Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 222 of 433
Found at i:69180156 original size:18 final size:18
Alignment explanation
Indices: 69180133--69180173 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
69180123 CATGACAGTG
* * *
69180133 TAAATTGTTAGGTATTTA
1 TAAATTATTAAGTATGTA
69180151 TAAATTATTAAGTATGTA
1 TAAATTATTAAGTATGTA
69180169 TAAAT
1 TAAAT
69180174 GAATTGAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.46
Consensus pattern (18 bp):
TAAATTATTAAGTATGTA
Found at i:69184790 original size:20 final size:21
Alignment explanation
Indices: 69184743--69184808 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 21
69184733 TTGTACGAGA
69184743 TTTGCAC-TTGGATGCCCTTG
1 TTTGCACTTTGGATGCCCTTG
* * *
69184763 TATACACTTTGG-TGTCCTTG
1 TTTGCACTTTGGATGCCCTTG
** *
69184783 TTTGCACTACGG-TGCCCCTG
1 TTTGCACTTTGGATGCCCTTG
69184803 TTTGCA
1 TTTGCA
69184809 TATTTGTGCC
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
20 32 0.89
21 4 0.11
ACGTcount: A:0.12, C:0.26, G:0.23, T:0.39
Consensus pattern (21 bp):
TTTGCACTTTGGATGCCCTTG
Found at i:69192427 original size:40 final size:40
Alignment explanation
Indices: 69192396--69192614 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
69192386 CGCTCGAATA
* *
69192396 CCTTCGGGACATAGCTCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
*
69192436 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
69192476 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
69192516 CCTTCGGGACTTAGCCCGGATA-TGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
* * *
69192556 CCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
69192596 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69192615 TTATCATCCA
Statistics
Matches: 167, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 2 0.01
40 164 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:69198387 original size:21 final size:22
Alignment explanation
Indices: 69198347--69198390 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
69198337 GGCCACACGG
*
69198347 GCGTGTGGGCCCACATGGGCGT
1 GCGTGTGAGCCCACATGGGCGT
69198369 GCGTGTGAGCCCA-ATGGGCGT
1 GCGTGTGAGCCCACATGGGCGT
69198390 G
1 G
69198391 TGAGCCCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.11, C:0.25, G:0.45, T:0.18
Consensus pattern (22 bp):
GCGTGTGAGCCCACATGGGCGT
Found at i:69204360 original size:28 final size:28
Alignment explanation
Indices: 69204295--69204395 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69204285 ATAGTGAATC
*
69204295 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69204324 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69204352 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69204382 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69204396 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69204444 original size:29 final size:29
Alignment explanation
Indices: 69204412--69204484 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
69204402 CTTCGAGCTC
*
69204412 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69204441 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69204470 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
69204485 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69212073 original size:28 final size:28
Alignment explanation
Indices: 69212008--69212108 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69211998 ATAGTGAATC
*
69212008 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69212037 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69212065 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69212095 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69212109 CATACCCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69212157 original size:29 final size:29
Alignment explanation
Indices: 69212125--69212197 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
69212115 CTTCGAGCTC
*
69212125 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69212154 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
69212183 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
69212198 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69214449 original size:40 final size:40
Alignment explanation
Indices: 69214375--69214560 Score: 185
Period size: 40 Copynumber: 4.7 Consensus size: 40
69214365 CCGCACCAAG
* * * * * * *
69214375 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
* * *
69214415 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
** *
69214455 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
* * * * *
69214495 GTCC-TCGGGACTTAGCCCGGATGTAGCCACTAGCACAATT
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
*
69214535 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
69214561 TTTCCAGCAT
Statistics
Matches: 119, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 2 0.02
40 115 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
Found at i:69214475 original size:80 final size:80
Alignment explanation
Indices: 69214375--69214596 Score: 214
Period size: 80 Copynumber: 2.8 Consensus size: 80
69214365 CCGCACCAAG
* * * * * * *
69214375 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAATG-CCTTCGGGTCTTAGCCCGGATTT
1 GCCTTCGGGTCTTAACCCGGATATAACGACTAGCACAAATGTCC-TCGGGACTTAGCCCGGATGT
*
69214439 AACAACTTGCACGAA-T
65 AACAACTAGCAC-AATT
* ** *
69214455 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAATGTCCTCGGGACTTAGCCCGGATGTA
1 GCCTTCGGGTCTTAACCCGGATATAACGACTAGCACAAATGTCCTCGGGACTTAGCCCGGATGTA
* *
69214520 GCCACTAGCACAATT
66 ACAACTAGCACAATT
*** * ** * *
69214535 GCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATTAACGTCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGTCTTAACCCGGATATAACGACTAGCACAAATGTCCTCGGGACTTAGCCCGGAT
69214597 ATCATTCAAT
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 116 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
GCCTTCGGGTCTTAACCCGGATATAACGACTAGCACAAATGTCCTCGGGACTTAGCCCGGATGTA
ACAACTAGCACAATT
Found at i:69221762 original size:40 final size:40
Alignment explanation
Indices: 69221688--69221873 Score: 185
Period size: 40 Copynumber: 4.7 Consensus size: 40
69221678 CCGCACCAAG
* * * * * * *
69221688 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
* * *
69221728 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
** *
69221768 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
* * * * *
69221808 GTCC-TCGGGACTTAGCCCGGATGTAGCCACTAGCACAATT
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
*
69221848 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
69221874 TTTCCAGCAT
Statistics
Matches: 119, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 2 0.02
40 115 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAAT
Found at i:69221808 original size:80 final size:80
Alignment explanation
Indices: 69221724--69221909 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 80
69221714 CGATTTGCAC
* * * *
69221724 AAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTTCGGGTCTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGGATGTAACAACTAGCAC-AATTGCCTTCGGGTCTTAACCCGG
*
69221788 ATATAATTACTAGCAT
65 ATATAATTACCAGCAT
* *
69221804 AAATGTCC-TCGGGACTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
1 AAATG-CCTTCGGGACTTAGCCCGGATGTAACAACTAGCACAATTGCCTTCGGGTCTTAACCCGG
*
69221868 ATATAATTTCCAGCAT
65 ATATAATTACCAGCAT
* * *
69221884 TAACGTCTTCGGGACTTAGCCCGGAT
1 AAATGCCTTCGGGACTTAGCCCGGAT
69221910 ATCATTCAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 3 0.03
80 87 0.95
81 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
AAATGCCTTCGGGACTTAGCCCGGATGTAACAACTAGCACAATTGCCTTCGGGTCTTAACCCGGA
TATAATTACCAGCAT
Found at i:69226061 original size:47 final size:47
Alignment explanation
Indices: 69226007--69226244 Score: 343
Period size: 47 Copynumber: 5.1 Consensus size: 47
69225997 TTAGGATTTT
** * * *
69226007 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
69226054 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
69226101 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
69226148 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
69226195 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
69226242 ATG
1 ATG
69226245 CGAAATGTGT
Statistics
Matches: 175, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 172 0.98
48 3 0.02
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:69226082 original size:25 final size:25
Alignment explanation
Indices: 69226054--69226179 Score: 101
Period size: 25 Copynumber: 5.3 Consensus size: 25
69226044 CGAATGGCAA
69226054 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
69226079 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
69226101 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* *
69226126 ATGTGAT-AAGGTCG-A-ATGGC-CA-
1 ATGTGATGAATGT-GAACAT-GCATAT
69226148 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
69226173 ATGTGAT
1 ATGTGAT
69226180 AAGGCAGAAT
Statistics
Matches: 77, Mismatches: 10, Indels: 28
0.67 0.09 0.24
Matches are distributed among these distances:
22 16 0.21
23 19 0.25
24 19 0.25
25 23 0.30
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:69226154 original size:22 final size:22
Alignment explanation
Indices: 69226079--69226201 Score: 67
Period size: 22 Copynumber: 5.3 Consensus size: 22
69226069 ACATGCATAT
*
69226079 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGTCGAATGGCCA
* *
69226101 ATGTGATGAATGT-GAACAT-GCATA
1 ATGTGAT-AAGGTCG-A-ATGGC-CA
69226125 TATGTGATAAGGTCGAATGGCCA
1 -ATGTGATAAGGTCGAATGGCCA
* *
69226148 ATGTGATGAATGT-GAACAT-GCATA
1 ATGTGAT-AAGGTCG-A-ATGGC-CA
69226172 TATGTGATAAGG-CAGAATGGCCA
1 -ATGTGATAAGGTC-GAATGGCCA
69226195 ATGTGAT
1 ATGTGAT
69226202 GAACGTGGAA
Statistics
Matches: 77, Mismatches: 9, Indels: 30
0.66 0.08 0.26
Matches are distributed among these distances:
22 23 0.30
23 19 0.25
24 19 0.25
25 16 0.21
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGTCGAATGGCCA
Found at i:69226277 original size:46 final size:46
Alignment explanation
Indices: 69226218--69226400 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
69226208 GGAAGTGTAT
* *
69226218 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* *
69226264 ATATGAGGAAAAGCCGAATGGCTAACGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
69226310 ATATGAGGTAAAGCTGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
69226356 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
69226401 TGTATATATA
Statistics
Matches: 123, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 123 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:69231711 original size:18 final size:18
Alignment explanation
Indices: 69231688--69231723 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
69231678 CAACCTAGCG
*
69231688 ACCAATGTCGAGTTAGTA
1 ACCAATATCGAGTTAGTA
69231706 ACCAATATCGAGTTAGTA
1 ACCAATATCGAGTTAGTA
69231724 TGCCTTCGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (18 bp):
ACCAATATCGAGTTAGTA
Found at i:69247221 original size:40 final size:40
Alignment explanation
Indices: 69247166--69247373 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
69247156 TGAATGATAC
* *
69247166 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
69247206 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
69247246 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
69247286 CTGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
69247326 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
69247366 CC-GGCTAA
1 CCGGGCTAA
69247374 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 136 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:69254449 original size:5 final size:6
Alignment explanation
Indices: 69254423--69254453 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
69254413 ATAAGGCCCC
69254423 TTTAAT TTTAAT TTTAAT TTT-AT TTTAAT TT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TT
69254454 GGGGACTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTAAT
Found at i:69254449 original size:11 final size:12
Alignment explanation
Indices: 69254423--69254453 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
69254413 ATAAGGCCCC
69254423 TTTAATTTTAAT
1 TTTAATTTTAAT
69254435 TTTAATTTT-AT
1 TTTAATTTTAAT
69254446 TTTAATTT
1 TTTAATTT
69254454 GGGGACTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTAATTTTAAT
Found at i:69256130 original size:93 final size:93
Alignment explanation
Indices: 69256018--69256188 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
69256008 GCCCATAAGT
* *
69256018 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69256083 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69256111 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69256176 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69256189 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69256185 original size:46 final size:46
Alignment explanation
Indices: 69256010--69256190 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
69256000 TGTAACCCGC
* * *
69256010 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
69256056 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
69256106 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
69256149 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
69256191 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:69258144 original size:30 final size:30
Alignment explanation
Indices: 69258100--69258188 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
69258090 CAAAGATAAC
69258100 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
69258129 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
69258159 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
69258189 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:69258148 original size:15 final size:15
Alignment explanation
Indices: 69258100--69258179 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
69258090 CAAAGATAAC
*
69258100 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
69258114 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
69258129 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
69258144 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
69258159 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
69258174 AAGAAA
1 AAGAAA
69258180 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:69258188 original size:15 final size:15
Alignment explanation
Indices: 69258111--69258188 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
69258101 AGAAAACCGA
69258111 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
69258126 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
69258140 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
69258155 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
69258171 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
69258186 ATA
1 ATA
69258189 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69261164 original size:46 final size:46
Alignment explanation
Indices: 69261097--69261271 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69261087 TGTAACCCGC
* *
69261097 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
69261143 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--C--GTTCGCAT
* * *
69261192 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
69261235 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69261272 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 16
0.82 0.07 0.12
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 93 0.83
47 2 0.02
48 2 0.02
49 3 0.03
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:69261216 original size:92 final size:92
Alignment explanation
Indices: 69261105--69261272 Score: 309
Period size: 92 Copynumber: 1.8 Consensus size: 92
69261095 GCCCATAAGT
* *
69261105 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69261170 CGAGTTCGGATCCTAGTTACATCTCAC
66 CGAGTTCGGATCCTAGTTACATCTCAC
*
69261197 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69261262 CGAGTTCGGAT
66 CGAGTTCGGAT
69261273 GCTCAACCAT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATCCTAGTTACATCTCAC
Found at i:69268885 original size:21 final size:21
Alignment explanation
Indices: 69268843--69268885 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
69268833 CATATATCTG
**
69268843 TATCTGGCAGCTTGTCTGCAT
1 TATCTGGCAGCTTGTCCACAT
**
69268864 TATCTGGTGGCTTGTCCACAT
1 TATCTGGCAGCTTGTCCACAT
69268885 T
1 T
69268886 TTTTTGTGTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.40
Consensus pattern (21 bp):
TATCTGGCAGCTTGTCCACAT
Found at i:69268987 original size:21 final size:22
Alignment explanation
Indices: 69268957--69268999 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
69268947 GTAGGAACGT
*
69268957 TTTCTGAAAA-CTTTGCATTGA
1 TTTCTAAAAAGCTTTGCATTGA
*
69268978 TTTCTAAAAAGGTTTGCATTGA
1 TTTCTAAAAAGCTTTGCATTGA
69269000 CATCATCATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (22 bp):
TTTCTAAAAAGCTTTGCATTGA
Found at i:69272064 original size:41 final size:39
Alignment explanation
Indices: 69271895--69272070 Score: 212
Period size: 40 Copynumber: 4.5 Consensus size: 39
69271885 AAGCCAAGTA
* * * *
69271895 CCTTCGGGATTTAACCAGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGATATAG-TAACTCGCACAAATG
* * *
69271933 CCTTCGGGACATAGCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATG
69271972 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
* * *
69272012 CCTTCGGGACTTAGCCCGAAACTAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGATA-TAGTAACTCGCAC-AAATG
69272053 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
69272071 GTTATCATCC
Statistics
Matches: 121, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
37 1 0.01
38 27 0.22
39 21 0.17
40 49 0.40
41 23 0.19
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATG
Found at i:69273357 original size:18 final size:20
Alignment explanation
Indices: 69273334--69273374 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
69273324 GTTTTCATCA
69273334 TATTCCC-TT-TCATTATTT
1 TATTCCCATTCTCATTATTT
*
69273352 TATTCCCATTCTCCTTATTT
1 TATTCCCATTCTCATTATTT
69273372 TAT
1 TAT
69273375 CATACCTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 2 0.10
20 11 0.55
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (20 bp):
TATTCCCATTCTCATTATTT
Found at i:69275238 original size:39 final size:40
Alignment explanation
Indices: 69275138--69275319 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
69275128 TCGAATGATG
* * *
69275138 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
69275178 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
69275218 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
69275256 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
69275297 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
69275320 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:69275283 original size:78 final size:80
Alignment explanation
Indices: 69275138--69275319 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
69275128 TCGAATGATG
* * * *
69275138 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
69275203 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
69275218 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
69275280 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
69275297 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
69275320 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:69283218 original size:39 final size:39
Alignment explanation
Indices: 69283126--69283336 Score: 266
Period size: 39 Copynumber: 5.4 Consensus size: 39
69283116 CAAGCAAGTA
* * * *
69283126 CCTTCGGGATTTAACTGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
* *
69283164 CCTTCGGGACATAGCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
69283203 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
* *
69283243 CCTTCGGGACTTAGCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
* * * *
69283282 CCTTCGGGACTTAGCCCGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCGGATA-TAGTAACTCGCACAAATG
69283321 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
69283337 CGGTTATCAT
Statistics
Matches: 153, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
37 1 0.01
38 27 0.18
39 87 0.57
40 38 0.25
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:69283258 original size:79 final size:78
Alignment explanation
Indices: 69283142--69283336 Score: 270
Period size: 79 Copynumber: 2.5 Consensus size: 78
69283132 GGATTTAACT
* * * *
69283142 GGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCGGATATAGTAACTCGCACAATTGCCT
1 GGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAATAACTCGCACAAATGCCT
69283206 TCGGGACTTAGCCC
65 TCGGGACTTAGCCC
*
69283220 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGGATGTAATAACTCGCACAAATGCCT
1 GGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAATAACTCGCACAAATGCCT
69283285 TCGGGACTTAGCCC
65 TCGGGACTTAGCCC
* *
69283299 -GA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCC
1 GGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCC
69283337 CGGTTATCAT
Statistics
Matches: 106, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
77 2 0.02
78 48 0.45
79 56 0.53
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (78 bp):
GGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAATAACTCGCACAAATGCCTT
CGGGACTTAGCCC
Found at i:69287417 original size:40 final size:40
Alignment explanation
Indices: 69287373--69287536 Score: 192
Period size: 40 Copynumber: 4.2 Consensus size: 40
69287363 ATAACTATTA
** *
69287373 CTGAATGCACATACGTGCCCATGTTTGTACTTCAATGCCC
1 CTGAATGCACATACGTGCCCATGTTTGTACTTCGGTACCC
69287413 CTGAATGCACATACGTGGCCC-TGTTTGTACTTCGGTACCC
1 CTGAATGCACATACGT-GCCCATGTTTGTACTTCGGTACCC
* * * *
69287453 CTGAGTGCACATATGTGCCCATTTTTGTACTTTGGTACCC
1 CTGAATGCACATACGTGCCCATGTTTGTACTTCGGTACCC
* * *
69287493 C-GAATGCACATACGTGCCC-TATTTATACCTT-GGTAACC
1 CTGAATGCACATACGTGCCCATGTTTGTA-CTTCGGTACCC
69287531 CTGAAT
1 CTGAAT
69287537 CAAATAGCAT
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
38 13 0.12
39 27 0.25
40 64 0.59
41 4 0.04
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (40 bp):
CTGAATGCACATACGTGCCCATGTTTGTACTTCGGTACCC
Found at i:69290128 original size:36 final size:36
Alignment explanation
Indices: 69290088--69290197 Score: 88
Period size: 36 Copynumber: 3.2 Consensus size: 36
69290078 ACCTGTTTTG
69290088 TTCCATTCATATGAAAATAGACTCATAATTCTTTAA
1 TTCCATTCATATGAAAATAGACTCATAATTCTTTAA
* * ** * * * *
69290124 TTCCA-T-ATTTTATTCAT-CA-TC-TAATTATAT-C
1 TTCCATTCATATGA-AAATAGACTCATAATTCTTTAA
69290155 TCTCCATTCATATGAAAATAGACTCATAATTCTTTAA
1 T-TCCATTCATATGAAAATAGACTCATAATTCTTTAA
69290192 TTCCAT
1 TTCCAT
69290198 ATTTATTCAT
Statistics
Matches: 50, Mismatches: 16, Indels: 16
0.61 0.20 0.20
Matches are distributed among these distances:
31 1 0.02
32 11 0.22
33 5 0.10
34 10 0.20
35 5 0.10
36 17 0.34
37 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.43
Consensus pattern (36 bp):
TTCCATTCATATGAAAATAGACTCATAATTCTTTAA
Found at i:69290198 original size:68 final size:67
Alignment explanation
Indices: 69290089--69290224 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 67
69290079 CCTGTTTTGT
69290089 TCCATTCATATGAAAATAGACTCATAATTCTTTAATTCCATATTTTATTCATCATCTAATTATAT
1 TCCATTCATATGAAAATAGACTCATAATTCTTTAATTCCATA-TTTATTCATCATCTAATTATAT
69290154 CTC
65 CTC
69290157 TCCATTCATATGAAAATAGACTCATAATTCTTTAATTCCATATTTATTCATCATCTAATTATATC
1 TCCATTCATATGAAAATAGACTCATAATTCTTTAATTCCATATTTATTCATCATCTAATTATATC
69290222 TC
66 TC
69290224 T
1 T
69290225 ACTATTTTTA
Statistics
Matches: 68, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
67 26 0.38
68 42 0.62
ACGTcount: A:0.34, C:0.19, G:0.03, T:0.44
Consensus pattern (67 bp):
TCCATTCATATGAAAATAGACTCATAATTCTTTAATTCCATATTTATTCATCATCTAATTATATC
TC
Found at i:69291037 original size:93 final size:93
Alignment explanation
Indices: 69290925--69291096 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
69290915 CGCCCATAAG
* * *
69290925 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
69290990 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
69291018 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
*
69291083 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
69291097 TCAAATATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:69291093 original size:46 final size:46
Alignment explanation
Indices: 69290926--69291098 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
69290916 GCCCATAAGC
* * *
69290926 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
* * * * ** *
69290972 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCATCCAT-AAAT
*
69291019 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
* *
69291065 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTC
69291099 AAATATCCCA
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
46 70 0.67
47 35 0.33
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
Found at i:69292752 original size:25 final size:25
Alignment explanation
Indices: 69292718--69292770 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
69292708 TTATGGATGT
69292718 ACTTATTTATATTATAGACAAGTGC
1 ACTTATTTATATTATAGACAAGTGC
69292743 ACTTATTTATATTATAGACAAGTGC
1 ACTTATTTATATTATAGACAAGTGC
69292768 ACT
1 ACT
69292771 AACTTGTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (25 bp):
ACTTATTTATATTATAGACAAGTGC
Found at i:69294545 original size:51 final size:50
Alignment explanation
Indices: 69294469--69294759 Score: 316
Period size: 50 Copynumber: 5.8 Consensus size: 50
69294459 TGAGAATACA
* *** *
69294469 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATAGTTTAGGTCGCG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG-TTAGGTCACG
* * * *
69294520 TGTGTAATACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACG
* * * * * *
69294570 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCA-ATAACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAGTT-AGGTCACG
* * * *
69294621 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACG
* * * *
69294671 TGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCGGATTGTT-GGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACG
* *
69294720 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAATAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
69294760 CTTCGGTTAT
Statistics
Matches: 199, Mismatches: 38, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
49 42 0.21
50 85 0.43
51 71 0.36
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACG
Found at i:69294704 original size:101 final size:101
Alignment explanation
Indices: 69294518--69294704 Score: 302
Period size: 101 Copynumber: 1.9 Consensus size: 101
69294508 GTTTAGGTCG
*
69294518 CGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAA
1 CGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAA
*
69294583 GTGCAGGCTACTATGCGTACCCGACAACTTCAATAA
66 GTGCAGGCTACTAAGCGTACCCGACAACTTCAATAA
* * * * *
69294619 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAA
*
69294684 GTGCAGGCTACTAAGTGTACC
66 GTGCAGGCTACTAAGCGTACC
69294705 GGATTGTTGG
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 78 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (101 bp):
CGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAA
GTGCAGGCTACTAAGCGTACCCGACAACTTCAATAA
Found at i:69296774 original size:17 final size:17
Alignment explanation
Indices: 69296752--69296784 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
69296742 AAGGAGAACA
69296752 AATGAATCTTAAAAACG
1 AATGAATCTTAAAAACG
69296769 AATGAATCTTAAAAAC
1 AATGAATCTTAAAAAC
69296785 TTAATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
AATGAATCTTAAAAACG
Found at i:69296801 original size:11 final size:11
Alignment explanation
Indices: 69296787--69296821 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
69296777 TTAAAAACTT
69296787 AATAAAATAAA
1 AATAAAATAAA
*
69296798 AATAAAA-CAA
1 AATAAAATAAA
69296808 AATAAAATAAA
1 AATAAAATAAA
69296819 AAT
1 AAT
69296822 CTAATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:69296820 original size:16 final size:16
Alignment explanation
Indices: 69296790--69296819 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
69296780 AAAACTTAAT
69296790 AAAATAAAAATAAAAC
1 AAAATAAAAATAAAAC
69296806 AAAAT-AAAATAAAA
1 AAAATAAAAATAAAA
69296820 ATCTAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAATAAAAATAAAAC
Found at i:69303976 original size:40 final size:40
Alignment explanation
Indices: 69303902--69304043 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
69303892 AACCCAAGTA
* *
69303902 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
69303941 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
69303981 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
69304021 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
69304044 CATTCGAATA
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 12 0.12
40 81 0.84
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:69306511 original size:17 final size:17
Alignment explanation
Indices: 69306489--69306521 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
69306479 AAGGAGAACA
69306489 AATGAATCTTAAAAACG
1 AATGAATCTTAAAAACG
69306506 AATGAATCTTAAAAAC
1 AATGAATCTTAAAAAC
69306522 TTAATAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
AATGAATCTTAAAAACG
Found at i:69315031 original size:43 final size:43
Alignment explanation
Indices: 69314916--69315066 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 43
69314906 TATCCCATAT
* * * **
69314916 ATGGTCTTACATGTTATCACAT-ATCGATGCCGATAACCCAG-C
1 ATGGTCTTACACGTAATCACATAAT-GATGCCAATGTCCCAGAC
* * *
69314958 TATGGTCTTACACGAAATTA-ATTAACGATGCCAATGTCCCAGAC
1 -ATGGTCTTACACGTAATCACA-TAATGATGCCAATGTCCCAGAC
* *
69315002 ATGGTCTTACACGTAATGACATAATGATGCTAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCCAGAC
*
69315045 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACGTAATCACAT
69315067 CTCGTTAATC
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
42 1 0.01
43 86 0.96
44 3 0.03
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCCAGAC
Found at i:69319219 original size:17 final size:18
Alignment explanation
Indices: 69319187--69319221 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69319177 ATCCTAGCCC
*
69319187 CATTTTTAATGTTCTTTG
1 CATTTTTAAAGTTCTTTG
69319205 CATTTTTAAAG-TCTTTG
1 CATTTTTAAAGTTCTTTG
69319222 AAGCATGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57
Consensus pattern (18 bp):
CATTTTTAAAGTTCTTTG
Found at i:69326626 original size:40 final size:40
Alignment explanation
Indices: 69326569--69326784 Score: 267
Period size: 40 Copynumber: 5.5 Consensus size: 40
69326559 GGATGATAAT
*
69326569 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* * *
69326609 TGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* * * *
69326649 CGGGCTAAGTCCCGAGGGAATTTGTGCGAGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* *
69326689 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* * *
69326729 CGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACATC
* *
69326768 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
69326785 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 126 0.81
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
Found at i:69330725 original size:38 final size:39
Alignment explanation
Indices: 69330605--69330755 Score: 137
Period size: 39 Copynumber: 3.8 Consensus size: 39
69330595 TTCGAATGGT
* * * * *
69330605 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACCAA
* * *
69330646 ATCCGG-GTCAATTCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACT-AAGTCCGAAGGCATTTGTGCGAGTTACCAA
*
69330685 AT-CGGACTAAGATCCGAAGGCA-TTGTGCGAGTTCCCAA
1 ATCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACCAA
**
69330723 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 ATCCGGACTAAGT-CCGAAGGCATTTGTGCGAG
69330756 CTATTATAAC
Statistics
Matches: 93, Mismatches: 11, Indels: 13
0.79 0.09 0.11
Matches are distributed among these distances:
38 22 0.24
39 37 0.40
40 25 0.27
41 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:69330769 original size:40 final size:40
Alignment explanation
Indices: 69330605--69330796 Score: 189
Period size: 40 Copynumber: 4.8 Consensus size: 40
69330595 TTCGAATGGT
* * *
69330605 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
69330646 ATCCGGG-TCAA-TTCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
69330685 AT-CGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTCCCAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
69330723 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
69330764 A-CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
69330797 CGCTATATCC
Statistics
Matches: 125, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
38 22 0.18
39 36 0.29
40 56 0.45
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:69337758 original size:40 final size:40
Alignment explanation
Indices: 69337703--69337879 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
69337693 CAGATGATAA
* *
69337703 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
69337743 CCGGGCTAAGTCCCGAGGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
69337783 CCAGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
69337823 CCGGGCTATGTCCCAAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
69337862 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
69337880 TACTTGGCTT
Statistics
Matches: 119, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
38 14 0.12
39 15 0.13
40 90 0.76
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:69342283 original size:43 final size:43
Alignment explanation
Indices: 69342211--69342373 Score: 194
Period size: 43 Copynumber: 3.9 Consensus size: 43
69342201 AGATATGTGA
* *
69342211 CATCCGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGCGAG
1 CATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGAG
* *
69342254 CATCTGAGCTCGTTTAGAGGTCCGGGTTCATTATGGATGCGAG
1 CATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGAG
* * *
69342297 CATCTGAGCTCATTGAGAGGTCTGAGTTCATAATGGATGC--G
1 CATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGAG
* *
69342338 -AT-TCATG-T-GTTGAGAAGTCCGAGTTCATTATGGATG
1 CATCTGA-GCTCGTTGAGAGGTCCGAGTTCATTATGGATG
69342374 TGTTACATGT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
38 24 0.23
39 3 0.03
40 3 0.03
41 1 0.01
43 74 0.70
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.31
Consensus pattern (43 bp):
CATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGAG
Found at i:69345738 original size:34 final size:34
Alignment explanation
Indices: 69345695--69345796 Score: 186
Period size: 34 Copynumber: 3.0 Consensus size: 34
69345685 AAAAGATTGA
*
69345695 GTATAGACCGAGATATTTAAGTTTTAAATTAGCT
1 GTATAGACCGAGATATTTGAGTTTTAAATTAGCT
69345729 GTATAGACCGAGATATTTGAGTTTTAAATTAGCT
1 GTATAGACCGAGATATTTGAGTTTTAAATTAGCT
*
69345763 GTATAGACCGAGACATTTGAGTTTTAAATTAGCT
1 GTATAGACCGAGATATTTGAGTTTTAAATTAGCT
69345797 ATGTTAAAGG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (34 bp):
GTATAGACCGAGATATTTGAGTTTTAAATTAGCT
Found at i:69357349 original size:27 final size:27
Alignment explanation
Indices: 69357310--69357371 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
69357300 AATTTTTTTC
* * *
69357310 TTTTTAAATAATTTTAATGATTTT-AAG
1 TTTTAAAAAAATTATAAT-ATTTTGAAG
* *
69357337 TTTTAAAAAAATTATAATTTTTTGAAT
1 TTTTAAAAAAATTATAATATTTTGAAG
69357364 TTTTAAAA
1 TTTTAAAA
69357372 TTTTAGAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (27 bp):
TTTTAAAAAAATTATAATATTTTGAAG
Found at i:69358585 original size:31 final size:29
Alignment explanation
Indices: 69358529--69358593 Score: 76
Period size: 31 Copynumber: 2.2 Consensus size: 29
69358519 AAATTTTATG
* *
69358529 TATAAAATTGCACAAAATTAAAGTTCATA
1 TATAAAATTACACAAAATCAAAGTTCATA
* *
69358558 TATAAAATTACACATAAAATCATAGTTCATG
1 TATAAAATTACAC--AAAATCAAAGTTCATA
69358589 TATAA
1 TATAA
69358594 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 12 0.40
31 18 0.60
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (29 bp):
TATAAAATTACACAAAATCAAAGTTCATA
Found at i:69362287 original size:15 final size:15
Alignment explanation
Indices: 69362267--69362301 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
69362257 CGTTTTTATT
*
69362267 TTTTTAGGGTTAGGG
1 TTTTTAGGGTTAGAG
69362282 TTTTTAGGGTTAGAG
1 TTTTTAGGGTTAGAG
69362297 TTTTT
1 TTTTT
69362302 TTTTAATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.00, G:0.31, T:0.54
Consensus pattern (15 bp):
TTTTTAGGGTTAGAG
Found at i:69364886 original size:18 final size:18
Alignment explanation
Indices: 69364865--69364909 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
69364855 GGCACGGATC
69364865 AGGAAGAAGATGC-GGCTG
1 AGGAAGAAGATGCAGG-TG
* *
69364883 AGGAAAAAGATGCATGTG
1 AGGAAGAAGATGCAGGTG
69364901 AGGAAGAAG
1 AGGAAGAAG
69364910 GGGCAACAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 22 0.96
19 1 0.04
ACGTcount: A:0.42, C:0.07, G:0.40, T:0.11
Consensus pattern (18 bp):
AGGAAGAAGATGCAGGTG
Found at i:69366717 original size:46 final size:44
Alignment explanation
Indices: 69366574--69366717 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 44
69366564 CCCGCCCCTA
69366574 AGTGAACTCGGACTCAACTCAACGAGCTT-GGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAG-TTCGGATGCC-A---ACCATCT
* * * *
69366621 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
69366667 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
69366713 AGTGA
1 AGTGA
69366718 CATGTCACTT
Statistics
Matches: 79, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 35 0.44
47 28 0.35
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:69374213 original size:46 final size:44
Alignment explanation
Indices: 69374070--69374213 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
69374060 CCCGCCCCTA
*
69374070 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
69374117 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
69374163 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
69374209 AGTGA
1 AGTGA
69374214 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 30 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:69374652 original size:30 final size:30
Alignment explanation
Indices: 69374618--69374677 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69374608 ATTTAATACG
69374618 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
69374648 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
69374678 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:69385672 original size:40 final size:40
Alignment explanation
Indices: 69385589--69385796 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
69385579 CGGGATTTAA
* * * * * *
69385589 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
69385629 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
69385669 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
69385709 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
69385749 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
69385789 CCGGATAT
1 CCGGATAT
69385797 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:69385709 original size:80 final size:80
Alignment explanation
Indices: 69385615--69385796 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
69385605 GCTCGATTGT
* * *** * * * **
69385615 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
69385680 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
69385695 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
69385760 TACTAGCATAATTGC
66 AACTAGCACAAATGC
69385775 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
69385797 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:69393719 original size:40 final size:40
Alignment explanation
Indices: 69393636--69393843 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
69393626 CGGGATTTAA
* * * * * *
69393636 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
69393676 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
69393716 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
69393756 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
69393796 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
69393836 CCGGATAT
1 CCGGATAT
69393844 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:69393756 original size:80 final size:80
Alignment explanation
Indices: 69393662--69393843 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
69393652 GCTCGATTGT
* * *** * * * **
69393662 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
69393727 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
69393742 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
69393807 TACTAGCATAATTGC
66 AACTAGCACAAATGC
69393822 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
69393844 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:69404276 original size:50 final size:50
Alignment explanation
Indices: 69404219--69404316 Score: 160
Period size: 50 Copynumber: 2.0 Consensus size: 50
69404209 CCAAGCGATC
*
69404219 TGAAACTTTAACCACAAATTCAGTGAATTCAACAAATAAATTTTTAACTT
1 TGAAACTTTAACCACAAATTCAGTAAATTCAACAAATAAATTTTTAACTT
* * *
69404269 TGAAACTTTAACTACAAATTCAGTAAATTCAATAGATAAATTTTTAAC
1 TGAAACTTTAACCACAAATTCAGTAAATTCAACAAATAAATTTTTAAC
69404317 AGACACTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.45, C:0.14, G:0.06, T:0.35
Consensus pattern (50 bp):
TGAAACTTTAACCACAAATTCAGTAAATTCAACAAATAAATTTTTAACTT
Found at i:69416768 original size:12 final size:13
Alignment explanation
Indices: 69416734--69416767 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
69416724 ATTTAAAATC
69416734 TTTAAAATTATTTT
1 TTTAAAA-TATTTT
69416748 TTTGAAAATATTTT
1 TTT-AAAATATTTT
69416762 TTTAAA
1 TTTAAA
69416768 TTTTCTAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 3 0.16
14 12 0.63
15 4 0.21
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (13 bp):
TTTAAAATATTTT
Found at i:69419894 original size:40 final size:39
Alignment explanation
Indices: 69419729--69419912 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
69419719 AAATTGATTG
* * *
69419729 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
69419769 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
69419809 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
69419849 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
69419888 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
69419913 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:69419937 original size:80 final size:81
Alignment explanation
Indices: 69419769--69419957 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
69419759 GCTGGAAATT
* * * *
69419769 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
69419834 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
69419850 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
69419913 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
69419929 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
69419958 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:69426982 original size:14 final size:14
Alignment explanation
Indices: 69426965--69426995 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
69426955 AAATATTTCA
69426965 AAAAAAATTATTTT
1 AAAAAAATTATTTT
*
69426979 AAAAAAGTTATTTT
1 AAAAAAATTATTTT
69426993 AAA
1 AAA
69426996 TGATACAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (14 bp):
AAAAAAATTATTTT
Found at i:69426982 original size:15 final size:15
Alignment explanation
Indices: 69426954--69426995 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
69426944 CACTTTCTTG
*
69426954 AAAA-TATTTCAAAA
1 AAAATTATTTTAAAA
69426968 AAAATTATTTT-AAA
1 AAAATTATTTTAAAA
*
69426982 AAAGTTATTTTAAA
1 AAAATTATTTTAAA
69426996 TGATACAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 17 0.71
15 7 0.29
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (15 bp):
AAAATTATTTTAAAA
Found at i:69427565 original size:84 final size:84
Alignment explanation
Indices: 69427474--69427644 Score: 315
Period size: 84 Copynumber: 2.0 Consensus size: 84
69427464 TATTGCCAAC
*
69427474 AAAATCAAAATGAAGATGCAAAACCAGTTCAAATTTGAATCATCTTCTTTGGCATCAGCTAAATT
1 AAAATCAAAATGAAGATGCAAAACCAGTTCAAATTTGAACCATCTTCTTTGGCATCAGCTAAATT
69427539 ACATTACATCTATATTAAT
66 ACATTACATCTATATTAAT
* *
69427558 AAAATCAAAATGAAGATGCAAAACCAGTTCAAATTTGAACCATCTTCTTTGGCATCAGTTGAATT
1 AAAATCAAAATGAAGATGCAAAACCAGTTCAAATTTGAACCATCTTCTTTGGCATCAGCTAAATT
69427623 ACATTACATCTATATTAAT
66 ACATTACATCTATATTAAT
69427642 AAA
1 AAA
69427645 GCCTGTAACA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (84 bp):
AAAATCAAAATGAAGATGCAAAACCAGTTCAAATTTGAACCATCTTCTTTGGCATCAGCTAAATT
ACATTACATCTATATTAAT
Found at i:69428590 original size:29 final size:29
Alignment explanation
Indices: 69428525--69428591 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
69428515 TTTTTAATAA
*
69428525 AAATGCAAATTAGGGGCTAAATTGTGAAAT
1 AAATG-AAATTAGGGGCTAAAATGTGAAAT
*** * *
69428555 GTGTGAATTTAGGGGTTAAAATGTGAAAT
1 AAATGAAATTAGGGGCTAAAATGTGAAAT
69428584 AAATGAAA
1 AAATGAAA
69428592 ATTTTGGGCT
Statistics
Matches: 27, Mismatches: 10, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
29 25 0.93
30 2 0.07
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.28
Consensus pattern (29 bp):
AAATGAAATTAGGGGCTAAAATGTGAAAT
Found at i:69429122 original size:48 final size:48
Alignment explanation
Indices: 69429055--69429187 Score: 148
Period size: 48 Copynumber: 2.8 Consensus size: 48
69429045 ATACATTGAT
* * * * *
69429055 TTGGCTCCAGGCCATGATATTGGCACTTCGGGTGTGAGCT-TCACTGAT
1 TTGGCTTCGGGCCATGATATTGGCACTTCGAGTGTGAGATAT-ACTGAG
* *
69429103 TTGGCTAT-GGGCCATGATATTAGCACTTCGAGTGTGAGATATATTGAG
1 TTGGCT-TCGGGCCATGATATTGGCACTTCGAGTGTGAGATATACTGAG
*
69429151 TTGGCTTCGGGCCATGATTTTGGCACTT--AGTGTGAGA
1 TTGGCTTCGGGCCATGATATTGGCACTTCGAGTGTGAGA
69429188 GACTCCTGAG
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
46 9 0.12
47 1 0.01
48 62 0.85
49 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33
Consensus pattern (48 bp):
TTGGCTTCGGGCCATGATATTGGCACTTCGAGTGTGAGATATACTGAG
Found at i:69433315 original size:29 final size:29
Alignment explanation
Indices: 69433266--69433360 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 29
69433256 AAGTCTACAT
* * *
69433266 ACATGCATATGGCTCACTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
69433295 TCTTTCATATGGCCCATTAGGCCTAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
69433324 ACATTCATATGGCCCATTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
69433352 AAATTCATA
1 ACATTCATA
69433361 GTCATGCAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 12 0.21
29 44 0.79
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:69435062 original size:17 final size:18
Alignment explanation
Indices: 69435040--69435073 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69435030 CACATTGAAG
69435040 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
69435057 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
69435074 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:69436360 original size:28 final size:28
Alignment explanation
Indices: 69436326--69436428 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
69436316 TGGTCCATTT
* *
69436326 AGGCCCAATCTCATTCATATGGCTCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
69436354 GGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
69436382 AGGCCCAATCACTTTCATATGGCCCGTT
1 AGGCCCAATCACATTCATATGGCCCATC
*
69436410 AGGCCCAATCACTTTCATA
1 AGGCCCAATCACATTCATA
69436429 GTCATGCAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:69438977 original size:17 final size:18
Alignment explanation
Indices: 69438935--69438983 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
69438925 AGTTGAAAAG
69438935 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
69438954 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
69438971 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
69438984 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:69439870 original size:40 final size:40
Alignment explanation
Indices: 69439804--69439954 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
69439794 AAATTGAATG
* * *
69439804 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
69439843 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
69439883 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
69439923 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
69439955 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69439968 original size:40 final size:40
Alignment explanation
Indices: 69439840--69439970 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
69439830 TATGCTGGAA
* * * *
69439840 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
69439880 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
69439920 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
69439960 ATTATATCCGG
1 ATTATATCCGG
69439971 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:69446988 original size:17 final size:18
Alignment explanation
Indices: 69446946--69446994 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
69446936 AGTTGAAAAG
69446946 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
69446965 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
69446982 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
69446995 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:69447876 original size:40 final size:40
Alignment explanation
Indices: 69447810--69447960 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
69447800 AAATTGAATG
* * *
69447810 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
69447849 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
69447889 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
69447929 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
69447961 ACTGATTATA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69455946 original size:27 final size:28
Alignment explanation
Indices: 69455900--69455956 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 28
69455890 ACATGAATGG
69455900 AATAATTAGTTCTACTTATTA-AATATA
1 AATAATTAGTTCTACTTATTATAATATA
*
69455927 AATAATTAGTTCTAGC-TATTATACTATA
1 AATAATTAGTTCTA-CTTATTATAATATA
69455955 AA
1 AA
69455957 AAAATTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 19 0.70
28 8 0.30
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (28 bp):
AATAATTAGTTCTACTTATTATAATATA
Found at i:69456478 original size:18 final size:18
Alignment explanation
Indices: 69456451--69456493 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
69456441 CGCATAAAAA
* *
69456451 GAAAGCAAATAAATAAAC
1 GAAAGAAAATAAACAAAC
*
69456469 GAAAGAAAATAAACAAAT
1 GAAAGAAAATAAACAAAC
69456487 GAAAGAA
1 GAAAGAA
69456494 GGGGGAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (18 bp):
GAAAGAAAATAAACAAAC
Found at i:69457472 original size:37 final size:37
Alignment explanation
Indices: 69457419--69457492 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
69457409 AAGAAGGAGA
*
69457419 AGAAAGAACCGAGAAGAGAGTATAAGCAACAACTGGG
1 AGAAAGAACCGAGAAGAGAATATAAGCAACAACTGGG
* * *
69457456 AGAAGGAACTGAGAAGAGAATATCAGCAACAACTGGG
1 AGAAAGAACCGAGAAGAGAATATAAGCAACAACTGGG
69457493 CTTATTACAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.47, C:0.14, G:0.30, T:0.09
Consensus pattern (37 bp):
AGAAAGAACCGAGAAGAGAATATAAGCAACAACTGGG
Found at i:69458916 original size:7 final size:7
Alignment explanation
Indices: 69458878--69458976 Score: 73
Period size: 7 Copynumber: 14.0 Consensus size: 7
69458868 TACATTAAAT
69458878 AATAATA
1 AATAATA
**
69458885 AATTCTA
1 AATAATA
69458892 AATATACTA
1 AATA-A-TA
69458901 AAT-ATA
1 AATAATA
69458907 AATAATA
1 AATAATA
69458914 AATAATA
1 AATAATA
*
69458921 ACTAA-A
1 AATAATA
69458927 TAATAATA
1 -AATAATA
*
69458935 TATAAT-
1 AATAATA
69458941 AATATATA
1 AATA-ATA
69458949 AATAGATA
1 AATA-ATA
69458957 ATATAAT-
1 A-ATAATA
69458964 AA-AATA
1 AATAATA
69458970 AATAATA
1 AATAATA
69458977 TAGAAATATA
Statistics
Matches: 73, Mismatches: 9, Indels: 20
0.72 0.09 0.20
Matches are distributed among these distances:
5 3 0.04
6 12 0.16
7 39 0.53
8 11 0.15
9 8 0.11
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:69458917 original size:39 final size:43
Alignment explanation
Indices: 69458873--69458976 Score: 126
Period size: 45 Copynumber: 2.5 Consensus size: 43
69458863 TAACTTACAT
** *
69458873 TAAATAATAA-TAAATTCTAA-ATATACTAA-ATATAAATA-A
1 TAAATAATAACTAAATAATAATATATAATAATATATAAATAGA
69458912 TAAATAATAACTAAATAATAATATATAATAATATATAAATAGA
1 TAAATAATAACTAAATAATAATATATAATAATATATAAATAGA
*
69458955 TAATATAATAAAATAAATAATA
1 TAA-ATAAT-AACTAAATAATA
69458977 TAGAAATATA
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
39 10 0.18
40 8 0.15
41 8 0.15
42 9 0.16
43 4 0.07
44 5 0.09
45 11 0.20
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (43 bp):
TAAATAATAACTAAATAATAATATATAATAATATATAAATAGA
Found at i:69458920 original size:3 final size:3
Alignment explanation
Indices: 69458907--69458976 Score: 54
Period size: 3 Copynumber: 21.3 Consensus size: 3
69458897 ACTAAATATA
69458907 AAT AAT AAAT AAT AACT AAAT AAT AAT ATAT AAT AAT ATAT AAAT AGAT
1 AAT AAT -AAT AAT AA-T -AAT AAT AAT A-AT AAT AAT A-AT -AAT A-AT
69458956 AAT -AT AAT AA- AAT AAAT AAT A
1 AAT AAT AAT AAT AAT -AAT AAT A
69458977 TAGAAATATA
Statistics
Matches: 57, Mismatches: 0, Indels: 20
0.74 0.00 0.26
Matches are distributed among these distances:
2 4 0.07
3 32 0.56
4 18 0.32
5 3 0.05
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:69458926 original size:18 final size:18
Alignment explanation
Indices: 69458904--69458965 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
69458894 TATACTAAAT
69458904 ATAAATAATAAATA-ATA
1 ATAAATAATAAATAGATA
*
69458921 ACTAAATAAT-AATATATA
1 A-TAAATAATAAATAGATA
69458939 AT-AATATATAAATAGATA
1 ATAAATA-ATAAATAGATA
69458957 ATATAATAA
1 ATA-AATAA
69458966 AATAAATAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
16 4 0.11
17 8 0.21
18 21 0.55
19 1 0.03
20 4 0.11
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
ATAAATAATAAATAGATA
Found at i:69458933 original size:21 final size:20
Alignment explanation
Indices: 69458907--69458976 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 20
69458897 ACTAAATATA
69458907 AATAATAAATAATAACTAAAT
1 AATAATAAATAATAA-TAAAT
69458928 AATAATATATAATAATATATAAAT
1 AAT-A-ATA-AATAATA-ATAAAT
69458952 AGATAATATAATAA-AATAAAT
1 A-ATAATA-AATAATAATAAAT
69458973 AATA
1 AATA
69458977 TAGAAATATA
Statistics
Matches: 44, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
20 3 0.07
21 10 0.23
22 2 0.05
23 12 0.27
24 14 0.32
25 3 0.07
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (20 bp):
AATAATAAATAATAATAAAT
Found at i:69458970 original size:28 final size:27
Alignment explanation
Indices: 69458892--69458966 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 27
69458882 ATAAATTCTA
69458892 AATATACTAAAT-ATAA-ATAATAAAT
1 AATATACTAAATAATAATATAATAAAT
69458917 AATA-ACTAAATAATAATAT-AT-AAT
1 AATATACTAAATAATAATATAATAAAT
69458941 AATATA-TAAATAGATAATATAATAAA
1 AATATACTAAATA-ATAATATAATAAA
69458967 ATAAATAATA
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
24 20 0.45
25 18 0.41
26 4 0.09
27 2 0.05
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (27 bp):
AATATACTAAATAATAATATAATAAAT
Found at i:69458974 original size:25 final size:26
Alignment explanation
Indices: 69458904--69458986 Score: 95
Period size: 25 Copynumber: 3.3 Consensus size: 26
69458894 TATACTAAAT
*
69458904 ATAA-ATAATAAATAATAACTAAATA-
1 ATAATATAAT-AATAATAAATAAATAG
*
69458929 ATAATAT-ATAATAATATATAAATAG
1 ATAATATAATAATAATAAATAAATAG
69458954 ATAATATAATAA-AATAAATAATATAG
1 ATAATATAATAATAATAAATAA-ATAG
69458980 A-AATATA
1 ATAATATA
69458987 GATTTATAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
24 13 0.25
25 27 0.53
26 11 0.22
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (26 bp):
ATAATATAATAATAATAAATAAATAG
Found at i:69459028 original size:14 final size:14
Alignment explanation
Indices: 69458890--69459032 Score: 58
Period size: 14 Copynumber: 10.5 Consensus size: 14
69458880 TAATAAATTC
*
69458890 TAAATATACTAAATA
1 TAAATATAAT-AATA
69458905 TAAATAATAAATAATA
1 TAAAT-AT-AATAATA
69458921 -ACTAA-ATAATAATA
1 TA--AATATAATAATA
*
69458935 TATA-ATAAT-ATA
1 TAAATATAATAATA
*
69458947 TAAATA-GATAATA
1 TAAATATAATAATA
*
69458960 T-AATAAAATAA-A
1 TAAATATAATAATA
69458972 T-AATATAGA-AATA
1 TAAATATA-ATAATA
* *
69458985 TAGAT-TTATAA-A
1 TAAATATAATAATA
* *
69458997 TCAAA-ACATATTATA
1 T-AAATATA-ATAATA
69459012 TAAATATAATAATA
1 TAAATATAATAATA
69459026 TAAATAT
1 TAAATAT
69459033 TATTAATTAC
Statistics
Matches: 97, Mismatches: 14, Indels: 35
0.66 0.10 0.24
Matches are distributed among these distances:
12 24 0.25
13 23 0.24
14 27 0.28
15 13 0.13
16 6 0.06
17 4 0.04
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.34
Consensus pattern (14 bp):
TAAATATAATAATA
Found at i:69463039 original size:6 final size:6
Alignment explanation
Indices: 69463028--69463063 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
69463018 TTTGCAACCC
* *
69463028 AAGGGG AAGGGG AAAGGG AAGGGG AGGGGG AAGGGG
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG
69463064 TGTAACAGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:69468165 original size:47 final size:47
Alignment explanation
Indices: 69468103--69468220 Score: 182
Period size: 47 Copynumber: 2.5 Consensus size: 47
69468093 TGGCACTAAT
* * *
69468103 ACAAGGATACAATGTAAGACCATGTTTGGAATATGACATTTGGTAAG
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAA
*
69468150 ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAA
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAA
* *
69468197 ATAAGGATATCATGTAAGACCATG
1 ACAAGGATACCATGTAAGACCATG
69468221 CCAAGGCATG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (47 bp):
ACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGGTAAA
Found at i:69468263 original size:54 final size:54
Alignment explanation
Indices: 69468199--69468382 Score: 201
Period size: 54 Copynumber: 3.4 Consensus size: 54
69468189 TTGGTAAAAT
* *
69468199 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGATCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * * * *
69468253 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTAATGAGTTACTATAAGGAA
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGG-C
* * * *
69468309 AAGG-TCTCATATAAGATCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* **
69468361 AAGGATACCACATAAGACCATG
1 AAGGATATCATGTAAGACCATG
69468383 TAAAGACATG
Statistics
Matches: 105, Mismatches: 22, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
52 4 0.04
53 19 0.18
54 39 0.37
55 39 0.37
56 4 0.04
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:69468376 original size:53 final size:54
Alignment explanation
Indices: 69468199--69468406 Score: 179
Period size: 54 Copynumber: 3.9 Consensus size: 54
69468189 TTGGTAAAAT
* * * *
69468199 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGATCTATAAGGC
1 AAGGATACCATATAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * * * * *
69468253 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTAATGAGTTACTATAAGGAA
1 AAGGATACCATATAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGG-C
* * * *
69468309 AAGG-T-CTCATATAAGATCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATAC-CATATAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* ** * *
69468361 AAGGATACCACATAAGACCATGTAAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATATAAGACCATGCCAAGACATGGCATTGATAAGTTC
69468407 AAAAAGGAAA
Statistics
Matches: 124, Mismatches: 25, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
52 4 0.03
53 38 0.31
54 40 0.32
55 38 0.31
56 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (54 bp):
AAGGATACCATATAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:69475626 original size:28 final size:28
Alignment explanation
Indices: 69475561--69475661 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69475551 ATAGTGAATC
*
69475561 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69475590 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69475618 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69475648 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69475662 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69483581 original size:28 final size:28
Alignment explanation
Indices: 69483516--69483616 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69483506 ATAGTGAATC
*
69483516 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69483545 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69483573 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69483603 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69483617 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69490017 original size:28 final size:28
Alignment explanation
Indices: 69489952--69490052 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69489942 ATAGTGAATC
*
69489952 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69489981 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69490009 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69490039 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69490053 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69492566 original size:54 final size:57
Alignment explanation
Indices: 69492503--69492644 Score: 184
Period size: 54 Copynumber: 2.5 Consensus size: 57
69492493 GTTGCTGACG
* * *
69492503 GGATTTAGCCTGGATTGGTAATCCTATTATAATC-CCTCT-AGCATATGTTAC-AAA
1 GGATTTAGCCTGGACTGGTAATCCTATTATAAGCTCCTCTAAGCATATATTACAAAA
* * *
69492557 GGATTTAGCCTGGACTGGTAATCCTAAT-TGAGCTCTTCTAAGCATATATTACAAAAA
1 GGATTTAGCCTGGACTGGTAATCCTATTATAAGCTCCTCTAAGCATATATTAC-AAAA
*
69492614 GGATTTAGCCTGGACTGGTAATCCTGTTATA
1 GGATTTAGCCTGGACTGGTAATCCTATTATA
69492645 TGTTATGAGA
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
53 3 0.04
54 30 0.41
55 11 0.15
57 29 0.39
58 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34
Consensus pattern (57 bp):
GGATTTAGCCTGGACTGGTAATCCTATTATAAGCTCCTCTAAGCATATATTACAAAA
Found at i:69493254 original size:22 final size:22
Alignment explanation
Indices: 69493229--69493272 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
69493219 AATTATTAAC
*
69493229 ATAATGAATTTTAATTAATTTT
1 ATAATCAATTTTAATTAATTTT
*
69493251 ATAATCAATTTTGATTAATTTT
1 ATAATCAATTTTAATTAATTTT
69493273 GATTATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (22 bp):
ATAATCAATTTTAATTAATTTT
Found at i:69516492 original size:13 final size:13
Alignment explanation
Indices: 69516470--69516504 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
69516460 CCAACCATAC
69516470 GCCCGTGTGACCA
1 GCCCGTGTGACCA
*
69516483 GCCTGTGTGACCA
1 GCCCGTGTGACCA
69516496 GCCCGTGTG
1 GCCCGTGTG
69516505 CGCTTTCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.11, C:0.34, G:0.34, T:0.20
Consensus pattern (13 bp):
GCCCGTGTGACCA
Found at i:69521594 original size:40 final size:40
Alignment explanation
Indices: 69521502--69521651 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
69521492 AATTGAATGA
* * * *
69521502 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAAT-T
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
69521541 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
69521582 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
69521621 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
69521652 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 54 0.59
41 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:69521665 original size:40 final size:40
Alignment explanation
Indices: 69521541--69521667 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
69521531 GCTGGAAATT
* * * * *
69521541 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
69521581 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
69521621 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
69521661 TATCCGG
1 TATCCGG
69521668 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:69529554 original size:40 final size:40
Alignment explanation
Indices: 69529462--69529611 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
69529452 AATTGAATGA
* * * *
69529462 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAAT-T
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
69529501 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
69529542 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
69529581 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
69529612 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 54 0.59
41 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:69529625 original size:40 final size:40
Alignment explanation
Indices: 69529501--69529627 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
69529491 GCTGGAAATT
* * * * *
69529501 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
69529541 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
69529581 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
69529621 TATCCGG
1 TATCCGG
69529628 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:69534262 original size:49 final size:47
Alignment explanation
Indices: 69534188--69534455 Score: 164
Period size: 49 Copynumber: 5.7 Consensus size: 47
69534178 GGGATAAGTT
*
69534188 GCCGATGCCATGTCCCAGACTTGGTCTTACACTGCCTATCATCATCGAG
1 GCCGAT-CCATGTCCCAGACAT-GTCTTACACTGCCTATCATCATCGAG
* * *
69534237 GCCGATTCCATGTCCCAGACATGGTCTTGCACTAGCTCT-TGTAT-ATACG-T
1 GCCGA-TCCATGTCCCAGACAT-GTCTTACACT-GC-CTAT-CATCAT-CGAG
** * * *
69534287 GATGATGCATGTCCCAGACATGTCTTACACTAG-C-A-CAAC-TCTTA-
1 GCCGATCCATGTCCCAGACATGTCTTACACT-GCCTATCATCATC-GAG
* * * *
69534331 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCTAC
1 GCCGATCCATGTCCCAGACATGTCTTACACTGCCTA-TCATCATCGAG
* * * * *
69534377 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGAT-CCATGTCCCAGACAT-GTCTTACACTGCCTATCATCATCGAG
*
69534425 GCCGAT-CATGTCCCAGGCATGTCTTACACTG
1 GCCGATCCATGTCCCAGACATGTCTTACACTG
69534456 GCACACAATC
Statistics
Matches: 179, Mismatches: 23, Indels: 38
0.75 0.10 0.16
Matches are distributed among these distances:
43 2 0.01
44 33 0.18
45 13 0.07
46 24 0.13
47 14 0.08
48 33 0.18
49 45 0.25
50 9 0.05
51 6 0.03
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATCCATGTCCCAGACATGTCTTACACTGCCTATCATCATCGAG
Found at i:69534345 original size:44 final size:46
Alignment explanation
Indices: 69534290--69534462 Score: 167
Period size: 44 Copynumber: 3.8 Consensus size: 46
69534280 TATACGTGAT
*
69534290 GATGCATGTCCCAGACATGTCTTACACTAGCACA-A-CTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTC-TACACC
* *
69534334 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTACACC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCTACACC
* * * * * **
69534380 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACACAT-CTCTACACC
* *
69534428 GAT-CATGTCCCAGGCATGTCTTACACTGGCACACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACA
69534463 ATCACCCAAA
Statistics
Matches: 112, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
44 32 0.29
45 19 0.17
46 22 0.20
47 14 0.12
48 23 0.21
49 2 0.02
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.25
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCTACACC
Found at i:69534435 original size:93 final size:95
Alignment explanation
Indices: 69534189--69534459 Score: 261
Period size: 93 Copynumber: 2.9 Consensus size: 95
69534179 GGATAAGTTG
* * * * *
69534189 CCGATGCCATGTCCCAGACTTGGTCTTACACTGCCTATCATCATCGAGGCCGATTCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGA-TCCATGTCCCA
* * * * *
69534254 GACATGGTCTTGCACTAG--CTCTTGTATATA
65 GACAT-GTCTTACACTGGCACTCATCTATACA
* * * * * * * *
69534284 CGTGATGATGCATGTCCCAGACAT-GTCTTACACTAG--CACA-ACTCTTAGCCGATGCATGTCC
1 C-CGATG--CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATCCATGTCC
*
69534345 CAGACATGTCTTACACTGGCACTCATCTCTACA
63 CAGACATGTCTTACACTGGCACTCATCTATACA
69534378 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGAT-CATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATCCATGTCCCAG
*
69534441 GCATGTCTTACACTGGCAC
66 ACATGTCTTACACTGGCAC
69534460 ACAATCACCC
Statistics
Matches: 140, Mismatches: 27, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
91 14 0.10
92 21 0.15
93 47 0.34
94 26 0.19
95 5 0.04
96 4 0.03
97 10 0.07
98 13 0.09
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (95 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATCCATGTCCCAG
ACATGTCTTACACTGGCACTCATCTATACA
Found at i:69536182 original size:68 final size:68
Alignment explanation
Indices: 69536013--69536197 Score: 223
Period size: 67 Copynumber: 2.8 Consensus size: 68
69536003 CCTAGTAGGA
* * * *
69536013 TTCATATGTTGCCATAACCCGACTATGGTCTTACAC-ATTATGATCCCATGTTTACTGTCCTGGT
1 TTCATATGTTGCCATAGCCCAACTATGGTCTTACACGATTATGATCCCATGTTTACTATCCTGGA
*
69536077 GGC
66 GAC
* ** * *
69536080 TTTATATGTTGCCATAGCCCAGTTATGGTCTTACACGA-TATGATCCTATGTTTACTATCTTGGC
1 TTCATATGTTGCCATAGCCCAACTATGGTCTTACACGATTATGATCCCATGTTTACTATCCTGG-
69536144 AGAC
65 AGAC
* * *
69536148 TTCATATGTTTCCATAGCCCAACTATGGTCTTACACG-TTTTGGTCCCATG
1 TTCATATGTTGCCATAGCCCAACTATGGTCTTACACGATTATGATCCCATG
69536198 CACCTATGGT
Statistics
Matches: 98, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
67 53 0.54
68 45 0.46
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (68 bp):
TTCATATGTTGCCATAGCCCAACTATGGTCTTACACGATTATGATCCCATGTTTACTATCCTGGA
GAC
Found at i:69541517 original size:42 final size:42
Alignment explanation
Indices: 69541471--69541557 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
69541461 TGCTCACTTG
* *
69541471 TGTAACTCACTGAGTTGCCCTACATGCA-T-GTGTGCCAAGCCA
1 TGTAACTCACTGAGTTG-AC-ACATACACTCGTGTGCCAAGCCA
*
69541513 TGTAACTCTCTGAGTTGACACATACACTCGTGTGCCAAGCCA
1 TGTAACTCACTGAGTTGACACATACACTCGTGTGCCAAGCCA
69541555 TGT
1 TGT
69541558 GCTAGGCCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
40 6 0.15
41 2 0.05
42 32 0.80
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (42 bp):
TGTAACTCACTGAGTTGACACATACACTCGTGTGCCAAGCCA
Found at i:69542228 original size:40 final size:40
Alignment explanation
Indices: 69542178--69542499 Score: 383
Period size: 40 Copynumber: 8.1 Consensus size: 40
69542168 TGATTCAAGT
* * * *
69542178 TACCAAAGTACAAAAAGGGGCATGTATGCGCATTCAGGGG
1 TACCGAAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
*
69542218 TACCGTAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
1 TACCGAAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
*
69542258 TACCGGAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
1 TACCGAAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
* * * * * * *
69542298 TACCTAAGTACAAACAGGGGAAAGTATATGCATTTAAGGG
1 TACCGAAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
* * * * * * *
69542338 TACTGAAGTAAAAACAAGGGTAGGTGTGTGCATTCAGGGG
1 TACCGAAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
* * * *
69542378 CACCGAAGTACAAATAGGGGCACGTATATGGATTCAAGGG
1 TACCGAAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
* * *
69542418 TACCGAAGTACAAACAAGGGCACTTATGTGCATTCAGGGG
1 TACCGAAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
**
69542458 TATTGAAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
1 TACCGAAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
69542498 TA
1 TA
69542500 ATTATCTATA
Statistics
Matches: 235, Mismatches: 47, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 235 1.00
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.21
Consensus pattern (40 bp):
TACCGAAGTACAAATAGGGGCACGTATGTGCATTCAGGGG
Found at i:69542296 original size:20 final size:20
Alignment explanation
Indices: 69542193--69542297 Score: 65
Period size: 20 Copynumber: 5.2 Consensus size: 20
69542183 AAGTACAAAA
* *
69542193 AGGGGCATGTATGCGCATTC
1 AGGGGCACGTATGTGCATTC
* * *
69542213 AGGGGTACCGTA-GTACAAAT-
1 AGGGGCA-CGTATGTGC-ATTC
69542233 AGGGGCACGTATGTGCATTC
1 AGGGGCACGTATGTGCATTC
* * * *
69542253 AGGGGTACCGGA-GTACAAAT-
1 AGGGGCA-CGTATGTGC-ATTC
69542273 AGGGGCACGTATGTGCATTC
1 AGGGGCACGTATGTGCATTC
69542293 AGGGG
1 AGGGG
69542298 TACCTAAGTA
Statistics
Matches: 61, Mismatches: 16, Indels: 16
0.66 0.17 0.17
Matches are distributed among these distances:
19 11 0.18
20 40 0.66
21 10 0.16
ACGTcount: A:0.26, C:0.17, G:0.36, T:0.21
Consensus pattern (20 bp):
AGGGGCACGTATGTGCATTC
Found at i:69545312 original size:40 final size:40
Alignment explanation
Indices: 69545231--69545408 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
69545221 CAACCAAGTA
** *
69545231 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
69545270 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69545310 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69545350 CCTTCGGGACTTAGCCCAGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69545390 CATTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69545409 TTATCATCCG
Statistics
Matches: 126, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.10
40 113 0.90
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69548525 original size:47 final size:47
Alignment explanation
Indices: 69548468--69548999 Score: 850
Period size: 47 Copynumber: 11.3 Consensus size: 47
69548458 GTATGAGATA
* * *
69548468 TATATATGTGATAAGGCCGAATGGTCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
69548515 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
69548562 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69548609 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69548656 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69548703 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
69548750 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69548797 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
69548844 CATATATGAGATAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
69548891 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69548938 TATATATGTGATAAGGCC-AAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAA-TGGCCGATGTGATGAATGTGAAAGTG
*
69548985 TATAAATGTGATAAG
1 TATATATGTGATAAG
69549000 TCCCGAAGGG
Statistics
Matches: 463, Mismatches: 21, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
46 2 0.00
47 461 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:69548830 original size:22 final size:22
Alignment explanation
Indices: 69548802--69548924 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
69548792 AAGTGTATAT
69548802 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * * *
69548824 ATGTGATGAATG-TGAAAGTGCATA
1 ATGTGAT-AAGGCCGAATG-GC-CA
* * *
69548848 TATGAGATAAGGCCTAATGGCCC
1 -ATGTGATAAGGCCGAATGGCCA
* * * *
69548871 ATGTGATGAATG-TGAAAGTGCATA
1 ATGTGAT-AAGGCCGAATG-GC-CA
69548895 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
69548918 ATGTGAT
1 ATGTGAT
69548925 GAATGTGAAA
Statistics
Matches: 69, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 27 0.39
23 11 0.16
24 11 0.16
25 20 0.29
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:69548899 original size:25 final size:25
Alignment explanation
Indices: 69548871--69548949 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
69548861 CTAATGGCCC
69548871 ATGTGATGAATGTGAAAGTGCATAT
1 ATGTGATGAATGTGAAAGTGCATAT
* * * *
69548896 ATGTGAT-AAGGCCGAATG-GC-CA-
1 ATGTGATGAATG-TGAAAGTGCATAT
*
69548918 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGCATAT
69548943 ATGTGAT
1 ATGTGAT
69548950 AAGGCCAAGT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGCATAT
Done.