTTTACCTCATAAAGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
* *
68550455 AGAACAGTCATTTTATCC-CACAAGGGC
1 AAAACAGTCATTTTA-CCTCATAAGGGC
**
68550482 AAAACAACCATTTTA
1 AAAACAGTCATTTTA
68550497 TCGATTAAGG
Statistics
Matches: 165, Mismatches: 36, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.01
27 159 0.96
28 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCTCATAAGGGC
Found at i:68550329 original size:54 final size:54
Alignment explanation
Indices: 68550266--68550496 Score: 268
Period size: 54 Copynumber: 4.3 Consensus size: 54
68550256 ATAAAAAGGA
* * * *
68550266 AAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTA-CCTCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCC-CATAAGGGC
* * * * *
68550320 AAAACAGTCATTTCACCTCATAAGGGCAGAATAGTCATTTTA-CCACGTAAGGTC
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCC-CATAAGGGC
* * * *
68550374 AAAGCAGTCATTTTACCTCATAAAGGTAGAACAGCCATTTTATCCCATAAGGGG
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
* * *
68550428 AAAATAATCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCACAAGGGC
1 AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
**
68550482 AAAACAACCATTTTA
1 AAAACAGTCATTTTA
68550497 TCGATTAAGG
Statistics
Matches: 150, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
54 148 0.99
55 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (54 bp):
AAAACAGTCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCCCATAAGGGC
Found at i:68550495 original size:81 final size:81
Alignment explanation
Indices: 68550266--68550498 Score: 276
Period size: 81 Copynumber: 2.9 Consensus size: 81
68550256 ATAAAAAGGA
* *
68550266 AAAATAGTCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCAT
1 AAAATAGTCATTTTACCACATAAAGGC-AAACAGTCATTTTACCTCATAAGGGCAAAACAGCCAT
*
68550331 TTCA-CCTCATAAGGGC
65 TTTATCCTCATAAGGGC
* * * * *
68550347 AGAATAGTCATTTTACCACGT-AAGGTCAAAGCAGTCATTTTACCTCATAAAGGTAGAACAGCCA
1 AAAATAGTCATTTTACCACATAAAGG-CAAA-CAGTCATTTTACCTCATAAGGGCAAAACAGCCA
*
68550411 TTTTATCC-CATAAGGGG
64 TTTTATCCTCATAAGGGC
* * * *
68550428 AAAATAATCATTTTACCTCATAAAGGCAGAACAGTCATTTTATCC-CACAAGGGCAAAACAACCA
1 AAAATAGTCATTTTACCACATAAAGGCA-AACAGTCATTTTA-CCTCATAAGGGCAAAACAGCCA
68550492 TTTTATC
64 TTTTATC
68550499 GATTAAGGGT
Statistics
Matches: 128, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
80 6 0.05
81 112 0.88
82 10 0.08
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (81 bp):
AAAATAGTCATTTTACCACATAAAGGCAAACAGTCATTTTACCTCATAAGGGCAAAACAGCCATT
TTATCCTCATAAGGGC
Found at i:68559734 original size:39 final size:39
Alignment explanation
Indices: 68559680--68559891 Score: 261
Period size: 40 Copynumber: 5.4 Consensus size: 39
68559670 AAACCAAGTA
* * * *
68559680 CCTTCGGAATTTAGCCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
*
68559719 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
* *
68559759 CCTTCGGGAC-TATCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTA-GCCGGATATAGTAACTCGCACAAATG
68559798 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
* *
68559838 CCTTCGGG-CTTAGCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCGGATA-TAGTAACTCGCACAAATG
*
68559876 CCTTCTGGACTTAGCC
1 CCTTCGGGACTTAGCC
68559892 CGGTTATCAT
Statistics
Matches: 155, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
37 1 0.01
38 28 0.18
39 62 0.40
40 64 0.41
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:68559757 original size:40 final size:40
Alignment explanation
Indices: 68559713--68559898 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
68559703 GCTACTTGCT
68559713 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
68559753 CAAATGCCTTCGGGAC-TATCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
68559792 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
68559832 CAAATGCCTTCGGG-CTTAG-CCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
68559870 CAAATGCCTTCTGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
68559899 CATCCGAATA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
37 1 0.01
38 27 0.20
39 48 0.36
40 56 0.42
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68559811 original size:79 final size:78
Alignment explanation
Indices: 68559713--68559898 Score: 277
Period size: 79 Copynumber: 2.4 Consensus size: 78
68559703 GCTACTTGCT
68559713 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC-TATCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTA-CCCGG
* *
68559777 -TTATAGTAACTCGCA
64 AAT-TAGTAACTAGCA
* *
68559792 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAGCCGGAA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTACCCGGAA
*
68559857 TTAGTCACTAGCA
66 TTAGTAACTAGCA
*
68559870 CAAATGCCTTCTGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
68559899 CATCCGAATA
Statistics
Matches: 98, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
78 42 0.43
79 56 0.57
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTACCCGGAA
TTAGTAACTAGCA
Found at i:68567810 original size:40 final size:40
Alignment explanation
Indices: 68567766--68567953 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
68567756 GCTACTTGCT
*
68567766 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
68567806 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
68567846 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
68567886 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
68567925 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
68567954 CATCCGAATA
Statistics
Matches: 139, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 103 0.74
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68575983 original size:28 final size:27
Alignment explanation
Indices: 68575938--68575997 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
68575928 CAGAAGCAGC
** *
68575938 ATCAGGTGGGCCTTAGCCTAATAACAGA
1 ATCAGGTGGGCCAAAGCCCAAT-ACAGA
68575966 ATCAGGTGGGCCAAAGCCCAATACAGA
1 ATCAGGTGGGCCAAAGCCCAATACAGA
68575993 ATCAG
1 ATCAG
68575998 TATCAGATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 10 0.34
28 19 0.66
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
ATCAGGTGGGCCAAAGCCCAATACAGA
Found at i:68576423 original size:27 final size:27
Alignment explanation
Indices: 68576393--68576457 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
68576383 GGGCATAATT
68576393 GTCATTCTAC-CATACAAGGGT-TTTACG
1 GTCATTCTACAC-TACAAGGGTATTT-CG
*
68576420 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTCTACACTACAAGGGTATTTCG
* *
68576447 GTGATTTTACA
1 GTCATTCTACA
68576458 AACTGGGATC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 30 0.88
28 4 0.12
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTCTACACTACAAGGGTATTTCG
Found at i:68576716 original size:19 final size:19
Alignment explanation
Indices: 68576681--68576718 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
68576671 GTGTGCGGCC
*
68576681 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTAGGCCCA
68576700 CACGA-CCCATCTAGGCCCA
1 CACGAGCCCAT-TAGGCCCA
68576719 ACGTGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.24, C:0.45, G:0.21, T:0.11
Consensus pattern (19 bp):
CACGAGCCCATTAGGCCCA
Found at i:68581025 original size:2 final size:2
Alignment explanation
Indices: 68581018--68581056 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
68581008 AGTGTCGACT
68581018 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68581057 GTTAAGCTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:68582961 original size:39 final size:39
Alignment explanation
Indices: 68582918--68583042 Score: 98
Period size: 39 Copynumber: 3.1 Consensus size: 39
68582908 ACGTGTACCG
68582918 GATTATTGGTCGCATGTGTAGTGCGTACCCGATAACTTC
1 GATTATTGGTCGCATGTGTAGTGCGTACCCGATAACTTC
* * * * *
68582957 GATTACGTGTGTAGTACTAAGTGTAG-GC-TACTACG-TGTAC--C
1 GATTA-TTG-GTCG--C-ATGTGTAGTGCGTAC-CCGAT-AACTTC
68582998 GAATTATTGGTCGCATGTGTAGTGCGTACCCGATAACTTC
1 G-ATTATTGGTCGCATGTGTAGTGCGTACCCGATAACTTC
68583038 GATTA
1 GATTA
68583043 CGTGTGTAGT
Statistics
Matches: 63, Mismatches: 10, Indels: 26
0.64 0.10 0.26
Matches are distributed among these distances:
37 7 0.11
38 7 0.11
39 13 0.21
40 7 0.11
41 7 0.11
42 8 0.13
43 7 0.11
44 7 0.11
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (39 bp):
GATTATTGGTCGCATGTGTAGTGCGTACCCGATAACTTC
Found at i:68583015 original size:81 final size:81
Alignment explanation
Indices: 68582880--68583076 Score: 376
Period size: 81 Copynumber: 2.4 Consensus size: 81
68582870 TTGTGAGGTC
*
68582880 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTGCGTA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATTATTGGTCGCATGTGTAGTGCGTA
68582945 CCCGATAACTTCGATT
66 CCCGATAACTTCGATT
*
68582961 ACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGAATTATTGGTCGCATGTGTAGTGCGTA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATTATTGGTCGCATGTGTAGTGCGTA
68583026 CCCGATAACTTCGATT
66 CCCGATAACTTCGATT
68583042 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA
68583077 TCAGATGGTT
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 113 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (81 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATTATTGGTCGCATGTGTAGTGCGTA
CCCGATAACTTCGATT
Found at i:68584119 original size:38 final size:38
Alignment explanation
Indices: 68584023--68584188 Score: 170
Period size: 38 Copynumber: 4.3 Consensus size: 38
68584013 CGAAGTATAA
* * * *
68584023 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGA-TTT
* * * *
68584062 AAACTCAGATATAATACCAGCACTAGGCCTGCGGGATTT
1 -AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
*
68584101 AACCCGGATATAATACCAGCACGAAGCCTGCGAGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* * ** *
68584139 AACCCGGATATAATTCTAGCATAAAGCCTGCGGGTCTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTT
68584178 AAGCCCGGATA
1 AA-CCCGGATA
68584189 CACATCAAAT
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 62 0.59
39 8 0.08
40 35 0.33
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:68584185 original size:78 final size:78
Alignment explanation
Indices: 68584023--68584188 Score: 185
Period size: 78 Copynumber: 2.1 Consensus size: 78
68584013 CGAAGTATAA
* * * * *
68584023 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAG
1 AACCCGGATATAACACCAGCACGAAGCCTACGAGACTTTAAACCCAGATATAATACCAGCACTAA
68584088 GCCTGCGGGATTT
66 GCCTGCGGGATTT
* * * * *
68584101 AACCCGGATATAATACCAGCACGAAGCCTGCGAGA-TTT-AACCCGGATATAATTCTAGCA-TAA
1 AACCCGGATATAACACCAGCACGAAGCCTACGAGACTTTAAACCCAGATATAATACCAGCACT-A
*
68584163 AGCCTGCGGGTCTTT
65 AGCCTGCGGG-ATTT
68584178 AAGCCCGGATA
1 AA-CCCGGATA
68584189 CACATCAAAT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
75 1 0.01
76 27 0.36
77 8 0.11
78 38 0.51
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (78 bp):
AACCCGGATATAACACCAGCACGAAGCCTACGAGACTTTAAACCCAGATATAATACCAGCACTAA
GCCTGCGGGATTT
Found at i:68589384 original size:13 final size:12
Alignment explanation
Indices: 68589358--68589393 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
68589348 GGCAACCTAA
68589358 TTTTATTTTCTT
1 TTTTATTTTCTT
68589370 TTTTACTTTT-TT
1 TTTTA-TTTTCTT
68589382 TTTTATTTTCTT
1 TTTTATTTTCTT
68589394 GCATGTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 4 0.18
12 14 0.64
13 4 0.18
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTATTTTCTT
Found at i:68590333 original size:97 final size:96
Alignment explanation
Indices: 68590167--68590344 Score: 248
Period size: 97 Copynumber: 1.8 Consensus size: 96
68590157 GGAATTAAAA
* * *
68590167 AAATTAAGAGTGCGTTGGGCTGAGCAACCGGGTGGCGTGCTTCGGTTGTTATTCCATTTCGCGTT
1 AAATTAAGAGTGCGTTGGGCTGAGCAACCGGGTGGCGTGCTTCGGTTGTCATTCCACTTCGCGTC
68590232 AAAAGGGCCAACACATTCTTAAACAAATAAT
66 AAAAGGGCCAACACATTCTTAAACAAATAAT
* * * * * * *
68590263 AAATTACGAGTGTGTTGGGCTGAGTATCCGGGGTGGGGTGCTTGGGTTGTCATTCCACTTCGTGT
1 AAATTAAGAGTGCGTTGGGCTGAGCAACC-GGGTGGCGTGCTTCGGTTGTCATTCCACTTCGCGT
*
68590328 CAAAAGGGCCAATACAT
65 CAAAAGGGCCAACACAT
68590345 AAAAAAAAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
96 25 0.36
97 45 0.64
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (96 bp):
AAATTAAGAGTGCGTTGGGCTGAGCAACCGGGTGGCGTGCTTCGGTTGTCATTCCACTTCGCGTC
AAAAGGGCCAACACATTCTTAAACAAATAAT
Found at i:68592272 original size:17 final size:15
Alignment explanation
Indices: 68592236--68592275 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
68592226 TTATATAACC
68592236 ATATATTTATTACAA
1 ATATATTTATTACAA
*
68592251 ATATATTATATTTCAA
1 ATATATT-TATTACAA
68592267 ATTATATTT
1 A-TATATTT
68592276 GCCTTGTCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 7 0.32
16 9 0.41
17 6 0.27
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATATTTATTACAA
Found at i:68592455 original size:20 final size:19
Alignment explanation
Indices: 68592422--68592483 Score: 74
Period size: 20 Copynumber: 3.3 Consensus size: 19
68592412 AATAATTTTT
68592422 AAAAATTAAATAAATAATA
1 AAAAATTAAATAAATAATA
* *
68592441 AAAAATTAAATTAAATATTT
1 AAAAATTAAA-TAAATAATA
*
68592461 AAAAATT--ATAAAAAATA
1 AAAAATTAAATAAATAATA
68592478 AAAAAT
1 AAAAAT
68592484 ACGACACTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 12 0.32
18 1 0.03
19 10 0.27
20 14 0.38
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAAATTAAATAAATAATA
Found at i:68596410 original size:46 final size:45
Alignment explanation
Indices: 68596334--68596422 Score: 115
Period size: 46 Copynumber: 2.0 Consensus size: 45
68596324 GAAGCAAATA
* ** * *
68596334 AAAACCTAATATAATAGAGAAATAGGTAAAACTTAAATTCTTAAT
1 AAAACCTAATATAATAAAGAAATAAATAAAACTAAAACTCTTAAT
*
68596379 AAAACCTGATATAATAAAGAAAATAAATAAAACTAAAACTCTTA
1 AAAACCTAATATAATAAAG-AAATAAATAAAACTAAAACTCTTA
68596423 TTCCAATAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 17 0.46
46 20 0.54
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.26
Consensus pattern (45 bp):
AAAACCTAATATAATAAAGAAATAAATAAAACTAAAACTCTTAAT
Found at i:68604064 original size:75 final size:75
Alignment explanation
Indices: 68603978--68604121 Score: 234
Period size: 75 Copynumber: 1.9 Consensus size: 75
68603968 CCTGGCACAC
* * *
68603978 GGGCGTGTGACTTGGCCGTGTGATATCAATTTGTTCATGCATTGCAAAATAGAGAGTTACACGGG
1 GGGCGTGTGACTTGGCCATGTGACATCAATTTGTTCATGCATTGCAAAACAGAGAGTTACACGGG
68604043 TTAGTGACAT
66 TTAGTGACAT
* * *
68604053 GGGCGTGTGACTTGGTCATGTGACATCAATTTGTTTATGCATTGCAAAACAGAGAGTTACACGGT
1 GGGCGTGTGACTTGGCCATGTGACATCAATTTGTTCATGCATTGCAAAACAGAGAGTTACACGGG
68604118 TTAG
66 TTAG
68604122 GGATATAAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 63 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (75 bp):
GGGCGTGTGACTTGGCCATGTGACATCAATTTGTTCATGCATTGCAAAACAGAGAGTTACACGGG
TTAGTGACAT
Found at i:68606256 original size:40 final size:40
Alignment explanation
Indices: 68606138--68606354 Score: 231
Period size: 40 Copynumber: 5.5 Consensus size: 40
68606128 AACCGAGCTT
* * * * *
68606138 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * * ** * *
68606177 CTTCGGGTCTTAACTCGGATTTGGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * *
68606217 CTTCGGGTCTTAGCCCAGATATAA-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGC
* *
68606257 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
*
68606297 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
68606337 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
68606355 GTATCATTCA
Statistics
Matches: 148, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 9 0.06
40 138 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:68608451 original size:25 final size:25
Alignment explanation
Indices: 68608423--68608512 Score: 101
Period size: 25 Copynumber: 3.6 Consensus size: 25
68608413 GGTTATAGAT
*
68608423 TTCAGCTCATATGAGCTTATTGTTA
1 TTCAGCTCATAAGAGCTTATTGTTA
* *
68608448 TTCAGTTCAGAAGAGCTTATTGTTA
1 TTCAGCTCATAAGAGCTTATTGTTA
* ** *
68608473 TTTAGCTCGGAGGAGCTTATTGTT-
1 TTCAGCTCATAAGAGCTTATTGTTA
*
68608497 TACAGCTCATAAGAGC
1 TTCAGCTCATAAGAGC
68608513 ATACTGATTC
Statistics
Matches: 53, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
24 11 0.21
25 42 0.79
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.38
Consensus pattern (25 bp):
TTCAGCTCATAAGAGCTTATTGTTA
Found at i:68610322 original size:42 final size:42
Alignment explanation
Indices: 68610219--68610425 Score: 195
Period size: 42 Copynumber: 4.9 Consensus size: 42
68610209 TTAGGGTTAA
* *
68610219 TGAGATTACGTATAAGACCATATCTGGGATATGGCATC-ATT
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATT
* *
68610260 ATG-GATTTCGTATAAGACCATATCTGAGATATGGCATCGATT
1 -TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATT
* * *
68610302 TGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATCGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATT
* * * *
68610344 CGAGACATT-GTGTAAGACCATAGCTGGGCTATCGGCATCGATATT
1 TGAGA-TTTCGTGTAAGACCATATCTGGGATAT-GGCATCG--ATT
* ** * * *
68610389 TGTGATCCCATGTAAGACCATGTCTAGGATATGGCAT
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
68610426 TGGCATCTCA
Statistics
Matches: 134, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
41 35 0.26
42 62 0.46
43 9 0.07
44 5 0.04
45 23 0.17
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATT
Found at i:68618826 original size:2 final size:2
Alignment explanation
Indices: 68618819--68618844 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
68618809 GCATAATAAC
68618819 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
68618845 TGATTCAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68619577 original size:3 final size:3
Alignment explanation
Indices: 68619571--68619614 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
68619561 ACCTTATGTT
68619571 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
68619615 TTAACCTTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:68633419 original size:22 final size:23
Alignment explanation
Indices: 68633346--68633456 Score: 100
Period size: 23 Copynumber: 4.7 Consensus size: 23
68633336 GCCATGATCG
*
68633346 GTAAGCTCCTCTTGAGCTGATGAACA
1 GTAAGCT-CTATTGAGCTGA--AACA
* *
68633372 CTAAGCTTTATTGAGCTGAAACA
1 GTAAGCTCTATTGAGCTGAAACA
*
68633395 GTAAGCTCTATTGAGTTG-AACA
1 GTAAGCTCTATTGAGCTGAAACA
* *
68633417 GTAAACTC-ATATGAGCTGAAACG
1 GTAAGCTCTAT-TGAGCTGAAACA
* *
68633440 GTAAGCTCCAATGAGCT
1 GTAAGCTCTATTGAGCT
68633457 AAAAATAGTC
Statistics
Matches: 71, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
21 2 0.03
22 17 0.24
23 35 0.49
24 1 0.01
25 10 0.14
26 6 0.08
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:68633479 original size:24 final size:26
Alignment explanation
Indices: 68633452--68633506 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
68633442 AAGCTCCAAT
*
68633452 GAGCTAAAA-AT-AGTCAGCTCATAC
1 GAGCTAAAATATCAGTAAGCTCATAC
*
68633476 GAGCTAAAATATCGGTAAGCTCATAC
1 GAGCTAAAATATCAGTAAGCTCATAC
68633502 GAGCT
1 GAGCT
68633507 GTAGTGAGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 9 0.33
25 2 0.07
26 16 0.59
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
GAGCTAAAATATCAGTAAGCTCATAC
Found at i:68633501 original size:26 final size:25
Alignment explanation
Indices: 68633417--68633506 Score: 80
Period size: 24 Copynumber: 3.7 Consensus size: 25
68633407 GAGTTGAACA
* * *
68633417 GTAAACTCATATGAGCT-GAAA-CG
1 GTAAGCTCATACGAGCTAAAAATCG
* *
68633440 GTAAGCTCCA-ATGAGCTAAAAAT-A
1 GTAAGCT-CATACGAGCTAAAAATCG
*
68633464 GTCAGCTCATACGAGCTAAAATATCG
1 GTAAGCTCATACGAGCTAAAA-ATCG
68633490 GTAAGCTCATACGAGCT
1 GTAAGCTCATACGAGCT
68633507 GTAGTGAGTC
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
23 15 0.28
24 21 0.39
25 2 0.04
26 16 0.30
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (25 bp):
GTAAGCTCATACGAGCTAAAAATCG
Found at i:68636330 original size:47 final size:47
Alignment explanation
Indices: 68636272--68636393 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
68636262 GCATTGGCAC
68636272 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
68636319 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
68636366 TAAGATAAGGATATCATGTAAAACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
68636394 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:68636498 original size:55 final size:55
Alignment explanation
Indices: 68636372--68636568 Score: 249
Period size: 55 Copynumber: 3.6 Consensus size: 55
68636362 TTGGTAAGAT
* * * *
68636372 AAGGATATCATGTAAAACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGG-A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* * *
68636426 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCA
* * *
68636482 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* *
68636534 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
68636569 ATGGTAAGTT
Statistics
Matches: 125, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.03
53 33 0.26
54 41 0.33
55 42 0.34
56 5 0.04
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
Found at i:68636580 original size:53 final size:54
Alignment explanation
Indices: 68636372--68636579 Score: 240
Period size: 53 Copynumber: 3.9 Consensus size: 54
68636362 TTGGTAAGAT
* * * *
68636372 AAGGATATCATGTAAAACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
68636426 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
68636481 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
68636534 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
68636580 AAAAAGGAAA
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
52 4 0.03
53 42 0.32
54 41 0.31
55 42 0.32
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:68638694 original size:66 final size:69
Alignment explanation
Indices: 68638602--68638731 Score: 169
Period size: 66 Copynumber: 1.9 Consensus size: 69
68638592 ACATGGTGAA
* *
68638602 CACTTAGAACCACTCATGCGACCTAGC-CGA-TT-TGTCT-CGTAGCTCTCTTGTCTACATGGTG
1 CACTTAGAACCACGCATGCGACCTAGCAC-ATTTATCTCTACGTAGCTCTCTTGTCTACATGGTG
68638663 TCCTT
65 TCCTT
* *
68638668 CACTTGGAATCACGCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG
1 CACTTAGAACCACGCATGCGACCTAGC-ACATTTATCTCT-ACGTAGCTCTCTTGTCTACATGG
68638732 GATACATCCC
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
66 24 0.44
67 1 0.02
68 3 0.06
69 4 0.07
71 22 0.41
ACGTcount: A:0.20, C:0.30, G:0.18, T:0.32
Consensus pattern (69 bp):
CACTTAGAACCACGCATGCGACCTAGCACATTTATCTCTACGTAGCTCTCTTGTCTACATGGTGT
CCTT
Found at i:68638783 original size:68 final size:68
Alignment explanation
Indices: 68638636--68638791 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
68638626 AGCCGATTTG
* * * * *
68638636 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
68638701 TATC
65 TATA
* *
68638705 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
68638767 ATATAGTA
62 ATATA-TA
68638775 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
68638792 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:68646242 original size:68 final size:68
Alignment explanation
Indices: 68646095--68646250 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
68646085 AGCCGATTTG
* * * * *
68646095 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
68646160 TATC
65 TATA
* *
68646164 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
68646226 ATATAGTA
62 ATATA-TA
68646234 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
68646251 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:68646402 original size:2 final size:2
Alignment explanation
Indices: 68646395--68646426 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
68646385 CAACATCAGC
68646395 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68646427 ATAGGCTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:68650505 original size:43 final size:43
Alignment explanation
Indices: 68650457--68650594 Score: 165
Period size: 43 Copynumber: 3.2 Consensus size: 43
68650447 TGGTTATGTA
68650457 TAAGACCATGTCTGAGACATTGGCATC-ATAT-TGCGATTATC-TG
1 TAAGACCATGTCTGAGACATTGGCATCGATATAT--GATT-TCATG
* *
68650500 TAAGACCATGTTTGAGACATTGGCATCGTTATATGATTTCATG
1 TAAGACCATGTCTGAGACATTGGCATCGATATATGATTTCATG
* * * **
68650543 TAAGACCATGTCTGGGACATTGGCAACGATATGTGATAACATG
1 TAAGACCATGTCTGAGACATTGGCATCGATATATGATTTCATG
68650586 TAAGACCAT
1 TAAGACCAT
68650595 ATTTGGGATA
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
42 2 0.02
43 77 0.93
44 3 0.04
45 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (43 bp):
TAAGACCATGTCTGAGACATTGGCATCGATATATGATTTCATG
Found at i:68655414 original size:46 final size:49
Alignment explanation
Indices: 68655363--68655499 Score: 171
Period size: 46 Copynumber: 2.9 Consensus size: 49
68655353 ATGGTTGAGC
68655363 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTAG
* * * *
68655410 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTA-G
68655455 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
68655500 GTCCGAGTTC
Statistics
Matches: 73, Mismatches: 8, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
45 3 0.04
46 29 0.40
47 29 0.40
48 2 0.03
50 3 0.04
51 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (49 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACTAG
Found at i:68662829 original size:46 final size:45
Alignment explanation
Indices: 68662779--68662951 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
68662769 TGGTTGAGCA
68662779 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
68662825 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
68662870 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
68662918 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68662952 GGGGGGGTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:68662935 original size:93 final size:93
Alignment explanation
Indices: 68662776--68662946 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
68662766 GGATGGTTGA
* *
68662776 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68662841 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
68662869 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68662934 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68662947 ACTTAGGGGG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:68671958 original size:40 final size:40
Alignment explanation
Indices: 68671903--68672108 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
68671893 TATTCGAATG
68671903 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
68671943 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
68671983 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
68672023 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
68672063 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
68672103 ATATCC
1 ATATCC
68672109 AGCTAAATCC
Statistics
Matches: 155, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 153 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:68685356 original size:28 final size:28
Alignment explanation
Indices: 68685324--68685426 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
68685314 ATTGCATGAC
* * *
68685324 TATGAGTGTGATCGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
68685352 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * *
68685380 TAAGAATGTGATTGGGCCCGGTGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
68685408 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
68685427 AAAAGGGCCA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.22, C:0.17, G:0.37, T:0.24
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:68689586 original size:40 final size:40
Alignment explanation
Indices: 68689531--68689672 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
68689521 TATTCGAATG
68689531 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
68689571 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
68689611 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
68689651 ATATCC-GGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
68689673 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.14
40 79 0.84
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:68694306 original size:29 final size:29
Alignment explanation
Indices: 68694246--68694321 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
68694236 CATACATGTT
*
68694246 TATGGCCCACTAGGCC-CAATCTAATTCA
1 TATGGCCCACTAGGCCAAAATCTAATTCA
* *
68694274 TATGGCCCATTAGGCCAAAATC-ACATTTA
1 TATGGCCCACTAGGCCAAAATCTA-ATTCA
68694303 TATGGCCCACTAGGCCAAA
1 TATGGCCCACTAGGCCAAA
68694322 TAACTTTCAC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 16 0.38
29 26 0.62
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.24
Consensus pattern (29 bp):
TATGGCCCACTAGGCCAAAATCTAATTCA
Found at i:68696182 original size:29 final size:28
Alignment explanation
Indices: 68696115--68696186 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
68696105 AAAATTGTAC
* * *
68696115 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
68696143 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
68696172 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68696187 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:68697656 original size:16 final size:16
Alignment explanation
Indices: 68697632--68697680 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
68697622 ACTTAGCCAA
*
68697632 TCGGTATTTCAGCTTT
1 TCGGCATTTCAGCTTT
*
68697648 TCGGCATTTTAGCTTT
1 TCGGCATTTCAGCTTT
68697664 TCGGCATTTCAGCTTT
1 TCGGCATTTCAGCTTT
68697680 T
1 T
68697681 GCCGATCTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.12, C:0.20, G:0.18, T:0.49
Consensus pattern (16 bp):
TCGGCATTTCAGCTTT
Done.