Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 224 of 433
Found at i:69908647 original size:40 final size:40
Alignment explanation
Indices: 69908581--69908747 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
69908571 AAATTGAATG
* * *
69908581 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
69908620 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
69908660 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
69908700 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
69908740 ATATCCGG
1 ATATCCGG
69908748 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69916642 original size:40 final size:40
Alignment explanation
Indices: 69916576--69916742 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
69916566 AAATTGAATG
* * *
69916576 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
69916615 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
69916655 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
69916695 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
69916735 ATATCCGG
1 ATATCCGG
69916743 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69919068 original size:29 final size:29
Alignment explanation
Indices: 69919028--69919130 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
69919018 GTTGAGAGAT
*
69919028 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
69919057 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
69919086 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
69919115 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69919131 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:69922413 original size:20 final size:20
Alignment explanation
Indices: 69922390--69922435 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
69922380 TAGCGGCTCG
69922390 AAGCCATCAATAGTGCCACA
1 AAGCCATCAATAGTGCCACA
*
69922410 AAGCCATCAATAGTGGCACA
1 AAGCCATCAATAGTGCCACA
69922430 AAGCCA
1 AAGCCA
69922436 AAAATATCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.41, C:0.28, G:0.17, T:0.13
Consensus pattern (20 bp):
AAGCCATCAATAGTGCCACA
Found at i:69922441 original size:20 final size:20
Alignment explanation
Indices: 69922398--69922441 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
69922388 CGAAGCCATC
**
69922398 AATAGTGCCACAAAGCCATC
1 AATAGTGCCACAAAGCCAAA
*
69922418 AATAGTGGCACAAAGCCAAA
1 AATAGTGCCACAAAGCCAAA
69922438 AATA
1 AATA
69922442 TCACAGCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.48, C:0.23, G:0.16, T:0.14
Consensus pattern (20 bp):
AATAGTGCCACAAAGCCAAA
Found at i:69926564 original size:93 final size:93
Alignment explanation
Indices: 69926405--69926575 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
69926395 GGATGGTTGA
* * *
69926405 GCATCTGAACTCGTTGAGTTGAGTCCAATTTCACTTATGGATGAGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGAGAACGTCCGAACTCGTTGAGT
69926470 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * * * *
69926498 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACG-CTTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGAGAACGTC-CGAACTCGTTGAG
69926562 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
69926576 ACTTATGGGC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 1 0.01
93 67 0.99
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGAGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:69929352 original size:15 final size:15
Alignment explanation
Indices: 69929332--69929400 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
69929322 GTATCTTGGG
*
69929332 TTTCTTTATCCTGGA
1 TTTCTTTATCCTAGA
* *
69929347 TCTCTTTATTCTAGA
1 TTTCTTTATCCTAGA
*
69929362 TTTCTTTATTCTAGA
1 TTTCTTTATCCTAGA
* * *
69929377 TTTCTCTATCTTGGA
1 TTTCTTTATCCTAGA
69929392 TTTCTTTAT
1 TTTCTTTAT
69929401 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.16, C:0.17, G:0.09, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTAGA
Found at i:69929394 original size:30 final size:30
Alignment explanation
Indices: 69929323--69929402 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
69929313 CATAATATCG
* * * *
69929323 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTAGATCTCTC
* *
69929353 TAT-TCTAGATTTCTTTATTCTAGATTTCTC
1 TATCT-TGGATTTCTTTATTCTAGATCTCTC
69929383 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
69929403 GGTTTTCTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
29 1 0.02
30 39 0.95
31 1 0.02
ACGTcount: A:0.15, C:0.17, G:0.11, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTAGATCTCTC
Found at i:69931725 original size:46 final size:46
Alignment explanation
Indices: 69931675--69931850 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
69931665 TGGTTGAGCA
*
69931675 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
69931721 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* **
69931766 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
69931814 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69931851 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
45 1 0.01
46 65 0.58
47 29 0.26
50 5 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69931831 original size:93 final size:93
Alignment explanation
Indices: 69931672--69931843 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
69931662 GGATGGTTGA
***
69931672 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
69931737 TGAGTCCGAGTTCAAGAGATGTAACTAG
66 TGAGTCCGAGTTCAAGAGATGTAACTAG
* * *
69931765 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
69931830 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
69931844 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCAAGAGATGTAACTAG
Found at i:69942661 original size:28 final size:28
Alignment explanation
Indices: 69942621--69942731 Score: 134
Period size: 28 Copynumber: 4.0 Consensus size: 28
69942611 CATGACTGTA
* *
69942621 AATGTGGTTGGGCCTAAT-GGCCGTATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* *
69942648 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
69942677 AATGTGATTGGGCCTAATGGGCCATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* * * *
69942705 AAAGAGATTGGGCTTAGTGGGCCATAT
1 AATGTGATTGGGCCTAATGGGCCATAT
69942732 ATAGGTATGT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
27 6 0.08
28 53 0.74
29 13 0.18
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:69942716 original size:56 final size:56
Alignment explanation
Indices: 69942619--69942728 Score: 150
Period size: 56 Copynumber: 2.0 Consensus size: 56
69942609 AGCATGACTG
* * * *
69942619 TAAATGTGGTTGGGCCTAATGGCCGTATGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
* *
69942675 TAAATGTGATTGGGCCTAATGGGCCATATGAAAGAGA-TTGGGCTTAGTGGGCCA
1 TAAATGTGATTGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGGCCA
69942729 TATATAGGTA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 34 0.72
57 13 0.28
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (56 bp):
TAAATGTGATTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
Found at i:69943313 original size:13 final size:13
Alignment explanation
Indices: 69943295--69943321 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
69943285 CACACAAACG
69943295 ATAAAATTTTCAC
1 ATAAAATTTTCAC
69943308 ATAAAATTTTCAC
1 ATAAAATTTTCAC
69943321 A
1 A
69943322 CATGTCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAAAATTTTCAC
Found at i:69945794 original size:46 final size:44
Alignment explanation
Indices: 69945643--69945862 Score: 180
Period size: 46 Copynumber: 4.8 Consensus size: 44
69945633 GGGTTATTGT
*
69945643 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATT-ATAA-
1 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGG-C-C-TTGA-AAC
* * * *
69945689 GAGCCAGTGTAAAACCATGTCT-GAGACATGGCATCGACATTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTAG-GACAT-GCATCGGCCTTGAAAC
*
69945735 GAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAAAC
1 GA--GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAAAC
* * *
69945781 GTAAGCCAGTGTAAGACATGTCTAGGACATGCTTCGG-CTATGAGAG
1 G--AGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCT-TGAAAC
*
69945827 GTGCCAGTGTAAGACCATGTCT-GGAACATGGCATCG
1 GAGCCAGTGTAAGA-CATGTCTAGG-ACAT-GCATCG
69945863 ACACAACTAT
Statistics
Matches: 144, Mismatches: 16, Indels: 28
0.77 0.09 0.15
Matches are distributed among these distances:
44 14 0.10
45 16 0.11
46 71 0.49
47 25 0.17
48 18 0.12
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAAAC
Found at i:69947431 original size:29 final size:28
Alignment explanation
Indices: 69947385--69947439 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
69947375 CCTATTCAGT
* * *
69947385 AACAGTACAGTTTGGGCCTTAGCCCTTA
1 AACAGTACAGTATAGGCCTAAGCCCTTA
69947413 AACAGTAGCAGTATAGGCCTAAGCCCT
1 AACAGTA-CAGTATAGGCCTAAGCCCT
69947440 AATTCAGTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (28 bp):
AACAGTACAGTATAGGCCTAAGCCCTTA
Found at i:69948798 original size:27 final size:27
Alignment explanation
Indices: 69948673--69948881 Score: 147
Period size: 27 Copynumber: 7.7 Consensus size: 27
69948663 TTTCATCCTA
* * * *
69948673 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
69948700 CAAGGGTA-TTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
69948726 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* *
69948755 CAAGGGTATTTCT-GTAATTTTGTAAAG
1 CAAGGGTATTT-TGGTAATTTTATAAAC
* *
69948782 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * *
69948809 TGAGGGTATTTTGGTAATTTCAAAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
69948836 C-AGCGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTATAAAC
* * *
69948863 TAGGGGTATTTGGGTAATT
1 CAAGGGTATTTTGGTAATT
69948882 CTATCCTACA
Statistics
Matches: 145, Mismatches: 30, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
26 23 0.16
27 91 0.63
28 16 0.11
29 15 0.10
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:69949030 original size:81 final size:81
Alignment explanation
Indices: 69948913--69949158 Score: 323
Period size: 81 Copynumber: 3.0 Consensus size: 81
69948903 GTAATTTCAC
* * * * * *
69948913 AATCAAGGGTAAAATGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCAAGGGT
1 AATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTCTATAAATCAAGGGT
* *
69948977 AAAACGATAATTTTGTA
65 AAAACGGTAATTCTGTA
* *
69948994 AATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTA
* *
69949059 AAATGGTAATTCTATA
66 AAACGGTAATTCTGTA
* * * * *
69949075 ATTCGAGGGCAAAACGATAATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATTAAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTA
69949140 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
69949156 AAT
1 AAT
69949159 TGGGGGTACT
Statistics
Matches: 142, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
81 141 0.99
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTA
AAACGGTAATTCTGTA
Found at i:69949166 original size:27 final size:27
Alignment explanation
Indices: 69948913--69949158 Score: 287
Period size: 27 Copynumber: 9.1 Consensus size: 27
69948903 GTAATTTCAC
* * *
69948913 AATCAAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
69948940 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* * * * *
69948967 AATCAAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
69948994 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
69949021 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
69949048 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
69949075 ATTCGAGGGCAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
69949102 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
** * *
69949129 AATTAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
69949156 AAT
1 AAT
69949159 TGGGGGTACT
Statistics
Matches: 194, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 192 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:69949228 original size:26 final size:27
Alignment explanation
Indices: 69949173--69949233 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
69949163 GGTACTTTGA
* *
69949173 TAATTTTACAAGTTGAGGGTATTTCAG
1 TAATTTTACAAGTCGACGGTATTTCAG
*
69949200 TAATTTTACAA-TCGACGGTATTTCCG
1 TAATTTTACAAGTCGACGGTATTTCAG
69949226 TAATTTTA
1 TAATTTTA
69949234 TAAACCGTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 20 0.65
27 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (27 bp):
TAATTTTACAAGTCGACGGTATTTCAG
Found at i:69953434 original size:29 final size:29
Alignment explanation
Indices: 69953400--69953477 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
69953390 GTGACGAGAT
* *
69953400 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
69953429 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
69953458 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
69953478 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:69957987 original size:38 final size:38
Alignment explanation
Indices: 69957936--69958012 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
69957926 GGCTTTGGGA
69957936 ACAAAGTTGAGTTTTAGCACAGCATTTCACCCATAATC
1 ACAAAGTTGAGTTTTAGCACAGCATTTCACCCATAATC
69957974 ACAAAGTTGAGTTTTAGCACAGCATTTCACCCATAATC
1 ACAAAGTTGAGTTTTAGCACAGCATTTCACCCATAATC
69958012 A
1 A
69958013 GACGGCCAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (38 bp):
ACAAAGTTGAGTTTTAGCACAGCATTTCACCCATAATC
Found at i:69960119 original size:22 final size:22
Alignment explanation
Indices: 69960085--69960149 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
69960075 GTAAATACAT
*
69960085 TTGGAACACAGCCATAATCAGG
1 TTGGAACAAAGCCATAATCAGG
* *
69960107 TTGGCACAGAGCCATATAT-AGG
1 TTGGAACAAAGCCATA-ATCAGG
**
69960129 TTGGTGCAAAGCCATAATCAG
1 TTGGAACAAAGCCATAATCAG
69960150 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGAACAAAGCCATAATCAGG
Found at i:69960353 original size:41 final size:41
Alignment explanation
Indices: 69960286--69960407 Score: 147
Period size: 41 Copynumber: 3.0 Consensus size: 41
69960276 AAAAGCCACT
* * *
69960286 GGTGGATCCACGGTCATCAAGCAACCATGTGATCCTTAATC
1 GGTGGATCCACGGTCATCAAGAAACCATGCGATCCTCAATC
*
69960327 GGTGGATCCATGGTCA-CTAAGAAACCATGCGATCCTCAATC
1 GGTGGATCCACGGTCATC-AAGAAACCATGCGATCCTCAATC
* ** * *
69960368 GGTGCATCCACAATCGTCAAGCAACCATGCGATCCTCAAT
1 GGTGGATCCACGGTCATCAAGAAACCATGCGATCCTCAAT
69960408 TTCTTCCTCT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
40 1 0.01
41 67 0.97
42 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (41 bp):
GGTGGATCCACGGTCATCAAGAAACCATGCGATCCTCAATC
Found at i:69960697 original size:27 final size:27
Alignment explanation
Indices: 69960645--69960965 Score: 250
Period size: 27 Copynumber: 11.9 Consensus size: 27
69960635 TTTCACCCTA
* * * * *
69960645 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
69960672 CAAGGGTATTTCGGTAATTTTTCAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * **
69960699 CAATGGTA-TTCATGTAATTTTTGAAAGT
1 CAAGGGTATTTC-GGTAATTTTACAAA-T
** **
69960727 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
** *
69960754 CAAGGGTATTTCTATAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
** *
69960781 CAAGGGTATTTCAATAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
69960808 TAGGGGTATTTCTGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
69960835 CAAGGGTATTTCGATAATTTTACAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* ** **
69960862 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
69960889 CGAGGGTATTTCGGTAATTTCATAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
69960916 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
69960942 CTAGGGGTATTTTGGTAATTTTAC
1 C-AAGGGTATTTCGGTAATTTTAC
69960966 TTACCAAGGG
Statistics
Matches: 246, Mismatches: 44, Indels: 8
0.83 0.15 0.03
Matches are distributed among these distances:
26 3 0.01
27 222 0.90
28 19 0.08
29 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:69960837 original size:81 final size:82
Alignment explanation
Indices: 69960665--69960941 Score: 281
Period size: 81 Copynumber: 3.4 Consensus size: 82
69960655 TTGGTAAATC
* * * * * * **
69960665 TACAAACCAAGGGTATTTCGGTAATTTTTCAAACCAATGGTA-TTCATGTAATTTTTGAAAGTCA
1 TACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCA-ATAATTTTCCAAAGTCA
*
69960729 AGGGTATTTTTGTAATTT
65 AGGGTATTTCTGTAATTT
** * * * *
69960747 TGTAAATCAAGGGTATTTCTATAATTTTCCAAATCAAGGGTATTTCAATAATTTTCCAAA-TTAG
1 TACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAATAATTTTCCAAAGTCAA
69960811 GGGTATTTCTGTAATTT
66 GGGTATTTCTGTAATTT
* * * * *
69960828 TACAAATCAAGGGTATTTCGATAATTTTACAAGTCGAGGGTATTTCAATAATTTTAC-AGGTCGA
1 TACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAATAATTTTCCAAAGTCAA
*
69960892 GGGTATTTCGGTAATTT
66 GGGTATTTCTGTAATTT
* * * * * *
69960909 CATAAATTAGGGGTATTTTGGTAATTTTACAAA
1 TACAAATCAAGGGTATTTCGATAATTTTACAAA
69960942 CTAGGGGTAT
Statistics
Matches: 160, Mismatches: 33, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
80 1 0.01
81 111 0.69
82 44 0.28
83 4 0.03
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (82 bp):
TACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAATAATTTTCCAAAGTCAA
GGGTATTTCTGTAATTT
Found at i:69960986 original size:27 final size:27
Alignment explanation
Indices: 69960970--69961052 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 27
69960960 TTTTACTTAC
69960970 CAAGGGCATTCCAGTAATTCTACCCTA
1 CAAGGGCATTCCAGTAATTCTACCCTA
* *
69960997 CAGGGGCATTCCAGTAATTCTATCCTA
1 CAAGGGCATTCCAGTAATTCTACCCTA
* * * * *
69961024 TAGGGGCATTTCAGTAATACTAGCCTA
1 CAAGGGCATTCCAGTAATTCTACCCTA
69961051 CA
1 CA
69961053 GATATGAGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (27 bp):
CAAGGGCATTCCAGTAATTCTACCCTA
Found at i:69977870 original size:43 final size:42
Alignment explanation
Indices: 69977823--69977964 Score: 162
Period size: 43 Copynumber: 3.3 Consensus size: 42
69977813 TCCTAGACAT
69977823 GGTCTTACATGTAATCAAATATCGATGCCACATTCCCAAACAA
1 GGTCTTACATGTAATCAAATA-CGATGCCACATTCCCAAACAA
* *
69977866 GGTCTTACACGTAATCAAATACCGATGCCAC-TATCCCAGACAA
1 GGTCTTACATGTAATCAAATA-CGATGCCACAT-TCCCAAACAA
* * * **
69977909 GGTTTTACATGAAATCAAATACGATGCCA-ACGTCCCAAACGT
1 GGTCTTACATGTAATCAAATACGATGCCACA-TTCCCAAACAA
*
69977951 GGTCTTACAGGTAA
1 GGTCTTACATGTAA
69977965 ATTATAAGTC
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
42 27 0.33
43 56 0.67
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.24
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACGATGCCACATTCCCAAACAA
Found at i:69977989 original size:86 final size:85
Alignment explanation
Indices: 69977804--69978003 Score: 201
Period size: 86 Copynumber: 2.3 Consensus size: 85
69977794 AGCTCGTACA
* * * * *
69977804 ATGCCAATGTCCTAGACATGGTCTTACATGTAATCAAATATCGATGCCACATTCCCAAACAAGGT
1 ATGCCAACGTCCCAGACAAGGTCTTACATGAAATCAAATATCGATGCCACAGTCCCAAACAAGGT
69977869 CTTACACGTAATCAAATACCG
66 CTTACACGTAATCAAATA-CG
* * **
69977890 ATGCC-ACTATCCCAGACAAGGTTTTACATGAAATCAAATA-CGATGCCA-ACGTCCCAAACGTG
1 ATGCCAAC-GTCCCAGACAAGGTCTTACATGAAATCAAATATCGATGCCACA-GTCCCAAACAAG
* *
69977952 GTCTTACAGGTAAATTATAAGT-CG
64 GTCTTACACGT-AATCA-AA-TACG
**
69977976 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACAAGGTCTTACA
69978004 CAAAAACACA
Statistics
Matches: 93, Mismatches: 15, Indels: 12
0.77 0.12 0.10
Matches are distributed among these distances:
84 1 0.01
85 28 0.30
86 59 0.63
87 4 0.04
88 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.24
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACAAGGTCTTACATGAAATCAAATATCGATGCCACAGTCCCAAACAAGGT
CTTACACGTAATCAAATACG
Found at i:69979171 original size:13 final size:13
Alignment explanation
Indices: 69979153--69979178 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69979143 CACAAACGAT
69979153 AAAATTTTCACAC
1 AAAATTTTCACAC
69979166 AAAATTTTCACAC
1 AAAATTTTCACAC
69979179 GTATCATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:69980199 original size:17 final size:18
Alignment explanation
Indices: 69980157--69980205 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
69980147 AGTTGAAAAG
69980157 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
69980176 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
69980193 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
69980206 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:69981094 original size:40 final size:40
Alignment explanation
Indices: 69981028--69981178 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
69981018 AAATTGAATG
* * *
69981028 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
69981067 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
69981107 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
69981147 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
69981179 ACTTGATTAT
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
39 16 0.17
40 77 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69981192 original size:40 final size:40
Alignment explanation
Indices: 69981064--69981194 Score: 167
Period size: 40 Copynumber: 3.3 Consensus size: 40
69981054 TATGCTGGAA
* * * *
69981064 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
* *
69981104 GTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
69981144 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
69981184 ATTATATCCGG
1 ATTATATCCGG
69981195 TTATATTCCG
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:69986998 original size:40 final size:40
Alignment explanation
Indices: 69986952--69987118 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
69986942 CGGAATACAA
*
69986952 CCGGATATAACCACGT-GCTCGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * * * *
69986992 TCGGATAGATCGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
69987032 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
* ** * *
69987072 CCGGATATAATTC-C-AGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CCACTAGCACGAATGCCTTCGGGTCTTAGC
69987111 CCGGATAT
1 CCGGATAT
69987119 CATTCAATTG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 29 0.28
40 74 0.71
41 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:69994959 original size:40 final size:40
Alignment explanation
Indices: 69994900--69995106 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
69994890 CAATTGAATG
* * * *
69994900 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
69994940 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* **
69994980 A-ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
69995019 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
69995059 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
69995099 ATATCCGG
1 ATATCCGG
69995107 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.23
40 110 0.77
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:69994998 original size:79 final size:80
Alignment explanation
Indices: 69994901--69995091 Score: 233
Period size: 79 Copynumber: 2.4 Consensus size: 80
69994891 AATTGAATGA
* * * * * *
69994901 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCAA
*
69994966 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* ** *
69994979 TAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCA
1 T-ATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCA
* *
69995044 TTTGTGCAAGTCGTTC
65 ATTGTGCAAGTCGTAC
*
69995060 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 TATCCGGGCTAAGACCCGAAGGCATTCATGCA
69995092 TGTGGTTATA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 62 0.64
80 32 0.33
81 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCATGCAAGTAATTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:69996711 original size:40 final size:40
Alignment explanation
Indices: 69996634--69996814 Score: 163
Period size: 40 Copynumber: 4.5 Consensus size: 40
69996624 GAATCACGTA
* * * * *
69996634 CCTTCGGGATTTA-ACCGGATATAGCAACTCGCTCAATTG
1 CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAATTG
* * *
69996673 TCTTCGGGACA-TAGCCCGG-TTATAGTGATTCGCACAATTG
1 CCTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCACAATTG
* *
69996713 CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATA
1 CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAATTG
* * **
69996753 CCTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAG
1 CCTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACAATTG
*
69996794 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGAATTAGCCCGGAT
69996815 ACCATTCGAA
Statistics
Matches: 116, Mismatches: 18, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
39 13 0.11
40 74 0.64
41 28 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAATTG
Found at i:69996771 original size:80 final size:81
Alignment explanation
Indices: 69996634--69996815 Score: 192
Period size: 80 Copynumber: 2.3 Consensus size: 81
69996624 GAATCACGTA
* * * * **
69996634 CCTTCGGGATTTA-ACCGGATATAGCAACTCGCTCAATTGTCTTCGGGACATAGCCCGG-TTATA
1 CCTTCGGGAATTAGCCCGGATATAGCAACTCGCACAAATACCTTCGGGACATAGCCCGGATT-TA
* * **
69996697 GTGA-TTCGCACAATTG
65 GTCACTTAGCACAAAAG
* * *
69996713 CCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATACCTTCGGGA-ATTGACCCGGATTTA
1 CCTTCGGGAATTAGCCCGGATATAGCAACTCGCACAAATACCTTCGGGACATAG-CCCGGATTTA
69996777 GTCACTTAGCACAAAAG
65 GTCACTTAGCACAAAAG
*
69996794 CCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGAATTAGCCCGGATA
69996816 CCATTCGAAT
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
79 15 0.18
80 38 0.45
81 31 0.37
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (81 bp):
CCTTCGGGAATTAGCCCGGATATAGCAACTCGCACAAATACCTTCGGGACATAGCCCGGATTTAG
TCACTTAGCACAAAAG
Found at i:69997591 original size:40 final size:40
Alignment explanation
Indices: 69997542--69997733 Score: 321
Period size: 40 Copynumber: 4.8 Consensus size: 40
69997532 CCAGCATGAT
* * * *
69997542 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGAACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
69997582 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
69997622 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
69997662 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
69997702 TGCTCCTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
69997734 CTCAATTCTC
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:70000522 original size:125 final size:126
Alignment explanation
Indices: 70000295--70000875 Score: 674
Period size: 125 Copynumber: 4.6 Consensus size: 126
70000285 GGCTGTCACA
* * *
70000295 AGAACCATCTTCTCAAAATTA-TTTTTCAGAAACTACT-ATAGAAAAAGAGTGTTCAGGTGGGAG
1 AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTGA-AGAAAAAGTGCGTCCAGGTGGGAG
* * * * *
70000358 CTTTTTTCAGTACTTTTGTTGACAGTGCATCATGTTTGAAGCGTTTTTGACCTTATCTTTTC
65 CTTTTTTCAGTACTTTTGTTGACAGTGCATCTTGCTTGAAGCGTTTTTTACCCTATTTTTTC
*
70000420 AGAACCATCTTCTCAAAATTA-TTTTTCAGAAACTATTGAAGAAAAAGTGCGTCCAGGTGGGAGC
1 AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTGAAGAAAAAGTGCGTCCAGGTGGGAGC
* * * * *
70000484 TTTTTTCAATACTTTTGCTAACAGTGCATCTTGCTTGAAGCG-TTTTTACCATATTTTTTT
66 TTTTTTCAGTACTTTTGTTGACAGTGCATCTTGCTTGAAGCGTTTTTTACCCTATTTTTTC
* * * * * * *
70000544 AGAACCATATTCTCAAAATTATTTTTTCAGAAACTATTGTAGAAAAAGAGTGTCTAAGTGGGAGC
1 AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTGAAGAAAAAGTGCGTCCAGGTGGGAGC
* * * *
70000609 TTTTTTCAGTACTTTTATTGACAGTGTATCCTGCTTGAAGCATTTTTTACCCTATTTTTTC
66 TTTTTTCAGTACTTTTGTTGACAGTGCATCTTGCTTGAAGCGTTTTTTACCCTATTTTTTC
* * * * * * * * * *
70000670 AAAATCATCTTTTCAAAATTATTTTTTCA-AAACTACAGTAGAAAAATTGCATTCTGTTGGGAGC
1 AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTGAAGAAAAAGTGCGTCCAGGTGGGAGC
* * * *
70000734 TTTTTTCAGAACTTTTGTTGATAGTGCAT-TCTGTTTGAAGCGTTTTTTACCCTATTTTGTC
66 TTTTTTCAGTACTTTTGTTGACAGTGCATCT-TGCTTGAAGCGTTTTTTACCCTATTTTTTC
* * * *
70000795 AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTAGT-ATAGAAAAA-TAGAGTCCAGCTAGGA
1 AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTGA-AGAAAAAGT-GCGTCCAGGTGGGA
*
70000858 GCTTATTTCAGTACTTTT
64 GCTTTTTTCAGTACTTTT
70000876 TTTAACTGAA
Statistics
Matches: 384, Mismatches: 65, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
124 34 0.09
125 271 0.71
126 79 0.21
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (126 bp):
AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTGAAGAAAAAGTGCGTCCAGGTGGGAGC
TTTTTTCAGTACTTTTGTTGACAGTGCATCTTGCTTGAAGCGTTTTTTACCCTATTTTTTC
Found at i:70000682 original size:14 final size:14
Alignment explanation
Indices: 70000665--70000701 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
70000655 TTACCCTATT
70000665 TTTTCAAAATCATC
1 TTTTCAAAATCATC
* *
70000679 TTTTCAAAATTATT
1 TTTTCAAAATCATC
70000693 TTTTCAAAA
1 TTTTCAAAA
70000702 CTACAGTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.49
Consensus pattern (14 bp):
TTTTCAAAATCATC
Found at i:70000762 original size:250 final size:251
Alignment explanation
Indices: 70000295--70000875 Score: 744
Period size: 250 Copynumber: 2.3 Consensus size: 251
70000285 GGCTGTCACA
*
70000295 AGAACCATCTTCTCAAAATTA-TTTTTCAGAAACTACTATAGAAAAAGAGTGT-TCAGGTGGGAG
1 AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTATAGAAAAAGAGTGTCT-AAGTGGGAG
* * * * *
70000358 CTTTTTTCAGTACTTTTGTTGACAGTGCATCATGTTTGAAGCGTTTTTGACCTTATCTTTTCAGA
65 CTTTTTTCAGTACTTTTATTGACAGTGCATCATGCTTGAAGCATTTTTGACCCTATCTTTTCAAA
** *
70000423 ACCATCTTCTCAAAATTATTTTTCAGAAACTATTGAAGAAAAAGTGCGTCCAGGTGGGAGCTTTT
130 ACCATCTTCTCAAAATTATTTTTCAGAAACTACAGAAGAAAAAGTGCATCCAGGTGGGAGCTTTT
* *
70000488 TTCAATACTTTTGCTAACAGTGCA-TCTTGCTTGAAGCG-TTTTTACCATATTTTTTT
195 TTCAATACTTTTGCTAACAGTGCATTC-TGCTTGAAGCGTTTTTTACCATATTTTGTC
* * *
70000544 AGAACCATATTCTCAAAATTATTTTTTCAGAAACTATTGTAGAAAAAGAGTGTCTAAGTGGGAGC
1 AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTATAGAAAAAGAGTGTCTAAGTGGGAGC
* * * *
70000609 TTTTTTCAGTACTTTTATTGACAGTGTATCCTGCTTGAAGCATTTTTTACCCTATTTTTTCAAAA
66 TTTTTTCAGTACTTTTATTGACAGTGCATCATGCTTGAAGCATTTTTGACCCTATCTTTTCAAAA
* * * * * * *
70000674 TCATCTTTTCAAAATTATTTTTTCA-AAACTACAGTAGAAAAATTGCATTCTGTTGGGAGCTTTT
131 CCATCTTCTCAAAATTA-TTTTTCAGAAACTACAGAAGAAAAAGTGCATCCAGGTGGGAGCTTTT
* * * * *
70000738 TTCAGA-ACTTTTGTTGATAGTGCATTCTGTTTGAAGCGTTTTTTACCCTATTTTGTC
195 TTCA-ATACTTTTGCTAACAGTGCATTCTGCTTGAAGCGTTTTTTACCATATTTTGTC
* * * * *
70000795 AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTAGTATAGAAAAATAGAGTC-CAGCTAGGAG
1 AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTATAGAAAAAGAGTGTCTAAG-TGGGAG
*
70000859 CTTATTTCAGTACTTTT
65 CTTTTTTCAGTACTTTT
70000876 TTTAACTGAA
Statistics
Matches: 287, Mismatches: 38, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
249 20 0.07
250 171 0.60
251 96 0.33
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (251 bp):
AGAACCATCTTCTCAAAATTATTTTTTCAGAAACTACTATAGAAAAAGAGTGTCTAAGTGGGAGC
TTTTTTCAGTACTTTTATTGACAGTGCATCATGCTTGAAGCATTTTTGACCCTATCTTTTCAAAA
CCATCTTCTCAAAATTATTTTTCAGAAACTACAGAAGAAAAAGTGCATCCAGGTGGGAGCTTTTT
TCAATACTTTTGCTAACAGTGCATTCTGCTTGAAGCGTTTTTTACCATATTTTGTC
Found at i:70001039 original size:30 final size:30
Alignment explanation
Indices: 70001003--70001090 Score: 149
Period size: 30 Copynumber: 2.8 Consensus size: 30
70000993 ACCTTAAATT
70001003 TTTTTTAAAAATAAACCCTAATTTAATTTA
1 TTTTTTAAAAATAAACCCTAATTTAATTTA
70001033 TTTTTTAAAAATAAACCCTAATTTAATTTA
1 TTTTTTAAAAATAAACCCTAATTTAATTTA
70001063 TTTTTTAAAAATCATAAACCCTAATTTA
1 TTTTTT-AAAA--ATAAACCCTAATTTA
70001091 TTTCTCCTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
30 36 0.65
31 4 0.07
33 15 0.27
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.45
Consensus pattern (30 bp):
TTTTTTAAAAATAAACCCTAATTTAATTTA
Found at i:70001110 original size:7 final size:7
Alignment explanation
Indices: 70001098--70001123 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
70001088 TTATTTCTCC
70001098 TAAACCA
1 TAAACCA
70001105 TAAACCA
1 TAAACCA
70001112 TAAACCA
1 TAAACCA
70001119 TAAAC
1 TAAAC
70001124 AAATAAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.27, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCA
Found at i:70003100 original size:3 final size:3
Alignment explanation
Indices: 70003092--70003129 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
70003082 TTAAATGAAT
70003092 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
70003130 TGCATGTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:70004317 original size:38 final size:38
Alignment explanation
Indices: 70004237--70004318 Score: 101
Period size: 38 Copynumber: 2.2 Consensus size: 38
70004227 TTTAGTTATT
* * ** *
70004237 ATTTAAATGAGTTTTAGATAAATAACAAATATATTATT
1 ATTTAAAAGAGTTTTAGATAAATAACAAATAAAACATA
* *
70004275 ATTTAAAAGAGTTTTAGATAAATAATAATTAAAACATA
1 ATTTAAAAGAGTTTTAGATAAATAACAAATAAAACATA
70004313 ATTTAA
1 ATTTAA
70004319 TTATTATTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.39
Consensus pattern (38 bp):
ATTTAAAAGAGTTTTAGATAAATAACAAATAAAACATA
Found at i:70004328 original size:52 final size:50
Alignment explanation
Indices: 70004267--70004390 Score: 171
Period size: 52 Copynumber: 2.5 Consensus size: 50
70004257 AATAACAAAT
* * *
70004267 ATATTATTATTTAAAAGAGTTTTAGATAAATA-ATAATTAAAACATAATTTA
1 ATATTATTATTTAAAAGAGTTTTAAATAAA-AGAAAATT-AAACAGAATTTA
*
70004318 ATTATTATTATTTAAAAGAGTTTTAAATAAAAGAAAATTAAATAGAATTTA
1 A-TATTATTATTTAAAAGAGTTTTAAATAAAAGAAAATTAAACAGAATTTA
70004369 A-ATTATTATTTAAAAGAGTTTT
1 ATATTATTATTTAAAAGAGTTTT
70004391 TAAAATTCAA
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
49 21 0.31
51 13 0.19
52 33 0.49
ACGTcount: A:0.50, C:0.01, G:0.07, T:0.42
Consensus pattern (50 bp):
ATATTATTATTTAAAAGAGTTTTAAATAAAAGAAAATTAAACAGAATTTA
Found at i:70005312 original size:29 final size:29
Alignment explanation
Indices: 70005280--70005336 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
70005270 CGTTTATTTT
*
70005280 AATGCATATATATGATA-CTATGAGTATGG
1 AATGC-TATAGATGATATCTATGAGTATGG
* *
70005309 AATGCTTTAGATGATATCTATTAGTATG
1 AATGCTATAGATGATATCTATGAGTATG
70005337 TGATACTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.35, C:0.07, G:0.19, T:0.39
Consensus pattern (29 bp):
AATGCTATAGATGATATCTATGAGTATGG
Found at i:70011293 original size:30 final size:30
Alignment explanation
Indices: 70011257--70011316 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70011247 TTCCCGAGCC
*
70011257 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
70011287 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
70011317 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:70017027 original size:46 final size:46
Alignment explanation
Indices: 70016959--70017141 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
70016949 TATATATACA
* * * * *
70016959 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGACTTTACCACATATC
* *
70017005 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGACTTTACCACATATC
* * * *
70017051 CATCTCATACACGTTTCGCATTAGTCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGACTTTACCACATATC
70017097 CATCTCATACACATTTCGCATTAGCCATTCGACTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGACTTTACCACATAT
70017142 ATACACTTCC
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 124 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGACTTTACCACATATC
Found at i:70017189 original size:47 final size:47
Alignment explanation
Indices: 70017115--70017488 Score: 556
Period size: 47 Copynumber: 8.0 Consensus size: 47
70017105 ACACATTTCG
* * * * * * *
70017115 CATTAGCCATTCGACTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
70017162 CATTGGCCATTCTGCCTTATCATATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
70017209 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
70017256 CATTGGCCATTC-GCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
70017302 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
70017349 CATTGGCCATTCGGCCTTATCACA-ATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
70017395 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
70017442 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
70017489 TATAAAATCC
Statistics
Matches: 305, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 90 0.30
47 215 0.70
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:70017301 original size:140 final size:140
Alignment explanation
Indices: 70017155--70017488 Score: 546
Period size: 140 Copynumber: 2.4 Consensus size: 140
70017145 CACTTCCACG
*
70017155 TTCATCACATTGGCCATTCTGCCTTATCATATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCATATATATGCATGTTCACATTCATCACATTGGCCATT
70017220 CGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTC-GCCTTATCACACATAT
66 CGGCCTTATCACA-ATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
70017284 GCATGTTCACA
130 GCATGTTCACA
* *
70017295 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCATATATATGCATGTTCACATTCATCACATTGGCCATT
* * *
70017360 CGGCCTTATCACAATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATG
66 CGGCCTTATCACAATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATG
70017425 CATGTTCACA
131 CATGTTCACA
* * **
70017435 TTCATCACATTTGCCATTCGGCCTTATC-TCATATATACACATTCACATTCATCA
1 TTCATCACATTGGCCATTCGGCCTTATCAT-ATATATGCATGTTCACATTCATCA
70017489 TATAAAATCC
Statistics
Matches: 180, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
139 33 0.18
140 147 0.82
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (140 bp):
TTCATCACATTGGCCATTCGGCCTTATCATATATATGCATGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACAATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATG
CATGTTCACA
Found at i:70017306 original size:93 final size:94
Alignment explanation
Indices: 70017115--70017488 Score: 556
Period size: 93 Copynumber: 4.0 Consensus size: 94
70017105 ACACATTTCG
* * * * * * * *
70017115 CATTAGCCATTCGACTTTACCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTGCCT
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCT
*
70017179 TATCATATATATGCATGTTCACATTCATCA
65 TATCACATATATGCATGTTCACATTCATCA
*
70017209 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTC-GCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
70017273 ATCACACATATGCATGTTCACATTCATCA
66 ATCACATATATGCATGTTCACATTCATCA
*
70017302 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
70017367 ATCACA-ATATGCATGTTCACATTCATCA
66 ATCACATATATGCATGTTCACATTCATCA
* *
70017395 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTTGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * **
70017460 ATCTCATATATACACATTCACATTCATCA
66 ATCACATATATGCATGTTCACATTCATCA
70017489 TATAAAATCC
Statistics
Matches: 259, Mismatches: 18, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
93 179 0.69
94 80 0.31
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.34
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATATGCATGTTCACATTCATCA
Found at i:70022252 original size:30 final size:30
Alignment explanation
Indices: 70022212--70022271 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
70022202 TTCCCGAGCC
* *
70022212 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGACAAAAATGTAATTATGCAAAAGTT
* *
70022242 TAGGGACAAAAATGTAATTTTGCCAAAGTT
1 TAGGGACAAAAATGTAATTATGCAAAAGTT
70022272 CTTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGACAAAAATGTAATTATGCAAAAGTT
Found at i:70024169 original size:17 final size:17
Alignment explanation
Indices: 70024147--70024179 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
70024137 CATTAACATT
70024147 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
70024164 AAAATGCAATGACAAT
1 AAAATGCAATGACAAT
70024180 GTGCAGTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:70027242 original size:29 final size:29
Alignment explanation
Indices: 70027209--70027266 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
70027199 GAGTAAATTT
70027209 GTAATAAATTGCTTGGGACAGTAGCAGTA
1 GTAATAAATTGCTTGGGACAGTAGCAGTA
70027238 GTAATAAATTGCTTGGGACAGTAGCAGTA
1 GTAATAAATTGCTTGGGACAGTAGCAGTA
70027267 ACGTGATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (29 bp):
GTAATAAATTGCTTGGGACAGTAGCAGTA
Found at i:70031611 original size:27 final size:27
Alignment explanation
Indices: 70031571--70031711 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
70031561 AGGAAGCGTC
*
70031571 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
70031598 CTGGTGGCTCTGCCAC-ATATATCT-AT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
70031624 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
70031652 CTGGTGGCTCTACCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
70031679 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
70031706 CTGGTG
1 CTGGTG
70031712 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 7, Indels: 14
0.83 0.06 0.12
Matches are distributed among these distances:
26 12 0.12
27 83 0.83
28 5 0.05
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:70031651 original size:54 final size:54
Alignment explanation
Indices: 70031569--70031711 Score: 234
Period size: 54 Copynumber: 2.6 Consensus size: 54
70031559 GGAGGAAGCG
*
70031569 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTA
*
70031623 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTA
* *
70031677 TTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 TCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
70031712 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTA
Found at i:70031722 original size:27 final size:26
Alignment explanation
Indices: 70031571--70031729 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
70031561 AGGAAGCGTC
* * *
70031571 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* * *
70031598 CTGGTGGCTCTGCCACATATATCTATC
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * *
70031625 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
70031652 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
70031679 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
70031706 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
70031730 GCAGCCTCGT
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
26 10 0.09
27 101 0.89
28 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:70031723 original size:81 final size:80
Alignment explanation
Indices: 70031571--70031729 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 80
70031561 AGGAAGCGTC
* *
70031571 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATCCTGGTGGCTAT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATCCTGGTGACTAT
70031636 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* *
70031652 CTGGTGGCTCTACCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTAT-CTGGTGAC
1 CTGGTGGCTATACCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATC--TATCCTGGTGAC
*
70031714 T-TCGTCACAATATCTG
63 TAT-GCCACAATATCTG
70031730 GCAGCCTCGT
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
80 14 0.20
81 52 0.75
82 3 0.04
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:70036630 original size:40 final size:40
Alignment explanation
Indices: 70036531--70036635 Score: 102
Period size: 40 Copynumber: 2.6 Consensus size: 40
70036521 GGGCTTCAAG
* * * * *
70036531 CCTAGCAGGCGAAATGTCGGTGAATGAGTTTAGACTTAAAG
1 CCTAGCAGGCTAAATGCCGGTG-ATGAATTCAGACTTAAAA
* *** **
70036572 TCTAGCAGGCTTCGTGCCGGTGATGAATTCAGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
70036612 CCTAGCAGGCTAAATGCCGGTGAT
1 CCTAGCAGGCTAAATGCCGGTGAT
70036636 TTGATAAAAG
Statistics
Matches: 49, Mismatches: 15, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
40 33 0.67
41 16 0.33
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (40 bp):
CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
Found at i:70040595 original size:20 final size:20
Alignment explanation
Indices: 70040570--70040611 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
70040560 ACATGCACTT
* * *
70040570 ATAAAATTATATTATAAAAA
1 ATAAAATAATACTAAAAAAA
70040590 ATAAAATAATACTAAAAAAA
1 ATAAAATAATACTAAAAAAA
70040610 AT
1 AT
70040612 TTTCTCCGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAAATAATACTAAAAAAA
Found at i:70045091 original size:27 final size:26
Alignment explanation
Indices: 70045021--70045185 Score: 150
Period size: 27 Copynumber: 6.1 Consensus size: 26
70045011 ACACTATAAA
* * **
70045021 GGTATTTTGGTAATTTCACAAATTGAA
1 GGTATTTTAGTAATTTTACAAA-TGGG
* * * *
70045048 GGTATTTCATTAATTTTACAACCTGAG
1 GGTATTTTAGTAATTTTACAA-ATGGG
* * *
70045075 GGTGTTTTAGTATTTTTTCAAATCGGG
1 GGTATTTTAGTAATTTTACAAAT-GGG
*
70045102 GGTATTTCAGTAATTTTACAAATTGGG
1 GGTATTTTAGTAATTTTACAAA-TGGG
*
70045129 GGTATTTTAGTAATTTTACAAGTCGGG
1 GGTATTTTAGTAATTTTACAAAT-GGG
*
70045156 GGTATTTCAGTAATTTTACAAATCGGG
1 GGTATTTTAGTAATTTTACAAAT-GGG
70045183 GGT
1 GGT
70045186 CTTAATGACC
Statistics
Matches: 113, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
26 2 0.02
27 110 0.97
28 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.41
Consensus pattern (26 bp):
GGTATTTTAGTAATTTTACAAATGGG
Found at i:70045178 original size:54 final size:54
Alignment explanation
Indices: 70045021--70045185 Score: 204
Period size: 54 Copynumber: 3.1 Consensus size: 54
70045011 ACACTATAAA
* * * ** * ** *
70045021 GGTATTTTGGTAATTTCACAAATTGAAGGTATTTCATTAATTTTACAACCTGAG
1 GGTATTTTAGTAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAAATTGGG
* * *
70045075 GGTGTTTTAGTATTTTTTCAAATCGGGGGTATTTCAGTAATTTTACAAATTGGG
1 GGTATTTTAGTAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAAATTGGG
* *
70045129 GGTATTTTAGTAATTTTACAAGTCGGGGGTATTTCAGTAATTTTACAAATCGGG
1 GGTATTTTAGTAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAAATTGGG
70045183 GGT
1 GGT
70045186 CTTAATGACC
Statistics
Matches: 94, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 94 1.00
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.41
Consensus pattern (54 bp):
GGTATTTTAGTAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAAATTGGG
Found at i:70045178 original size:81 final size:81
Alignment explanation
Indices: 70045021--70045185 Score: 197
Period size: 81 Copynumber: 2.0 Consensus size: 81
70045011 ACACTATAAA
** * * *
70045021 GGTATTTTGGTAATTTCACAAATTGAAGGTATTTCATTAATTTTACAACCTGAGGGTGTTTTAGT
1 GGTATTTCAGTAATTTCACAAATTGAAGGTATTTCAGTAATTTTACAACCTGAGGGTATTTCAGT
* *
70045086 ATTTTTTCAAATCGGG
66 AATTTTACAAATCGGG
* ** * * *
70045102 GGTATTTCAGTAATTTTACAAATTGGGGGTATTTTAGTAATTTTACAA-GTCGGGGGTATTTCAG
1 GGTATTTCAGTAATTTCACAAATTGAAGGTATTTCAGTAATTTTACAACCT-GAGGGTATTTCAG
70045166 TAATTTTACAAATCGGG
65 TAATTTTACAAATCGGG
70045183 GGT
1 GGT
70045186 CTTAATGACC
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 69 0.99
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.41
Consensus pattern (81 bp):
GGTATTTCAGTAATTTCACAAATTGAAGGTATTTCAGTAATTTTACAACCTGAGGGTATTTCAGT
AATTTTACAAATCGGG
Found at i:70049250 original size:26 final size:26
Alignment explanation
Indices: 70049185--70049250 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
70049175 AAGTCAGTCA
70049185 TTTACCC-ACAAGGGCAAAACAATCAT
1 TTTACCCTACAA-GGCAAAACAATCAT
* ** * *
70049211 TTTACTCTTTAAGGCAAAACGATTAT
1 TTTACCCTACAAGGCAAAACAATCAT
70049237 TTTACCCTACAAGG
1 TTTACCCTACAAGG
70049251 GTATTTCGGT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
26 29 0.94
27 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (26 bp):
TTTACCCTACAAGGCAAAACAATCAT
Found at i:70049284 original size:26 final size:27
Alignment explanation
Indices: 70049239--70049289 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
70049229 ACGATTATTT
70049239 TACCCTACAAGGGTATTTCGGTAATCC
1 TACCCTACAAGGGTATTTCGGTAATCC
* *
70049266 TACCCTATAGGGGTA-TTCGGTAAT
1 TACCCTACAAGGGTATTTCGGTAAT
70049290 TTCATAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGGTAATCC
Found at i:70049331 original size:27 final size:26
Alignment explanation
Indices: 70049301--70049429 Score: 107
Period size: 27 Copynumber: 4.8 Consensus size: 26
70049291 TCATAAATCG
*
70049301 AGGGTATTTCAGTAATTTTACAACCTA
1 AGGGTATTTCAGTAATTTTACAA-ATA
* *
70049328 AGGGTATTTTAATAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAAT-A
** *
70049355 AGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCAGTAATTTTACAAATA
* * * **
70049381 GGGGGATTTCTGTAATTTTACAAGCCGA
1 AGGGTATTTCAGTAATTTTACAA--ATA
*
70049409 A-GGTATTTAAGTAATTTTACA
1 AGGGTATTTCAGTAATTTTACA
70049430 GATCATGGGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
26 20 0.24
27 62 0.76
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (26 bp):
AGGGTATTTCAGTAATTTTACAAATA
Found at i:70049396 original size:26 final size:27
Alignment explanation
Indices: 70049284--70049403 Score: 84
Period size: 27 Copynumber: 4.5 Consensus size: 27
70049274 AGGGGTATTC
* * * * *
70049284 GGTAATTTCATAAATCGAGGGTATTTC
1 GGTAATTTTACAAATCAAGGGGATTTT
* * *
70049311 AGTAATTTTAC-AACCTAAGGGTATTTT
1 GGTAATTTTACAAATC-AAGGGGATTTT
** *
70049338 AATAATTTTACAAATCAAGGGTATTTT
1 GGTAATTTTACAAATCAAGGGGATTTT
**
70049365 GGTAATTTTACAAAT-TGGGGGATTTCT
1 GGTAATTTTACAAATCAAGGGGATTT-T
70049392 -GTAATTTTACAA
1 GGTAATTTTACAA
70049404 GCCGAAGGTA
Statistics
Matches: 77, Mismatches: 13, Indels: 7
0.79 0.13 0.07
Matches are distributed among these distances:
26 22 0.29
27 52 0.68
28 3 0.04
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACAAATCAAGGGGATTTT
Found at i:70052021 original size:16 final size:17
Alignment explanation
Indices: 70052000--70052032 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
70051990 CACATTAAAG
70052000 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
70052016 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
70052033 CTTCTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:70053643 original size:81 final size:81
Alignment explanation
Indices: 70053487--70053652 Score: 197
Period size: 81 Copynumber: 2.0 Consensus size: 81
70053477 CTACCCTATA
* * * * * *
70053487 GGGGTATTTTAGTAATTTCATAAATCGAGGGTATTTCGATAATTTTATAACCCGGGGCTATTTTA
1 GGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAATAATTTTACAACCCGGGGCTATGTCA
*
70053552 ATAACCTTACAAATTG
66 ATAACCTTACAAATCG
* * * * *
70053568 GGGGTATTTCGGTAATTTTACATATCGAGGGTATTTCAATAATTTTACAAGCCGGGGGTATGTCA
1 GGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAATAATTTTACAACCCGGGGCTATGTCA
* **
70053633 GTAATTTTACAAATCG
66 ATAACCTTACAAATCG
70053649 GGGG
1 GGGG
70053653 GTCTTAATGA
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (81 bp):
GGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCAATAATTTTACAACCCGGGGCTATGTCA
ATAACCTTACAAATCG
Found at i:70053650 original size:27 final size:27
Alignment explanation
Indices: 70053487--70053652 Score: 136
Period size: 27 Copynumber: 6.1 Consensus size: 27
70053477 CTACCCTATA
* * *
70053487 GGGGTATTTTAGTAATTTCATAAATCG
1 GGGGTATTTCAGTAATTTTACAAATCG
* * **
70053514 AGGGTATTTC-GATAATTTTATAACCCG
1 GGGGTATTTCAG-TAATTTTACAAATCG
* * * ** *
70053541 GGGCTATTTTAATAACCTTACAAATTG
1 GGGGTATTTCAGTAATTTTACAAATCG
* *
70053568 GGGGTATTTCGGTAATTTTACATATCG
1 GGGGTATTTCAGTAATTTTACAAATCG
* * **
70053595 AGGGTATTTCAATAATTTTACAAGCCG
1 GGGGTATTTCAGTAATTTTACAAATCG
*
70053622 GGGGTATGTCAGTAATTTTACAAATCG
1 GGGGTATTTCAGTAATTTTACAAATCG
70053649 GGGG
1 GGGG
70053653 GTCTTAATGA
Statistics
Matches: 103, Mismatches: 34, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
26 1 0.01
27 102 0.99
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (27 bp):
GGGGTATTTCAGTAATTTTACAAATCG
Found at i:70056215 original size:23 final size:23
Alignment explanation
Indices: 70056183--70056242 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
70056173 GTTTAAGCCT
*
70056183 CACACACCCGTGTGGAGGCAATG
1 CACACGCCCGTGTGGAGGCAATG
*
70056206 CACATGCCCGTGTGGAGGCAATG
1 CACACGCCCGTGTGGAGGCAATG
* *
70056229 TACACGCCAGTGTG
1 CACACGCCCGTGTG
70056243 CATTGAGACA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.23, C:0.28, G:0.32, T:0.17
Consensus pattern (23 bp):
CACACGCCCGTGTGGAGGCAATG
Found at i:70058812 original size:24 final size:24
Alignment explanation
Indices: 70058781--70059113 Score: 234
Period size: 24 Copynumber: 13.9 Consensus size: 24
70058771 GAAATGACTT
*
70058781 TGGCACTATGTGTGCTAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* *
70058805 TGGTACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* *
70058829 TGGCACTATGTTTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
70058853 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
*
70058878 -GGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* **
70058901 TGGCACTATATGTGCGGGTTT-ATA
1 TGGCACTATGTGTGCGAATTTGA-A
*
70058925 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
70058949 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
* *
70058974 -GGCACTATGTGTGCAAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* *
70058997 TGGCACTATATGTGCGGATTT-ATA
1 TGGCACTATGTGTGCGAATTTGA-A
*
70059021 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * * *
70059045 TGTCAATATGTATGTGAATTACT-AA
1 TGGCACTATGTGTGCGAATT--TGAA
* ** *
70059070 -GGCACTATGTGTGTG-GGTTAACA
1 TGGCACTATGTGTGCGAATTTGA-A
*
70059093 TGGCACTATGGGTGCGAATTT
1 TGGCACTATGTGTGCGAATTT
70059114 CCTTGCTTGA
Statistics
Matches: 238, Mismatches: 53, Indels: 35
0.73 0.16 0.11
Matches are distributed among these distances:
21 1 0.00
22 3 0.01
23 4 0.02
24 217 0.91
25 10 0.04
26 3 0.01
ACGTcount: A:0.25, C:0.11, G:0.27, T:0.37
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:70058837 original size:48 final size:48
Alignment explanation
Indices: 70058781--70059082 Score: 295
Period size: 48 Copynumber: 6.3 Consensus size: 48
70058771 GAAATGACTT
* * * **
70058781 TGGCACTATGTGTGCTAATTTGAATGGT-ACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAAT-GTCAATATGTATGCGAATTACTA
* * *
70058829 TGGCACTATGTTTGCGGATTTGAATGTCAATATGTATGTGAATTACTA
1 TGGCACTATGTGTGCGAATTTGAATGTCAATATGTATGCGAATTACTA
* * * * * * **
70058877 AGGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCGGGTTTA-TA
1 TGGCACTATGTGTGCGAATTTGAATGTCAATATGTATGC-GAATTACTA
* *
70058925 TGGCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGAATTACTA
1 TGGCACTATGTGTGCGAATTTGAATGTCAATATGTATGCGAATTACTA
* * * * * * * *
70058973 AGGCACTATGTGTGCAAATTTGTATGGCACTATATGTGCGGATTTA-TA
1 TGGCACTATGTGTGCGAATTTGAATGTCAATATGTATGC-GAATTACTA
* *
70059021 TGGCACTATGTGTGCGGATTTGAATGTCAATATGTATGTGAATTACTA
1 TGGCACTATGTGTGCGAATTTGAATGTCAATATGTATGCGAATTACTA
*
70059069 AGGCACTATGTGTG
1 TGGCACTATGTGTG
70059083 TGGGTTAACA
Statistics
Matches: 199, Mismatches: 50, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
47 11 0.06
48 179 0.90
49 9 0.05
ACGTcount: A:0.25, C:0.11, G:0.26, T:0.37
Consensus pattern (48 bp):
TGGCACTATGTGTGCGAATTTGAATGTCAATATGTATGCGAATTACTA
Found at i:70059101 original size:96 final size:96
Alignment explanation
Indices: 70058782--70059082 Score: 521
Period size: 96 Copynumber: 3.1 Consensus size: 96
70058772 AAATGACTTT
* * * * * * *
70058782 GGCACTATGTGTGCTAATTTGAATGGTACTATGTGTGCGAATTTGTATGGCACTATGTTTGCGGA
1 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCGGATTTATATGGCACTATGTGTGCGGA
70058847 TTTGAATGTCAATATGTATGTGAATTACTAA
66 TTTGAATGTCAATATGTATGTGAATTACTAA
*
70058878 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCGGGTTTATATGGCACTATGTGTGCGGA
1 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCGGATTTATATGGCACTATGTGTGCGGA
70058943 TTTGAATGTCAATATGTATGTGAATTACTAA
66 TTTGAATGTCAATATGTATGTGAATTACTAA
*
70058974 GGCACTATGTGTGCAAATTTGTATGGCACTATATGTGCGGATTTATATGGCACTATGTGTGCGGA
1 GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCGGATTTATATGGCACTATGTGTGCGGA
70059039 TTTGAATGTCAATATGTATGTGAATTACTAA
66 TTTGAATGTCAATATGTATGTGAATTACTAA
70059070 GGCACTATGTGTG
1 GGCACTATGTGTG
70059083 TGGGTTAACA
Statistics
Matches: 195, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 195 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (96 bp):
GGCACTATGTGTGCGAATTTGTATGGCACTATATGTGCGGATTTATATGGCACTATGTGTGCGGA
TTTGAATGTCAATATGTATGTGAATTACTAA
Found at i:70064481 original size:20 final size:21
Alignment explanation
Indices: 70064456--70064494 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
70064446 TGTGGATGCA
70064456 TCTGTTG-TGCTGATTGTAGT
1 TCTGTTGTTGCTGATTGTAGT
*
70064476 TCTGTTGTTGTTGATTGTA
1 TCTGTTGTTGCTGATTGTA
70064495 ATTCCCTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.10, C:0.08, G:0.28, T:0.54
Consensus pattern (21 bp):
TCTGTTGTTGCTGATTGTAGT
Found at i:70067845 original size:66 final size:65
Alignment explanation
Indices: 70067750--70067873 Score: 203
Period size: 66 Copynumber: 1.9 Consensus size: 65
70067740 AAATTACATT
70067750 AATTCATTATATCAACTTCTTATTCAGTTTAATAGCATTTCCTGCTATTTAGTATATTAGCAGTA
1 AATTCATTATATCAACTTCTTATTCAGTTTAATAGCATTTCCTGCTATTTAGTATATTAGCAGTA
* * * *
70067815 AATTACATTATATCCACTTTTTATTTAGTTTAATAGTATTTCCTGCTATTTAGTATATT
1 AATT-CATTATATCAACTTCTTATTCAGTTTAATAGCATTTCCTGCTATTTAGTATATT
70067874 TAATAGGATT
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
65 4 0.07
66 50 0.93
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.48
Consensus pattern (65 bp):
AATTCATTATATCAACTTCTTATTCAGTTTAATAGCATTTCCTGCTATTTAGTATATTAGCAGTA
Found at i:70067980 original size:33 final size:29
Alignment explanation
Indices: 70067909--70067967 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
70067899 ATTTCTTACC
70067909 AATTTTTTATCCCTATGGGGACGATACTT
1 AATTTTTTATCCCTATGGGGACGATACTT
70067938 AATTTTTTATCCCTATGGGGACGATACTT
1 AATTTTTTATCCCTATGGGGACGATACTT
70067967 A
1 A
70067968 CTTATCACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (29 bp):
AATTTTTTATCCCTATGGGGACGATACTT
Found at i:70068389 original size:23 final size:23
Alignment explanation
Indices: 70068362--70068409 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
70068352 AATTTCAAGG
70068362 TCTATAGGGAGTAAACTGATGAT
1 TCTATAGGGAGTAAACTGATGAT
*
70068385 TCTATAGGGAGTAAATTGATGAT
1 TCTATAGGGAGTAAACTGATGAT
70068408 TC
1 TC
70068410 GATTTATGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.33
Consensus pattern (23 bp):
TCTATAGGGAGTAAACTGATGAT
Found at i:70077733 original size:29 final size:30
Alignment explanation
Indices: 70077667--70077758 Score: 104
Period size: 29 Copynumber: 3.2 Consensus size: 30
70077657 AAGTCTACAT
* *
70077667 ACATGCATATGGCCCA-CTAGGCCC-AATC
1 ACATTCATATAGCCCATCTAGGCCCAAATC
* *
70077695 TCATTCATATAGCCC-TTTAGGCCCAAATC
1 ACATTCATATAGCCCATCTAGGCCCAAATC
*
70077724 ACATTCATATGGCCCATCT-GGCCCAAATC
1 ACATTCATATAGCCCATCTAGGCCCAAATC
70077753 A-ATTCA
1 ACATTCA
70077759 AGCCATGTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
28 24 0.44
29 28 0.52
30 2 0.04
ACGTcount: A:0.29, C:0.33, G:0.13, T:0.25
Consensus pattern (30 bp):
ACATTCATATAGCCCATCTAGGCCCAAATC
Found at i:70079682 original size:34 final size:33
Alignment explanation
Indices: 70079636--70079715 Score: 106
Period size: 34 Copynumber: 2.4 Consensus size: 33
70079626 TTGTGTGCAT
* * *
70079636 ACTGTACAGAAATGGGCTAAGGCCCAGACTGCC
1 ACTGTACTGAAATAGGCTAAGGCCCAAACTGCC
*
70079669 ACTGTTACTGAAATAGGCTAAGGCCCAAACTGCT
1 ACTG-TACTGAAATAGGCTAAGGCCCAAACTGCC
70079703 ACTGCTACTGAAA
1 ACTG-TACTGAAA
70079716 GAAGGGTTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 4 0.10
34 37 0.90
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.20
Consensus pattern (33 bp):
ACTGTACTGAAATAGGCTAAGGCCCAAACTGCC
Found at i:70082701 original size:2 final size:2
Alignment explanation
Indices: 70082694--70082730 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
70082684 CATAAGTAAA
70082694 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
70082731 TATATATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:70086346 original size:40 final size:40
Alignment explanation
Indices: 70086298--70086489 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
70086288 ATAACAACTC
*
70086298 GCACAAATGCTTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
70086338 GCATAAATGCCTTCGGGTCTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
*
70086378 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTA
* *
70086418 GCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
70086458 GCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
70086490 CATTCGAATA
Statistics
Matches: 137, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
Found at i:70086385 original size:80 final size:80
Alignment explanation
Indices: 70086269--70086489 Score: 297
Period size: 80 Copynumber: 2.8 Consensus size: 80
70086259 ACCCAAGTAT
* * *
70086269 CTTCGAGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGCTTTCGGGTCTTAGCCCGGATATA
1 CTTCG-GATCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
*
70086331 GTC-ACTAGCATAAATGC
64 G-CAACTAGCACAAATGC
* *
70086348 CTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
*
70086413 AACTCGCACAAATGC
66 AACTAGCACAAATGC
* * *
70086428 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
70086490 CATTCGAATA
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
78 2 0.02
79 10 0.08
80 113 0.90
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
AACTAGCACAAATGC
Found at i:70098338 original size:79 final size:81
Alignment explanation
Indices: 70098202--70098384 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
70098192 TCGAATGATG
* *
70098202 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
70098266 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
70098281 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
70098343 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
70098361 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70098385 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:70098400 original size:40 final size:41
Alignment explanation
Indices: 70098202--70098386 Score: 231
Period size: 40 Copynumber: 4.6 Consensus size: 41
70098192 TCGAATGATG
* * *
70098202 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
70098242 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70098282 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70098321 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70098362 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70098387 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 35 0.28
40 82 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70098408 original size:79 final size:79
Alignment explanation
Indices: 70098255--70098419 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
70098245 GGACTAAGAT
* **
70098255 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
70098320 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
70098334 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
70098397 TATATTC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70098413 CCGAAGG
1 CCGAAGG
70098420 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.66
80 23 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70103978 original size:14 final size:15
Alignment explanation
Indices: 70103949--70103981 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
70103939 AGAAAGATAA
*
70103949 AAAATGACCAAAAAC
1 AAAACGACCAAAAAC
70103964 AAAACGACC-AAAAC
1 AAAACGACCAAAAAC
70103978 AAAA
1 AAAA
70103982 AGGTTGCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.70, C:0.21, G:0.06, T:0.03
Consensus pattern (15 bp):
AAAACGACCAAAAAC
Found at i:70105747 original size:2 final size:2
Alignment explanation
Indices: 70105736--70105764 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
70105726 TGAAAGTCGA
70105736 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70105765 TATTTTGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:70107094 original size:43 final size:43
Alignment explanation
Indices: 70107033--70107145 Score: 163
Period size: 43 Copynumber: 2.6 Consensus size: 43
70107023 GCTGGTATTA
* **
70107033 TATTCGAGCCTTCGTGCCTAGCATGCTTTGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCATGCTTCATACCGGTGATGTG
* *
70107076 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCATGCTTCATACCGGTGATGTG
* *
70107119 TATTCGGGCCTTTGAGCCTAGCATGCT
1 TATTCGGGCCTTCGTGCCTAGCATGCT
70107146 ATAATGCCAG
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.13, C:0.25, G:0.29, T:0.33
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCATGCTTCATACCGGTGATGTG
Found at i:70113100 original size:27 final size:27
Alignment explanation
Indices: 70113067--70113120 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
70113057 AAAAAGATTG
70113067 AAACATACTTTAAAATTCATGCAAAAT
1 AAACATACTTTAAAATTCATGCAAAAT
70113094 AAACATACTTTAAAATTCATGCAAAAT
1 AAACATACTTTAAAATTCATGCAAAAT
70113121 GCCTTACTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.15, G:0.04, T:0.30
Consensus pattern (27 bp):
AAACATACTTTAAAATTCATGCAAAAT
Found at i:70115857 original size:30 final size:30
Alignment explanation
Indices: 70115823--70115880 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
70115813 TTTTCGAGCA
*
70115823 TAGGGGTAAAATGGTCATTTTACCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
70115853 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
70115881 GTGTGAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:70116419 original size:49 final size:48
Alignment explanation
Indices: 70116271--70116439 Score: 186
Period size: 49 Copynumber: 3.6 Consensus size: 48
70116261 AGAGCCACTT
* * * *
70116271 TAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACGAGTGCTAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCCATCGAGATGA-TGCCAGTG
* * *
70116319 TAAGA-CATGTCTAGGACA-GGCATCGGCTA-CGAAATG-TGTCAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCCATCGAGATGATGCCAGTG
* * * *
70116363 AAAGACCATGTCTGGGACATGGCATCGGCCATGGTGATGATAGCCAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCCATCGAGATGAT-GCCAGTG
70116412 TAAGACCATGTCTAGGACATGGCATCGG
1 TAAGACCATGTCTAGGACATGGCATCGG
70116440 TAACTTGCCC
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
44 10 0.10
45 12 0.12
46 22 0.22
47 17 0.17
48 6 0.06
49 32 0.32
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (48 bp):
TAAGACCATGTCTAGGACATGGCATCGGCCATCGAGATGATGCCAGTG
Found at i:70117535 original size:21 final size:22
Alignment explanation
Indices: 70117509--70117551 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
70117499 TTAAAATGGT
* *
70117509 CACACGGGCATGTTACC-CTTC
1 CACACGAGCATGTGACCTCTTC
70117530 CACACGAGCATGTGACCTCTTC
1 CACACGAGCATGTGACCTCTTC
70117552 AAGGATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.21, C:0.37, G:0.19, T:0.23
Consensus pattern (22 bp):
CACACGAGCATGTGACCTCTTC
Found at i:70123116 original size:28 final size:29
Alignment explanation
Indices: 70123018--70123116 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
70123008 TCACAAATTG
* *
70123018 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
70123047 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
70123075 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
70123103 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70123117 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:70130728 original size:28 final size:28
Alignment explanation
Indices: 70130663--70130760 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
70130653 ATTGGTTTCG
* * *
70130663 GCACTAAGTGTGCAGGTTCAAATTGTATA
1 GCACTAAGTGTGCAAGTT-AGATTATATA
*
70130692 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTAGATTATATA
* * *
70130720 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTAGATTATAT-A
70130748 GCACTAAGTGTGC
1 GCACTAAGTGTGC
70130761 GGGCTTATTA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.70
29 17 0.28
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTAGATTATATA
Found at i:70132299 original size:6 final size:6
Alignment explanation
Indices: 70132282--70132376 Score: 61
Period size: 6 Copynumber: 15.3 Consensus size: 6
70132272 AAGAAACATT
* * * *
70132282 ATCAGA A-CTAGA ATTAGA ATCAGA ATCAAA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
70132331 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA AT
70132377 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 12, Indels: 18
0.69 0.12 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.76
7 10 0.15
8 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:70132334 original size:31 final size:31
Alignment explanation
Indices: 70132297--70132365 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
70132287 AACTAGAATT
* *
70132297 AGAATCAGAATCAAAATCAGAATTAGGTGAC
1 AGAATCAGAATCAAAATCAGAATCAGGTAAC
* *
70132328 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAAAATCAGAATCAGGTAAC
70132359 AGAATCA
1 AGAATCA
70132366 AAAATCAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAAAATCAGAATCAGGTAAC
Found at i:70132841 original size:27 final size:27
Alignment explanation
Indices: 70132784--70133113 Score: 430
Period size: 27 Copynumber: 12.3 Consensus size: 27
70132774 GGGGCAAAAT
* * *
70132784 GGTAATTTTACCCTACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
70132810 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
70132837 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
70132864 GGTAATTCTACCCTATAGAGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
70132891 GGTAATTCTACCCTGCAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
70132918 AGTAATTCTACCCTAAAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
70132945 GATAATTCTACCCCACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
70132972 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
70132999 GATAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
70133025 TGGTAATTCTACCCTACAGGGGTATTCC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
70133053 GGTAAGTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
70133080 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
70133107 GGTAATT
1 GGTAATT
70133114 TCACAAATCA
Statistics
Matches: 262, Mismatches: 39, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
26 17 0.06
27 243 0.93
28 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:70133210 original size:54 final size:54
Alignment explanation
Indices: 70133095--70133682 Score: 189
Period size: 54 Copynumber: 10.9 Consensus size: 54
70133085 TTCTACCCTA
** * * **
70133095 CAAGGGTATTTCGGTAATTTCACAAATC-AGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAATCGA-GGGTATTTTGGTAATTTTGTAAAC
* * * **
70133149 TAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* *** * *
70133203 CAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* **** * * *** * * *
70133257 CGAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* *** * * * *** * * *
70133311 CGAGGGTAAAATGGTAATTCTATAAATCGAAGGTAAAATGATAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* *** * * ** ** ** *
70133365 CGAGGGTAAAATGGTAATTCTATCTTAT--AGGAGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTAT-AAATCGAGG-GTATTTTGGTAATTTTGTAAAC
* * ** * ** *
70133419 CGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAATC-GAGGGTATTTTGGTAATTTTGTAAAC
* * ** * * * ** **
70133473 CGAGAGATATTTGGGCAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAGT
1 CAAG-GGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* * * ** *
70133528 CGAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
1 CAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
** * ** * * * ** *
70133582 TGAGAGTATTTCGGTAATTTTACAAATCAAAGGTATTTCAGTAA-TTT-TACAAT
1 CAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTA-AAC
* ** * * * *
70133635 CGACAGTATTTTGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTT
1 CAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTT
70133683 ACAACTGGGG
Statistics
Matches: 426, Mismatches: 98, Indels: 20
0.78 0.18 0.04
Matches are distributed among these distances:
52 1 0.00
53 41 0.10
54 335 0.79
55 48 0.11
56 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (54 bp):
CAAGGGTATTTTAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
Found at i:70133224 original size:27 final size:27
Alignment explanation
Indices: 70133095--70133683 Score: 137
Period size: 27 Copynumber: 21.8 Consensus size: 27
70133085 TTCTACCCTA
* * * *
70133095 CAAGGGTATTTCGGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
70133122 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * ** *
70133149 TAGGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
70133176 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
70133203 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** * * *
70133230 CGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ***** * * *
70133257 CGAGGGTAAGACAGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** * *
70133284 CGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** *
70133311 CGAGGGTAAAATGGTAATTCTATAAATC
1 CAAGGGTATTTTGGTAATTTTATAAA-C
* *** * * * *
70133339 GAA-GGTAAAATGATAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** *
70133365 CGAGGGTAAAATGGTAATTCTAT---C
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** * *
70133389 TTATAGGAGTATTTCAGTAATTTTACAAAT
1 -CA-AGG-GTATTTTGGTAATTTTATAAAC
* ** **
70133419 CGAGGGTATTTCAGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * *
70133446 TGAGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * * *
70133473 CGAGAGATATTTGGGCAATTTTATAAAT
1 CAAG-GGTATTTTGGTAATTTTATAAAC
** * * **
70133501 CGGGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
70133528 CGAGGGTATTTTAGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** **
70133555 CAAGGGTATTTCAGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * * * *
70133582 TGAGAGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** * *
70133609 CAAAGGTATTTCAGTAATTTTACAATC
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
70133636 GACA--GTATTTTGGTAATTTTATAAAC
1 CA-AGGGTATTTTGGTAATTTTATAAAC
** *
70133662 CGGGGGTACTTTGGTAATTTTA
1 CAAGGGTATTTTGGTAATTTTA
70133684 CAACTGGGGG
Statistics
Matches: 447, Mismatches: 103, Indels: 24
0.78 0.18 0.04
Matches are distributed among these distances:
26 22 0.05
27 398 0.89
28 27 0.06
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:70133245 original size:81 final size:81
Alignment explanation
Indices: 70133189--70133387 Score: 240
Period size: 81 Copynumber: 2.5 Consensus size: 81
70133179 GGGTATTTTG
* *** * * *
70133189 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTA
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
70133254 AATCGAGGGTAAGACA
66 AATCGAGGGTAAGACA
* * *
70133270 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
*
70133335 AATCGAAGGTAA-A-A
66 AATCGAGGGTAAGACA
* * *
70133349 TGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTAT
1 -G-TAATTCTGTAAACCAAGGGTAAAATAGTAATTCTAT
70133388 CTTATAGGAG
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
79 1 0.01
80 2 0.02
81 102 0.97
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
GTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
AATCGAGGGTAAGACA
Found at i:70133552 original size:136 final size:134
Alignment explanation
Indices: 70133397--70133707 Score: 408
Period size: 136 Copynumber: 2.3 Consensus size: 134
70133387 TCTTATAGGA
* *
70133397 GTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGGTA
1 GTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGAGTATTTCGGTA
* ** *** *
70133462 ATTTTACAAATCGAGAGATATTTGGGCAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAG
66 ATTTTACAAATC-AAAGATATTTCAGCAATTTTA-AAATCGACAGTACTTTGGTAATTTTACAAA
*
70133527 TCGAGG
129 CCGAGG
*
70133533 GTATTTTAGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAACTGAGAGTATTTCGGTA
1 GTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGAGTATTTCGGTA
* * * * *
70133598 ATTTTACAAATCAAAGGTATTTCAGTAATTTTACAATCGACAGTATTTTGGTAATTTTATAAACC
66 ATTTTACAAATCAAAGATATTTCAGCAATTTTAAAATCGACAGTACTTTGGTAATTTTACAAACC
*
70133663 GGGG
131 GAGG
* * * *
70133667 GTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 GTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
70133708 GGTAAACTAA
Statistics
Matches: 153, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
133 17 0.11
134 46 0.30
135 16 0.10
136 74 0.48
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (134 bp):
GTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGAGTATTTCGGTA
ATTTTACAAATCAAAGATATTTCAGCAATTTTAAAATCGACAGTACTTTGGTAATTTTACAAACC
GAGG
Found at i:70135883 original size:39 final size:39
Alignment explanation
Indices: 70135829--70135907 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
70135819 TAATTCGAAG
70135829 TAAGTTGTATATAAATAATACAACTACATTATTAATGTA
1 TAAGTTGTATATAAATAATACAACTACATTATTAATGTA
*
70135868 TAAGTTGTATATAAATAATACAACTACATTGTTAATGTA
1 TAAGTTGTATATAAATAATACAACTACATTATTAATGTA
70135907 T
1 T
70135908 GTACTGAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.39
Consensus pattern (39 bp):
TAAGTTGTATATAAATAATACAACTACATTATTAATGTA
Found at i:70136012 original size:29 final size:29
Alignment explanation
Indices: 70135970--70136027 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
70135960 TTGAGAAAGT
70135970 ATGATGATAATAGAGATAGCAGAGTTCCA
1 ATGATGATAATAGAGATAGCAGAGTTCCA
70135999 ATGATGATAATAGAGATAGCAGAGTTCCA
1 ATGATGATAATAGAGATAGCAGAGTTCCA
70136028 GTTTGAACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (29 bp):
ATGATGATAATAGAGATAGCAGAGTTCCA
Found at i:70136373 original size:49 final size:48
Alignment explanation
Indices: 70136087--70136401 Score: 237
Period size: 49 Copynumber: 6.7 Consensus size: 48
70136077 ATGGTGGGCT
* * * * *
70136087 AGTGTAAGA-CATATCTGGGACATGCATCAGCCACAGT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGGTGATGATAGCC
* * * * *
70136133 ACTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGATGAGT-GCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGGTGATGA-TAGCC
* * *
70136181 AGTGTAAGA-CATGTCTGAGACATGCATCGGACTCGG-GA-CATTAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGGTGATGA-TAGCC
** *
70136227 AGTGTAAGA-CATGTCTGGGACATGCATCGG-CTAC-GAAATG-T-GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGGTGATGATAGCC
* * * * *
70136271 AGTGTAAGACCATGTCT-GAACATGGCGTCGG-CACGGAT-ATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGG-TGA--TGATAGCC
70136320 AGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGGTGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGGTGATGATAGCC
*
70136369 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC
70136402 AACTTGCCCG
Statistics
Matches: 213, Mismatches: 36, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
44 17 0.08
45 22 0.10
46 51 0.24
47 30 0.14
48 21 0.10
49 55 0.26
50 12 0.06
51 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGGTGATGATAGCC
Found at i:70141065 original size:48 final size:49
Alignment explanation
Indices: 70141005--70141135 Score: 158
Period size: 49 Copynumber: 2.7 Consensus size: 49
70140995 CTTGTTATGT
* * *
70141005 GTCAGTGTAAGACCTATTTGGGACATGGCATC-AACACGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGAACACGATAGATGAAA
* ** * *
70141053 -TCCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATGAAA
1 GT-CAGTGTAAGACCTGTCTGGGACATGGCATCGAACACGATAGATGAAA
*
70141102 GTCAATGTAAGACCTGTCTGGGACATGGCATCGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGA
70141136 CTTTGATGTG
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
47 1 0.01
48 27 0.39
49 40 0.58
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGAACACGATAGATGAAA
Found at i:70143135 original size:93 final size:93
Alignment explanation
Indices: 70143023--70143194 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70143013 GCCCATAAGT
* *
70143023 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70143088 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
70143116 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70143181 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
70143195 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70143190 original size:46 final size:46
Alignment explanation
Indices: 70143015--70143190 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
70143005 TGTAACCCGC
* * *
70143015 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
70143061 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
70143111 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
70143154 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70143191 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:70145604 original size:29 final size:29
Alignment explanation
Indices: 70145565--70145652 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
70145555 CAAAGATAAC
*
70145565 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
70145594 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
70145623 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
70145653 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:70145623 original size:15 final size:15
Alignment explanation
Indices: 70145565--70145643 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
70145555 CAAAGATAAC
*
70145565 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
70145579 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
70145594 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
70145608 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
70145623 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
70145638 AAGAAA
1 AAGAAA
70145644 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:70145652 original size:15 final size:15
Alignment explanation
Indices: 70145576--70145652 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
70145566 AGAAAACCGA
70145576 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
70145591 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
70145605 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
70145619 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
70145635 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
70145650 ATA
1 ATA
70145653 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70148710 original size:93 final size:93
Alignment explanation
Indices: 70148598--70148769 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70148588 GCCCATAAGT
* *
70148598 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70148663 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
70148691 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70148756 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
70148770 AACCATCCAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70148765 original size:46 final size:46
Alignment explanation
Indices: 70148590--70148765 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
70148580 TGTAACCCGC
* * *
70148590 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
70148636 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
70148686 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
70148729 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70148766 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:70151868 original size:19 final size:19
Alignment explanation
Indices: 70151844--70151883 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
70151834 TTTCCTATTC
70151844 AATTCTTAAATCATAATTG
1 AATTCTTAAATCATAATTG
70151863 AATTCTTAAATCATAATTG
1 AATTCTTAAATCATAATTG
70151882 AA
1 AA
70151884 CTTTTATTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (19 bp):
AATTCTTAAATCATAATTG
Found at i:70154069 original size:150 final size:153
Alignment explanation
Indices: 70153821--70154271 Score: 513
Period size: 150 Copynumber: 2.9 Consensus size: 153
70153811 AATCAAAGTT
* * * * * * *
70153821 TTCTTTAAAAAAAATAATTATTTTTCTTAAAAATCAAAAC-CTTATTTTGAAATAGTTAAAAAAA
1 TTCTTTAAAAAAAA-CACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAA
* * *
70153885 ATCAAAACTTCGTTTTAAAATTTGAAATTTTCCTTTAAAATGACTTAAAAAAACATATTTTTATT
65 ATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTT-AAAAAA-ATATTTTTATT
70153950 TTTCAAAATCTAAA-T-T-C-TTTCA
128 TTTCAAAATCTAAATTCTCCTTTTCA
*
70153972 TTCTTT-AAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAGTAGTTGAAAAAAA
1 TTCTTTAAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAAA
* *
70154036 TCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGAC-TAAAAAATTTTTTTTATTTTT
66 TCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTTAAAAAAATATTTTTATTTTT
**
70154100 CAAAATCTAAACTTTCTCCTTTTTTTT
131 CAAAATCTAAA--TTCTCC--TTTTCA
* *
70154127 TTTTGTTAAAAGAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTACTTTGAAATAGTTGAAAA
1 TTCT-TT-AAA-AAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTG-AAA
* * ** * * *
70154192 AAAATCAAAATTTTGTTTAAAAAAATTAAACTTTTCTTTAAAATAACTTAAAAAATAGATTTTTA
62 AAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTTAAAAAA-ATATTTTTA
70154257 TTTGTT-AAAATCTAA
126 TTT-TTCAAAATCTAA
70154272 TTTTTTTCTT
Statistics
Matches: 256, Mismatches: 27, Indels: 23
0.84 0.09 0.08
Matches are distributed among these distances:
147 23 0.09
148 6 0.02
149 21 0.08
150 70 0.27
151 7 0.03
152 1 0.00
155 6 0.02
156 2 0.01
158 2 0.01
159 47 0.18
160 44 0.17
161 7 0.03
162 18 0.07
163 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.43
Consensus pattern (153 bp):
TTCTTTAAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAAA
TCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTTAAAAAAATATTTTTATTTTT
CAAAATCTAAATTCTCCTTTTCA
Found at i:70154215 original size:21 final size:21
Alignment explanation
Indices: 70154189--70154234 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
70154179 AAATAGTTGA
*
70154189 AAAAAAATCAAAATTTTGTTT
1 AAAAAAATCAAAATTTTCTTT
* *
70154210 AAAAAAATTAAACTTTTCTTT
1 AAAAAAATCAAAATTTTCTTT
70154231 AAAA
1 AAAA
70154235 TAACTTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (21 bp):
AAAAAAATCAAAATTTTCTTT
Found at i:70154284 original size:159 final size:154
Alignment explanation
Indices: 70153819--70154287 Score: 496
Period size: 159 Copynumber: 3.0 Consensus size: 154
70153809 AAAATCAAAG
* * * * * *
70153819 TTTTCTTTAAAAAAAATAATTATTTTTCTTAAAAATCAAAAC-CTTATTTTGAAATAGTT-AAAA
1 TTTTCTTT-AAAAAAA-CACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAA
* * *
70153882 AAAATCAAAACTTCGTTTTAAAATTTGAAA-TTTTCCTTTAAAATGACTTAAAAAAACATATTTT
64 AAAATCAAAACTTTGTTTAAAAATTT-AAACTTTT-CTTTAAAATGACTT-AAAAAATATATTTT
70153946 TATTTTTCAAAATCTAA----ATTC-TTT
126 TATTTTTCAAAATCTAATTTTATTCTTTT
** *
70153970 CATTCTTTAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAGTAGTTG-AAAAA
1 TTTTCTTTAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAA
* * *
70154034 AATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGAC-TAAAAAAT-TTTTTTTATT
66 AATCAAAACTTTG-TTTAAAAATTTAAACTTTTCTTTAAAATGACTTAAAAAATATATTTTTATT
*
70154097 TTTCAAAATCTAAACTTTCTCCTT-TTTT
130 TTTCAAAATCT-AA-TTT-T-ATTCTTTT
* *
70154125 TTTTTTGTTAAAAGAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTACTTTGAAATAGTTGAA
1 TTTTCT-TT--AA-AAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAA
* * * *
70154190 AAAAAATCAAAATTTTGTTTAAAAAAATTAAACTTTTCTTTAAAATAACTTAAAAAATAGATTTT
62 AAAAAATCAAAACTTTGTTT-AAAAATTTAAACTTTTCTTTAAAATGACTTAAAAAATATATTTT
*
70154255 TATTTGTT-AAAATCTAATTTTTTTCTTTT
126 TATTT-TTCAAAATCTAATTTTATTCTTTT
70154284 TTTT
1 TTTT
70154288 ATAAAAAATC
Statistics
Matches: 266, Mismatches: 29, Indels: 38
0.80 0.09 0.11
Matches are distributed among these distances:
147 20 0.08
148 8 0.03
149 21 0.08
150 54 0.20
151 18 0.07
155 8 0.03
156 2 0.01
158 4 0.02
159 59 0.22
160 44 0.17
161 10 0.04
162 16 0.06
163 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (154 bp):
TTTTCTTTAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAA
AATCAAAACTTTGTTTAAAAATTTAAACTTTTCTTTAAAATGACTTAAAAAATATATTTTTATTT
TTCAAAATCTAATTTTATTCTTTT
Found at i:70156287 original size:50 final size:49
Alignment explanation
Indices: 70156165--70156394 Score: 241
Period size: 50 Copynumber: 4.6 Consensus size: 49
70156155 CTGATATGCA
* * * *
70156165 TAGTAGCCTGCACTTAGTACTACACATGCGA-TCAACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTCAAC-ATCTGATACACG
*
70156214 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCATCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CTCAACATCTGATACACG
* * * *
70156264 TAGTAGCCTGCACTTAGTGCTACACACGTGA-TCGAAGTCAT-TAAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTC-AA--CATCTGA-TACACG
* * * * *
70156315 TAGTAGCCTGCACTTAGTACCACACATGCGACTTAACAGTATGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTCAACA-TCTGATACACG
*
70156365 TAGTAGCCTACACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
70156395 TATTCACAAT
Statistics
Matches: 150, Mismatches: 22, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
48 2 0.01
49 32 0.21
50 73 0.49
51 42 0.28
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTCAACATCTGATACACG
Found at i:70163246 original size:50 final size:51
Alignment explanation
Indices: 70163122--70163358 Score: 181
Period size: 49 Copynumber: 4.7 Consensus size: 51
70163112 AGCCGAAGCT
* *
70163122 ATCTGATACACATAGTAGTCTGCACTTAGTACT--ACACATGCAATCAGCA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGCAATCAGCA
* * * *
70163171 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACATG-ACCTCATC-
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGCA-ATCAGCA
* *
70163221 ATCTGATACACGTAGTTGCCTGCACTTAGTACTACACACGTG--ATC-G-A
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGCAATCAGCA
* * * * * *
70163268 AGTCATTGAGTACGCATAGTAGCCTGCACTTAGAACT--A-ACATGCGACTTAACA
1 A-TC--TGA-TACACGTAGTAGCCTGCACTTAGTACTACACACATGC-AATCAGCA
* * * *
70163321 GTATGATACACATAGTAGCCTACACTTAGTACTACACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
70163359 TGTGTATTCG
Statistics
Matches: 147, Mismatches: 25, Indels: 29
0.73 0.12 0.14
Matches are distributed among these distances:
47 1 0.01
48 8 0.05
49 54 0.37
50 45 0.31
51 36 0.24
52 2 0.01
53 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (51 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGCAATCAGCA
Done.