Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 223 of 433
Found at i:69551834 original size:40 final size:40
Alignment explanation
Indices: 69551720--69551840 Score: 129
Period size: 39 Copynumber: 3.1 Consensus size: 40
69551710 CGTGTTTTGG
* * * **
69551720 TTGGATTAGCTCTTATAAGCTTCTATCTAGCATGTTTCGG
1 TTGGATTAGCTCTTATGAGCTTCTATCTGGCGTGTTTCAA
* * * *
69551760 TCGGATTAG-TTTTATGAGCTTTTATTTGGCGTGTTTCAA
1 TTGGATTAGCTCTTATGAGCTTCTATCTGGCGTGTTTCAA
* *
69551799 TTGGATTAGCTCTTATGAGCTTCTGTCTGGTGTG-TTCAA
1 TTGGATTAGCTCTTATGAGCTTCTATCTGGCGTGTTTCAA
69551838 TTG
1 TTG
69551841 ATTTGATGAT
Statistics
Matches: 65, Mismatches: 15, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
39 38 0.58
40 27 0.42
ACGTcount: A:0.17, C:0.14, G:0.23, T:0.45
Consensus pattern (40 bp):
TTGGATTAGCTCTTATGAGCTTCTATCTGGCGTGTTTCAA
Found at i:69552443 original size:16 final size:16
Alignment explanation
Indices: 69552424--69552480 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 16
69552414 TGAATTGATG
69552424 ATTATTTTGATGTATA
1 ATTATTTTGATGTATA
*
69552440 ATTATATATTTGAAT-TGATT
1 A-T-TAT-TTTG-ATGT-ATA
69552460 ATTATTTTGATGTATA
1 ATTATTTTGATGTATA
69552476 ATTAT
1 ATTAT
69552481 ATATACTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
16 10 0.30
17 6 0.18
18 6 0.18
19 6 0.18
20 5 0.15
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (16 bp):
ATTATTTTGATGTATA
Found at i:69552464 original size:36 final size:36
Alignment explanation
Indices: 69552413--69552484 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
69552403 AATTGATGAG
69552413 TTGAATTGATGATTATTTTGATGTATAATTATATAT
1 TTGAATTGATGATTATTTTGATGTATAATTATATAT
*
69552449 TTGAATTGATTATTATTTTGATGTATAATTATATAT
1 TTGAATTGATGATTATTTTGATGTATAATTATATAT
69552485 ACTTGTGGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54
Consensus pattern (36 bp):
TTGAATTGATGATTATTTTGATGTATAATTATATAT
Found at i:69555949 original size:40 final size:40
Alignment explanation
Indices: 69555892--69555975 Score: 141
Period size: 40 Copynumber: 2.1 Consensus size: 40
69555882 TGTTATACTC
* *
69555892 TCTGTCTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCT
1 TCTGTCTGGCGTATTTCGGTTGAATTAGCTCTTATGAGCT
*
69555932 TCTGTTTGGCGTATTTCGGTTGAATTAGCTCTTATGAGCT
1 TCTGTCTGGCGTATTTCGGTTGAATTAGCTCTTATGAGCT
69555972 TCTG
1 TCTG
69555976 CATGGTGTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.12, C:0.17, G:0.27, T:0.44
Consensus pattern (40 bp):
TCTGTCTGGCGTATTTCGGTTGAATTAGCTCTTATGAGCT
Found at i:69558054 original size:27 final size:26
Alignment explanation
Indices: 69558014--69558125 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
69558004 AGGAAGCGTC
*
69558014 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
69558041 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
69558068 CTGGTGGTTTTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
69558096 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
69558122 CTGG
1 CTGG
69558126 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.69
28 15 0.21
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:69558118 original size:54 final size:54
Alignment explanation
Indices: 69558014--69558125 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
69558004 AGGAAGCGTC
*
69558014 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
69558068 CTGGTGGTTTTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
69558122 CTGG
1 CTGG
69558126 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:69568222 original size:46 final size:46
Alignment explanation
Indices: 69568168--69568343 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
69568158 TGGTTGAGCA
69568168 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * * *
69568214 TTCAAACTCGTTGAGTTGAATCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
69568259 CATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
69568307 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69568344 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.59
47 25 0.25
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69568324 original size:93 final size:93
Alignment explanation
Indices: 69568165--69568335 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
69568155 GGATGGTTGA
* * **
69568165 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
69568230 TGAATCCGAGTTCGTGAAATGTAACTAG
66 TGAATCCGAGTTCGTGAAATGTAACTAG
* *
69568258 GCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
*
69568323 TGAGTCCGAGTTC
66 TGAATCCGAGTTC
69568336 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAATCCGAGTTCGTGAAATGTAACTAG
Found at i:69571585 original size:40 final size:39
Alignment explanation
Indices: 69571494--69571640 Score: 127
Period size: 40 Copynumber: 3.7 Consensus size: 39
69571484 ATAACCACGT
* *
69571494 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
69571534 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
69571574 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
69571614 GCATAATTGTCTTCGGGGCTTAGCCCG
1 GCACAA-TGCCTTCGGGTCTTAGCCCG
69571641 ATATCATTCA
Statistics
Matches: 88, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
38 1 0.01
39 4 0.05
40 82 0.93
41 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:69579480 original size:40 final size:38
Alignment explanation
Indices: 69579435--69579559 Score: 112
Period size: 40 Copynumber: 3.3 Consensus size: 38
69579425 CGGAATATAA
69579435 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTC-GGTCTTAGC
* *** *
69579475 CCGGATAGAATGTCTCGCACGAATGCCTTCGGTCTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGTCTTAGC
* * * *
69579514 CCGGATGTAGCCACT--AGCAATTGCCTTCGG-CTTAAC
1 CCGGATATAACCACTGCA-CAAATGCCTTCGGTCTTAGC
69579550 CCGGATATAA
1 CCGGATATAA
69579560 TTTCCAGCAT
Statistics
Matches: 67, Mismatches: 16, Indels: 8
0.74 0.18 0.09
Matches are distributed among these distances:
36 14 0.21
37 11 0.16
39 19 0.28
40 23 0.34
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (38 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGTCTTAGC
Found at i:69582357 original size:40 final size:40
Alignment explanation
Indices: 69582312--69582479 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
69582302 CGGAATATAA
69582312 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
69582352 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
69582392 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
69582432 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
69582472 CCGGATAT
1 CCGGATAT
69582480 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69582462 original size:80 final size:80
Alignment explanation
Indices: 69582328--69582477 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
69582318 ATAACCACGT
* *
69582328 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
69582393 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
69582408 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
69582471 CCCGGAT
64 CCCGGAT
69582478 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:69590120 original size:40 final size:40
Alignment explanation
Indices: 69590075--69590242 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
69590065 CGGAATATAA
69590075 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
69590115 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
69590155 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
69590195 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
69590235 CCGGATAT
1 CCGGATAT
69590243 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69590225 original size:80 final size:80
Alignment explanation
Indices: 69590091--69590240 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
69590081 ATAACCACGT
* *
69590091 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
69590156 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
69590171 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
69590234 CCCGGAT
64 CCCGGAT
69590241 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:69593670 original size:49 final size:49
Alignment explanation
Indices: 69593598--69593703 Score: 212
Period size: 49 Copynumber: 2.2 Consensus size: 49
69593588 ATCAACCAAT
69593598 GCATATTAAATTACACACTTTGATTTATTCCACCTTTTCATGGATATAA
1 GCATATTAAATTACACACTTTGATTTATTCCACCTTTTCATGGATATAA
69593647 GCATATTAAATTACACACTTTGATTTATTCCACCTTTTCATGGATATAA
1 GCATATTAAATTACACACTTTGATTTATTCCACCTTTTCATGGATATAA
69593696 GCATATTA
1 GCATATTA
69593704 CTAGTTGAGC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (49 bp):
GCATATTAAATTACACACTTTGATTTATTCCACCTTTTCATGGATATAA
Found at i:69595168 original size:24 final size:24
Alignment explanation
Indices: 69595106--69595171 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
69595096 GTTATCTATG
**
69595106 ATGCCTTTGTGGCGCATTTGATAA
1 ATGCCTTTGTGGCATATTTGATAA
*
69595130 ATGCCTTTGTGGCATATTTGGTAA
1 ATGCCTTTGTGGCATATTTGATAA
69595154 ATGCAC-TTGTGGCATATT
1 ATGC-CTTTGTGGCATATT
69595172 CTATGTTGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 37 0.97
25 1 0.03
ACGTcount: A:0.21, C:0.15, G:0.24, T:0.39
Consensus pattern (24 bp):
ATGCCTTTGTGGCATATTTGATAA
Found at i:69599120 original size:27 final size:27
Alignment explanation
Indices: 69599089--69599171 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
69599079 CCTAATGGCC
69599089 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
* *** ***
69599116 ATGTGAT-AAGGCCTAA-TGGCCG-A-
1 ATGTGATGAATGTGAAAGTGTATGTAT
69599139 -TGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
69599165 ATGTGAT
1 ATGTGAT
69599172 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATGTAT
Found at i:69599157 original size:49 final size:49
Alignment explanation
Indices: 69599022--69599331 Score: 527
Period size: 49 Copynumber: 6.4 Consensus size: 49
69599012 TACATATATG
* * * *
69599022 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCA--TATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
69599069 TGTGATAAGGCCTAATGGCC-ATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
69599117 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
69599166 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
69599215 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
69599264 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
69599313 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
69599332 TAATGTAAAA
Statistics
Matches: 255, Mismatches: 5, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
46 21 0.08
47 19 0.07
48 23 0.09
49 192 0.75
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:69599483 original size:37 final size:37
Alignment explanation
Indices: 69599433--69599517 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
69599423 GGAATATGTT
*
69599433 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
69599470 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
69599507 CCGGGTAAGAC
1 CCGGGTAAGAC
69599518 TTCGTAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:69601617 original size:29 final size:29
Alignment explanation
Indices: 69601575--69601737 Score: 301
Period size: 29 Copynumber: 5.7 Consensus size: 29
69601565 CGAATGATCA
69601575 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATT
*
69601604 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATT
*
69601633 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATT
69601662 GAGGCACTATGTGTGCGAGATCAGTAA-T
1 GAGGCACTATGTGTGCGAGATCAGTAATT
69601690 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATT
69601719 GAGGCACTATGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
69601738 TTTTTCAATA
Statistics
Matches: 131, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
28 27 0.21
29 104 0.79
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATT
Found at i:69605404 original size:49 final size:49
Alignment explanation
Indices: 69605285--69605595 Score: 545
Period size: 49 Copynumber: 6.4 Consensus size: 49
69605275 TACATATATG
* * *
69605285 TGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGCA--TATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
69605332 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
69605381 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
69605430 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
69605479 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
69605528 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
69605577 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
69605596 TAATGTAAAA
Statistics
Matches: 257, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 41 0.16
49 216 0.84
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:69605747 original size:37 final size:37
Alignment explanation
Indices: 69605697--69605818 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
69605687 GGAATATGTT
*
69605697 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
69605734 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
69605771 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
69605808 CCGGGTAAGAC
1 CCGGGTAAGAC
69605819 TTCGTAATAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:69609473 original size:29 final size:27
Alignment explanation
Indices: 69609439--69609541 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 27
69609429 TACTCAATCA
*
69609439 CGCACACTCAGTGCCATGTGATTCAAGCC
1 CGCACACTCAGTGCCAT-T-ATTCAAGCT
* *
69609468 CGCACACAT-AGTGCCATATAGTCCAAACT
1 CGCACAC-TCAGTGCCAT-TA-TTCAAGCT
* *
69609497 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTCAGTGCCAT-TATT-CAAGCT
69609526 CGCACACTCAGTGCCA
1 CGCACACTCAGTGCCA
69609542 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20
Consensus pattern (27 bp):
CGCACACTCAGTGCCATTATTCAAGCT
Found at i:69612497 original size:87 final size:87
Alignment explanation
Indices: 69612351--69612526 Score: 352
Period size: 87 Copynumber: 2.0 Consensus size: 87
69612341 TAGGATCCTA
69612351 TAAAGACTCTTCAAGTTTCCACATCAAGGGGAAGATCTCACTTAAAGAATAAAGTTTAAGGAAGA
1 TAAAGACTCTTCAAGTTTCCACATCAAGGGGAAGATCTCACTTAAAGAATAAAGTTTAAGGAAGA
69612416 TTCATTTCATGTTTAAAAACTT
66 TTCATTTCATGTTTAAAAACTT
69612438 TAAAGACTCTTCAAGTTTCCACATCAAGGGGAAGATCTCACTTAAAGAATAAAGTTTAAGGAAGA
1 TAAAGACTCTTCAAGTTTCCACATCAAGGGGAAGATCTCACTTAAAGAATAAAGTTTAAGGAAGA
69612503 TTCATTTCATGTTTAAAAACTT
66 TTCATTTCATGTTTAAAAACTT
69612525 TA
1 TA
69612527 TCTATTATCT
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 89 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (87 bp):
TAAAGACTCTTCAAGTTTCCACATCAAGGGGAAGATCTCACTTAAAGAATAAAGTTTAAGGAAGA
TTCATTTCATGTTTAAAAACTT
Found at i:69614253 original size:10 final size:10
Alignment explanation
Indices: 69614231--69614297 Score: 50
Period size: 10 Copynumber: 6.9 Consensus size: 10
69614221 TAAATATCAA
*
69614231 TAAAAGTTA-
1 TAAAATTTAT
69614240 TAAAATTTAT
1 TAAAATTTAT
* *
69614250 TAAATTTTAA
1 TAAAATTTAT
**
69614260 TAAAAAATA-
1 TAAAATTTAT
69614269 TAAAA-TTATT
1 TAAAATTTA-T
*
69614279 TAAATTTTAT
1 TAAAATTTAT
69614289 TAAAATTTA
1 TAAAATTTA
69614298 GAAAATATAT
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
8 2 0.04
9 13 0.29
10 27 0.60
11 3 0.07
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (10 bp):
TAAAATTTAT
Found at i:69614254 original size:9 final size:9
Alignment explanation
Indices: 69614230--69614367 Score: 64
Period size: 9 Copynumber: 14.8 Consensus size: 9
69614220 ATAAATATCA
*
69614230 ATAAAAGTT
1 ATAAAATTT
69614239 ATAAAATTT
1 ATAAAATTT
*
69614248 ATTAAATTTT
1 A-TAAAATTT
**
69614258 AATAAAAAAT
1 -ATAAAATTT
69614268 ATAAAATTAT
1 ATAAAATT-T
* *
69614278 TTAAATTTT
1 ATAAAATTT
69614287 ATTAAAATTT
1 A-TAAAATTT
* *
69614297 AGAAAATAT
1 ATAAAATTT
*
69614306 ATATAAATCGT
1 ATA-AAAT-TT
*
69614317 A-AAAATAT
1 ATAAAATTT
*
69614325 AAAAAATTGT
1 ATAAAATT-T
*
69614335 A-AAATTTT
1 ATAAAATTT
* *
69614343 ATAAAAATA
1 ATAAAATTT
*
69614352 ATAAAAATT
1 ATAAAATTT
69614361 ATAAAAT
1 ATAAAAT
69614368 GCTTCAAAAA
Statistics
Matches: 97, Mismatches: 23, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
8 4 0.04
9 56 0.58
10 34 0.35
11 3 0.03
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.38
Consensus pattern (9 bp):
ATAAAATTT
Found at i:69614261 original size:29 final size:29
Alignment explanation
Indices: 69614229--69614367 Score: 92
Period size: 29 Copynumber: 4.9 Consensus size: 29
69614219 AATAAATATC
*
69614229 AATAAAAGTTATAAAATTTATTAAATTTT
1 AATAAAAATTATAAAATTTATTAAATTTT
*
69614258 AATAAAAAATATAAAA-TTATTTAAATTTT
1 AATAAAAATTATAAAATTTA-TTAAATTTT
* * * * **
69614287 ATTAAAATTTAGAAAATATATATAAATCGT
1 AATAAAAATTATAAAATTTAT-TAAATTTT
* *
69614317 AA-AAATA-TAAAAAATTGTA--AAATTTT
1 AATAAAAATTATAAAATT-TATTAAATTTT
* * *
69614343 -ATAAAAATAATAAAAATTATAAAAT
1 AATAAAAATTATAAAATTTATTAAAT
69614368 GCTTCAAAAA
Statistics
Matches: 82, Mismatches: 20, Indels: 17
0.69 0.17 0.14
Matches are distributed among these distances:
25 1 0.01
26 11 0.13
27 6 0.07
28 14 0.17
29 41 0.50
30 9 0.11
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (29 bp):
AATAAAAATTATAAAATTTATTAAATTTT
Found at i:69614350 original size:19 final size:19
Alignment explanation
Indices: 69614290--69614366 Score: 70
Period size: 19 Copynumber: 4.2 Consensus size: 19
69614280 AAATTTTATT
69614290 AAAATT-TAGAAAATATATA
1 AAAATTGTA-AAAATATATA
* *
69614309 TAAATCGTAAAAATATA-A
1 AAAATTGTAAAAATATATA
* *
69614327 AAAATTGTAAAATTTTATA
1 AAAATTGTAAAAATATATA
**
69614346 AAAATAATAAAAAT-TATA
1 AAAATTGTAAAAATATATA
69614364 AAA
1 AAA
69614367 TGCTTCAAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
18 21 0.45
19 24 0.51
20 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (19 bp):
AAAATTGTAAAAATATATA
Found at i:69614582 original size:19 final size:19
Alignment explanation
Indices: 69614537--69614585 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
69614527 TTAGTACAAT
*
69614537 AATTTTTATAATTTTTTTAC
1 AATTTTTAT-ATTTCTTTAC
*
69614557 AAATTTTATATTTCTTTAC
1 AATTTTTATATTTCTTTAC
*
69614576 ATTTTTTATA
1 AATTTTTATA
69614586 ATTTTCTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (19 bp):
AATTTTTATATTTCTTTAC
Found at i:69614678 original size:9 final size:9
Alignment explanation
Indices: 69614646--69614686 Score: 50
Period size: 8 Copynumber: 4.7 Consensus size: 9
69614636 AAAATCAATA
69614646 ATTTTTATT
1 ATTTTTATT
*
69614655 ACTTTTATT
1 ATTTTTATT
69614664 AATTTTTATT
1 -ATTTTTATT
69614674 -TTTTTA-T
1 ATTTTTATT
69614681 ATTTTT
1 ATTTTT
69614687 TTCCGCATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
7 1 0.04
8 11 0.39
9 8 0.29
10 8 0.29
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (9 bp):
ATTTTTATT
Found at i:69629919 original size:19 final size:19
Alignment explanation
Indices: 69629882--69629919 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
69629872 CAAAATGAAT
*
69629882 TAAAAAATTATAAGAAAAA
1 TAAAAAATTATAAAAAAAA
69629901 TAAAAAATTA-AAAATAAAA
1 TAAAAAATTATAAAA-AAAA
69629920 ACTCGATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (19 bp):
TAAAAAATTATAAAAAAAA
Found at i:69632057 original size:17 final size:17
Alignment explanation
Indices: 69632035--69632070 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
69632025 ATAACATACA
69632035 AATAAATAATGAAAAGT
1 AATAAATAATGAAAAGT
69632052 AATAAATAATGAAAAGT
1 AATAAATAATGAAAAGT
69632069 AA
1 AA
69632071 GATTTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (17 bp):
AATAAATAATGAAAAGT
Found at i:69632997 original size:22 final size:21
Alignment explanation
Indices: 69632956--69632999 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
69632946 ATATTTATTT
*
69632956 TATTTATTAATGTAGGTATAA
1 TATTTATTAATGTAGATATAA
69632977 TATTATATTAATAGTA-ATATAA
1 TATT-TATTAAT-GTAGATATAA
69632999 T
1 T
69633000 GTGTAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 4 0.20
22 13 0.65
23 3 0.15
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (21 bp):
TATTTATTAATGTAGATATAA
Found at i:69638029 original size:14 final size:14
Alignment explanation
Indices: 69638010--69638036 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
69638000 TAGGAACGTT
69638010 ATAAGAAAATTTTG
1 ATAAGAAAATTTTG
69638024 ATAAGAAAATTTT
1 ATAAGAAAATTTT
69638037 ATCGATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (14 bp):
ATAAGAAAATTTTG
Found at i:69640526 original size:46 final size:47
Alignment explanation
Indices: 69640380--69640549 Score: 215
Period size: 47 Copynumber: 3.7 Consensus size: 47
69640370 GGTAAGGTGC
* * *
69640380 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGT
*
69640427 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCG-AGT
* *
69640475 TGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATTTCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GT
*
69640521 CGATG-CATGTCCTAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
69640550 AGCTCTCGTG
Statistics
Matches: 110, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
45 1 0.01
46 48 0.44
47 54 0.49
48 7 0.06
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGT
Found at i:69641953 original size:53 final size:54
Alignment explanation
Indices: 69641773--69642026 Score: 249
Period size: 53 Copynumber: 4.8 Consensus size: 54
69641763 ATTAAGGTTT
* *
69641773 AAGGATACCTTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAA-GC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGC
* * * *
69641827 AAGGATATCATATAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* *
69641882 AAAGG-T-CTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATAC-CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * *
69641935 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * * *
69641984 AAGGATACCACGTACGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
69642027 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 22, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
49 38 0.22
52 11 0.06
53 45 0.26
54 39 0.23
55 33 0.19
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:69641978 original size:108 final size:109
Alignment explanation
Indices: 69641783--69641981 Score: 305
Period size: 108 Copynumber: 1.8 Consensus size: 109
69641773 AAGGATACCT
*
69641783 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGCAAGGATATCATATAAGACCAT
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGCAAGGATACCATATAAGACCAT
*
69641848 GTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTCTCA
66 GTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTCTCA
* *
69641892 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAA-GCAAGGATACCATATAAGACC
* *
69641954 ATGTCGAGACATGGCAATGGTAAGTTTC
64 ATGTCAAGACATGGCAATGATAAGTTTC
69641982 AAAAGGATAC
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
106 3 0.04
107 4 0.05
108 51 0.62
109 24 0.29
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (109 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGCAAGGATACCATATAAGACCAT
GTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTCTCA
Found at i:69642240 original size:16 final size:16
Alignment explanation
Indices: 69642219--69642249 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69642209 ATAAATTTGA
69642219 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
69642235 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
69642250 CGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:69649054 original size:95 final size:94
Alignment explanation
Indices: 69648905--69649204 Score: 437
Period size: 95 Copynumber: 3.2 Consensus size: 94
69648895 GTATGAGATA
*
69648905 TATATCTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCC--ATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
69648970 CCTAATGGCCGATGTGATGAATGTGAAAGTGTG
64 CCTAATGGCCGATGTGATGAATGTG-AAG-GTG
69649003 TATATATGTGATAAGGCC-TGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
69649067 TAATGGCCGATGTGATGAATGTGAAGGTG
66 TAATGGCCGATGTGATGAATGTGAAGGTG
*
69649096 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGATAGGG
1 TATATATGTGATAAGGCC--ATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
* * * * *
69649159 CCGAGTGGCCAACGTGATGGATGTGGAA-GTG
64 CCTAATGGCCGATGTGATGAATGT-GAAGGTG
*
69649190 TATAAATGTGATAAG
1 TATATATGTGATAAG
69649205 TCCCGAAGGG
Statistics
Matches: 190, Mismatches: 8, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
93 21 0.11
94 57 0.30
95 72 0.38
96 23 0.12
98 17 0.09
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (94 bp):
TATATATGTGATAAGGCCATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAGGTG
Found at i:69649115 original size:39 final size:41
Alignment explanation
Indices: 69648924--69649154 Score: 194
Period size: 49 Copynumber: 5.0 Consensus size: 41
69648914 GATAAGGCCT
69648924 AATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 AATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGAT---G
69648970 CCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGAT-
1 ---AATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGATG
69649015 AAGGCCTGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 AA----TGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGAT---G
*
69649065 CCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCG
1 ---AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT------G
69649115 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
69649155 AGGGCCGAGT
Statistics
Matches: 163, Mismatches: 5, Indels: 30
0.82 0.03 0.15
Matches are distributed among these distances:
42 2 0.01
46 40 0.25
47 54 0.33
49 64 0.39
50 1 0.01
53 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (41 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATG
Found at i:69649119 original size:47 final size:49
Alignment explanation
Indices: 69648905--69649204 Score: 447
Period size: 47 Copynumber: 6.3 Consensus size: 49
69648895 GTATGAGATA
*
69648905 TATATCTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
69648954 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
69649003 TATATATGTGATAAGGCC---TGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
69649049 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
69649096 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
69649143 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
69649190 TATAAATGTGATAAG
1 TATATATGTGATAAG
69649205 TCCCGAAGGG
Statistics
Matches: 237, Mismatches: 10, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
46 46 0.19
47 100 0.42
48 5 0.02
49 86 0.36
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:69651393 original size:40 final size:40
Alignment explanation
Indices: 69651327--69651596 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
69651317 GAGAATTGAG
* * * *
69651327 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69651367 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69651407 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
69651447 AGTGATATATCC-GACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69651486 AGTGATGTATCC-GACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
69651525 AGTAATGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
69651565 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
69651597 ATCATGCTGG
Statistics
Matches: 214, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 74 0.35
40 140 0.65
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:69651495 original size:79 final size:80
Alignment explanation
Indices: 69651327--69651596 Score: 418
Period size: 79 Copynumber: 3.4 Consensus size: 80
69651317 GAGAATTGAG
* * *
69651327 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
69651392 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* *
69651407 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCC-GACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
69651471 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * * *
69651486 AGTGATGTATCC-GACTAAGTTCCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
69651550 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* *
69651565 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
69651597 ATCATGCTGG
Statistics
Matches: 175, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
78 35 0.20
79 77 0.44
80 63 0.36
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCT
Found at i:69655764 original size:47 final size:47
Alignment explanation
Indices: 69655649--69655847 Score: 362
Period size: 47 Copynumber: 4.2 Consensus size: 47
69655639 GTATGAGATA
69655649 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
69655698 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
69655745 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
69655792 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
69655839 TATATATGT
1 TATATATGT
69655848 NCATCACATA
Statistics
Matches: 147, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 103 0.70
49 44 0.30
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:69658106 original size:27 final size:27
Alignment explanation
Indices: 69658074--69658156 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
69658064 CCTAATGCCG
69658074 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
69658101 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
69658124 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
69658150 ATGTGAT
1 ATGTGAT
69658157 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:69658107 original size:97 final size:96
Alignment explanation
Indices: 69657999--69658300 Score: 461
Period size: 97 Copynumber: 3.2 Consensus size: 96
69657989 GTATGAGATA
69657999 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
69658064 CCTAAT-GCCGATGTGATGAATGTGAAAGTGTG
66 CCTAATGGCCGATGTGATGAATGTG-AAG-GTG
69658096 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
69658161 CCTAATGGCCGATGTGATGAATGTGAAGGTG
66 CCTAATGGCCGATGTGATGAATGTGAAGGTG
* *
69658192 TATATA-GTGATAAGGCCGAATGGCCGAATGTGATGAATGTGAAA--GTGTATATATGTGATAGG
1 TATATATGTGATAAGGCCTAATGGCCG-ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAG
* * * * *
69658254 GCCGAGTGGCCAACGTGATGGATGTGGAA-GTG
65 GCCTAATGGCCGATGTGATGAATGT-GAAGGTG
*
69658286 TATAAATGTGATAAG
1 TATATATGTGATAAG
69658301 TCCCAAGGGC
Statistics
Matches: 193, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
94 45 0.23
95 30 0.16
96 26 0.13
97 74 0.38
98 18 0.09
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAGGTG
Found at i:69658223 original size:47 final size:49
Alignment explanation
Indices: 69657999--69658300 Score: 458
Period size: 49 Copynumber: 6.3 Consensus size: 49
69657989 GTATGAGATA
69657999 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
69658048 TATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
69658096 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
69658145 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
69658192 TATATA-GTGATAAGGCCGAATGGCCGAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCG-ATGTGATGAATGTGAAAGTGTG
* * * * * * *
69658239 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
69658286 TATAAATGTGATAAG
1 TATATATGTGATAAG
69658301 TCCCAAGGGC
Statistics
Matches: 240, Mismatches: 9, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
46 19 0.08
47 62 0.26
48 70 0.29
49 89 0.37
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:69660555 original size:39 final size:40
Alignment explanation
Indices: 69660408--69660676 Score: 391
Period size: 40 Copynumber: 6.8 Consensus size: 40
69660398 GAGAATTGAG
* * * * *
69660408 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69660448 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
69660488 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
69660528 AGTGATATATCC-GACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
69660567 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
69660607 AGT-ATGCAACCGGACTAAGTCCCGAAGA-CATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
69660645 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
69660677 ATCATGCTGG
Statistics
Matches: 209, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 13 0.06
39 79 0.38
40 117 0.56
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:69660576 original size:79 final size:80
Alignment explanation
Indices: 69660408--69660676 Score: 391
Period size: 79 Copynumber: 3.4 Consensus size: 80
69660398 GAGAATTGAG
* * * *
69660408 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
69660473 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* *
69660488 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCC-GACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
*
69660552 AAGAGCATTCATGCT
66 AAGAGCATTCGTGCT
* * * * *
69660567 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCTAGT-ATGCAACCGGACTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
69660631 AAGA-CATTCGTGCT
66 AAGAGCATTCGTGCT
* *
69660645 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
69660677 ATCATGCTGG
Statistics
Matches: 171, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
78 42 0.25
79 83 0.49
80 46 0.27
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCT
Found at i:69664936 original size:47 final size:47
Alignment explanation
Indices: 69664728--69664979 Score: 364
Period size: 49 Copynumber: 5.3 Consensus size: 47
69664718 ATGTGAGATA
69664728 TATATAT-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
69664776 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
69664825 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
69664871 TATATATGTGATAAGGCCGAATGGCCGGTGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
69664918 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
69664965 TATAAATGTGATAAG
1 TATATATGTGATAAG
69664980 TCCCGAAGGG
Statistics
Matches: 191, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
46 42 0.22
47 58 0.30
48 9 0.05
49 82 0.43
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:69664986 original size:95 final size:95
Alignment explanation
Indices: 69664728--69664979 Score: 366
Period size: 95 Copynumber: 2.7 Consensus size: 95
69664718 ATGTGAGATA
*
69664728 TATATAT-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAA--GTGTATATATGTGATAAGG
*
69664792 CCTAATGGCCGATGTGATGAATGTGAAAGTGTG
64 CCGAATGGCCGATGTGATGAATGTGAAAG-GTG
69664825 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT-GAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATGTGATAAGGCC
*
69664889 GAATGGCCGGTGTGATGAATGTGAAA-GTG
66 GAATGGCCGATGTGATGAATGTGAAAGGTG
* * * * * * *
69664918 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATGTGATAAG
69664980 TCCCGAAGGG
Statistics
Matches: 143, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
93 37 0.26
94 20 0.14
95 45 0.31
97 9 0.06
98 32 0.22
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (95 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATGTGATAAGGCC
GAATGGCCGATGTGATGAATGTGAAAGGTG
Found at i:69668060 original size:9 final size:9
Alignment explanation
Indices: 69668046--69668081 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
69668036 TCTCTTTACT
69668046 TTAGTTTAA
1 TTAGTTTAA
69668055 TTAG-TTAA
1 TTAGTTTAA
69668063 TTAGTTTAA
1 TTAGTTTAA
69668072 TTAGTTTAA
1 TTAGTTTAA
69668081 T
1 T
69668082 AAACAACCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (9 bp):
TTAGTTTAA
Found at i:69672011 original size:6 final size:6
Alignment explanation
Indices: 69672002--69672055 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
69671992 TTATATTGTT
* * * * * *
69672002 ATTTTA ATTTTA ATTTTA ATTTTT CTTTTT ATTTTC ATTTTC ATTTCA
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA
69672050 ATTTTA
1 ATTTTA
69672056 TTATTTTCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (6 bp):
ATTTTA
Found at i:69672030 original size:18 final size:18
Alignment explanation
Indices: 69672009--69672065 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
69671999 GTTATTTTAA
69672009 TTTTAATTTTAATTTTTC
1 TTTTAATTTTAATTTTTC
* *
69672027 TTTTTATTTTCA-TTTTC
1 TTTTAATTTTAATTTTTC
* *
69672044 ATTTCAATTTTATTATTTTC
1 -TTTTAATTTTAAT-TTTTC
69672064 TT
1 TT
69672066 CTGAAAGACA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
17 5 0.17
18 18 0.60
19 2 0.07
20 5 0.17
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTAATTTTAATTTTTC
Found at i:69674993 original size:9 final size:9
Alignment explanation
Indices: 69674979--69675014 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
69674969 TCTCTTTACT
69674979 TTAGTTTAA
1 TTAGTTTAA
69674988 TTAG-TTAA
1 TTAGTTTAA
69674996 TTAGTTTAA
1 TTAGTTTAA
69675005 TTAGTTTAA
1 TTAGTTTAA
69675014 T
1 T
69675015 AAACAACCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (9 bp):
TTAGTTTAA
Found at i:69678399 original size:55 final size:53
Alignment explanation
Indices: 69678312--69678566 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
69678302 ATTAGGGTTT
* * *
69678312 AAGGATACCTTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAAGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-GTTTCTAAAGC
* * *
69678367 AAGGATATCATATAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTA-AA-GC
* * * *
69678422 AAAGG-TCCCATGTAAGACCATG-CTAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGGTAAGTTTC-TAAAGC
* * * *
69678475 AAGGACACCATGTAAGACCATGTCGAGACATGGCAATGGTAAG-TT-TGAA--
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAAGC
* * * * *
69678524 AAGGATACCACGTACGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
69678567 GTACCCGTGT
Statistics
Matches: 166, Mismatches: 27, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
49 37 0.22
51 2 0.01
52 4 0.02
53 41 0.25
54 15 0.09
55 63 0.38
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAAGC
Found at i:69678518 original size:108 final size:110
Alignment explanation
Indices: 69678322--69678520 Score: 287
Period size: 108 Copynumber: 1.8 Consensus size: 110
69678312 AAGGATACCT
* *
69678322 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAAGCAAGGATATCATATAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAAGCAAGGACACCATATAAGACCA
*
69678387 TGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTCCCA
* * * *
69678432 TGTAAGACCATGCTAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGACACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAAGCAAGGACACCATATAAGACC
* *
69678494 ATGTCGAGACATGGCAATGGTAAGTTT
65 ATGTCAAGACATGGCAATGATAAGTTT
69678521 GAAAAGGATA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.58
109 7 0.09
110 23 0.29
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAAGCAAGGACACCATATAAGACCA
TGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTCCCA
Found at i:69685288 original size:70 final size:71
Alignment explanation
Indices: 69685201--69685345 Score: 247
Period size: 70 Copynumber: 2.1 Consensus size: 71
69685191 CAACAGGTGC
* *
69685201 TACAAATTCCCATAGCTCTAAGATGCCAACAAACACTCGGATATCTTTACTGAGGCTGTCCTCAA
1 TACAAATTCCCACAGCTCTAAGATGCCAACAAACACTCGGATATCTTTACTGAGGCCGTCCTCAA
69685266 ACCT-T
66 ACCTCT
* *
69685271 TACAAATTCCCACAGCTCTATGATGCCAACAAACACTCGGATATCTTTATTGAGGCCGTCCTCAA
1 TACAAATTCCCACAGCTCTAAGATGCCAACAAACACTCGGATATCTTTACTGAGGCCGTCCTCAA
69685336 ACCTCT
66 ACCTCT
69685342 TACA
1 TACA
69685346 CATGGTGGCT
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
70 65 0.93
71 5 0.07
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.27
Consensus pattern (71 bp):
TACAAATTCCCACAGCTCTAAGATGCCAACAAACACTCGGATATCTTTACTGAGGCCGTCCTCAA
ACCTCT
Found at i:69703580 original size:24 final size:24
Alignment explanation
Indices: 69703528--69703685 Score: 104
Period size: 24 Copynumber: 6.5 Consensus size: 24
69703518 AATGACATTG
* *
69703528 GCACTAAGTGTGCAGATTTTGAATG
1 GCACTATGTGTGCAGA-TTTGAATA
*
69703553 GCACTATGTGTGCAGAATTGAATA
1 GCACTATGTGTGCAGATTTGAATA
*
69703577 GCACTATGTGTGCTGATTTGAAT-
1 GCACTATGTGTGCAGATTTGAATA
* * ** * *
69703600 GTCAATACGAGTGTGTGGATTTCTAA-G
1 G-CACTA--TGTGTGCAGATTT-GAATA
* * * * *
69703627 GCACTATGTGTGCGGGTTAGCATG
1 GCACTATGTGTGCAGATTTGAATA
* *
69703651 GCACTAAGTGTGCGGATTTGAATA
1 GCACTATGTGTGCAGATTTGAATA
69703675 GCACTATGTGT
1 GCACTATGTGT
69703686 ACGAAATCGA
Statistics
Matches: 104, Mismatches: 23, Indels: 13
0.74 0.16 0.09
Matches are distributed among these distances:
23 2 0.02
24 70 0.67
25 15 0.14
26 14 0.13
27 3 0.03
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.32
Consensus pattern (24 bp):
GCACTATGTGTGCAGATTTGAATA
Found at i:69709272 original size:93 final size:93
Alignment explanation
Indices: 69709163--69709335 Score: 328
Period size: 93 Copynumber: 1.9 Consensus size: 93
69709153 CGCCCATAAG
* *
69709163 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69709228 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
69709256 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69709321 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
69709336 CAAATATCCT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
93 78 1.00
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.19
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:69709331 original size:46 final size:46
Alignment explanation
Indices: 69709156--69709331 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
69709146 TGTAACCCGC
* *
69709156 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
69709202 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
*
69709252 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
69709295 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
69709332 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:69711645 original size:39 final size:39
Alignment explanation
Indices: 69711532--69711726 Score: 212
Period size: 39 Copynumber: 4.9 Consensus size: 39
69711522 CTCGTTCAAA
* * * *
69711532 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
69711573 -GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
* *
69711612 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * * * *
69711651 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCTCATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * *
69711690 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
69711727 TTCATACACA
Statistics
Matches: 137, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 98 0.72
40 39 0.28
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:69711700 original size:78 final size:79
Alignment explanation
Indices: 69711532--69711728 Score: 245
Period size: 78 Copynumber: 2.5 Consensus size: 79
69711522 CTCGTTCAAA
* * * * * **
69711532 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGACTTAACCCGGATAT
69711597 CACAACTCGCACAAT
65 CACAACTCGCACAAT
*
69711612 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGG-CTTAGCCCGGATATC
1 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGACTTAACCCGGATATC
* * *
69711676 ACAATTCGCTCATT
66 ACAACTCGCACAAT
* *
69711690 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT
69711729 CATACACACC
Statistics
Matches: 103, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
78 59 0.57
79 34 0.33
80 10 0.10
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.25
Consensus pattern (79 bp):
CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGACTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:69719393 original size:39 final size:39
Alignment explanation
Indices: 69719280--69719474 Score: 221
Period size: 39 Copynumber: 4.9 Consensus size: 39
69719270 CTCGTTCAAA
* * * *
69719280 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
69719321 -GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
* *
69719360 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * * *
69719399 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * *
69719438 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
69719475 TTCATACACA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
39 100 0.72
40 39 0.28
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:69719443 original size:78 final size:79
Alignment explanation
Indices: 69719280--69719476 Score: 254
Period size: 78 Copynumber: 2.5 Consensus size: 79
69719270 CTCGTTCAAA
* * * * * **
69719280 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGACTTAACCCGGATAT
69719345 CACAACTCGCACAAT
65 CACAACTCGCACAAT
*
69719360 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGG-CTTAGCCCGGATATC
1 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGACTTAACCCGGATATC
* *
69719424 ACAATTCGCACATT
66 ACAACTCGCACAAT
* *
69719438 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT
69719477 CATACACATC
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
78 60 0.58
79 34 0.33
80 10 0.10
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (79 bp):
CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGACTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:69719475 original size:39 final size:39
Alignment explanation
Indices: 69719320--69719476 Score: 244
Period size: 39 Copynumber: 4.0 Consensus size: 39
69719310 CCCGCACAAA
* * *
69719320 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACATT
* *
69719360 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
69719399 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
69719438 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
69719477 CATACACATC
Statistics
Matches: 108, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 96 0.89
40 11 0.10
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.27
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
Found at i:69728224 original size:20 final size:20
Alignment explanation
Indices: 69728199--69728245 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
69728189 ATTCTGATAT
69728199 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
69728219 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
69728239 ACATGAT
1 ACATGAT
69728246 GTATTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:69728359 original size:26 final size:26
Alignment explanation
Indices: 69728293--69728388 Score: 135
Period size: 25 Copynumber: 3.8 Consensus size: 26
69728283 AGGAAGTACA
* * *
69728293 AAAAGGGCTTTTTCTCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTATCG
69728319 AAAA-GGCTTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTTGCCCCAGTTTATCG
69728344 AAAAGGGCTTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTTGCCCCAGTTTATCG
*
69728369 AAAAGGGC-TTTACCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
69728389 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
24 11 0.17
25 30 0.46
26 24 0.37
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTATCG
Found at i:69728378 original size:51 final size:50
Alignment explanation
Indices: 69728293--69728388 Score: 131
Period size: 51 Copynumber: 1.9 Consensus size: 50
69728283 AGGAAGTACA
* * *
69728293 AAAAGGGCTTTTTCTCCAGTTTACCGAAAAGGCTTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTTGCCCCAGTTTACCGAAAAGGC-TTTACCCCAGTTTATCG
*
69728344 AAAAGGGCTTTTGCCCCAGTTTATC-AAAAGGGCTTTACCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTTTACCGAAAA-GGCTTTACCCCAGTT
69728389 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
50 15 0.38
51 25 0.62
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (50 bp):
AAAAGGGCTTTTGCCCCAGTTTACCGAAAAGGCTTTACCCCAGTTTATCG
Found at i:69728401 original size:24 final size:24
Alignment explanation
Indices: 69728293--69728401 Score: 96
Period size: 25 Copynumber: 4.4 Consensus size: 24
69728283 AGGAAGTACA
* * *
69728293 AAAAGGGCTTTTTCTCCAGTTTACC
1 AAAAGGGC-TTTACCCCAGTTTATC
*
69728318 GAAAA-GGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTACCCCAGTTTATC
*
69728343 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTACCCCAGTTTATC
*
69728369 AAAAGGGCTTTACCCCAG-TTATT
1 AAAAGGGCTTTACCCCAGTTTATC
69728392 AAAAGAGGCT
1 AAAAG-GGCT
69728402 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
23 9 0.12
24 13 0.17
25 30 0.39
26 24 0.32
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTTACCCCAGTTTATC
Found at i:69728644 original size:31 final size:31
Alignment explanation
Indices: 69728609--69728668 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
69728599 CGTTTACAGT
**
69728609 AAAGGCTTTGGCCCAGTAATATGAAATATCA
1 AAAGGCTTCAGCCCAGTAATATGAAATATCA
**
69728640 AAAGGCTTCAGCCCAGTGTTATGAAATAT
1 AAAGGCTTCAGCCCAGTAATATGAAATAT
69728669 GAAATATGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATCA
Found at i:69739280 original size:46 final size:46
Alignment explanation
Indices: 69739230--69739358 Score: 177
Period size: 46 Copynumber: 2.8 Consensus size: 46
69739220 TGGTTGAGCA
*
69739230 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* **
69739276 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * **
69739322 GCCGAGCTCATTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69739359 GCGGGTTACA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:69745982 original size:27 final size:26
Alignment explanation
Indices: 69745947--69746058 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
69745937 AGCATGGCTG
* *
69745947 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
69745973 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
69746001 CCAGAACAGATACATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
69746028 CCAGATCAAATAATTGTGGCATACCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
69746055 CCAG
1 CCAG
69746059 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:69746011 original size:54 final size:54
Alignment explanation
Indices: 69745947--69746058 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
69745937 AGCATGGCTG
* *
69745947 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATACATGTGACAGAGCCACCAGAT-CAAATAATCGTGGCAGAACCA
* * * *
69746001 CCAGAACAGATACATGTGGCAGAGCCACCAGATCAAATAATTGTGGCATACCCA
1 CCAGAACAGATACATGTGACAGAGCCACCAGATCAAATAATCGTGGCAGAACCA
69746055 CCAG
1 CCAG
69746059 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.15
Consensus pattern (54 bp):
CCAGAACAGATACATGTGACAGAGCCACCAGATCAAATAATCGTGGCAGAACCA
Found at i:69747489 original size:24 final size:24
Alignment explanation
Indices: 69747462--69747521 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
69747452 CCTTGATTAG
69747462 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
*
69747486 CTCCTAAATCCTATCCCTTATCAT
1 CTCCTAAATCCTATCCCTTATCAA
69747510 CTCCTAAATCCT
1 CTCCTAAATCCT
69747522 CTCCTGACAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.27, C:0.38, G:0.00, T:0.35
Consensus pattern (24 bp):
CTCCTAAATCCTATCCCTTATCAA
Found at i:69753778 original size:27 final size:26
Alignment explanation
Indices: 69753743--69753854 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
69753733 AGCATGGCTG
* *
69753743 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
69753769 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
69753797 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
69753824 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
69753851 CCAG
1 CCAG
69753855 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:69753807 original size:54 final size:54
Alignment explanation
Indices: 69753743--69753854 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
69753733 AGCATGGCTG
*
69753743 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * *
69753797 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
69753851 CCAG
1 CCAG
69753855 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:69755886 original size:41 final size:39
Alignment explanation
Indices: 69755794--69755945 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
69755784 ATCACGATTT
*
69755794 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
69755834 GCACGAATGCCTTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCC-TTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * * ** *
69755875 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
69755915 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
69755946 TATTCAATTT
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
39 1 0.01
40 59 0.65
41 31 0.34
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:69762352 original size:27 final size:26
Alignment explanation
Indices: 69762317--69762428 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
69762307 AGCATGGCTG
* *
69762317 CCAGAACAGATAATGTGACAAAGTCA
1 CCAGAACAGATAATGTGGCAAAGCCA
69762343 CCAGATACAGATAATCGTGGCAGAA-CCA
1 CCAGA-ACAGATAAT-GTGGCA-AAGCCA
*
69762371 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAAAGCCA
*
69762398 CCAGAACAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAAAGCCA
69762425 CCAG
1 CCAG
69762429 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
26 7 0.09
27 53 0.70
28 14 0.18
29 2 0.03
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAAAGCCA
Found at i:69762380 original size:54 final size:54
Alignment explanation
Indices: 69762317--69762428 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
69762307 AGCATGGCTG
*
69762317 CCAGAACAGATA-ATGTGACAAAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGA-ACAGATAATCGTGGCAGAACCA
* * * * *
69762371 CCAGAACAGATATATGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGAACAGATAATCGTGGCAGAACCA
69762425 CCAG
1 CCAG
69762429 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 35 0.69
55 16 0.31
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.15
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAAAGCCACCAGAACAGATAATCGTGGCAGAACCA
Found at i:69764424 original size:40 final size:38
Alignment explanation
Indices: 69764375--69764482 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
69764365 ATCACGATTT
*
69764375 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
69764415 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
69764455 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
69764483 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:69767167 original size:24 final size:24
Alignment explanation
Indices: 69767140--69767210 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
69767130 CTAGATTTCC
**
69767140 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
69767164 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
69767188 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
69767211 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:69767177 original size:48 final size:48
Alignment explanation
Indices: 69767117--69767210 Score: 120
Period size: 48 Copynumber: 1.9 Consensus size: 48
69767107 ACCTCTTATT
* **
69767117 CCTTGATCAACTCCTAGATTTCC-TCCCTTATCTGCTCCTAAATCCTATC
1 CCTTGATCAACTCCTA-A-ATCCATCCCTTATCAACTCCTAAATCCTATC
69767166 CCTT-ATCAACTCCTAAATCCTATCCCTTATCAACTCCTAAATCCT
1 CCTTGATCAACTCCTAAATCC-ATCCCTTATCAACTCCTAAATCCT
69767211 CTCCTGACAG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
46 3 0.08
47 1 0.03
48 32 0.80
49 4 0.10
ACGTcount: A:0.24, C:0.37, G:0.03, T:0.35
Consensus pattern (48 bp):
CCTTGATCAACTCCTAAATCCATCCCTTATCAACTCCTAAATCCTATC
Found at i:69771752 original size:24 final size:24
Alignment explanation
Indices: 69771720--69771782 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
69771710 AATCTCAAAT
*
69771720 GCACTATGTGTGCGATTTATTATG
1 GCACTATGTGTGCGATTTACTATG
69771744 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
69771768 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
69771783 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:69779616 original size:24 final size:24
Alignment explanation
Indices: 69779584--69779646 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
69779574 AATCTCAAAT
69779584 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
69779608 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
69779632 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
69779647 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:69781683 original size:2 final size:2
Alignment explanation
Indices: 69781676--69781710 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
69781666 TCATAACAAC
* *
69781676 AT AT AT AT AT AT AT AT AG AT AT AT GT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69781711 GCATATGACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (2 bp):
AT
Found at i:69783194 original size:48 final size:48
Alignment explanation
Indices: 69783067--69783202 Score: 146
Period size: 48 Copynumber: 2.8 Consensus size: 48
69783057 CATTAGGGTT
* * * * *
69783067 ATATGAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCG
1 ATATGAGATTCCATATAAAACCATGTCTGGGACATGGCATTGACATCG
* * * * * *
69783115 ATATGAGATTCCATGTAATACAATATTTGGGATATGGCATTGACATCG
1 ATATGAGATTCCATATAAAACCATGTCTGGGACATGGCATTGACATCG
* * *
69783163 ATATGTGATTTCGTATAAAACCATGTCTGGGACATGGCAT
1 ATATGAGATTCCATATAAAACCATGTCTGGGACATGGCAT
69783203 CGATATGAGA
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (48 bp):
ATATGAGATTCCATATAAAACCATGTCTGGGACATGGCATTGACATCG
Found at i:69790310 original size:39 final size:40
Alignment explanation
Indices: 69790221--69790390 Score: 238
Period size: 39 Copynumber: 4.3 Consensus size: 40
69790211 CATTTGAATG
69790221 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
69790261 ATATCCGGGCTAAGACCTGAAGGCATTTG-GCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
69790300 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
69790340 ATGTCCGGGTTAAGA-CCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
69790379 ATATCC-GGCTAA
1 ATATCCGGGCTAA
69790391 ATCCTGAAGA
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 5 0.04
39 61 0.53
40 49 0.43
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:69790354 original size:79 final size:79
Alignment explanation
Indices: 69790221--69790390 Score: 254
Period size: 79 Copynumber: 2.2 Consensus size: 79
69790211 CATTTGAATG
*
69790221 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCTGAAGGC-
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACC-GAAGGCA
* *
69790285 ATTTGGCGAGTTGTT
65 ATTGGGCGAGTGGTT
* * *
69790300 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATGTCCGGGTTAAGACCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCGAAGGCAA
*
69790365 TTGGGCGTGTGGTT
66 TTGGGCGAGTGGTT
69790379 ATATCC-GGCTAA
1 ATATCCGGGCTAA
69790391 ATCCTGAAGA
Statistics
Matches: 82, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
78 12 0.15
79 70 0.85
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCGAAGGCAA
TTGGGCGAGTGGTT
Found at i:69798271 original size:40 final size:40
Alignment explanation
Indices: 69798216--69798356 Score: 196
Period size: 40 Copynumber: 3.5 Consensus size: 40
69798206 CATTTGAATG
69798216 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
69798256 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
69798296 ATGTCCGGGATAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
69798336 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
69798357 AAACTTGGGT
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
38 1 0.01
39 12 0.13
40 77 0.86
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:69801128 original size:22 final size:22
Alignment explanation
Indices: 69801102--69801146 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
69801092 AATCAATGAT
69801102 AGTTTCCGATAAATGATAAATG
1 AGTTTCCGATAAATGATAAATG
69801124 AGTTTCCGATAAATGATAAATG
1 AGTTTCCGATAAATGATAAATG
69801146 A
1 A
69801147 TAAAAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.31
Consensus pattern (22 bp):
AGTTTCCGATAAATGATAAATG
Found at i:69801517 original size:57 final size:58
Alignment explanation
Indices: 69801379--69801518 Score: 133
Period size: 57 Copynumber: 2.4 Consensus size: 58
69801369 GTCATTATGG
* * * * * **
69801379 AAAGGATTTAGCCTGAACTGGTAATCCTGATATAAGTCCTCTTGAGCATATGTTATGG
1 AAAGGATTTAGCCTGGACTGGTAATCCTGATACAAGCCCTCTTAAGCATATGTCATAA
** * * *
69801437 ATTGGATTTAGCCCAGG-CGGGTAATCCTGAT-CAAGCCCT-TTAAAGCTTATGTCATAA
1 AAAGGATTTAG-CCTGGACTGGTAATCCTGATACAAGCCCTCTT-AAGCATATGTCATAA
69801494 AAAGGATTTAGCCTGGACTGGTAAT
1 AAAGGATTTAGCCTGGACTGGTAAT
69801519 GTAACACCCC
Statistics
Matches: 63, Mismatches: 16, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
56 6 0.10
57 32 0.51
58 22 0.35
59 3 0.05
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (58 bp):
AAAGGATTTAGCCTGGACTGGTAATCCTGATACAAGCCCTCTTAAGCATATGTCATAA
Found at i:69810128 original size:27 final size:26
Alignment explanation
Indices: 69810084--69810136 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
69810074 ATCATAGCAC
*
69810084 AAATCAGTCATTTACCCTCGAGGGGTA
1 AAATCAGTCATTTACCCT-AAGGGGTA
*
69810111 AAAT-AGTCATTTTCCCCTAAGGGGTA
1 AAATCAGTCA-TTTACCCTAAGGGGTA
69810137 TTTTTGTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
AAATCAGTCATTTACCCTAAGGGGTA
Found at i:69813028 original size:37 final size:37
Alignment explanation
Indices: 69812966--69813111 Score: 204
Period size: 37 Copynumber: 3.9 Consensus size: 37
69812956 AGCTCAGATG
* *
69812966 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
69813003 AAATCTCCACACGTAGTCATTGGGTCTTACTCGGA-A
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
69813039 TATATTTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 -AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
69813077 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
69813112 ATATATTTCC
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
36 1 0.01
37 92 0.98
38 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:69813092 original size:74 final size:74
Alignment explanation
Indices: 69812984--69813122 Score: 251
Period size: 74 Copynumber: 1.9 Consensus size: 74
69812974 ACACGAAGTT
* *
69812984 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATTGGGTCTTACTCGGAATATATTTCCA
1 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAATATATTTCCA
69813049 CATGTAGTC
66 CATGTAGTC
*
69813058 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAATATATTTCCA
1 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAATATATTTCCA
69813123 AGTTTCATGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 62 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (74 bp):
ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAATATATTTCCA
CATGTAGTC
Found at i:69813311 original size:48 final size:48
Alignment explanation
Indices: 69813258--69813545 Score: 450
Period size: 48 Copynumber: 6.0 Consensus size: 48
69813248 CCACACCTCC
* * * *
69813258 TACATACTTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69813306 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * *
69813356 TATATATTTCACATTAGCCATTTGACTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69813404 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATATCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
69813452 TACATAATTCACATTAGTCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69813500 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
69813546 TTATCTTGTG
Statistics
Matches: 220, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
48 177 0.80
50 43 0.20
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:69813442 original size:146 final size:144
Alignment explanation
Indices: 69813258--69813544 Score: 457
Period size: 146 Copynumber: 2.0 Consensus size: 144
69813248 CCACACCTCC
* * * *
69813258 TACATACTTCACACTAGCCCTTCGGCTTTACCACATATACGTATCTCATACATATTTCACACTAG
1 TACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATATCATACATAATTCACACTAG
* *
69813323 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTTGACTTTACC
66 CCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGACTTTACC
69813388 ACATATACATATCCCA
129 ACATATACATATCCCA
* * *
69813404 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATATCATACATAATTCACATTAG
1 TACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATATCATACATAATTCACACTAG
* *
69813469 TCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGACTTTACCAC
69813534 ATATACATATC
131 ATATACATATC
69813545 TTTATCTTGT
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
144 43 0.33
146 87 0.67
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (144 bp):
TACATACTTCACACTAGCCATTCGGCTTTACCACATATACATATATCATACATAATTCACACTAG
CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGACTTTACCAC
ATATACATATCCCA
Found at i:69817401 original size:55 final size:55
Alignment explanation
Indices: 69817318--69817435 Score: 166
Period size: 55 Copynumber: 2.2 Consensus size: 55
69817308 GCACTTAAAA
* * * * *
69817318 TTTT-AAGTCATTTTTGTACATGGGCAGGCCACACAAGCGTGTGCCATGGCCGTG
1 TTTTAAAGTCAGTATTGTACACGGGCAGGCCACACAAGCGTATGCCATAGCCGTG
**
69817372 TTTTAAAGTCAGTATTGTACACGGGCAGGCCACACGGGCGTATGCCATAGCCGTG
1 TTTTAAAGTCAGTATTGTACACGGGCAGGCCACACAAGCGTATGCCATAGCCGTG
69817427 TTTTAAAGT
1 TTTTAAAGT
69817436 TAGTGTTGCA
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
54 4 0.07
55 52 0.93
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (55 bp):
TTTTAAAGTCAGTATTGTACACGGGCAGGCCACACAAGCGTATGCCATAGCCGTG
Found at i:69822235 original size:30 final size:29
Alignment explanation
Indices: 69822201--69822258 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
69822191 AACGAAAGTT
69822201 TTGGCACTAAGTGTGCGATTTAAACTAGCC
1 TTGGCACTAAGTGTGCGATTT-AACTAGCC
69822231 TTGGCACTAAGTGTGCGATTTAACTAGC
1 TTGGCACTAAGTGTGCGATTTAACTAGC
69822259 TCTGGCCACT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (29 bp):
TTGGCACTAAGTGTGCGATTTAACTAGCC
Found at i:69824781 original size:40 final size:40
Alignment explanation
Indices: 69824696--69824846 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
69824686 AATTGAATGA
* * *
69824696 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
69824736 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
69824777 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
69824816 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
69824847 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:69824860 original size:40 final size:40
Alignment explanation
Indices: 69824733--69824862 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
69824723 ATGCTGGAAA
* * * *
69824733 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
69824773 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
69824813 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
69824853 TTATATCCGG
1 TTATATCCGG
69824863 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:69832158 original size:30 final size:29
Alignment explanation
Indices: 69832122--69832179 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
69832112 AACGAAGGTT
69832122 TTGGCACTAAGTGTACGATTTAAACTAGCC
1 TTGGCACTAAGTGTACGATTT-AACTAGCC
*
69832152 TTGGCACTAAGTGTGCGATTTAACTAGC
1 TTGGCACTAAGTGTACGATTTAACTAGC
69832180 TCTGGCTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (29 bp):
TTGGCACTAAGTGTACGATTTAACTAGCC
Found at i:69833660 original size:40 final size:39
Alignment explanation
Indices: 69833615--69833822 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
69833605 CGGAATACAA
*
69833615 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
69833655 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
69833695 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69833735 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
69833775 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
69833815 CCGGATAT
1 CCGGATAT
69833823 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:69833755 original size:80 final size:81
Alignment explanation
Indices: 69833615--69833820 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
69833605 CGGAATACAA
* * *
69833615 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
69833679 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
69833695 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
69833758 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
69833775 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
69833821 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:69841318 original size:40 final size:39
Alignment explanation
Indices: 69841273--69841480 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
69841263 CGGAATACAA
*
69841273 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
69841313 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
69841353 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69841393 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
69841433 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
69841473 CCGGATAT
1 CCGGATAT
69841481 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:69841413 original size:80 final size:81
Alignment explanation
Indices: 69841273--69841478 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
69841263 CGGAATACAA
* * *
69841273 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
69841337 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
69841353 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
69841416 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
69841433 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
69841479 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:69856481 original size:40 final size:40
Alignment explanation
Indices: 69856260--69856475 Score: 337
Period size: 40 Copynumber: 5.4 Consensus size: 40
69856250 AAACCAAGTA
* *
69856260 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
69856299 CCTTCGGGATTTAGCCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69856339 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69856379 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69856419 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69856459 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
69856476 AGTTATCATC
Statistics
Matches: 163, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 14 0.09
40 149 0.91
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69862992 original size:2 final size:2
Alignment explanation
Indices: 69862985--69863017 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
69862975 AAACTCTTAG
69862985 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
69863018 TTTACTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:69864351 original size:39 final size:39
Alignment explanation
Indices: 69864297--69864474 Score: 302
Period size: 39 Copynumber: 4.6 Consensus size: 39
69864287 ATCATAATTG
*
69864297 TATGTGCTGAAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
69864336 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
69864375 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAAGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* * *
69864414 TATGTGCTGGAATTTTATCGGGACTTCAGGTCCACAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
69864453 TATGAGCTGGAATTATATCCGG
1 TATGTGCTGGAATTATATCCGG
69864475 GCTTAAATTC
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 130 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (39 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:69865419 original size:27 final size:28
Alignment explanation
Indices: 69865371--69865439 Score: 72
Period size: 27 Copynumber: 2.5 Consensus size: 28
69865361 GTTAGGGGCG
* *
69865371 TTACAGAAATACCC-CTGATTTGTGAAA
1 TTACTGAAATACCCTCTGATTTGTAAAA
* *
69865398 TT-TTCGAAATACCCTC-GGTTTGTAAAA
1 TTACT-GAAATACCCTCTGATTTGTAAAA
69865425 TTACTGAAATACCCT
1 TTACTGAAATACCCT
69865440 TGTATCGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
27 32 0.94
28 2 0.06
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (28 bp):
TTACTGAAATACCCTCTGATTTGTAAAA
Found at i:69865462 original size:27 final size:27
Alignment explanation
Indices: 69865432--69865519 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 27
69865422 AAATTACTGA
* * *
69865432 AATACCCTTGTATCGTAAAATGACCGT
1 AATACCCCTGTATGGTAAAATGACCAT
* *
69865459 AATACCCCTATAGGGTAAAATGACCAT
1 AATACCCCTGTATGGTAAAATGACCAT
*
69865486 AATACCCCTGTATGGTAAAATGACGAT
1 AATACCCCTGTATGGTAAAATGACCAT
*
69865513 TATACCC
1 AATACCC
69865520 TTACGTTCTG
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCAT
Found at i:69865689 original size:27 final size:26
Alignment explanation
Indices: 69865645--69865730 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 26
69865635 ATGGAGGAAG
* *
69865645 TACTG-TACTGGTGACTATGTCACAT
1 TACTGTTACTGGTGGCTATGCCACAT
69865670 TCACTGTTACTGGTGGCTATGCCACAAT
1 T-ACTGTTACTGGTGGCTATGCCAC-AT
* *
69865698 TACTGATACTAGTGGCT-TGCCACATT
1 TACTGTTACTGGTGGCTATGCCACA-T
69865724 TACTGTT
1 TACTGTT
69865731 TATGGCAGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.04
26 17 0.33
27 30 0.58
28 3 0.06
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:69868714 original size:31 final size:31
Alignment explanation
Indices: 69868679--69868756 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
69868669 CTTTGGAGGG
*
69868679 TCACACGTCCATGTGGGTAGGCCGTGTGGTC
1 TCACACGTCCATGTGGGTAGGCCGTGTCGTC
* *
69868710 TCACACATCCATGTGGGTAGGCTGTGTCGTC
1 TCACACGTCCATGTGGGTAGGCCGTGTCGTC
* *
69868741 TCACACGCCCGTGTGG
1 TCACACGTCCATGTGG
69868757 ATTGGGACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.14, C:0.28, G:0.32, T:0.26
Consensus pattern (31 bp):
TCACACGTCCATGTGGGTAGGCCGTGTCGTC
Found at i:69870575 original size:41 final size:41
Alignment explanation
Indices: 69870482--69870617 Score: 161
Period size: 41 Copynumber: 3.3 Consensus size: 41
69870472 ACGTTCCGAG
* * *
69870482 ATAGCTTCAGCTAT-ATAAAGCACTTAGTGTACGA-ATCGGA
1 ATAGCTTCGGCTATGA-AAGGCACTTAGTGTGCGAGATCGGA
*
69870522 ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGA-CTGA
1 ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATCGGA
***
69870562 CATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATTATA
1 -ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATCGGA
*
69870604 ATATCTTCGGCTAT
1 ATAGCTTCGGCTAT
69870618 CCTTTGGCAC
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
40 32 0.38
41 51 0.61
42 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (41 bp):
ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATCGGA
Found at i:69874542 original size:40 final size:40
Alignment explanation
Indices: 69874487--69874694 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
69874477 TGAATGATAC
* *
69874487 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
69874527 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
69874567 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
69874607 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
69874647 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
69874687 CC-GGCTAA
1 CCGGGCTAA
69874695 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 6 0.04
40 138 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:69885266 original size:40 final size:40
Alignment explanation
Indices: 69885211--69885418 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
69885201 TGAATGATAC
* *
69885211 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
69885251 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
69885291 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
69885331 CCGGGCTAAGACCCGAAGCCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
69885371 CCAGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
69885411 CC-GGCTAA
1 CCGGGCTAA
69885419 ATTCCGAAGA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 135 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:69890169 original size:43 final size:42
Alignment explanation
Indices: 69890110--69890274 Score: 179
Period size: 43 Copynumber: 3.9 Consensus size: 42
69890100 TAGCTCGTAC
* * * *
69890110 AATGCC-ATATCCCAGATATGGTCTTACGTGTTATCAAATAT
1 AATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATAT
* * * * * *
69890151 CAATGCCACTGTCCCAGATAGGGTCTTACATGAAATCGATTAAT
1 -AATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAAT-AT
* *
69890195 GATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAATAT
1 AATGCCAATGTCCCAGACATGGTCTTACATGTAATC-AAATAT
*
69890238 AATGCCAATGTCCCAGACATGGTCATACATGTAATCA
1 AATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
69890275 CATCTCCATA
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 6 0.06
43 92 0.90
44 4 0.04
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (42 bp):
AATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATAT
Found at i:69890267 original size:86 final size:85
Alignment explanation
Indices: 69890111--69890273 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 85
69890101 AGCTCGTACA
* * * * *
69890111 ATGCCATATCCCAGATATGGTCTTACGTGTTATCAAATATCAATGCCACTGTCCCAGATAGGGTC
1 ATGCCATATCCCAGACATGGTCTTACATGTAATCAAATATCAATGCCAATGTCCCAGACAGGGTC
*
69890176 TTACATGAAATCGATTAATG
66 ATACATGAAATCGATTAATG
* * *
69890196 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAATAT-AATGCCAATGTCCCAGACATGG
1 ATGCC-ATATCCCAGACATGGTCTTACATGTAATC-AAATATCAATGCCAATGTCCCAGACAGGG
*
69890260 TCATACATGTAATC
64 TCATACATGAAATC
69890274 ACATCTCCAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
85 5 0.08
86 56 0.85
87 5 0.08
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (85 bp):
ATGCCATATCCCAGACATGGTCTTACATGTAATCAAATATCAATGCCAATGTCCCAGACAGGGTC
ATACATGAAATCGATTAATG
Found at i:69899839 original size:29 final size:29
Alignment explanation
Indices: 69899799--69899872 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
69899789 GTTGAGAGAT
* *
69899799 TGGCACTGAGTGTGCGAGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
69899828 TGGCACTAAGTGTGCGAGTTTAAAGTATA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
69899857 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69899873 CGGCTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:69907392 original size:59 final size:58
Alignment explanation
Indices: 69907277--69907388 Score: 147
Period size: 59 Copynumber: 1.9 Consensus size: 58
69907267 GGAAAAAAAA
*
69907277 AAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAATGTACTAAGGAAAG
1 AAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAATATACTAAGGAAAG
* ***
69907335 AAAAGAAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAA-ATACTAAGG
1 AAAAGAAAAAAAA-ATGTTCATCCTTCTC-CATAGGCTTGGCCGAATATACTAAGG
69907389 GAAAAGGGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
58 23 0.49
59 24 0.51
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (58 bp):
AAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAATATACTAAGGAAAG
Done.