Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 221 of 433
Found at i:68701917 original size:29 final size:29
Alignment explanation
Indices: 68701853--68701959 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
68701843 TTACATAATG
* * **
68701853 CATATGGTCCACTAGGCCC-AATCTCATT
1 CATATGGCCCAATAGGCCCAAATAACATT
*
68701881 CATATGGCCTAATAGGCCCAAATAACATT
1 CATATGGCCCAATAGGCCCAAATAACATT
* * *
68701910 CATTTGGCCCATTAGGCCCAAATTACATT
1 CATATGGCCCAATAGGCCCAAATAACATT
* *
68701939 TATATGGCCCACTAGGCCCAA
1 CATATGGCCCAATAGGCCCAA
68701960 TCACTTTCAC
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 16 0.24
29 50 0.76
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (29 bp):
CATATGGCCCAATAGGCCCAAATAACATT
Found at i:68702195 original size:8 final size:8
Alignment explanation
Indices: 68702182--68702210 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
68702172 GTAGCCAAAC
68702182 TTTCGGCA
1 TTTCGGCA
68702190 TTTCGGCA
1 TTTCGGCA
68702198 TTTCGGCA
1 TTTCGGCA
68702206 TTTCG
1 TTTCG
68702211 ATATTTTGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.24, G:0.24, T:0.41
Consensus pattern (8 bp):
TTTCGGCA
Found at i:68702216 original size:16 final size:16
Alignment explanation
Indices: 68702182--68702216 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
68702172 GTAGCCAAAC
*
68702182 TTTCGGCATTTCGGCA
1 TTTCGGCATTTCGACA
*
68702198 TTTCGGCATTTCGATA
1 TTTCGGCATTTCGACA
68702214 TTT
1 TTT
68702217 TGGCTTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.46
Consensus pattern (16 bp):
TTTCGGCATTTCGACA
Found at i:68703494 original size:24 final size:24
Alignment explanation
Indices: 68703454--68703515 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
68703444 GATTATGTAG
68703454 AAAGAATAAAGAAATGAA-AAAAAA
1 AAAGAA-AAAGAAATGAAGAAAAAA
* *
68703478 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAGAAAAAA
*
68703503 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
68703516 AAAAAAGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.16
24 12 0.38
25 15 0.47
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAGAAAAAA
Found at i:68703765 original size:7 final size:7
Alignment explanation
Indices: 68703753--68703781 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
68703743 CTTGGTATCA
68703753 TTGATGT
1 TTGATGT
68703760 TTGATGT
1 TTGATGT
68703767 TTGATGT
1 TTGATGT
68703774 TTGATGT
1 TTGATGT
68703781 T
1 T
68703782 GTGGTGGTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.28, T:0.59
Consensus pattern (7 bp):
TTGATGT
Found at i:68704720 original size:29 final size:29
Alignment explanation
Indices: 68704687--68704751 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
68704677 GTGACGAGAT
*
68704687 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
68704716 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
68704745 CGGCACT
1 TGGCACT
68704752 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:68711379 original size:25 final size:24
Alignment explanation
Indices: 68711338--68711400 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
68711328 GATTATGTAG
68711338 AAAGAATAAAGAAATGAAAAAAAAA
1 AAAGAA-AAAGAAATGAAAAAAAAA
* * *
68711363 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAAAAAAAA
*
68711388 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
68711401 AAAAAAGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 6 0.19
25 26 0.81
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAAAAAAAA
Found at i:68712598 original size:29 final size:29
Alignment explanation
Indices: 68712565--68712629 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
68712555 GTGACGAGAT
*
68712565 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
68712594 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
68712623 CGGCACT
1 TGGCACT
68712630 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:68736967 original size:181 final size:181
Alignment explanation
Indices: 68736663--68737026 Score: 719
Period size: 181 Copynumber: 2.0 Consensus size: 181
68736653 CACATGGTAG
68736663 CTTCAGTGGATACGCAATCTCGCGCATACTTGTTGAGTTTCACAAATTCAGGTTCATACTCCGTC
1 CTTCAGTGGATACGCAATCTCGCGCATACTTGTTGAGTTTCACAAATTCAGGTTCATACTCCGTC
68736728 ACAGTCTTACTACCTTGCTTCAACTCTAAACATTTCTTCCTTTTCTGGTCTATAACCTCTGGCTA
66 ACAGTCTTACTACCTTGCTTCAACTCTAAACATTTCTTCCTTTTCTGGTCTATAACCTCTGGCTA
68736793 ATATACTTCTTTTGAAACTCTTCCTGGAAGAATTCCCAAGCTACTCTCTCT
131 ATATACTTCTTTTGAAACTCTTCCTGGAAGAATTCCCAAGCTACTCTCTCT
*
68736844 CTTCAGTGGATACGCACTCTCGCGCATACTTGTTGAGTTTCACAAATTCAGGTTCATACTCCGTC
1 CTTCAGTGGATACGCAATCTCGCGCATACTTGTTGAGTTTCACAAATTCAGGTTCATACTCCGTC
68736909 ACAGTCTTACTACCTTGCTTCAACTCTAAACATTTCTTCCTTTTCTGGTCTATAACCTCTGGCTA
66 ACAGTCTTACTACCTTGCTTCAACTCTAAACATTTCTTCCTTTTCTGGTCTATAACCTCTGGCTA
68736974 ATATACTTCTTTTGAAACTCTTCCTGGAAGAATTCCCAAGCTACTCTCTCT
131 ATATACTTCTTTTGAAACTCTTCCTGGAAGAATTCCCAAGCTACTCTCTCT
68737025 CT
1 CT
68737027 CGGTACCACA
Statistics
Matches: 182, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
181 182 1.00
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.37
Consensus pattern (181 bp):
CTTCAGTGGATACGCAATCTCGCGCATACTTGTTGAGTTTCACAAATTCAGGTTCATACTCCGTC
ACAGTCTTACTACCTTGCTTCAACTCTAAACATTTCTTCCTTTTCTGGTCTATAACCTCTGGCTA
ATATACTTCTTTTGAAACTCTTCCTGGAAGAATTCCCAAGCTACTCTCTCT
Found at i:68739127 original size:94 final size:92
Alignment explanation
Indices: 68738973--68739144 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 92
68738963 ATATCTGTGC
*
68738973 CGATGTCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAGCCGATGCATGTCCCAGACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAGCCGATGCATGTCCCAGACAT
68739038 GTCTTACACTAGCACTCGTCTTGATGT
66 GTCTTACACTAGCACTCGTCTTGATGT
* * * *
68739065 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTC-TCATAATGTCA-TCGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-T--TGT-AGCCGATGCATGTCCCAG
68739128 ACATGTCTTACACTAGC
62 ACATGTCTTACACTAGC
68739145 TCACGCAAGT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
91 2 0.03
92 33 0.46
94 35 0.49
95 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (92 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCACTCGTCTTGATGT
Found at i:68740847 original size:42 final size:42
Alignment explanation
Indices: 68740745--68740904 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 42
68740735 AGCTCGTACA
* * *
68740745 ATGCCAACGTCCCAGGCATGGTCTTACATGTAATCATATA-G
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCATATATG
* *
68740786 CCATGCC-ACTTTCCCAGACAGGGTCTTACACGAAATCATATATG
1 --ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCATATATG
* * *
68740830 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCATATAT-G
* ** *
68740874 ATGCCAACGTCTCAGATGTGGTTTTACACGA
1 ATGCCAACGTCCCAGACATGGTCTTACACGA
68740905 TAACAAATAT
Statistics
Matches: 97, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
42 27 0.28
43 43 0.44
44 27 0.28
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCATATATG
Found at i:68742019 original size:21 final size:19
Alignment explanation
Indices: 68741985--68742023 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
68741975 AGCAAATAGG
68741985 TACTTTAACATTTAGCACGC
1 TACTTTAACATTTA-CACGC
*
68742005 TACTTTTACATTTTACACG
1 TACTTTAACA-TTTACACG
68742024 ATTAAGTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (19 bp):
TACTTTAACATTTACACGC
Found at i:68744804 original size:27 final size:28
Alignment explanation
Indices: 68744734--68744795 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
68744724 AATCACAACT
* **
68744734 AAGAATAGCCTTTGTGGTGAACTCTGAA
1 AAGAATAACCTTTGTGGCAAACTCTGAA
68744762 AAGAATAACCTTTGTGGCAAACTCTGAA
1 AAGAATAACCTTTGTGGCAAACTCTGAA
*
68744790 AGGAAT
1 AAGAAT
68744796 GTCTTTGTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.26
Consensus pattern (28 bp):
AAGAATAACCTTTGTGGCAAACTCTGAA
Found at i:68744809 original size:27 final size:28
Alignment explanation
Indices: 68744734--68744809 Score: 73
Period size: 28 Copynumber: 2.8 Consensus size: 28
68744724 AATCACAACT
* ***
68744734 AAGAATAGCCTTTGTGGTGAACTCTGAA
1 AAGAATAACCTTTGTGCCAAACTCTGAA
*
68744762 AAGAATAACCTTTGTGGCAAACTCTGAA
1 AAGAATAACCTTTGTGCCAAACTCTGAA
* **
68744790 AGGAAT-GTCTTTGTGCCAAA
1 AAGAATAACCTTTGTGCCAAA
68744810 TTTTGAATGG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 11 0.27
28 30 0.73
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (28 bp):
AAGAATAACCTTTGTGCCAAACTCTGAA
Found at i:68747120 original size:43 final size:43
Alignment explanation
Indices: 68747027--68747134 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
68747017 AGTTACGATT
* * * *
68747027 ACATGTAAGACAATGTCTGGGACATTGGCATCGTATTATGATT
1 ACATGTAAGACCATGTTTGGGACAGTGGCATCGTATTATGATA
* * * *
68747070 GCGTGTAAGACCCTGTTTGGGACAGTGGCATCG-ATATGTGATA
1 ACATGTAAGACCATGTTTGGGACAGTGGCATCGTAT-TATGATA
*
68747113 ACATGTAAGACCATATTTGGGA
1 ACATGTAAGACCATGTTTGGGA
68747135 TATGGAATTT
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 2 0.04
43 50 0.96
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (43 bp):
ACATGTAAGACCATGTTTGGGACAGTGGCATCGTATTATGATA
Found at i:68751677 original size:14 final size:14
Alignment explanation
Indices: 68751660--68751686 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68751650 GGGGTGTCAA
68751660 TTTTGTGGTCCCGG
1 TTTTGTGGTCCCGG
68751674 TTTTGTGGTCCCG
1 TTTTGTGGTCCCG
68751687 AAACCACATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.22, G:0.33, T:0.44
Consensus pattern (14 bp):
TTTTGTGGTCCCGG
Found at i:68758925 original size:43 final size:43
Alignment explanation
Indices: 68758845--68758926 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
68758835 TGCGATTACA
* * *
68758845 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTGCG
1 TGTAAGACCATGTATGGGACAGTGGCATCGTATTGTGATTGCG
*
68758888 TGTAAGACCCTGTATGGGACAGTGGCATCG-ATATGTGAT
1 TGTAAGACCATGTATGGGACAGTGGCATCGTAT-TGTGAT
68758927 AACATCTAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTATGGGACAGTGGCATCGTATTGTGATTGCG
Found at i:68771107 original size:41 final size:40
Alignment explanation
Indices: 68770999--68771181 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
68770989 TATTCGAAAG
*
68770999 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
** *
68771039 ATATCCGGGCTAAGTCCTAAAGCCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
68771079 ATTATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 A-TATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
68771120 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
68771160 ATATCC-AGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
68771182 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 13 0.10
40 75 0.60
41 37 0.30
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:68771147 original size:81 final size:81
Alignment explanation
Indices: 68771000--68771181 Score: 244
Period size: 81 Copynumber: 2.3 Consensus size: 81
68770990 ATTCGAAAGA
* * *
68771000 TATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCTAAAGCCAT
1 TATCCAGGCCAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGCCAT
68771065 TTGTGCTAGTGACTAT
66 TTGTGCTAGTGACTAT
* * * *
68771081 TATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCAT
1 TATCCAGGCCAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGCCAT
*
68771146 TTGTGCGAGTTG-CTA-
66 TTGTGCTAG-TGACTAT
* *
68771161 TATCCA-GCTAAATCCCGAAGG
1 TATCCAGGCCAAGTCCCGAAGG
68771182 TACTTGGGTT
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
79 13 0.15
80 5 0.06
81 69 0.78
82 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (81 bp):
TATCCAGGCCAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCAAAGCCAT
TTGTGCTAGTGACTAT
Found at i:68773451 original size:47 final size:47
Alignment explanation
Indices: 68773382--68773477 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
68773372 ATTGAATTTA
68773382 AAGCTTGTTAAATTTGCTCTTAATATTTCCGAATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGAATAAGTTACTTAGTT
*
68773429 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGAATAAGTTACTTAGTT
68773476 AA
1 AA
68773478 AGAAAATTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGAATAAGTTACTTAGTT
Found at i:68774347 original size:45 final size:45
Alignment explanation
Indices: 68774269--68774396 Score: 131
Period size: 45 Copynumber: 2.9 Consensus size: 45
68774259 CGCACAGTAT
* * *
68774269 TATTCGGGCCTTT-GAGCCTAGCAAGCTACAATGCCGGTGAGAT-A
1 TATTCGGG-CTTTCGAGCCTAGCAGGCTACAATGCCAGTGAAATGA
* * *
68774313 CTATTTGGGCTTTCGAGCCTAGCAGGCTATAATGCCAGTTAAATGA
1 -TATTCGGGCTTTCGAGCCTAGCAGGCTACAATGCCAGTGAAATGA
* *
68774359 TA-TCGGGC-TTCGAGCCTAGCAGGCGA-AATGCTAGTGAA
1 TATTCGGGCTTTCGAGCCTAGCAGGCTACAATGCCAGTGAA
68774397 TGAATTTAGG
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
42 10 0.14
43 17 0.24
44 9 0.13
45 34 0.48
46 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (45 bp):
TATTCGGGCTTTCGAGCCTAGCAGGCTACAATGCCAGTGAAATGA
Found at i:68776158 original size:34 final size:34
Alignment explanation
Indices: 68776115--68776183 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
68776105 CTTGCTGGTG
68776115 GTTTATGATAACGATTGCATAAATGTATGTGAAT
1 GTTTATGATAACGATTGCATAAATGTATGTGAAT
68776149 GTTTATGATAACGATTGCATAAATGTATGTGAAT
1 GTTTATGATAACGATTGCATAAATGTATGTGAAT
68776183 G
1 G
68776184 AAGTGTAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.38
Consensus pattern (34 bp):
GTTTATGATAACGATTGCATAAATGTATGTGAAT
Found at i:68779298 original size:53 final size:53
Alignment explanation
Indices: 68779240--68779344 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 53
68779230 AAAAAAAAAA
* *
68779240 TTTAAAATGTTTTTATTGTTTAGTAACACCTGAGGTCCAGACTCAATGAATTT
1 TTTAAAATGTTTTTATCGTTTAGTAACACCCGAGGTCCAGACTCAATGAATTT
68779293 TTTAAAATGTTTTTATCGTTTAGTAACACCCGAGGTCCAGACTCAATGAATT
1 TTTAAAATGTTTTTATCGTTTAGTAACACCCGAGGTCCAGACTCAATGAATT
68779345 GGGTCAGGTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (53 bp):
TTTAAAATGTTTTTATCGTTTAGTAACACCCGAGGTCCAGACTCAATGAATTT
Found at i:68792458 original size:40 final size:40
Alignment explanation
Indices: 68792403--68792650 Score: 331
Period size: 40 Copynumber: 6.2 Consensus size: 40
68792393 TGAATGATAC
* * *
68792403 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
68792443 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
68792483 TCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
68792523 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
68792563 CCGGGCTAAGACCTGAAGGCATTTGTGTGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
68792602 CCTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CC-GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
68792643 CC-GGCTAA
1 CCGGGCTAA
68792651 ATTCCGAAGA
Statistics
Matches: 184, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 7 0.04
40 173 0.94
41 4 0.02
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:68819790 original size:27 final size:26
Alignment explanation
Indices: 68819719--68819833 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
68819709 TGGAGGAAGC
*
68819719 GTTCTGGTGGCTATGCTACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
68819746 GTTTCTGATGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
* *
68819774 GTTCTTGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
68819800 GTATCTGGTGACTGTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
68819827 GTTCTGG
1 GTTCTGG
68819834 CAGCCATACT
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 14 0.18
27 38 0.49
28 25 0.32
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:68823003 original size:39 final size:39
Alignment explanation
Indices: 68822956--68823138 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
68822946 AATGTTCGAG
68822956 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
68822995 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
68823034 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
68823073 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
68823113 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
68823139 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:68830433 original size:39 final size:39
Alignment explanation
Indices: 68830386--68830568 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
68830376 AATGTTCGAG
68830386 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
68830425 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
68830464 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
68830503 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
68830543 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
68830569 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:68832848 original size:52 final size:52
Alignment explanation
Indices: 68832765--68832866 Score: 186
Period size: 52 Copynumber: 2.0 Consensus size: 52
68832755 TGGAAATGGT
*
68832765 CTGTAACACCCCGTACCCGAGACCGTTGCCGGAGTCGGACACAAGGGGTTTG
1 CTGTAACACCCCGTACCCGAGACCGTCGCCGGAGTCGGACACAAGGGGTTTG
*
68832817 CTGTAACACCCCGTACCCGAGACCGTCGCCGGAGTCGGACACGAGGGGTT
1 CTGTAACACCCCGTACCCGAGACCGTCGCCGGAGTCGGACACAAGGGGTT
68832867 AACGGGCTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.21, C:0.32, G:0.31, T:0.16
Consensus pattern (52 bp):
CTGTAACACCCCGTACCCGAGACCGTCGCCGGAGTCGGACACAAGGGGTTTG
Found at i:68834245 original size:40 final size:40
Alignment explanation
Indices: 68834199--68834504 Score: 392
Period size: 40 Copynumber: 7.7 Consensus size: 40
68834189 AACTACCGTT
* * *
68834199 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCA
**
68834239 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
*
68834279 CCAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
*
68834319 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
68834360 CAAA-GCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
*
68834399 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
* * *
68834440 CAAA-GCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
*
68834480 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGTCCGGA
68834505 CATCATTCAA
Statistics
Matches: 247, Mismatches: 13, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
39 11 0.04
40 215 0.87
41 21 0.09
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:68834412 original size:120 final size:120
Alignment explanation
Indices: 68834236--68834504 Score: 443
Period size: 120 Copynumber: 2.2 Consensus size: 120
68834226 ATAGTAGCTC
* *
68834236 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGATCTTAGTC
1 GCACAAA-GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTC
* *
68834301 CGGATTTAGTAAC-TCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
65 CGGATTTAGTAACTTAGCACAAA-GCCTTCGGATCTTAGTCCGGATATAGTAACTTA
*
68834357 GCACAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTC
1 GCACAAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTC
*
68834421 CGGATTTAGTAACTTAGCACAAAGCCTTCGGATCTTAGTCCGGATATAGTCACTTA
65 CGGATTTAGTAACTTAGCACAAAGCCTTCGGATCTTAGTCCGGATATAGTAACTTA
68834477 GCACAAAGCCTTCGGGACTTAGCCCGGA
1 GCACAAAGCCTTCGGGACTTAGCCCGGA
68834505 CATCATTCAA
Statistics
Matches: 138, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
119 3 0.02
120 117 0.85
121 18 0.13
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (120 bp):
GCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCC
GGATTTAGTAACTTAGCACAAAGCCTTCGGATCTTAGTCCGGATATAGTAACTTA
Found at i:68838328 original size:49 final size:49
Alignment explanation
Indices: 68838268--68838525 Score: 439
Period size: 49 Copynumber: 5.3 Consensus size: 49
68838258 ATGAGATATA
68838268 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68838317 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
68838366 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* **
68838415 TATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGCA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
68838464 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA-TGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
68838511 TATAAATGTGATAAG
1 TATATATGTGATAAG
68838526 TTCCGAAGGG
Statistics
Matches: 200, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 16 0.08
48 2 0.01
49 182 0.91
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:68840946 original size:40 final size:40
Alignment explanation
Indices: 68840887--68841090 Score: 286
Period size: 40 Copynumber: 5.0 Consensus size: 40
68840877 AGGTCTCGAC
68840887 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
68840926 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA-T--T-CATGCTAGT
*
68840970 GATGTAT-CGGGCTAAGTCCCGAAGAGTATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
68841009 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
68841049 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
68841089 GA
1 GA
68841091 CGTGTATTCG
Statistics
Matches: 147, Mismatches: 12, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
39 20 0.14
40 88 0.60
41 1 0.01
42 1 0.01
43 21 0.14
44 16 0.11
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:68841033 original size:83 final size:80
Alignment explanation
Indices: 68840891--68841090 Score: 294
Period size: 83 Copynumber: 2.5 Consensus size: 80
68840881 CTCGACGATG
68840891 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
68840956 TCATGCATGCTAGTGATGT
66 TC--G--TGCTAGTGATAT
* *
68840975 AT-CGGGCTAAGTCCCGAAGAGTATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
68841039 TCGTGCTAGTGTTAT
66 TCGTGCTAGTGATAT
* * *
68841054 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
68841091 CGTGTATTCG
Statistics
Matches: 107, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
79 12 0.11
80 30 0.28
81 1 0.01
83 62 0.58
84 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCGTGCTAGTGATAT
Found at i:68844428 original size:49 final size:49
Alignment explanation
Indices: 68844368--68844721 Score: 590
Period size: 49 Copynumber: 7.3 Consensus size: 49
68844358 ATGAGATATA
68844368 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68844417 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
68844466 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
68844515 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* **
68844564 TATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTGCA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
68844613 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
68844660 TATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTG-AA-TGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
68844707 TATAAATGTGATAAG
1 TATATATGTGATAAG
68844722 TTCCGAAGGG
Statistics
Matches: 293, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 2 0.01
47 57 0.19
49 234 0.80
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:68846280 original size:80 final size:80
Alignment explanation
Indices: 68846196--68846344 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 80
68846186 TATGGTAACC
* * * *
68846196 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
68846260 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * *
68846276 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
68846341 CCGG
66 CCGG
68846345 TTATAATTTC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 57 0.98
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:68846365 original size:40 final size:40
Alignment explanation
Indices: 68846237--68846388 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
68846227 ATCACGATTT
* * **
68846237 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCAC-CA
* *
68846277 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
* * ***
68846317 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
* * *
68846357 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
68846389 CATTCAATTT
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 2 0.02
40 88 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCACCA
Found at i:68849972 original size:36 final size:36
Alignment explanation
Indices: 68849925--68849998 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
68849915 ACTACATTCA
68849925 CATGTAATTAACTAAATCGAAGCTTAAAAATTTTTG
1 CATGTAATTAACTAAATCGAAGCTTAAAAATTTTTG
68849961 CATGTAATTAACTAAATCGAAGCTTAAAAATTTTTG
1 CATGTAATTAACTAAATCGAAGCTTAAAAATTTTTG
68849997 CA
1 CA
68849999 CATTCATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (36 bp):
CATGTAATTAACTAAATCGAAGCTTAAAAATTTTTG
Found at i:68853176 original size:40 final size:40
Alignment explanation
Indices: 68853039--68853221 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
68853029 TCGAATGATG
* *
68853039 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * *
68853079 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAG-TA-TAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
68853117 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
68853156 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
68853197 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68853222 AGCGAGTCGT
Statistics
Matches: 117, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
37 17 0.15
38 14 0.12
39 14 0.12
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:68853177 original size:77 final size:82
Alignment explanation
Indices: 68853039--68853221 Score: 229
Period size: 77 Copynumber: 2.3 Consensus size: 82
68853029 TCGAATGATG
* * *
68853039 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
68853103 CGTGCGAGT-A-TA-AA
66 CGTGCGAGTCACTATAA
* **
68853117 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
68853179 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCACTATAA
**
68853197 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68853222 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
76 1 0.01
77 45 0.49
78 19 0.21
79 10 0.11
80 16 0.18
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCACTATAA
Found at i:68853254 original size:79 final size:77
Alignment explanation
Indices: 68853039--68853254 Score: 179
Period size: 77 Copynumber: 2.8 Consensus size: 77
68853029 TCGAATGATG
* * * * ** *
68853039 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
68853102 TCGTGCGAGTATAAA
63 TCGTGCGAGTATAAA
* * * *
68853117 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
68853182 TGCGAGTCACTATAA
66 TGCGAGT-A-TA-AA
** * ** * *
68853197 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
68853255 TACGTGATTC
Statistics
Matches: 113, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
77 44 0.39
78 19 0.17
79 24 0.21
80 26 0.23
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTATAAA
Found at i:68861135 original size:40 final size:39
Alignment explanation
Indices: 68861052--68861202 Score: 119
Period size: 40 Copynumber: 3.8 Consensus size: 39
68861042 TCGAATGATG
* * * *
68861052 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGA-T-AATAAA
* *
68861092 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGATAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGATAATAAA
* * * * *
68861132 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGATAATAAA
*
68861171 -CCTGGGTTAAGTCCCGAAGGCATTCGTGCGAG
1 TCC-GGGCTAAGT-CCGAAGGCATTCGTGCGAG
68861203 TCACTATAAC
Statistics
Matches: 89, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.34
40 47 0.53
41 9 0.10
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGATAATAAA
Found at i:68861192 original size:79 final size:82
Alignment explanation
Indices: 68861052--68861236 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 82
68861042 TCGAATGATG
* *
68861052 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATT
68861116 CGTGCGAGAT-AATA-AA
66 CGTGCGAG-TCAATATAA
* **
68861132 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTA-AACCTGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACC-GGACTAAGAT-CCGAAGGCA
*
68861193 TTCGTGCGAGTCACTATAA
64 TTCGTGCGAGTCAATATAA
**
68861212 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68861237 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
78 5 0.05
79 52 0.57
80 34 0.37
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:68861225 original size:40 final size:39
Alignment explanation
Indices: 68861105--68861244 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 39
68861095 GGACTAGGAT
* *
68861105 CCGAAGGCATTCGTGCGAGAT-AATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAG-TCACTAAA-CCGGGCTTAGTC
* * *
68861144 CCGAAGGCATTTGTGCAAGTTACTAAACCTGGG-TTAAGTC
1 CCGAAGGCATTCGTGCGAGTCACTAAACC-GGGCTT-AGTC
*
68861184 CCGAAGGCATTCGTGCGAGTCACTATAACCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTCACTA-AACCGGGCTTAGTC
* *
68861224 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
68861245 GTTATATCCG
Statistics
Matches: 85, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
38 4 0.05
39 27 0.32
40 48 0.56
41 6 0.07
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTCACTAAACCGGGCTTAGTC
Found at i:68862726 original size:40 final size:40
Alignment explanation
Indices: 68862689--68862874 Score: 250
Period size: 40 Copynumber: 4.7 Consensus size: 40
68862679 GCTACTCGTT
* *
68862689 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
68862729 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
68862769 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
68862809 CAAATGCCTTTGGGACTTAACCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCA
* *
68862850 CAAA-GCCTTCGGGAGTCAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68862875 CATCATTCGA
Statistics
Matches: 131, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
40 121 0.92
41 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:68869977 original size:28 final size:28
Alignment explanation
Indices: 68869937--68870018 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
68869927 GGAGGAAGCG
* *
68869937 TTCTAGTGGCTATGCTACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
68869965 TTCTGGTGGCTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
68869992 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
68870019 ATGTGGTGAC
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
26 8 0.16
27 17 0.34
28 25 0.50
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:68870031 original size:27 final size:26
Alignment explanation
Indices: 68869936--68870037 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
68869926 TGGAGGAAGC
* * *
68869936 GTTCTAGTGGCTATGCTACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
68869963 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTCTGCCAC-AATATCT
68869991 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
68870017 GTATGTGGTGACTCTGTCACA
1 GT-TCTGGTGGCTCTGCCACA
68870038 GTTTCTGGTG
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 9 0.13
27 33 0.49
28 25 0.37
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:68883910 original size:46 final size:46
Alignment explanation
Indices: 68883860--68884032 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
68883850 TGGTTGAGCA
68883860 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68883906 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
68883951 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
68883999 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68884033 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68884016 original size:93 final size:93
Alignment explanation
Indices: 68883857--68884027 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
68883847 GGATGGTTGA
* *
68883857 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68883922 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
68883950 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
68884015 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68884028 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:68900459 original size:48 final size:48
Alignment explanation
Indices: 68900406--68900546 Score: 138
Period size: 57 Copynumber: 2.8 Consensus size: 48
68900396 CATATATATC
* *
68900406 CCAATGCAATATCCCGGACATGGTCTTACATGGGATCAAAAACCGATG
1 CCAATGCAATGTCCCAGACATGGTCTTACATGGGATCAAAAACCGATG
* * *
68900454 CCAATGCCATGTCTGGAATGTCCCAGACATGGTCTTACATGGGATCAGATATCGATG
1 CC-A----ATG-C---AATGTCCCAGACATGGTCTTACATGGGATCAAAAACCGATG
* *
68900511 CCAATGCCATGTCCCAGACATTGTCTTACATGGGAT
1 CCAATGCAATGTCCCAGACATGGTCTTACATGGGAT
68900547 TACTCATAAC
Statistics
Matches: 77, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
48 29 0.38
49 1 0.01
51 1 0.01
52 3 0.04
53 3 0.04
54 1 0.01
56 1 0.01
57 38 0.49
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (48 bp):
CCAATGCAATGTCCCAGACATGGTCTTACATGGGATCAAAAACCGATG
Found at i:68915770 original size:40 final size:40
Alignment explanation
Indices: 68915719--68915868 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
68915709 TATAACACGT
*
68915719 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
* * *
68915759 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAGAATG--TCTC
* * *
68915799 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-C
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
* *
68915838 AGCATAATTGTCTTCGGG-CTTAGCCCGGATA
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATA
68915869 TCATTCAATT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 1 0.01
39 16 0.18
40 71 0.78
41 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
Found at i:68915853 original size:80 final size:79
Alignment explanation
Indices: 68915719--68915867 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
68915709 TATAACACGT
*
68915719 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
68915784 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
68915799 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
68915862 CCGGAT
64 CCGGAT
68915868 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:68923728 original size:40 final size:40
Alignment explanation
Indices: 68923683--68923850 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
68923673 CGGAATATAA
68923683 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
68923723 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
68923763 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
68923803 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
68923843 CCGGATAT
1 CCGGATAT
68923851 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68923833 original size:80 final size:80
Alignment explanation
Indices: 68923699--68923848 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
68923689 ATAACCACGT
* *
68923699 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
68923764 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
68923779 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
68923842 CCCGGAT
64 CCCGGAT
68923849 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:68926260 original size:40 final size:40
Alignment explanation
Indices: 68926159--68926261 Score: 136
Period size: 40 Copynumber: 2.6 Consensus size: 40
68926149 TACTTGCTCG
* * * *
68926159 AATGCCTTAGGGACATAGCCCAGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACA
* *
68926199 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACA
68926239 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
68926262 TTATCATACA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.02
40 55 0.98
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.20
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACA
Found at i:68930879 original size:28 final size:28
Alignment explanation
Indices: 68930847--68930945 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
68930837 GCAATAAGCC
*
68930847 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
68930875 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
68930903 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
68930932 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68930946 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:68938560 original size:28 final size:28
Alignment explanation
Indices: 68938528--68938626 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
68938518 GCAATAAGCC
*
68938528 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
68938556 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
68938584 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
68938613 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68938627 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:68944823 original size:40 final size:40
Alignment explanation
Indices: 68944712--68944927 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
68944702 AAGCCAAGTA
* * * * *
68944712 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
68944751 CCTTAGGGACATAGCCC-GATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68944790 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68944830 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
68944870 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
68944910 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68944928 TTATCATCAA
Statistics
Matches: 160, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 56 0.35
40 103 0.64
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68949239 original size:24 final size:24
Alignment explanation
Indices: 68949189--68949242 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
68949179 AATCGAATTT
*
68949189 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
68949213 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
68949237 GCACAC
1 GCACAC
68949243 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:68957653 original size:40 final size:40
Alignment explanation
Indices: 68957558--68957774 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
68957548 TGGATGATAA
*
68957558 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
68957599 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68957639 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
68957679 CCGAGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
68957719 CC-GGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
68957757 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68957775 TACTTGGCTT
Statistics
Matches: 158, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
37 2 0.01
38 29 0.18
39 16 0.10
40 83 0.53
41 24 0.15
42 4 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68965637 original size:40 final size:40
Alignment explanation
Indices: 68965543--68965785 Score: 316
Period size: 40 Copynumber: 6.1 Consensus size: 40
68965533 TGGATGATAA
* *
68965543 CCGGGCTAAGTCCTGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
68965584 CCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68965624 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68965664 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68965704 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
68965744 CC-GACTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
68965782 CCGG
1 CCGG
68965786 TTAAATCTCG
Statistics
Matches: 185, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
37 2 0.01
38 16 0.09
39 17 0.09
40 123 0.66
41 23 0.12
42 4 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68977841 original size:26 final size:26
Alignment explanation
Indices: 68977808--68977859 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
68977798 TCTTGATCTA
*
68977808 ATACAATACAAATTCAACCATTCAAT
1 ATACAATAAAAATTCAACCATTCAAT
68977834 ATACAATAAAAATTCAACCATTCAAT
1 ATACAATAAAAATTCAACCATTCAAT
68977860 CATTCATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.27
Consensus pattern (26 bp):
ATACAATAAAAATTCAACCATTCAAT
Found at i:68981656 original size:33 final size:33
Alignment explanation
Indices: 68981614--68981676 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
68981604 CCAATCTAAG
68981614 TCATATTTGATGTTATGTATGTTTAAAATGATA
1 TCATATTTGATGTTATGTATGTTTAAAATGATA
68981647 TCATATTTGATGTTATGTATGTTTAAAATG
1 TCATATTTGATGTTATGTATGTTTAAAATG
68981677 CTATTTAGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.32, C:0.03, G:0.16, T:0.49
Consensus pattern (33 bp):
TCATATTTGATGTTATGTATGTTTAAAATGATA
Found at i:68989387 original size:24 final size:24
Alignment explanation
Indices: 68989359--68989420 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
68989349 GGAAACACAA
* *
68989359 AATACACCACAAAGGTATTTACAG
1 AATACACCATAAAGGCATTTACAG
* *
68989383 AATACACCATAAATGCGTTTACAG
1 AATACACCATAAAGGCATTTACAG
*
68989407 AACACACCATAAAG
1 AATACACCATAAAG
68989421 ATGTCATAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.47, C:0.23, G:0.11, T:0.19
Consensus pattern (24 bp):
AATACACCATAAAGGCATTTACAG
Found at i:68991194 original size:16 final size:16
Alignment explanation
Indices: 68991173--68991281 Score: 76
Period size: 16 Copynumber: 6.7 Consensus size: 16
68991163 TGTAATGATA
*
68991173 TGTGAGCTATGTAATT
1 TGTGAGCTATGTAATG
*
68991189 TGTGAG-TCATAGTGATG
1 TGTGAGCT-AT-GTAATG
* *
68991206 TGTGAGCTCTATAATG
1 TGTGAGCTATGTAATG
** *
68991222 TGTGAGCTACAATGATG
1 TGTGAGCTA-TGTAATG
* * *
68991239 TGCGAGTTGTGTAATG
1 TGTGAGCTATGTAATG
**
68991255 TGCAAGCTATGTAATG
1 TGTGAGCTATGTAATG
68991271 TGTGAGCTATG
1 TGTGAGCTATG
68991282 AAAATATGCA
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
15 1 0.01
16 46 0.66
17 22 0.31
18 1 0.01
ACGTcount: A:0.25, C:0.09, G:0.30, T:0.36
Consensus pattern (16 bp):
TGTGAGCTATGTAATG
Found at i:68991238 original size:33 final size:31
Alignment explanation
Indices: 68991166--68991240 Score: 78
Period size: 33 Copynumber: 2.3 Consensus size: 31
68991156 TGCGAGTTGT
* * *
68991166 AATGATATGTGAGCTATGTAATTTGTGAGTC
1 AATGATGTGTGAGCTATATAATGTGTGAGTC
*
68991197 ATAGTGATGTGTGAGCTCTATAATGTGTGAGCTAC
1 A-A-TGATGTGTGAGCTATATAATGTGTGAG-T-C
68991232 AATGATGTG
1 AATGATGTG
68991241 CGAGTTGTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
31 1 0.03
32 1 0.03
33 30 0.83
34 2 0.06
35 2 0.06
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (31 bp):
AATGATGTGTGAGCTATATAATGTGTGAGTC
Found at i:68998725 original size:27 final size:29
Alignment explanation
Indices: 68998669--68998730 Score: 67
Period size: 27 Copynumber: 2.2 Consensus size: 29
68998659 TAAGAAACAC
* **
68998669 AAAA-ATCCTAAACAATTTTAAATATTTA
1 AAAATATCCTAAACAATTTGAAATAAATA
68998697 AAAATATCCT-AA-AATTTGAAATAAATA
1 AAAATATCCTAAACAATTTGAAATAAATA
68998724 AATAATA
1 AA-AATA
68998731 AAACCTAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 14 0.48
28 10 0.34
29 5 0.17
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.32
Consensus pattern (29 bp):
AAAATATCCTAAACAATTTGAAATAAATA
Found at i:68999153 original size:42 final size:37
Alignment explanation
Indices: 68999080--68999155 Score: 89
Period size: 37 Copynumber: 1.9 Consensus size: 37
68999070 TGATTAAACA
*
68999080 TTATAATATAATGTAATACTATATATTTTATTATATT
1 TTATAATATAATGTAATACTATATATATTATTATATT
*
68999117 TTATAATATAATAGTAGTACATTATATAGTAATTATTAT
1 TTATAATATAAT-GTAATAC--TATATA-T-ATTATTAT
68999156 CATATATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
37 12 0.38
38 6 0.19
40 6 0.19
41 1 0.03
42 7 0.22
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (37 bp):
TTATAATATAATGTAATACTATATATATTATTATATT
Found at i:68999359 original size:27 final size:26
Alignment explanation
Indices: 68999309--68999359 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
68999299 ATTATTTTAC
*
68999309 TATATATATATTAATAGTTCATATAA
1 TATATATAAATTAATAGTTCATATAA
* *
68999335 TATATAATAAATTGATAGTTTATAT
1 TATAT-ATAAATTAATAGTTCATAT
68999360 GTAACACCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.24
27 16 0.76
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (26 bp):
TATATATAAATTAATAGTTCATATAA
Found at i:69000766 original size:101 final size:100
Alignment explanation
Indices: 69000617--69000809 Score: 332
Period size: 101 Copynumber: 1.9 Consensus size: 100
69000607 CTTGTAGCCA
*
69000617 AAGTTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACA
1 AAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCTAATACA
69000682 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCG
65 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCG
* ** *
69000718 AAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGATACAC
1 AAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCTAATACAC
69000783 GTAGTAGCCTGCACTTAGTACTACACA
66 GTAGTAGCCTGCACTTAGTACTACACA
69000810 TGGGACCTCA
Statistics
Matches: 87, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
100 39 0.45
101 48 0.55
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (100 bp):
AAGTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCTAATACAC
GTAGTAGCCTGCACTTAGTACTACACACGTGATCG
Found at i:69000811 original size:49 final size:49
Alignment explanation
Indices: 69000620--69000809 Score: 245
Period size: 50 Copynumber: 3.8 Consensus size: 49
69000610 GTAGCCAAAG
* *
69000620 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AA
** * * *
69000670 CCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 TTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA
* * * *
69000720 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
1 -TTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
*
69000770 TTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
1 TTATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
69000810 TGGGACCTCA
Statistics
Matches: 118, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 36 0.31
50 44 0.37
51 38 0.32
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:69002341 original size:10 final size:10
Alignment explanation
Indices: 69002326--69002355 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
69002316 AATAGTAATG
69002326 TAATATATTA
1 TAATATATTA
69002336 TAATATATTA
1 TAATATATTA
69002346 T-ATATATTA
1 TAATATATTA
69002355 T
1 T
69002356 TTTATGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TAATATATTA
Found at i:69007594 original size:12 final size:12
Alignment explanation
Indices: 69007577--69007601 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69007567 TGCTTTTGTG
69007577 AGTTCAAATTAT
1 AGTTCAAATTAT
69007589 AGTTCAAATTAT
1 AGTTCAAATTAT
69007601 A
1 A
69007602 TTTTTTTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
AGTTCAAATTAT
Found at i:69013622 original size:79 final size:79
Alignment explanation
Indices: 69013527--69013686 Score: 320
Period size: 79 Copynumber: 2.0 Consensus size: 79
69013517 AACTTTGAGT
69013527 TATCGATAATATTTTCCATAAAATATCCGTTAATAAACACTGGAACTGTAAAACTGATGCATAAA
1 TATCGATAATATTTTCCATAAAATATCCGTTAATAAACACTGGAACTGTAAAACTGATGCATAAA
69013592 ACTGTTAAAACAGA
66 ACTGTTAAAACAGA
69013606 TATCGATAATATTTTCCATAAAATATCCGTTAATAAACACTGGAACTGTAAAACTGATGCATAAA
1 TATCGATAATATTTTCCATAAAATATCCGTTAATAAACACTGGAACTGTAAAACTGATGCATAAA
69013671 ACTGTTAAAACAGA
66 ACTGTTAAAACAGA
69013685 TA
1 TA
69013687 AAGCGTAATT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.29
Consensus pattern (79 bp):
TATCGATAATATTTTCCATAAAATATCCGTTAATAAACACTGGAACTGTAAAACTGATGCATAAA
ACTGTTAAAACAGA
Found at i:69015162 original size:46 final size:46
Alignment explanation
Indices: 69015095--69015264 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
69015085 AACCCGCCCC
* *
69015095 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
69015141 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
69015189 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
69015234 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
69015265 AGATGCTCAA
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 57 0.55
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:69015208 original size:93 final size:93
Alignment explanation
Indices: 69015100--69015270 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69015090 GCCCCTAAGT
* * *
69015100 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
69015165 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* *
69015193 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69015258 CGAGTTCAGATGC
66 CGAGTTCAGATGC
69015271 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:69015286 original size:46 final size:44
Alignment explanation
Indices: 69015143--69015286 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
69015133 CGCATCCATA
*
69015143 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCC-A---ACCATCT
* * * *
69015190 CA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCAG--ATGC-CAACCATCT
69015236 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGC-CAACCAT-CT
69015282 AGTGA
1 AGTGA
69015287 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 30 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCAACCATCT
Found at i:69032908 original size:28 final size:30
Alignment explanation
Indices: 69032845--69032914 Score: 81
Period size: 33 Copynumber: 2.3 Consensus size: 30
69032835 AGCAGTTTAC
*
69032845 GCCTTAGCCCTATACAGTATCAGTAAAGTCTGG
1 GCCTTAGCCCTATACAGTAACAGT--AG-CTGG
69032878 GCCTTAGCCCTATACAGTAACAGT-G-TGG
1 GCCTTAGCCCTATACAGTAACAGTAGCTGG
*
69032906 GCCTAAGCC
1 GCCTTAGCC
69032915 TAATTCAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 11 0.31
30 1 0.03
33 23 0.66
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (30 bp):
GCCTTAGCCCTATACAGTAACAGTAGCTGG
Found at i:69032923 original size:28 final size:28
Alignment explanation
Indices: 69032864--69032929 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
69032854 CTATACAGTA
*
69032864 TCAGTAA-AGTCTGGGCCTTAGCCCTAT
1 TCAGTAACAGTCTGGGCCTAAGCCCTAT
* *
69032891 ACAGTAACAGTGTGGGCCTAAG-CCTAAT
1 TCAGTAACAGTCTGGGCCTAAGCCCT-AT
*
69032919 TCAGTATCAGT
1 TCAGTAACAGT
69032930 ATAGTGGAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
27 9 0.28
28 23 0.72
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (28 bp):
TCAGTAACAGTCTGGGCCTAAGCCCTAT
Found at i:69035939 original size:42 final size:42
Alignment explanation
Indices: 69035880--69035963 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
69035870 TCTCGGACTG
*
69035880 ACCATCTGTCTGAGGATGGAACGCAGTACTGAAGTCCAACCT
1 ACCATCCGTCTGAGGATGGAACGCAGTACTGAAGTCCAACCT
* *
69035922 ACCATCCGTTTGAGGATGGAATGCAGTACTGAAGTCCAACCT
1 ACCATCCGTCTGAGGATGGAACGCAGTACTGAAGTCCAACCT
69035964 TGTACCCAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.23
Consensus pattern (42 bp):
ACCATCCGTCTGAGGATGGAACGCAGTACTGAAGTCCAACCT
Found at i:69053378 original size:14 final size:14
Alignment explanation
Indices: 69053355--69053388 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
69053345 GTTTTTAATA
69053355 CATG-TTTTAAAGT
1 CATGTTTTTAAAGT
69053368 CATGTTTTTAAAGT
1 CATGTTTTTAAAGT
*
69053382 TATGTTT
1 CATGTTT
69053389 CAAAAATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.53
Consensus pattern (14 bp):
CATGTTTTTAAAGT
Found at i:69055179 original size:28 final size:28
Alignment explanation
Indices: 69055114--69055214 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69055104 ATAGTGAATC
*
69055114 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69055143 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69055171 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69055201 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69055215 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69055264 original size:29 final size:29
Alignment explanation
Indices: 69055232--69055303 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
69055222 TTCGAGCTCG
*
69055232 CACACCCAGTGCCGTATATTTCCAGCATA
1 CACACCCAGTGCCATATATTTCCAGCATA
** *
69055261 CACACTTAGTGCCATATATTTCCAGCATG
1 CACACCCAGTGCCATATATTTCCAGCATA
**
69055290 CACACTTAGTGCCA
1 CACACCCAGTGCCA
69055304 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
CACACCCAGTGCCATATATTTCCAGCATA
Found at i:69063089 original size:28 final size:28
Alignment explanation
Indices: 69063024--69063124 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69063014 ATAGTGAATC
*
69063024 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69063053 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69063081 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69063111 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69063125 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69063173 original size:29 final size:29
Alignment explanation
Indices: 69063141--69063213 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
69063131 CTTCGAGCTC
*
69063141 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69063170 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69063199 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
69063214 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69066668 original size:43 final size:43
Alignment explanation
Indices: 69066547--69066689 Score: 157
Period size: 43 Copynumber: 3.3 Consensus size: 43
69066537 TGACATATCT
* * *
69066547 CAGATATGGTCTTACATGTTATCACACAT-CGATGCC-ACTGTCC
1 CAGACATGGTCTTACACGTAATCACA-ATACGATGCCAAC-GTCC
* * * *
69066590 TAGATAGGGTCTTACACGTAATCA-ATTAACGATGCCAACGTCC
1 CAGACATGGTCTTACACGTAATCACAAT-ACGATGCCAACGTCC
* *
69066633 CAGACATGGTCTTACACGTAATCACAATACAATGCCAATGTCC
1 CAGACATGGTCTTACACGTAATCACAATACGATGCCAACGTCC
69066676 CAGACATGGTCTTA
1 CAGACATGGTCTTA
69066690 AATGTAAGCA
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 79 0.93
44 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
CAGACATGGTCTTACACGTAATCACAATACGATGCCAACGTCC
Found at i:69069949 original size:43 final size:42
Alignment explanation
Indices: 69069821--69069978 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
69069811 CAATGCTATA
* * * * *
69069821 TCCCAGATATGGTCTTACATGTTATCACACATCTATGTCACTG
1 TCCCAGACATGGTCTTACACGTAATCACA-ATATATGTCAATG
* * * *
69069864 TCCCAAACAGGGTCTTACACGTAATCA-ATTAATGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAAT-AT-ATGTCAATG
69069907 TCCCAGACATGGTCTTACACGTAATCACAATATAATGTCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAATAT-ATGTCAATG
* ** *
69069950 TCCTAGACATAATCTTACATGTAATCACA
1 TCCCAGACATGGTCTTACACGTAATCACA
69069979 TCTCGATAAC
Statistics
Matches: 94, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 89 0.95
44 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAATCACAATATATGTCAATG
Found at i:69072273 original size:39 final size:39
Alignment explanation
Indices: 69072155--69072337 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
69072145 TCGTTCAAAC
* * ** * **
69072155 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
69072195 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
69072235 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
69072274 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
69072313 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
69072338 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:69076367 original size:79 final size:80
Alignment explanation
Indices: 69076224--69076431 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
69076214 ACCTTCGGAG
* * ** * * * *
69076224 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
69076288 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
69076303 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
69076365 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
69076382 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
69076432 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:69076376 original size:40 final size:40
Alignment explanation
Indices: 69076324--69076431 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
69076314 TATCACGATT
** *
69076324 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
69076364 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
69076404 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
69076432 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:69088690 original size:39 final size:40
Alignment explanation
Indices: 69088636--69088791 Score: 217
Period size: 39 Copynumber: 4.0 Consensus size: 40
69088626 TGTGTATGAA
*
69088636 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
69088675 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* *
69088714 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* *** * *
69088754 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGCA
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCA
69088792 TTTGAACGAG
Statistics
Matches: 106, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 64 0.60
40 42 0.40
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (40 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:69088775 original size:79 final size:79
Alignment explanation
Indices: 69088636--69088791 Score: 215
Period size: 79 Copynumber: 2.0 Consensus size: 79
69088626 TGTGTATGAA
*** *
69088636 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
69088701 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * *
69088714 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTA
*
69088779 TGTCCCGAAGGCA
65 AGTCCCGAAGGCA
69088792 TTTGAACGAG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.37
79 32 0.48
80 10 0.15
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:69088817 original size:79 final size:78
Alignment explanation
Indices: 69088646--69088828 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 78
69088636 TGTGCGAATT
* *** *
69088646 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGC
** *
69088711 AATTGTGCGAGTT
66 AATTGAACGAGTA
* * *
69088724 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAG
1 GTGATATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAG-CCCGAAG
*
69088789 GCATTTGAACGAGTA
64 GCAATTGAACGAGTA
*
69088804 GCT-ATATCC-GGTTAAACTCCGAAGG
1 G-TGATATCCGGGTTAAGC-CCGAAGG
69088829 TATGTGATTT
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
78 17 0.19
79 45 0.51
80 25 0.28
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (78 bp):
GTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGGC
AATTGAACGAGTA
Found at i:69096588 original size:39 final size:39
Alignment explanation
Indices: 69096541--69096751 Score: 332
Period size: 39 Copynumber: 5.4 Consensus size: 39
69096531 ATGATATCCG
69096541 TAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGC
1 TAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGC
69096580 TAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGC
1 TAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGC
69096619 TAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGC
1 TAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGC
*
69096658 TAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGT
1 TAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGC
* * *** *
69096697 TAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGC
1 TAAG-CCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGC
*
69096737 TATGTCCCGAAGGCA
1 TAAG-CCCGAAGGCA
69096752 TTTGAACGAG
Statistics
Matches: 162, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 120 0.74
40 42 0.26
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGC
Found at i:69103492 original size:12 final size:12
Alignment explanation
Indices: 69103475--69103499 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69103465 AAGCAATGAA
69103475 AAATATTTTAAC
1 AAATATTTTAAC
69103487 AAATATTTTAAC
1 AAATATTTTAAC
69103499 A
1 A
69103500 TTATAATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
AAATATTTTAAC
Found at i:69104853 original size:69 final size:69
Alignment explanation
Indices: 69104742--69104880 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
69104732 GATAGGAAAA
*
69104742 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTTGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
69104807 GCTG
66 GCTG
69104811 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
1 ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
69104876 GCTG
66 GCTG
69104880 A
1 A
69104881 TAGAGTCTTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (69 bp):
ACAGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTGTAGTGGTGGTAGG
GCTG
Found at i:69111547 original size:29 final size:29
Alignment explanation
Indices: 69111514--69111570 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
69111504 TAAAAAAACC
*
69111514 TCATTTCCAACTTTATTTACTGAAATAGA
1 TCATTTCAAACTTTATTTACTGAAATAGA
* * *
69111543 TCATTTTAAATTTTATTTATTGAAATAG
1 TCATTTCAAACTTTATTTACTGAAATAG
69111571 GTAAAAAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (29 bp):
TCATTTCAAACTTTATTTACTGAAATAGA
Found at i:69111822 original size:12 final size:12
Alignment explanation
Indices: 69111798--69111860 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 12
69111788 AATTTCCTTT
69111798 AATTTCT-TCTA
1 AATTTCTCTCTA
69111809 AATTTCTCTCTA
1 AATTTCTCTCTA
*
69111821 AATTT-T-T-AA
1 AATTTCTCTCTA
***
69111830 AAAAGCTCTC-A
1 AATTTCTCTCTA
69111841 AATTTCTCTCTA
1 AATTTCTCTCTA
69111853 AATTTCTC
1 AATTTCTC
69111861 AAAGCTCTCT
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
9 3 0.08
10 2 0.05
11 17 0.43
12 18 0.45
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.46
Consensus pattern (12 bp):
AATTTCTCTCTA
Found at i:69111865 original size:30 final size:31
Alignment explanation
Indices: 69111808--69111869 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 31
69111798 AATTTCTTCT
*
69111808 AAATTTCTCTCTAAATTTTTAAAAAAGCTCTC
1 AAATTTCTCTCTAAATTTCT-AAAAAGCTCTC
*
69111840 AAATTTCTCTCTAAATTTCT-CAAAGCTCTC
1 AAATTTCTCTCTAAATTTCTAAAAAGCTCTC
69111870 TTTAAATCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 9 0.32
32 19 0.68
ACGTcount: A:0.34, C:0.23, G:0.03, T:0.40
Consensus pattern (31 bp):
AAATTTCTCTCTAAATTTCTAAAAAGCTCTC
Found at i:69111869 original size:21 final size:21
Alignment explanation
Indices: 69111836--69111876 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
69111826 TTAAAAAAGC
**
69111836 TCTCAAATTTCTCTCTAAATT
1 TCTCAAAGCTCTCTCTAAATT
*
69111857 TCTCAAAGCTCTCTTTAAAT
1 TCTCAAAGCTCTCTCTAAAT
69111877 CCTAATTTCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.44
Consensus pattern (21 bp):
TCTCAAAGCTCTCTCTAAATT
Found at i:69112050 original size:18 final size:18
Alignment explanation
Indices: 69112022--69112083 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 18
69112012 GTAAGGGTTA
69112022 ATTTCAATTTTTTAATATT
1 ATTT-AATTTTTTAATATT
*
69112041 ATTTAATTTTTTTCAT-TT
1 ATTTAA-TTTTTTAATATT
*
69112059 ATGTAATTTTAATTAATATTT
1 ATTTAATTTT--TTAATA-TT
69112080 ATTT
1 ATTT
69112084 TATAACTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 4 0.12
18 9 0.26
19 16 0.47
21 5 0.15
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (18 bp):
ATTTAATTTTTTAATATT
Found at i:69114107 original size:57 final size:58
Alignment explanation
Indices: 69114019--69114135 Score: 157
Period size: 57 Copynumber: 2.0 Consensus size: 58
69114009 TGTATTGATT
* * *
69114019 TTTTTAATATATTTGTATAAACTGCTTTTATATTATT-TTC-ATTTAATAAAATAGAAG
1 TTTTTAATATATTTGTACAAACTACTTTTATATT-TTGTCCTATTTAATAAAATAGAAG
* * *
69114076 TTTTTAATATATTTTTACAAATTATTTTTATATTTTGTCCTATTTAATAAAATAGAAG
1 TTTTTAATATATTTGTACAAACTACTTTTATATTTTGTCCTATTTAATAAAATAGAAG
69114134 TT
1 TT
69114136 CTTTTGAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
56 2 0.04
57 31 0.60
58 19 0.37
ACGTcount: A:0.36, C:0.05, G:0.06, T:0.53
Consensus pattern (58 bp):
TTTTTAATATATTTGTACAAACTACTTTTATATTTTGTCCTATTTAATAAAATAGAAG
Found at i:69117810 original size:22 final size:22
Alignment explanation
Indices: 69117770--69117814 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
69117760 ATCAAAAGTC
*
69117770 CTACCCATCCATCCACTACACT
1 CTACCCATCCAACCACTACACT
69117792 CTACTCCATCCAACC-CTACACT
1 CTAC-CCATCCAACCACTACACT
69117814 C
1 C
69117815 CATGTGGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.27, C:0.51, G:0.00, T:0.22
Consensus pattern (22 bp):
CTACCCATCCAACCACTACACT
Found at i:69125374 original size:28 final size:27
Alignment explanation
Indices: 69125320--69125380 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
69125310 ATAGGCAAAT
* *
69125320 ACAGTTTAGGCCTAAGCCCATTTCAGTA
1 ACAG-TTAGGCCTAAGCCCAATACAGTA
*
69125348 ACAGTTAGGGCCTTAGCCCAATACAGTA
1 ACAGTTA-GGCCTAAGCCCAATACAGTA
*
69125376 TCAGT
1 ACAGT
69125381 AGCAGTGTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 3 0.11
28 25 0.89
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (27 bp):
ACAGTTAGGCCTAAGCCCAATACAGTA
Found at i:69125477 original size:22 final size:22
Alignment explanation
Indices: 69125437--69125483 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
69125427 ATCAGAAGTC
*
69125437 CTACCCATCCATCCTCTACACT
1 CTACCCATCCAGCCTCTACACT
69125459 CTACTCCATCCAGCC-CTACACT
1 CTAC-CCATCCAGCCTCTACACT
69125481 CTA
1 CTA
69125484 TATGGGGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.23, C:0.49, G:0.02, T:0.26
Consensus pattern (22 bp):
CTACCCATCCAGCCTCTACACT
Found at i:69127975 original size:125 final size:125
Alignment explanation
Indices: 69127689--69127986 Score: 366
Period size: 125 Copynumber: 2.4 Consensus size: 125
69127679 CAAGCATGAT
* ** * * * *
69127689 GTATTGTAGAGAAAGAGCAACTAGGTGGGAGCTTTTTTCAGTACTTTTGCTGATAATGCATCTTG
1 GTATTGTAGAAAAAGAGCGTCTAGGTAGGAACTTTTTTCAGTACTTTTGCTGACAATGCATCCTG
*
69127754 TTTGAAGCATTTTTGACCCTATCTTTTCAGAACTATCTTCTCAAAATTATTTTTCAGAAA
66 TTTGAAGCATTTTTGACCCTATCTTTTCAGAACCATCTTCTCAAAATTATTTTTCAGAAA
* * * * * * * *
69127814 CTACTATAGAAAAAGAGTGT-TCAGG-AGGGAAGTTTTTTTAGTACTTTTGCTGGCAGTGCATCC
1 GTATTGTAGAAAAAGAGCGTCT-AGGTA-GGAACTTTTTTCAGTACTTTTGCTGACAATGCATCC
* * **
69127877 TGTTTGAAGCATTTTTGACCCTATCTTTTTAGAACCATCTTTTCAAAATTATTTTTGTGAAA
64 TGTTTGAAGCATTTTTGACCCTATCTTTTCAGAACCATCTTCTCAAAATTATTTTTCAGAAA
* *
69127939 GTATTGTAGAAAAAGAACGTCTAGGTAGGACCTTTTTTCAGTACTTTT
1 GTATTGTAGAAAAAGAGCGTCTAGGTAGGAACTTTTTTCAGTACTTTT
69127987 TGTAACACCC
Statistics
Matches: 141, Mismatches: 28, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
124 1 0.01
125 138 0.98
126 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.39
Consensus pattern (125 bp):
GTATTGTAGAAAAAGAGCGTCTAGGTAGGAACTTTTTTCAGTACTTTTGCTGACAATGCATCCTG
TTTGAAGCATTTTTGACCCTATCTTTTCAGAACCATCTTCTCAAAATTATTTTTCAGAAA
Found at i:69129419 original size:22 final size:22
Alignment explanation
Indices: 69129394--69129448 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 22
69129384 ATAAACTCTA
69129394 ACGAGCTGAACAGTAAGCTCAT
1 ACGAGCTGAACAGTAAGCTCAT
* * *
69129416 ACGAGTTGAGAATAGTAAGCTCTT
1 ACGAGCT--GAACAGTAAGCTCAT
*
69129440 ATGAGCTGA
1 ACGAGCTGA
69129449 TATATTGGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
22 8 0.31
24 18 0.69
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (22 bp):
ACGAGCTGAACAGTAAGCTCAT
Found at i:69131130 original size:125 final size:125
Alignment explanation
Indices: 69130857--69131973 Score: 1181
Period size: 125 Copynumber: 9.1 Consensus size: 125
69130847 TGGAAGTGTA
* * *
69130857 TTTTTACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAACTACAATAGAAAAA
1 TTTTTACCCTATTTTTC-AGAACCATCTTTTTAAAATTATTTTTTCAGAAACTACTATAGAAAAA
* * * * *
69130922 TAGCGTCCAACTAGGAGC-TTTTT-AGTACTTTTGCTGATAGTGAATCCTGTTTGAAGCGT
65 GAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGTTTGAAGCGT
* *
69130981 TTTTTACCCTATTTTGTCAGAACCATCTTCTCAAAATTA-TTTTTCAGAAACTACTATAGAAAAA
1 TTTTTACCCTATTTT-TCAGAACCATCTTTTTAAAATTATTTTTTCAGAAACTACTATAGAAAAA
* * * * *
69131045 GAGTGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATGCATCCTGTTTGAAGTGT
65 GAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGTTTGAAGCGT
* * * *
69131106 TTTTGACCTTATCTTTTCAGAACCATCTTCTTAAAATTA-TTTTTCAGAAACTATTATAGAAAAA
1 TTTTTACCCTAT-TTTTCAGAACCATCTTTTTAAAATTATTTTTTCAGAAACTACTATAGAAAAA
* ** * *
69131170 GAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTAACAGTGTGTCTTGCTTGAAGCGT
65 GAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGTTTGAAGCGT
* * * * * * *
69131231 TTTTTACCATATTTTTTAAAACCATCTTTTCAAAATTATTTGTTCAGAAACTACTGTAGAAAAAT
1 TTTTTACCCTATTTTTCAGAACCATCTTTTTAAAATTATTTTTTCAGAAACTACTATAGAAAAAG
* * * * *
69131296 AGTGTCTAAGTGGGAGTTTTTTTCAGTACTTTTGTTGACAGTGTAT-C---------C--
66 AGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGTTTGAAGCGT
* * *
69131344 ---TT-CCCTATTTTTCTATAACCATATTTTTAAAATTATTTTTTCAAAAACTAC-AGTAGAAAA
1 TTTTTACCCTATTTTTC-AGAACCATCTTTTTAAAATTATTTTTTCAGAAACTACTA-TAGAAAA
* * * * * *
69131404 ATAGCATCCAACTGGGAGCTTTTTT-AGTACTTTTGCTGATAGTGCATCATGGTTGAAGCGT
64 AGAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGTTTGAAGCGT
* * * *
69131465 TTTTTACCCTATTTTGTCGGAACCATCTTCTCAAAATTATTTTTTCA-ACAACTACAATAGAAAA
1 TTTTTACCCTATTTT-TCAGAACCATCTTTTTAAAATTATTTTTTCAGA-AACTACTATAGAAAA
** * * * * *
69131529 AGAATGTTCAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATACATCCTGTTTGAAGCGT
64 AGAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGTTTGAAGCGT
** * * *
69131591 TTTAGACCTTATCTTTTCAGAACCATCTTCTTAAAATTA-TTTTTCAGAAACTATTATAGAAAAA
1 TTTTTACCCTAT-TTTTCAGAACCATCTTTTTAAAATTATTTTTTCAGAAACTACTATAGAAAAA
* * * *
69131655 GAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTAACAGTGCATCTTGCTTAAAGCGT
65 GAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGTTTGAAGCGT
* * * * *
69131716 TTTTTACCATATTTTTTAGAACCATCTTTTCAAAATCATTTTTTCAGAAACTACTGTAGAAAAAG
1 TTTTTACCCTATTTTTCAGAACCATCTTTTTAAAATTATTTTTTCAGAAACTACTATAGAAAAAG
* * * * * * * *
69131781 AGTGTCTAAGTGGGAGTTTTTTTCAATACTTTTGTTGACAGTGTATCCT-TCGTGAAGTGT
66 AGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGT-TTGAAGCGT
* * * *
69131841 TTTTCACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAACTAC-AGTAGTAAA
1 TTTTTACCCTATTTTTC-AGAACCATCTTTTTAAAATTATTTTTTCAGAAACTACTA-TAGAAAA
* * *
69131905 AGAGCGTCCAACTGGGAGCTTTTTT-AGTACTTTTGCTGATAGTGCATCCTGTTTGAAGTGT
64 AGAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGTTTGAAGCGT
69131966 TTTTTACC
1 TTTTTACC
69131974 GTCAGAACTG
Statistics
Matches: 820, Mismatches: 139, Indels: 67
0.80 0.14 0.07
Matches are distributed among these distances:
109 28 0.03
110 61 0.07
115 1 0.00
119 1 0.00
123 36 0.04
124 85 0.10
125 477 0.58
126 128 0.16
127 3 0.00
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (125 bp):
TTTTTACCCTATTTTTCAGAACCATCTTTTTAAAATTATTTTTTCAGAAACTACTATAGAAAAAG
AGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGTTTGAAGCGT
Found at i:69131293 original size:250 final size:250
Alignment explanation
Indices: 69130844--69131973 Score: 1367
Period size: 250 Copynumber: 4.6 Consensus size: 250
69130834 TCAGTACTTT
* *
69130844 TGTTGGAAGTGTATTTTTACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAAC
1 TGTTTGAAGTGT-TTTTGACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAAC
* * * *
69130909 TACAATAGAAAAATAGCGTCCAACTAGGAGC-TTTTTAGTACTTTTGCTGATAGTGAATCCTGTT
65 TAC-ATAGAAAAAGAGCGTCCAACTGGGAGCTTTTTTAGTACTTTTGCTGATAGTGCATCCTGCT
*
69130973 TGAAGCGTTTTTTACCCTATTTTGTCAGAACCATCTTCTCAAAATTA-TTTTTCAGAAACTACTA
129 TGAAGCGTTTTTTACCATATTTTGTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTA
*
69131037 TAGAAAAAGAGTGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATGCATCC
194 TAGAAAAAGAGTGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATGCATCC
* * * *
69131094 TGTTTGAAGTGTTTTTGACCTTATCTTTTC-AGAACCATCTTCTTAAAATTA-TTTTTCAGAAAC
1 TGTTTGAAGTGTTTTTGACCCTAT-TTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAAC
* * * * ** *
69131157 TATTATAGAAAAAGAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTAACAGTGTGTCTTGC
65 TA-CATAGAAAAAGAGCGTCCAACTGGGAGCTTTTTT-AGTACTTTTGCTGATAGTGCATCCTGC
* * * *
69131222 TTGAAGCGTTTTTTACCATATTTT-TTAAAACCATCTTTTCAAAATTATTTGTTCAGAAACTACT
128 TTGAAGCGTTTTTTACCATATTTTGTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACT
* * * *
69131286 GTAGAAAAATAGTGTCTAAGTGGGAGTTTTTTTCAGTACTTTTGTTGAC-A-G-----
193 ATAGAAAAAGAGTGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATGCATCC
** *
69131337 TG--T--A---TCCTT--CCCTATTTTTCTATAACCATATTTTTAAAATTATTTTTTCAAAAACT
1 TGTTTGAAGTGTTTTTGACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAACT
* * * *
69131393 ACAGTAGAAAAATAGCATCCAACTGGGAGCTTTTTTAGTACTTTTGCTGATAGTGCATCATGGTT
66 ACA-TAGAAAAAGAGCGTCCAACTGGGAGCTTTTTTAGTACTTTTGCTGATAGTGCATCCTGCTT
* * *
69131458 GAAGCGTTTTTTACCCTATTTTGTCGGAACCATCTTCTCAAAATTATTTTTTCA-ACAACTACAA
130 GAAGCGTTTTTTACCATATTTTGTCAGAACCATCTTCTCAAAATTATTTTTTCAGA-AACTACTA
* * * *
69131522 TAGAAAAAGAATGTTCAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATACATCC
194 TAGAAAAAGAGTGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATGCATCC
* * * * * *
69131579 TGTTTGAAGCGTTTTAGACCTTATCTTTTC-AGAACCATCTTCTTAAAATTA-TTTTTCAGAAAC
1 TGTTTGAAGTGTTTTTGACCCTAT-TTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAAC
* * * * *
69131642 TATTATAGAAAAAGAGCGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTAACAGTGCATCTTGC
65 TA-CATAGAAAAAGAGCGTCCAACTGGGAGCTTTTTT-AGTACTTTTGCTGATAGTGCATCCTGC
* * * *
69131707 TTAAAGCGTTTTTTACCATATTTT-TTAGAACCATCTTTTCAAAATCATTTTTTCAGAAACTACT
128 TTGAAGCGTTTTTTACCATATTTTGTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACT
* * * * * *
69131771 GTAGAAAAAGAGTGTCTAAGTGGGAGTTTTTTTCAATACTTTTGTTGACAGTGTATCC
193 ATAGAAAAAGAGTGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATGCATCC
* *
69131829 T-TCGTGAAGTGTTTTTCACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAAC
1 TGT-TTGAAGTGTTTTTGACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAAC
* *
69131893 TACAGTAGTAAAAGAGCGTCCAACTGGGAGCTTTTTTAGTACTTTTGCTGATAGTGCATCCTGTT
65 TACA-TAGAAAAAGAGCGTCCAACTGGGAGCTTTTTTAGTACTTTTGCTGATAGTGCATCCTGCT
*
69131958 TGAAGTGTTTTTTACC
129 TGAAGCGTTTTTTACC
69131974 GTCAGAACTG
Statistics
Matches: 738, Mismatches: 108, Indels: 68
0.81 0.12 0.07
Matches are distributed among these distances:
233 5 0.01
234 69 0.09
235 116 0.16
236 4 0.01
239 1 0.00
241 1 0.00
242 2 0.00
243 2 0.00
244 1 0.00
246 1 0.00
248 38 0.05
249 63 0.09
250 317 0.43
251 113 0.15
252 5 0.01
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (250 bp):
TGTTTGAAGTGTTTTTGACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAACT
ACATAGAAAAAGAGCGTCCAACTGGGAGCTTTTTTAGTACTTTTGCTGATAGTGCATCCTGCTTG
AAGCGTTTTTTACCATATTTTGTCAGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTATA
GAAAAAGAGTGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATGCATCC
Found at i:69131563 original size:360 final size:359
Alignment explanation
Indices: 69130987--69131968 Score: 906
Period size: 360 Copynumber: 2.7 Consensus size: 359
69130977 GCGTTTTTTA
* * **
69130987 CCCTATTTTGTCAGAACCATCTTCTCAAAATTATTTTTCAGAAACTACTATAGAAAAAGAGTGTC
1 CCCTATTTTGTCAGAACCATATTCTCAAAATTATTTTTCAAAAACTACTATAGAAAAAGAGCATC
** * * * * *
69131052 CAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATGCATCCTGTTTGAAGTGTTTTTGACCTTA
66 CAACTGGGAGCTTTTTTCAGTACTTTTGCTGACAATGCATCATGGTTGAAGCGTTTTTGACCCTA
* ** *
69131117 TCTTTTCAGAACCATCTTCTTAAAATTATTTTTCAGAAACTATTATAGAAAAAGAGCGTCCAAGT
131 TCTTTTCAGAACCATCTTCTCAAAATTATTTTTCAGAAACTACAATAGAAAAAGAACGTCCAAGT
* *** * **
69131182 GGGAGCTTTTTTCAGTACTTTTGCTAACAGTGTGTCTTGCTTGAAGCGTTTTTTACCATAT-TTT
196 GGGAGCTTTTTTCAGTACTTTTGCTAACAATACATCCTGCTTGAAGCGTTTTAGACCATATCTTT
* * * * *
69131246 TTAAAACCATCTT-TTCAAAATTATTTGTTCAGAAACTACTGTAGAAAAATAGTGTCTAAGTGGG
261 TCAAAACCATCTTCTT-AAAATTATTT-TTCAGAAACTACTATAGAAAAAGAGCGTCCAAGTGGG
* * *
69131310 AGTTTTTTTCAGTACTTTTGTTGACAGTGTATCCTT
324 AGCTTTTTTCAGTACTTTTGCTAACAGTGTATCCTT
* * * *
69131346 CCCTATTTT-TCTATAACCATATTTTTAAAATTATTTTTTCAAAAACTAC-AGTAGAAAAATAGC
1 CCCTATTTTGTC-AGAACCATATTCTCAAAATTA-TTTTTCAAAAACTACTA-TAGAAAAAGAGC
* * *
69131409 ATCCAACTGGGAGCTTTTTT-AGTACTTTTGCTGATAGTGCATCATGGTTGAAGCGTTTTTTACC
63 ATCCAACTGGGAGCTTTTTTCAGTACTTTTGCTGACAATGCATCATGGTTGAAGCGTTTTTGACC
* *
69131473 CTAT-TTTGTCGGAACCATCTTCTCAAAATTATTTTTTCA-ACAACTACAATAGAAAAAGAATGT
128 CTATCTTT-TCAGAACCATCTTCTCAAAATTA-TTTTTCAGA-AACTACAATAGAAAAAGAACGT
* * * * * *
69131536 TCAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATACATCCTGTTTGAAGCGTTTTAGACCTT
190 CCAAGTGGGAGCTTTTTTCAGTACTTTTGCTAACAATACATCCTGCTTGAAGCGTTTTAGACCAT
* *
69131601 ATCTTTTCAGAACCATCTTCTTAAAATTATTTTTCAGAAACTATTATAGAAAAAGAGCGTCCAAG
255 ATCTTTTCAAAACCATCTTCTTAAAATTATTTTTCAGAAACTACTATAGAAAAAGAGCGTCCAAG
*
69131666 TGGGAGCTTTTTTCAGTACTTTTGCTAACAGTGCATCTTGCTT
320 TGGGAGCTTTTTTCAGTACTTTTGCTAACAGTGTATC---CTT
* * * * * *
69131709 AAAGCGTTTTTTACCATATTTT-TTAGAACCATCTTTTCAAAATCATTTTTTCAGAAACTACTGT
1 ----C--------CC-TATTTTGTCAGAACCATATTCTCAAAATTA-TTTTTCAAAAACTACTAT
** * * * * * * * * *
69131773 AGAAAAAGAGTGTCTAAGTGGGAGTTTTTTTCAATACTTTTGTTGACAGTGTATCCTTCG-TGAA
52 AGAAAAAGAGCATCCAACTGGGAGCTTTTTTCAGTACTTTTGCTGACAATGCAT-CATGGTTGAA
* * * * * * *
69131837 GTGTTTTTCACCCTAT-TTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAACTACAGTAG
116 GCGTTTTTGACCCTATCTTTTC-AGAACCATCTTCTCAAAATTA-TTTTTCAGAAACTACAATAG
* * * * * * * * *
69131901 TAAAAGAGCGTCCAACTGGGAGCTTTTTT-AGTACTTTTGCTGATAGTGCATCCTGTTTGAAGTG
179 AAAAAGAACGTCCAAGTGGGAGCTTTTTTCAGTACTTTTGCTAACAATACATCCTGCTTGAAGCG
69131965 TTTT
244 TTTT
69131969 TTACCGTCAG
Statistics
Matches: 509, Mismatches: 85, Indels: 42
0.80 0.13 0.07
Matches are distributed among these distances:
358 5 0.01
359 89 0.17
360 181 0.36
361 24 0.05
362 2 0.00
363 3 0.01
367 1 0.00
375 96 0.19
376 104 0.20
377 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (359 bp):
CCCTATTTTGTCAGAACCATATTCTCAAAATTATTTTTCAAAAACTACTATAGAAAAAGAGCATC
CAACTGGGAGCTTTTTTCAGTACTTTTGCTGACAATGCATCATGGTTGAAGCGTTTTTGACCCTA
TCTTTTCAGAACCATCTTCTCAAAATTATTTTTCAGAAACTACAATAGAAAAAGAACGTCCAAGT
GGGAGCTTTTTTCAGTACTTTTGCTAACAATACATCCTGCTTGAAGCGTTTTAGACCATATCTTT
TCAAAACCATCTTCTTAAAATTATTTTTCAGAAACTACTATAGAAAAAGAGCGTCCAAGTGGGAG
CTTTTTTCAGTACTTTTGCTAACAGTGTATCCTT
Found at i:69131642 original size:485 final size:485
Alignment explanation
Indices: 69130713--69131973 Score: 1992
Period size: 485 Copynumber: 2.6 Consensus size: 485
69130703 AGGTTATTAC
* * * * *
69130713 ACTTTTGCTGACAGTGCATCCTGCTTGAAGCATTTTTTACCATATTTTTTTAAAACCATATTCTC
1 ACTTTTGCTAACAGTGCATCTTGCTTGAAGCGTTTTTTACCATA-TTTTTTAAAACCATCTTTTC
* * *
69130778 AAAATTATTTTTTCAAAAACTACTGTAGAAAAAGAGTGTCTTCA-TGGGAGATTTTTTCAGTACT
65 AAAATTATTTTTTCAGAAACTACTGTAGAAAAAGAGTGTC-TAAGTGGGAGTTTTTTTCAGTACT
**
69130842 TTTGTTGGA-AGTGTATTTTTACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAA
129 TTTGTT-GACAGTGTATCCTTACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAA
* * *
69130906 AACTACAATAGAAAAATAGCGTCCAACTAGGAGC-TTTTTAGTACTTTTGCTGATAGTGAATCCT
193 AACTACAGTAGAAAAATAGCGTCCAACTGGGAGCTTTTTTAGTACTTTTGCTGATAGTGCATCCT
69130970 GTTTGAAGCGTTTTTTACCCTATTTTGTCAGAACCATCTTCTCAAAATTATTTTTCAGAAACTAC
258 GTTTGAAGCGTTTTTTACCCTATTTTGTCAGAACCATCTTCTCAAAATTATTTTTCAGAAACTAC
* * *
69131035 TATAGAAAAAGAGTGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATGCATCCTGTTTG
323 AATAGAAAAAGAATGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATACATCCTGTTTG
* *
69131100 AAGTGTTTTTGACCTTATCTTTTCAGAACCATCTTCTTAAAATTATTTTTCAGAAACTATTATAG
388 AAGCGTTTTAGACCTTATCTTTTCAGAACCATCTTCTTAAAATTATTTTTCAGAAACTATTATAG
69131165 AAAAAGAGCGTCCAAGTGGGAGCTTTTTTCAGT
453 AAAAAGAGCGTCCAAGTGGGAGCTTTTTTCAGT
**
69131198 ACTTTTGCTAACAGTGTGTCTTGCTTGAAGCGTTTTTTACCATATTTTTTAAAACCATCTTTTCA
1 ACTTTTGCTAACAGTGCATCTTGCTTGAAGCGTTTTTTACCATATTTTTTAAAACCATCTTTTCA
* *
69131263 AAATTATTTGTTCAGAAACTACTGTAGAAAAATAGTGTCTAAGTGGGAGTTTTTTTCAGTACTTT
66 AAATTATTTTTTCAGAAACTACTGTAGAAAAAGAGTGTCTAAGTGGGAGTTTTTTTCAGTACTTT
*
69131328 TGTTGACAGTGTATCCTT-CCCTATTTTTCTATAACCATATTTTTAAAATTATTTTTTCAAAAAC
131 TGTTGACAGTGTATCCTTACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAAC
* * *
69131392 TACAGTAGAAAAATAGCATCCAACTGGGAGCTTTTTTAGTACTTTTGCTGATAGTGCATCATGGT
196 TACAGTAGAAAAATAGCGTCCAACTGGGAGCTTTTTTAGTACTTTTGCTGATAGTGCATCCTGTT
*
69131457 TGAAGCGTTTTTTACCCTATTTTGTCGGAACCATCTTCTCAAAATTATTTTTTCA-ACAACTACA
261 TGAAGCGTTTTTTACCCTATTTTGTCAGAACCATCTTCTCAAAATTA-TTTTTCAGA-AACTACA
*
69131521 ATAGAAAAAGAATGTTCAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATACATCCTGTTTGA
324 ATAGAAAAAGAATGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATACATCCTGTTTGA
69131586 AGCGTTTTAGACCTTATCTTTTCAGAACCATCTTCTTAAAATTATTTTTCAGAAACTATTATAGA
389 AGCGTTTTAGACCTTATCTTTTCAGAACCATCTTCTTAAAATTATTTTTCAGAAACTATTATAGA
69131651 AAAAGAGCGTCCAAGTGGGAGCTTTTTTCAGT
454 AAAAGAGCGTCCAAGTGGGAGCTTTTTTCAGT
* *
69131683 ACTTTTGCTAACAGTGCATCTTGCTTAAAGCGTTTTTTACCATATTTTTTAGAACCATCTTTTCA
1 ACTTTTGCTAACAGTGCATCTTGCTTGAAGCGTTTTTTACCATATTTTTTAAAACCATCTTTTCA
* *
69131748 AAATCATTTTTTCAGAAACTACTGTAGAAAAAGAGTGTCTAAGTGGGAGTTTTTTTCAATACTTT
66 AAATTATTTTTTCAGAAACTACTGTAGAAAAAGAGTGTCTAAGTGGGAGTTTTTTTCAGTACTTT
69131813 TGTTGACAGTGTATCCTTCGTGAAGTGTTTTTCACCCTATTTTTCTATAACCATCTTTTTAAAAT
131 TGTTGACAGTGTAT-C--C-----------TT-ACCCTATTTTTCTATAACCATCTTTTTAAAAT
* *
69131878 TATTTTTTCAAAAACTACAGTAGTAAAAGAGCGTCCAACTGGGAGCTTTTTTAGTACTTTTGCTG
181 TATTTTTTCAAAAACTACAGTAGAAAAATAGCGTCCAACTGGGAGCTTTTTTAGTACTTTTGCTG
*
69131943 ATAGTGCATCCTGTTTGAAGTGTTTTTTACC
246 ATAGTGCATCCTGTTTGAAGCGTTTTTTACC
69131974 GTCAGAACTG
Statistics
Matches: 712, Mismatches: 43, Indels: 26
0.91 0.06 0.03
Matches are distributed among these distances:
483 77 0.11
484 166 0.23
485 345 0.48
486 1 0.00
488 1 0.00
499 2 0.00
501 120 0.17
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.41
Consensus pattern (485 bp):
ACTTTTGCTAACAGTGCATCTTGCTTGAAGCGTTTTTTACCATATTTTTTAAAACCATCTTTTCA
AAATTATTTTTTCAGAAACTACTGTAGAAAAAGAGTGTCTAAGTGGGAGTTTTTTTCAGTACTTT
TGTTGACAGTGTATCCTTACCCTATTTTTCTATAACCATCTTTTTAAAATTATTTTTTCAAAAAC
TACAGTAGAAAAATAGCGTCCAACTGGGAGCTTTTTTAGTACTTTTGCTGATAGTGCATCCTGTT
TGAAGCGTTTTTTACCCTATTTTGTCAGAACCATCTTCTCAAAATTATTTTTCAGAAACTACAAT
AGAAAAAGAATGTCCAGGTGGGAGCTTTTTTCAGTACTTTTGTTGACAATACATCCTGTTTGAAG
CGTTTTAGACCTTATCTTTTCAGAACCATCTTCTTAAAATTATTTTTCAGAAACTATTATAGAAA
AAGAGCGTCCAAGTGGGAGCTTTTTTCAGT
Found at i:69139387 original size:40 final size:40
Alignment explanation
Indices: 69139342--69139509 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
69139332 CGGAATACAA
69139342 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
69139382 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
69139422 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
69139462 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
69139502 CCGGATAT
1 CCGGATAT
69139510 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:69147401 original size:40 final size:40
Alignment explanation
Indices: 69147356--69147484 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
69147346 CGGAATACAA
69147356 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
69147396 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
69147436 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
69147476 CCGGATATA
1 CCGGATATA
69147485 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:69150649 original size:12 final size:12
Alignment explanation
Indices: 69150632--69150656 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69150622 TAGTGGCTAT
69150632 ATCCGGGCTAAG
1 ATCCGGGCTAAG
69150644 ATCCGGGCTAAG
1 ATCCGGGCTAAG
69150656 A
1 A
69150657 CCGAAGGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.32, T:0.16
Consensus pattern (12 bp):
ATCCGGGCTAAG
Found at i:69150726 original size:40 final size:39
Alignment explanation
Indices: 69150644--69150728 Score: 118
Period size: 40 Copynumber: 2.2 Consensus size: 39
69150634 CCGGGCTAAG
* *
69150644 ATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTTATTCT
1 ATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTGATTAT
*
69150683 ATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTAT
1 ATCCGGGCTAAGA-CCGAAGGCATTCGTGCGA-GTGATTAT
69150723 ATCCGG
1 ATCCGG
69150729 TTATATTCCG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
39 14 0.34
40 27 0.66
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGACCGAAGGCATTCGTGCGAGTGATTAT
Found at i:69158678 original size:40 final size:39
Alignment explanation
Indices: 69158556--69158682 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
69158546 AAATTGAATG
* * *
69158556 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTG--ATT
* **
69158595 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGATT
*
69158635 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGATT
69158675 ATATCCGG
1 ATATCCGG
69158683 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
39 14 0.19
40 58 0.78
41 1 0.01
42 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGATT
Found at i:69160840 original size:20 final size:20
Alignment explanation
Indices: 69160795--69160842 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
69160785 AGTAAGCTTG
69160795 GTTGAGCTCAAACAAGCTGA
1 GTTGAGCTCAAACAAGCTGA
** **
69160815 AATGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACAAGCTGA
69160835 GTTGAGCT
1 GTTGAGCT
69160843 GGACGGAGCT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (20 bp):
GTTGAGCTCAAACAAGCTGA
Found at i:69162480 original size:40 final size:40
Alignment explanation
Indices: 69162408--69162608 Score: 302
Period size: 40 Copynumber: 5.1 Consensus size: 40
69162398 CGGTATTTAA
*
69162408 CCGGATATAGCT-ACTCGC-C-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
69162446 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69162486 CCGGATATAGTAGCTCGCACAAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69162525 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69162565 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
69162605 CCGG
1 CCGG
69162609 TTATCATCCG
Statistics
Matches: 153, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
37 1 0.01
38 16 0.10
39 37 0.24
40 99 0.65
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69162539 original size:79 final size:79
Alignment explanation
Indices: 69162408--69162608 Score: 300
Period size: 79 Copynumber: 2.5 Consensus size: 79
69162398 CGGTATTTAA
* * *
69162408 CCGGATATAGCTACTCGC-C-AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
69162471 CCTTCGGGACTTAGC
65 CCTTCGGGACTTAGC
*
69162486 CCGGATATAGTAGCTCGCACAAATGCCTTC-GGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
69162550 CCTTCGGGACTTAGC
65 CCTTCGGGACTTAGC
* *
69162565 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
69162609 TTATCATCCG
Statistics
Matches: 112, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
77 2 0.02
78 15 0.13
79 72 0.64
80 23 0.21
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (79 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGC
CTTCGGGACTTAGC
Found at i:69170523 original size:40 final size:40
Alignment explanation
Indices: 69170477--69170680 Score: 302
Period size: 40 Copynumber: 5.1 Consensus size: 40
69170467 CGGTATTTAA
* *
69170477 CCGGATATAGCT-ACTCGCACCAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
69170517 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69170557 CCGGATATAGTAGCTCGCACAAATGCCCTCGAGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69170597 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69170637 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
69170677 CCGG
1 CCGG
69170681 TTATCATCCG
Statistics
Matches: 153, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69172673 original size:17 final size:17
Alignment explanation
Indices: 69172651--69172684 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
69172641 AGGTGGTCGG
69172651 CGCGTTACAAAGTTCGA
1 CGCGTTACAAAGTTCGA
69172668 CGCGTTACAAAGTTCGA
1 CGCGTTACAAAGTTCGA
69172685 ATGGCATCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (17 bp):
CGCGTTACAAAGTTCGA
Done.