Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 225 of 433
Found at i:70164250 original size:16 final size:16
Alignment explanation
Indices: 70164229--70164259 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
70164219 CCAAACTCTA
70164229 AATGCAATGAAAAGTT
1 AATGCAATGAAAAGTT
70164245 AATGCAATGAAAAGT
1 AATGCAATGAAAAGT
70164260 AAGCTAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.19, T:0.23
Consensus pattern (16 bp):
AATGCAATGAAAAGTT
Found at i:70164377 original size:42 final size:42
Alignment explanation
Indices: 70164308--70164475 Score: 203
Period size: 42 Copynumber: 4.0 Consensus size: 42
70164298 TAAACTAGAC
* ** *
70164308 AAGTAAATGAACCTCCACAGTTGGGTCTCTAGATGCAATGAA
1 AAGTAAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAA
*
70164350 AAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAA
1 AAGTAAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAA
* * * *
70164392 AAGTAAATGGACCTTCACATCTGAG-CTTTTAAATGCAATGAA
1 AAGTAAATGGACCTCCACACCTGGGTC-TCTAAATGCAATGAA
* * * *
70164434 AAGTAAATGGACCTCCACTCCTCGGCCTCTAAATGCGATGAA
1 AAGTAAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAA
70164476 TGTTTTCCTT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
41 1 0.01
42 105 0.98
43 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (42 bp):
AAGTAAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAA
Found at i:70164745 original size:20 final size:21
Alignment explanation
Indices: 70164722--70164761 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70164712 CCCTTGAAAC
*
70164722 AGGGC-ACACGCCCTTGTGGA
1 AGGGCAACACGCCCGTGTGGA
70164742 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
70164762 CCATTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.30, G:0.38, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:70166087 original size:98 final size:96
Alignment explanation
Indices: 70165916--70166093 Score: 243
Period size: 98 Copynumber: 1.8 Consensus size: 96
70165906 TAGGTATAAT
* * * *
70165916 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAG
1 GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGCCGATGCCATATCCCAG
70165981 ACATGGTCTTACACTGACTATCAAAATCGAA
66 ACATGGTCTTACACTGACTATCAAAATCGAA
* * *
70166012 GCCGACGCCAT-TCCCAGACATGGTCTTACACTAGCTC-TCACATATCCATGCCGATGTCATATC
1 GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCATC-C--AT-CAAGCCGATGCCATATC
70166075 CCAGACATGGTCTTACACT
62 CCAGACATGGTCTTACACT
70166094 AACACCTCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
94 2 0.03
95 25 0.35
96 10 0.14
97 2 0.03
98 32 0.45
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (96 bp):
GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCATCCATCAAGCCGATGCCATATCCCAG
ACATGGTCTTACACTGACTATCAAAATCGAA
Found at i:70166133 original size:48 final size:50
Alignment explanation
Indices: 70165965--70166141 Score: 141
Period size: 48 Copynumber: 3.6 Consensus size: 50
70165955 TCCATCAAGT
** * * *
70165965 CGATGCCATGTCCCAGACATGGTCTTACACTGACTA-TCA-AAAT-CGAAGC
1 CGATGCCATACCCCAGACATGGTCTTACACTAAC-ACTCACATATAC-ATGC
* * * * *
70166014 CGACGCCAT-TCCCAGACATGGTCTTACACTAGCTCTCACATATCCATGC
1 CGATGCCATACCCCAGACATGGTCTTACACTAACACTCACATATACATGC
* * * * *
70166063 CGATGTCATATCCCAGACATGGTCTTACACTAACAC-CTC-TATACGTTC
1 CGATGCCATACCCCAGACATGGTCTTACACTAACACTCACATATACATGC
* *
70166111 CGATGCCATGCCCCAGACATGGTTTTACACT
1 CGATGCCATACCCCAGACATGGTCTTACACT
70166142 GGCACATCTC
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
48 58 0.55
49 23 0.22
50 25 0.24
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (50 bp):
CGATGCCATACCCCAGACATGGTCTTACACTAACACTCACATATACATGC
Found at i:70166185 original size:44 final size:45
Alignment explanation
Indices: 70166125--70166231 Score: 112
Period size: 46 Copynumber: 2.4 Consensus size: 45
70166115 GCCATGCCCC
* *
70166125 AGACATGGTTTTACACTGGC-ACATCTCGTA-GCCAATACATGTCCT
1 AGACAT-GTCTTACACTGGCTACATATCG-AGGCCAATACATGTCCT
** *
70166170 AGACATGTCTTACACTGGCTTACATATCGAGGCTGATGCATGTCCT
1 AGACATGTCTTACACTGGC-TACATATCGAGGCCAATACATGTCCT
70166216 AGA-AGTGTCTTACACT
1 AGACA-TGTCTTACACT
70166232 AGCTCTCGTC
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
44 12 0.23
45 8 0.15
46 33 0.62
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (45 bp):
AGACATGTCTTACACTGGCTACATATCGAGGCCAATACATGTCCT
Found at i:70168014 original size:20 final size:20
Alignment explanation
Indices: 70167989--70168026 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70167979 GTTTATTCGC
*
70167989 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
70168009 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
70168027 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:70169686 original size:28 final size:28
Alignment explanation
Indices: 70169654--70169722 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
70169644 GCGTAGATCA
70169654 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
70169682 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
70169710 CGATA-TACCCCTA
1 CGAAATTACCCCTA
70169723 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:70176023 original size:20 final size:20
Alignment explanation
Indices: 70175998--70176035 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70175988 GTTTATTCGC
*
70175998 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
70176018 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
70176036 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:70177696 original size:28 final size:28
Alignment explanation
Indices: 70177664--70177732 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
70177654 GCGTAGATCA
70177664 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
70177692 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
70177720 CGATA-TACCCCTA
1 CGAAATTACCCCTA
70177733 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:70181536 original size:42 final size:43
Alignment explanation
Indices: 70181475--70181557 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 43
70181465 CCTAGACATA
**
70181475 TCTTACACTAGCTTACGTCTCGAGGCCGATG-CATGTCCCATG
1 TCTTACACTAGCACACGTCTCGAGGCCGATGCCATGTCCCATG
* * *
70181517 TCTTACACTAGCACCCGTCTTGATGCCGATGCCATGTCCCA
1 TCTTACACTAGCACACGTCTCGAGGCCGATGCCATGTCCCA
70181558 GACATGGCCT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 26 0.74
43 9 0.26
ACGTcount: A:0.19, C:0.34, G:0.19, T:0.28
Consensus pattern (43 bp):
TCTTACACTAGCACACGTCTCGAGGCCGATGCCATGTCCCATG
Found at i:70183254 original size:139 final size:139
Alignment explanation
Indices: 70183022--70183290 Score: 430
Period size: 139 Copynumber: 1.9 Consensus size: 139
70183012 TGGTTGAGCA
* *
70183022 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTG
1 TCCGAACTCGTTGAGCTGAGTCCGAGTTCGAGAAATGTAACTAGGCATCCGAACTCGTTGAGTTG
*
70183087 AGTCCGAGTTCACTTATAGATGCGAACGCCCAAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
66 AGTCCGAGTTCACTTATAGATGCAAACGCCCAAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
70183152 ATGCGAATG
131 ATGCGAATG
* * * *
70183161 TCCGAACTCGTTGAGCTGAGTCCGAGTTCGAGAGATGTAACTAGGCATTCGAGCTTGTTGAGTTG
1 TCCGAACTCGTTGAGCTGAGTCCGAGTTCGAGAAATGTAACTAGGCATCCGAACTCGTTGAGTTG
* * * **
70183226 AGTCTGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
66 AGTCCGAGTTCACTTATAGATGCAAACGCCCAAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
70183291 GCGGGTTACA
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
139 118 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (139 bp):
TCCGAACTCGTTGAGCTGAGTCCGAGTTCGAGAAATGTAACTAGGCATCCGAACTCGTTGAGTTG
AGTCCGAGTTCACTTATAGATGCAAACGCCCAAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
ATGCGAATG
Found at i:70183289 original size:46 final size:46
Alignment explanation
Indices: 70183070--70183290 Score: 216
Period size: 46 Copynumber: 4.8 Consensus size: 46
70183060 AACTAGGCAT
* * *
70183070 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * *
70183116 CCAAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * *
70183162 CCGAACTCGTTGAGCTGAGTCCGAGTT--C-GA-GAGATGTAACTAGGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ACGC
* * *
70183207 ATTCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGC
1 --CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
70183255 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70183291 GCGGGTTACA
Statistics
Matches: 141, Mismatches: 25, Indels: 18
0.77 0.14 0.10
Matches are distributed among these distances:
42 1 0.01
43 6 0.04
44 1 0.01
45 2 0.01
46 97 0.69
47 22 0.16
48 3 0.02
49 1 0.01
50 7 0.05
51 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:70191947 original size:47 final size:47
Alignment explanation
Indices: 70191843--70192061 Score: 146
Period size: 47 Copynumber: 4.7 Consensus size: 47
70191833 GGTAAGGTGT
*
70191843 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGT
1 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGC
* * * *
70191890 CGATGCCATGTCCTAGGCATGGTCTTACACT-GACT-ATCATCTCGTAGC
1 CGATGCCATGTCCCAGACACGGTCTTACACTAG-CTCAT-ATCTCAT-GC
*** * * * * *
70191938 CGATG-CATGTTTGAGACA-TGTCTTACACTGGCTTATGTCTCGAGGC
1 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTC-ATGC
* * * * * ***
70191984 CGTTG-CATGCCCCAGACA-TGTCTTACACCAGCACCCGTCTCGATGC
1 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTC-ATGC
*
70192030 CGATGCCATGTCCCAGACA-TGTCTTACACTAG
1 CGATGCCATGTCCCAGACACGGTCTTACACTAG
70192062 TGTGTCATGG
Statistics
Matches: 137, Mismatches: 28, Indels: 14
0.77 0.16 0.08
Matches are distributed among these distances:
46 59 0.43
47 72 0.53
48 6 0.04
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGC
Found at i:70191979 original size:46 final size:46
Alignment explanation
Indices: 70191911--70192059 Score: 117
Period size: 46 Copynumber: 3.2 Consensus size: 46
70191901 CCTAGGCATG
****
70191911 GTCTTACACTGACTATCATCTCGTA-GCCGATGCATGTTTGAGACAT
1 GTCTTACACTGACTATCATCTCG-AGGCCGATGCATGCCCCAGACAT
* * *
70191957 GTCTTACACTGGCTTAT-GTCTCGAGGCCGTTGCATGCCCCAGACAT
1 GTCTTACACTGAC-TATCATCTCGAGGCCGATGCATGCCCCAGACAT
* * * * *
70192003 GTCTTACAC-CAGC-ACCCGTCTCGATGCCGATGCCATGTCCCAGACAT
1 GTCTTACACTGA-CTA-TCATCTCGAGGCCGATG-CATGCCCCAGACAT
70192050 GTCTTACACT
1 GTCTTACACT
70192060 AGTGTGTCAT
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 56 0.67
47 25 0.30
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (46 bp):
GTCTTACACTGACTATCATCTCGAGGCCGATGCATGCCCCAGACAT
Found at i:70195613 original size:13 final size:13
Alignment explanation
Indices: 70195595--70195620 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70195585 AATATGTTTC
70195595 TTGATTGTTTTGG
1 TTGATTGTTTTGG
70195608 TTGATTGTTTTGG
1 TTGATTGTTTTGG
70195621 CATGGATTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TTGATTGTTTTGG
Found at i:70200975 original size:27 final size:27
Alignment explanation
Indices: 70200945--70201072 Score: 172
Period size: 26 Copynumber: 4.8 Consensus size: 27
70200935 AAGACCCAGA
* * *
70200945 TTGTAAAATTATCAAAATACCCCCAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
70200972 TTGTAAAATTACCAAAATA-CCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
70200998 TTGTAAAATTA-CAGAAATACCCCTGGT
1 TTGTAAAATTACCA-AAATACCCCTAGT
70201025 TTGTAAAATTACCAAAATA-CCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
70201051 TTGTAAAATTATCGAAATACCC
1 TTGTAAAATTACCAAAATACCC
70201073 TTGTAGTATA
Statistics
Matches: 90, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
25 2 0.02
26 44 0.49
27 42 0.47
28 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:70201028 original size:53 final size:54
Alignment explanation
Indices: 70200945--70201072 Score: 208
Period size: 53 Copynumber: 2.4 Consensus size: 54
70200935 AAGACCCAGA
70200945 TTGTAAAATTATCA-AAATACCCCCAATTTGTAAAATTACCAAAATACCCTAGT
1 TTGTAAAATTATCAGAAATACCCCCAATTTGTAAAATTACCAAAATACCCTAGT
***
70200998 TTGTAAAATTA-CAGAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTAGT
1 TTGTAAAATTATCAGAAATACCCCCAATTTGTAAAATTACCAAAATACCCTAGT
70201051 TTGTAAAATTATC-GAAATACCC
1 TTGTAAAATTATCAGAAATACCC
70201073 TTGTAGTATA
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
52 2 0.03
53 67 0.96
54 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTATCAGAAATACCCCCAATTTGTAAAATTACCAAAATACCCTAGT
Found at i:70201089 original size:27 final size:27
Alignment explanation
Indices: 70201028--70201105 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
70201018 CCCTGGTTTG
* * * * *
70201028 TAAAATTACCAAAATACCCTAGT-TTG
1 TAAAATTATCGAAATACCCTTGTAGTA
70201054 TAAAATTATCGAAATACCCTTGTAGTA
1 TAAAATTATCGAAATACCCTTGTAGTA
*
70201081 TAAAATTATTGAAATACCCTTGTAG
1 TAAAATTATCGAAATACCCTTGTAG
70201106 GGCAAAATGA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
26 20 0.44
27 25 0.56
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTATCGAAATACCCTTGTAGTA
Found at i:70201100 original size:53 final size:53
Alignment explanation
Indices: 70200975--70201088 Score: 169
Period size: 53 Copynumber: 2.2 Consensus size: 53
70200965 CCCCAATTTG
* *
70200975 TAAAATTACCAAAATACCCTAGTTTGTAAAATTACAGAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCTAGTTTGTAAAATTACAGAAATACCCCTGGTGTA
*
70201028 TAAAATTACCAAAATACCCTAGTTTGTAAAATTATC-GAAATA-CCCTTGTAGTA
1 TAAAATTACCAAAATACCCTAGTTTGTAAAATTA-CAGAAATACCCCTGGT-GTA
70201081 TAAAATTA
1 TAAAATTA
70201089 TTGAAATACC
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
52 6 0.11
53 49 0.88
54 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.32
Consensus pattern (53 bp):
TAAAATTACCAAAATACCCTAGTTTGTAAAATTACAGAAATACCCCTGGTGTA
Found at i:70201112 original size:27 final size:27
Alignment explanation
Indices: 70201055--70201113 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
70201045 CCTAGTTTGT
* *
70201055 AAAATTATCGAAATACCCTTGTAGTAT
1 AAAATTATCGAAATACCCTTGTAGGAC
* *
70201082 AAAATTATTGAAATACCCTTGTAGGGC
1 AAAATTATCGAAATACCCTTGTAGGAC
70201109 AAAAT
1 AAAAT
70201114 GACTATTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTTGTAGGAC
Found at i:70206359 original size:15 final size:15
Alignment explanation
Indices: 70206339--70206369 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
70206329 GTTAATCAAA
*
70206339 ACTCATTTTTTTCTC
1 ACTCATTTTTCTCTC
70206354 ACTCATTTTTCTCTC
1 ACTCATTTTTCTCTC
70206369 A
1 A
70206370 TTTTCTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.29, G:0.00, T:0.55
Consensus pattern (15 bp):
ACTCATTTTTCTCTC
Found at i:70210453 original size:14 final size:14
Alignment explanation
Indices: 70210434--70210461 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70210424 ACGACACTTC
70210434 TTGTCGACGATCGG
1 TTGTCGACGATCGG
70210448 TTGTCGACGATCGG
1 TTGTCGACGATCGG
70210462 CCAACTTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.36, T:0.29
Consensus pattern (14 bp):
TTGTCGACGATCGG
Found at i:70218576 original size:29 final size:30
Alignment explanation
Indices: 70218534--70218602 Score: 122
Period size: 29 Copynumber: 2.3 Consensus size: 30
70218524 TTAAAGAATC
70218534 TGGCATGGAGAAGATGAGAAAA-TTGGCTA
1 TGGCATGGAGAAGATGAGAAAATTTGGCTA
70218563 TGGCATGGAGAAGATGAGAAAATTTTGGCTA
1 TGGCATGGAGAAGATGAGAAAA-TTTGGCTA
70218594 TGGCATGGA
1 TGGCATGGA
70218603 ATTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 22 0.58
31 16 0.42
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (30 bp):
TGGCATGGAGAAGATGAGAAAATTTGGCTA
Found at i:70218607 original size:19 final size:19
Alignment explanation
Indices: 70218583--70218621 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
70218573 AAGATGAGAA
70218583 AATTTTGGCTATGGCATGG
1 AATTTTGGCTATGGCATGG
70218602 AATTTTGGCTATGGCATGG
1 AATTTTGGCTATGGCATGG
70218621 A
1 A
70218622 GAAGATGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.10, G:0.31, T:0.36
Consensus pattern (19 bp):
AATTTTGGCTATGGCATGG
Found at i:70220081 original size:13 final size:13
Alignment explanation
Indices: 70220063--70220087 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70220053 ACCAATTCAG
70220063 TTCATTTAAACTT
1 TTCATTTAAACTT
70220076 TTCATTTAAACT
1 TTCATTTAAACT
70220088 CCAGCTGGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (13 bp):
TTCATTTAAACTT
Found at i:70223061 original size:19 final size:20
Alignment explanation
Indices: 70223038--70223084 Score: 71
Period size: 19 Copynumber: 2.4 Consensus size: 20
70223028 AAAAATGATA
70223038 AAAGAAAATGAGAAA-AAGAC
1 AAAGAAAA-GAGAAAGAAGAC
70223058 -AAGAAAAGAGAAAGAAGAC
1 AAAGAAAAGAGAAAGAAGAC
70223077 AAAGAAAA
1 AAAGAAAA
70223085 AGATTGTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.24
19 12 0.48
20 7 0.28
ACGTcount: A:0.72, C:0.04, G:0.21, T:0.02
Consensus pattern (20 bp):
AAAGAAAAGAGAAAGAAGAC
Found at i:70234740 original size:40 final size:40
Alignment explanation
Indices: 70234675--70234842 Score: 192
Period size: 40 Copynumber: 4.2 Consensus size: 40
70234665 TGGAATACAA
* * **
70234675 CCGGATATAACCACATGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
70234715 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
70234755 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
70234795 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
70234835 CCGGATAT
1 CCGGATAT
70234843 CATTTAATTG
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:70234819 original size:80 final size:80
Alignment explanation
Indices: 70234675--70234842 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 80
70234665 TGGAATACAA
* * * *
70234675 CCGGATATAACCACATGCATGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATG
70234740 CCTTCGGGTA-TTAGC
66 CCTTCGGG-ACTTAGC
* * ** * *
70234755 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAACCCGGATTTAACTACTAGCATAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATG
*
70234820 TCTTCGGGACTTAGC
66 CCTTCGGGACTTAGC
70234835 CCGGATAT
1 CCGGATAT
70234843 CATTTAATTG
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
79 1 0.01
80 74 0.99
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAACCCGGATAGAACGACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:70237570 original size:28 final size:28
Alignment explanation
Indices: 70237505--70237618 Score: 86
Period size: 28 Copynumber: 4.1 Consensus size: 28
70237495 CAAATACCTG
* * * *
70237505 TATATGGCCCACTAGGCCCAATCTCCTT
1 TATACGGCCCATTAGGCCCAATCACATT
* ** *
70237533 CATATTGCCCATTAGGGCCAATCACATT
1 TATACGGCCCATTAGGCCCAATCACATT
** * *
70237561 TATGTGGCCCGTTAAGCCCAAATCACATT
1 TATACGGCCCATTAGGCCC-AATCACATT
* *
70237590 CATACGG-CCATTAGGCCCAATCACGTT
1 TATACGGCCCATTAGGCCCAATCACATT
70237617 TA
1 TA
70237619 CAGTCATGCT
Statistics
Matches: 66, Mismatches: 19, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
27 9 0.14
28 44 0.67
29 13 0.20
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (28 bp):
TATACGGCCCATTAGGCCCAATCACATT
Found at i:70237872 original size:16 final size:16
Alignment explanation
Indices: 70237833--70237874 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
70237823 TAGCCAAACT
*
70237833 TTCAGCTTTTCGGCAT
1 TTCAGCTTTTCGGCAG
*
70237849 TTTAGCTTTTCGGCAG
1 TTCAGCTTTTCGGCAG
*
70237865 TTCGGCTTTT
1 TTCAGCTTTT
70237875 ACCAATCTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.10, C:0.21, G:0.21, T:0.48
Consensus pattern (16 bp):
TTCAGCTTTTCGGCAG
Found at i:70241383 original size:29 final size:28
Alignment explanation
Indices: 70241350--70241455 Score: 99
Period size: 29 Copynumber: 3.7 Consensus size: 28
70241340 ATAATATGGT
*
70241350 TTGGGCCTAATGAGCCATATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAAT-AGAA
* * *
70241379 TTGGGCCTAGTCGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATA-GAA
* * *
70241408 CTGGGCC-AGATGGGCTATTTGAATA-AGA
1 TTGGGCCTA-ATGGGCCATATGAATAGA-A
70241436 TTGGGCCTAATGGGCCATAT
1 TTGGGCCTAATGGGCCATAT
70241456 TCATGTATGT
Statistics
Matches: 60, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
27 1 0.02
28 18 0.30
29 41 0.68
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAGAA
Found at i:70249299 original size:40 final size:40
Alignment explanation
Indices: 70249168--70249308 Score: 178
Period size: 40 Copynumber: 3.5 Consensus size: 40
70249158 ACTCAAGTTT
* * * *
70249168 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * * *
70249207 CTTCGGGTCTTAACTCGGACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
70249247 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
70249287 CTTCGGGTCTTAGCCCAGATAT
1 CTTCGGGTCTTAGCCCGGATAT
70249309 CATTCAAATG
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
38 1 0.01
39 10 0.11
40 76 0.87
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:70252191 original size:18 final size:17
Alignment explanation
Indices: 70252168--70252210 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
70252158 GAATTGGCCA
70252168 AATGGGCCGGAATGGGCT
1 AATGGGCCGG-ATGGGCT
* *
70252186 AATGGGTCTGATGGGCT
1 AATGGGCCGGATGGGCT
*
70252203 ATTGGGCC
1 AATGGGCC
70252211 CATAATTGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.19, C:0.16, G:0.42, T:0.23
Consensus pattern (17 bp):
AATGGGCCGGATGGGCT
Found at i:70252315 original size:29 final size:29
Alignment explanation
Indices: 70252283--70252389 Score: 121
Period size: 29 Copynumber: 3.7 Consensus size: 29
70252273 ATAATATGAT
70252283 TTGGGCCTAATGGGCCATATGAATAATAA
1 TTGGGCCTAATGGGCCATATGAATAATAA
* *
70252312 TTGGGCCTAGTGGGCCATAAGAAT-ATGAA
1 TTGGGCCTAATGGGCCATATGAATAAT-AA
* * *
70252341 CTGGGCC-AGATGGGCCATTTGAATAA-GA
1 TTGGGCCTA-ATGGGCCATATGAATAATAA
*
70252369 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
70252390 CATGTATGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
28 20 0.31
29 43 0.67
30 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATAATAA
Found at i:70252364 original size:58 final size:57
Alignment explanation
Indices: 70252275--70252387 Score: 165
Period size: 58 Copynumber: 2.0 Consensus size: 57
70252265 GCATGAATAT
**
70252275 AATATGATTTGGGCCTAATGGGCCATATGAATAATAATTGGGCCTAGTGGGCCATAAG
1 AATATGAACTGGGCCTAATGGGCCATATGAATAA-AATTGGGCCTAGTGGGCCATAAG
* *
70252333 AATATGAACTGGGCC-AGATGGGCCATTTGAATAAGATTGGGCCTAGTGGGCCATA
1 AATATGAACTGGGCCTA-ATGGGCCATATGAATAAAATTGGGCCTAGTGGGCCATA
70252388 TGCATGTATG
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
57 21 0.42
58 29 0.58
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (57 bp):
AATATGAACTGGGCCTAATGGGCCATATGAATAAAATTGGGCCTAGTGGGCCATAAG
Found at i:70261935 original size:124 final size:124
Alignment explanation
Indices: 70261713--70261937 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
70261703 GAATTATGTG
* * ** * * *
70261713 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
70261778 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
70261837 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
70261902 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
70261938 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:70262060 original size:80 final size:80
Alignment explanation
Indices: 70261894--70262061 Score: 189
Period size: 80 Copynumber: 2.1 Consensus size: 80
70261884 CAATTGAATG
* * *
70261894 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
70261959 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** * *
70261974 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
70262038 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
70262054 ATATCCGG
1 ATATCCGG
70262062 TTGTATTCCG
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
79 5 0.07
80 68 0.93
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:70264615 original size:29 final size:28
Alignment explanation
Indices: 70264564--70264648 Score: 116
Period size: 28 Copynumber: 3.0 Consensus size: 28
70264554 AGCATGACTG
*
70264564 TAAAAGTGATTGGGCCTAGTGGGCCATA
1 TAAATGTGATTGGGCCTAGTGGGCCATA
*
70264592 TAAATGTGATTTGGGCCTAATGGGCCATA
1 TAAATGTGA-TTGGGCCTAGTGGGCCATA
* * *
70264621 TGAATGAGATTGGGCCTAGTAGGCCATA
1 TAAATGTGATTGGGCCTAGTGGGCCATA
70264649 GGCATGTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 25 0.50
29 25 0.50
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (28 bp):
TAAATGTGATTGGGCCTAGTGGGCCATA
Found at i:70264645 original size:28 final size:28
Alignment explanation
Indices: 70264571--70264648 Score: 111
Period size: 29 Copynumber: 2.8 Consensus size: 28
70264561 CTGTAAAAGT
*
70264571 GATTGGGCCTAGTGGGCCATATAAATGT
1 GATTGGGCCTAGTGGGCCATATAAATGA
* *
70264599 GATTTGGGCCTAATGGGCCATATGAATGA
1 GA-TTGGGCCTAGTGGGCCATATAAATGA
*
70264628 GATTGGGCCTAGTAGGCCATA
1 GATTGGGCCTAGTGGGCCATA
70264649 GGCATGTATG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 19 0.43
29 25 0.57
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GATTGGGCCTAGTGGGCCATATAAATGA
Found at i:70280421 original size:22 final size:21
Alignment explanation
Indices: 70280374--70280422 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
70280364 CATCTTGCAG
**
70280374 CACGGGCGTGTCCTAGGGTCA
1 CACGGGCGTGTCCTAGGACCA
*
70280395 CACGGGCGTGTCCCTTGGACCA
1 CACGGGCGTGT-CCTAGGACCA
70280417 CACGGG
1 CACGGG
70280423 AATGTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.14, C:0.33, G:0.37, T:0.16
Consensus pattern (21 bp):
CACGGGCGTGTCCTAGGACCA
Found at i:70286388 original size:37 final size:37
Alignment explanation
Indices: 70286342--70286423 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
70286332 AACCTTTAGT
* *
70286342 TCGGG-CTTACCCGGAAAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGAAAAAATCTCCACACGTAGTCA
* *
70286378 TCGGGTCTTACCCGGACATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCCGGAAAAAATCTCCACACGTAGTCA
70286415 TCGGGTCTT
1 TCGGGTCTT
70286424 TAGAGCTCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 5 0.12
37 36 0.88
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (37 bp):
TCGGGTCTTACCCGGAAAAAATCTCCACACGTAGTCA
Found at i:70286610 original size:47 final size:47
Alignment explanation
Indices: 70286541--70287411 Score: 1116
Period size: 47 Copynumber: 18.3 Consensus size: 47
70286531 CCCTTCGGGA
* * *
70286541 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
70286588 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
70286635 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
70286682 CTTATCACATATATACACTTTCACACTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
70286729 CTTATCACATATATGCACTTTCACATTCATCACATTGCCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
70286776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
70286823 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
70286870 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
70286917 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
70286964 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
70287011 CTTATCACATATATACACTTTCACATTCAT--CA-----CA-TCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
70287049 CTCA-CATATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* ** *
70287095 CTTATCACATATATGCACTTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACAC-TT-TCAC--AT-T-CA---TCACATT-GGC-CAT---TC----GGC
*
70287160 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
** *
70287207 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
70287254 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
70287301 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
70287348 CTTATCACATATATACACTTTCATACATAT-TTCACACTAGCCATTCGGC
1 CTTATCACATATATACACTTTC--ACAT-TCATCACATTGGCCATTCGGC
* *
70287397 TTTACCACATATATA
1 CTTATCACATATATA
70287412 TATCTCATAC
Statistics
Matches: 733, Mismatches: 60, Indels: 60
0.86 0.07 0.07
Matches are distributed among these distances:
37 23 0.03
38 3 0.00
39 6 0.01
40 2 0.00
44 2 0.00
45 5 0.01
46 3 0.00
47 591 0.81
48 1 0.00
49 37 0.05
50 1 0.00
51 3 0.00
52 1 0.00
53 2 0.00
54 3 0.00
55 1 0.00
56 13 0.02
57 1 0.00
58 3 0.00
59 2 0.00
60 1 0.00
61 2 0.00
63 4 0.01
64 2 0.00
65 21 0.03
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:70286619 original size:25 final size:25
Alignment explanation
Indices: 70286591--70286669 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
70286581 ACTCGGCCTT
*
70286591 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
70286616 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
70286638 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
70286663 ATCACAT
1 ATCACAT
70286670 GGGCCATTCG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:70286644 original size:22 final size:22
Alignment explanation
Indices: 70286616--70286691 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
70286606 TTTCACATTC
70286616 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
70286638 ATCACATATATGCACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
*
70286662 CATCACATGGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
70286685 ATCACAT
1 ATCACAT
70286692 ATATACACTT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 18 0.45
23 6 0.15
24 5 0.12
25 11 0.28
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:70287056 original size:35 final size:36
Alignment explanation
Indices: 70287015--70287086 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 36
70287005 TTCGGCCTTA
*
70287015 TCAC-ATATATACACTTTCACATTCATCACATCGGC
1 TCACAATATATACACTCTCACATTCATCACATCGGC
70287050 TCACATATATATACACTCTCACATTCATCACATCGGC
1 TCACA-ATATATACACTCTCACATTCATCACATCGGC
70287087 CATTAGGCCT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 4 0.12
37 30 0.88
ACGTcount: A:0.32, C:0.32, G:0.06, T:0.31
Consensus pattern (36 bp):
TCACAATATATACACTCTCACATTCATCACATCGGC
Found at i:70287138 original size:16 final size:18
Alignment explanation
Indices: 70287096--70287133 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
70287086 CCATTAGGCC
70287096 TTATCACATATATGCACT
1 TTATCACATATATGCACT
70287114 TTATCACATATATGCACT
1 TTATCACATATATGCACT
70287132 TT
1 TT
70287134 CACATTCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (18 bp):
TTATCACATATATGCACT
Found at i:70287161 original size:149 final size:154
Alignment explanation
Indices: 70286965--70287274 Score: 477
Period size: 149 Copynumber: 2.0 Consensus size: 154
70286955 CCATTAGGCC
* *
70286965 TTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
1 TTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
* *
70287030 TTCACATTCAT-CA-CA-TCGG-CTCA-CATATATATACACTCTCACATTCATCACATCGGCCAT
66 TTCACATTCATACAGCATTCGGCCTCATCACATATATACACTCTCACATTCATCACATCAGCCAT
70287090 TAGGCCTTATCACATATATGCACT
131 TAGGCCTTATCACATATATGCACT
*
70287114 TTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACT
1 TTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
* *
70287179 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCA
66 TTCACATTCAT-ACA---G-CATTCGGCCTCATCACATATATACACTCTCACATTCATCACATCA
70287244 GCCATTAGGCCTTATCACATATATGCACT
126 GCCATTAGGCCTTATCACATATATGCACT
70287273 TT
1 TT
70287275 CACATTCATC
Statistics
Matches: 144, Mismatches: 7, Indels: 10
0.89 0.04 0.06
Matches are distributed among these distances:
149 73 0.51
151 2 0.01
156 2 0.01
157 4 0.03
158 3 0.02
159 60 0.42
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (154 bp):
TTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATACAGCATTCGGCCTCATCACATATATACACTCTCACATTCATCACATCAGCCAT
TAGGCCTTATCACATATATGCACT
Found at i:70287172 original size:196 final size:200
Alignment explanation
Indices: 70286918--70287321 Score: 681
Period size: 196 Copynumber: 2.0 Consensus size: 200
70286908 CCATTCGGCC
70286918 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACT
70286983 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT-C
66 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCC
*
70287047 -GG-CTCA-CATATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
131 AGGCCTCATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
70287109 GCACT
196 GCACT
*
70287114 TTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACT
70287179 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCA
66 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT--
* * *
70287244 GCCATTAGGCCTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
129 -CC---AGGCCTCATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCAC
70287309 ATATATGCACT
190 ATATATGCACT
70287320 TT
1 TT
70287322 CACATTCATC
Statistics
Matches: 193, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
196 127 0.66
200 1 0.01
204 2 0.01
205 3 0.02
206 60 0.31
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (200 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACT
TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCC
AGGCCTCATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
GCACT
Found at i:70290387 original size:28 final size:28
Alignment explanation
Indices: 70290356--70290455 Score: 83
Period size: 28 Copynumber: 3.5 Consensus size: 28
70290346 CTGACTGATT
*
70290356 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * * ** *
70290384 TCGCATACATAGTGCTTCAACTACTGATC
1 TCGCACACATAGTGC-TCGATTAAAGAAC
* * *
70290413 TGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* *
70290441 TTGCACACACAGTGC
1 TCGCACACATAGTGC
70290456 CTCATAATTC
Statistics
Matches: 53, Mismatches: 18, Indels: 2
0.73 0.25 0.03
Matches are distributed among these distances:
28 32 0.60
29 21 0.40
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:70290423 original size:57 final size:56
Alignment explanation
Indices: 70290328--70290456 Score: 152
Period size: 57 Copynumber: 2.3 Consensus size: 56
70290318 GAAACACACT
* *
70290328 TCGCATACATAGTGCCCACTGACTGATTTCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCATACATAGTGCCAACTGACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
* * * *
70290384 TCGCATACATAGTGCTTCAACT-ACTGATCTGGCACACATAGTGCTCGGTTGAAGAAC
1 TCGCATACATAGTGC--CAACTGACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
* * *
70290441 TTGCACACACAGTGCC
1 TCGCATACATAGTGCC
70290457 TCATAATTCT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
55 1 0.02
56 15 0.24
57 42 0.68
58 4 0.06
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (56 bp):
TCGCATACATAGTGCCAACTGACTGATCTCGCACACATAGCGCTCGATTAAAGAAC
Found at i:70290520 original size:40 final size:40
Alignment explanation
Indices: 70290498--70290866 Score: 612
Period size: 40 Copynumber: 9.2 Consensus size: 40
70290488 TTCGCCCGAA
* *
70290498 TATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGA
1 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
* *
70290538 TATATCACTAGCACGAATGCTCTTCGGAAGTTAGTCCGAT
1 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
*
70290578 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGA
1 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
* * * *
70290618 TATATCACTAGCACGAATGCTCTTCGAAACTTAGCCCAGA
1 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
* *
70290658 TATATCACTAGCACGAATGCTCTTCGGAAGTTAGTCCGAT
1 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
70290698 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
1 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
70290738 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
1 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
* *
70290778 TATATCACTAGCACAAATGCTCTTCGGAACTTAGTCTGGT
1 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
*
70290818 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGA
1 TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
70290858 TATATCACT
1 TATATCACT
70290867 CTCAATTCTC
Statistics
Matches: 306, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 306 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (40 bp):
TATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGT
Found at i:70292380 original size:47 final size:47
Alignment explanation
Indices: 70292311--70292956 Score: 1022
Period size: 47 Copynumber: 13.7 Consensus size: 47
70292301 CCCTTCGGGA
* * * * *
70292311 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70292358 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70292405 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70292452 CTTATCACATATATACACTTTCACACTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70292499 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70292546 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70292593 CTTGTCACATATGTACACTTTCACAATCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70292640 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70292687 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70292734 CTTGTCACATATATGCACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70292781 CTTATCACATATATGCACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70292828 CTTATCACATATATGCACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70292875 CTTATCACATATATGCACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70292922 CTTATCACATATATGCACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
70292957 TATACACTTT
Statistics
Matches: 569, Mismatches: 30, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 569 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70292389 original size:25 final size:25
Alignment explanation
Indices: 70292361--70292580 Score: 76
Period size: 25 Copynumber: 9.3 Consensus size: 25
70292351 ACTCGGCCTT
*
70292361 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
70292386 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
70292408 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
** * * *
70292433 ATCAC--ATGGGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
* *
70292455 ATCACATATATACACTTTCACACTC
1 ATCACATATATGCACTTTCACATTC
** ** *
70292480 ATCAC--ATCGGC-CATTAGACCTT-
1 ATCACATATATGCAC-TTTCACATTC
*
70292502 ATCACATTTATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
** * * *
70292527 ATCAC--ATCGGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
*
70292549 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
70292574 ATCACAT
1 ATCACAT
70292581 CGGCCATTAG
Statistics
Matches: 129, Mismatches: 46, Indels: 40
0.60 0.21 0.19
Matches are distributed among these distances:
22 35 0.27
23 26 0.20
24 26 0.20
25 42 0.33
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:70292414 original size:22 final size:22
Alignment explanation
Indices: 70292386--70292461 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
70292376 TTTCACATTC
70292386 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
70292408 ATCACATATATGCACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
*
70292432 CATCACATGGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
70292455 ATCACAT
1 ATCACAT
70292462 ATATACACTT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 18 0.45
23 6 0.15
24 5 0.12
25 11 0.28
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:70292967 original size:24 final size:25
Alignment explanation
Indices: 70292925--70292980 Score: 96
Period size: 24 Copynumber: 2.3 Consensus size: 25
70292915 ATTCGGCCTT
*
70292925 ATCACATATATGCACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
70292950 ATCACAT-TATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
70292974 ATCACAT
1 ATCACAT
70292981 CGGCCATTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 23 0.77
25 7 0.23
ACGTcount: A:0.34, C:0.29, G:0.02, T:0.36
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:70292974 original size:71 final size:72
Alignment explanation
Indices: 70292878--70293027 Score: 275
Period size: 71 Copynumber: 2.1 Consensus size: 72
70292868 ATTAGGCCTT
* *
70292878 ATCACATATATGCACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATGCACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTT
70292943 CACATTC
66 CACATTC
70292950 ATCACAT-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTT
70293014 CACATTC
66 CACATTC
70293021 ATCACAT
1 ATCACAT
70293028 CGGCCATTAG
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 69 0.91
72 7 0.09
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.33
Consensus pattern (72 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTT
CACATTC
Found at i:70292985 original size:118 final size:118
Alignment explanation
Indices: 70292831--70293075 Score: 445
Period size: 118 Copynumber: 2.1 Consensus size: 118
70292821 ATTAGGCCTT
*
70292831 ATCACATATATGCACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTT
1 ATCACAT-TATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTT
*
70292896 CACATTCATCACATCGGCCATTCGGCCTTATCACATATATGCACTTTCACATTC
65 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTCACATTC
*
70292950 ATCACATTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTC
1 ATCACATTATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTC
*
70293015 ACATTCATCACATCGGCCATTAGGCCTTATCACATGTATGCACTTTCACATTC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTCACATTC
70293068 ATCACATT
1 ATCACATT
70293076 GGCCATTCGG
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
118 115 0.94
119 7 0.06
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (118 bp):
ATCACATTATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTCACATTC
Found at i:70292988 original size:165 final size:166
Alignment explanation
Indices: 70292784--70293109 Score: 591
Period size: 165 Copynumber: 2.0 Consensus size: 166
70292774 ATTAGGCCTT
*
70292784 ATCACATATATGCACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTCT
1 ATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTCT
70292849 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTCACATTCATCACATCGGC
*
70292914 CATTCGGCCTTATCACATATATGCACTTTCACATTC
131 CATTCGGCCTTATCACATATATACACTTTCACATTC
* *
70292950 ATCACAT-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTT
1 ATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTCT
* *
70293014 CACATTCATCACATCGGCCATTAGGCCTTATCACATGTATGCACTTTCACATTCATCACATTGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTCACATTCATCACATCGGC
70293079 CATTCGGCCTTATCACATATATACACTTTCA
131 CATTCGGCCTTATCACATATATACACTTTCA
70293110 TACATATTTC
Statistics
Matches: 154, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
165 147 0.95
166 7 0.05
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (166 bp):
ATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTCT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTCACATTCATCACATCGGC
CATTCGGCCTTATCACATATATACACTTTCACATTC
Found at i:70293014 original size:47 final size:47
Alignment explanation
Indices: 70292950--70293109 Score: 268
Period size: 47 Copynumber: 3.4 Consensus size: 47
70292940 TTTCACATTC
70292950 ATCACAT-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
70292996 ATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* * * *
70293043 ATCACATGTATGCACTTTCACATTCATCACATTGGCCATTCGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
70293090 ATCACATATATACACTTTCA
1 ATCACATATATACACTTTCA
70293110 TACATATTTC
Statistics
Matches: 107, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 7 0.07
47 100 0.93
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:70298211 original size:20 final size:20
Alignment explanation
Indices: 70298186--70298227 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
70298176 TTTCTAAAAA
* *
70298186 AACAAATGAATGAATAAGTG
1 AACAAATGAATCAATAAATG
70298206 AACAAATGAATCAATAAATG
1 AACAAATGAATCAATAAATG
70298226 AA
1 AA
70298228 ATTGGGGCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.60, C:0.07, G:0.14, T:0.19
Consensus pattern (20 bp):
AACAAATGAATCAATAAATG
Found at i:70304322 original size:3 final size:3
Alignment explanation
Indices: 70304314--70304349 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
70304304 TTATTCAATC
70304314 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
70304350 AAAGATTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:70306712 original size:37 final size:37
Alignment explanation
Indices: 70306554--70306701 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
70306544 AGCTCAGATG
* * *
70306554 AAATCTCCACACGAAGTTATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
70306591 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
70306628 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
70306665 TAGTCTCCACACGTAGTCATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
70306702 TAGTCACCAC
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:70306721 original size:74 final size:74
Alignment explanation
Indices: 70306554--70306729 Score: 219
Period size: 74 Copynumber: 2.4 Consensus size: 74
70306544 AGCTCAGATG
* * *
70306554 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCT
1 AAATCACCACAC-ATAGTCATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCAGGTCT
70306618 TACCCGGACA
65 TACCCGGACA
* * * * *
70306628 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAGTCTCCACACGTAGTCATCAGGTCTT
1 AAATCACCACACATAGTCATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCAGGTCTT
70306693 ACCCGGACA
66 ACCCGGACA
* * * * *
70306702 TAGTCACCACATATGGTCATCTGGTCTT
1 AAATCACCACACATAGTCATCGGGTCTT
70306730 TAATCCCAGG
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
74 88 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (74 bp):
AAATCACCACACATAGTCATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCAGGTCTT
ACCCGGACA
Found at i:70306958 original size:46 final size:46
Alignment explanation
Indices: 70306890--70307026 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
70306880 TATATATACA
* * * * *
70306890 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGACTTTACCACATATC
* *
70306936 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGACTTTACCACATATC
* *
70306982 TATCTCATACACATTTCGCATTAGCCATTCGACCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGACTTTACCACATAT
70307027 ATACATGTTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.27, C:0.31, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGACTTTACCACATATC
Found at i:70307065 original size:47 final size:47
Alignment explanation
Indices: 70307000--70307186 Score: 275
Period size: 47 Copynumber: 4.0 Consensus size: 47
70306990 ACACATTTCG
* * * * **
70307000 CATTAGCCATTCGACCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
70307047 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
70307094 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
70307141 CATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATC
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
70307187 GCCTTATCAC
Statistics
Matches: 131, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:70307191 original size:33 final size:33
Alignment explanation
Indices: 70307154--70307219 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
70307144 TGGCCATTCG
70307154 GCCTTATCACACATACGCGTGTTCACATTCATC
1 GCCTTATCACACATACGCGTGTTCACATTCATC
*
70307187 GCCTTATCACACATACGTGTGTTCACATTCATC
1 GCCTTATCACACATACGCGTGTTCACATTCATC
70307220 ACATTGGCCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (33 bp):
GCCTTATCACACATACGCGTGTTCACATTCATC
Found at i:70307238 original size:47 final size:48
Alignment explanation
Indices: 70307187--70307321 Score: 141
Period size: 47 Copynumber: 2.8 Consensus size: 48
70307177 CACATTCATC
* *
70307187 GCCTTATCACACATACGTGT-GTTCACATTCATCACATTGGCCATTCG
1 GCCTTATCACACATACATATAGTTCACATTCATCACATTGGCCATTCG
* * *
70307234 GCCTTATCACGCATATATATACAGGTTCACATTCATCACATTTGCCATTCG
1 GCCTTATCACACATACATAT--A-GTTCACATTCATCACATTGGCCATTCG
* * *
70307285 GCCTTAT--CTCATATATACACGTTCACATTCATCACAT
1 GCCTTATCACACATACATATA-GTTCACATTCATCACAT
70307322 AAAATCCTAA
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
47 34 0.45
49 9 0.12
51 33 0.43
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (48 bp):
GCCTTATCACACATACATATAGTTCACATTCATCACATTGGCCATTCG
Found at i:70307267 original size:51 final size:47
Alignment explanation
Indices: 70307207--70307321 Score: 167
Period size: 51 Copynumber: 2.4 Consensus size: 47
70307197 ACATACGTGT
*
70307207 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACAG
1 GTTCACATTCATCACATTGGCCATTCGGCCTTAT--CGC--ATATATACAC
* *
70307258 GTTCACATTCATCACATTTGCCATTCGGCCTTATCTCATATATACAC
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATACAC
70307305 GTTCACATTCATCACAT
1 GTTCACATTCATCACAT
70307322 AAAATCCTAA
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
47 26 0.43
49 2 0.03
51 33 0.54
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCGCATATATACAC
Found at i:70307316 original size:131 final size:127
Alignment explanation
Indices: 70307079--70307317 Score: 336
Period size: 131 Copynumber: 1.9 Consensus size: 127
70307069 CATATATGCA
*
70307079 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCACAT
1 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACGTGTTCACATTCATCACAT
* **
70307144 TGGCCATTCGGCCTTATCACACATACGCGTGTTCACATTCATCGCCTTATCACACATACGTG
66 TGGCCATTCGGCCTTATCACACATACACACGTTCACATTCATCGCCTTATCACACATACGTG
* *
70307206 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACAG-GTTCACATTCAT
1 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCA--C--ACATACAC-GTGTTCACATTCAT
* * * *
70307270 CACATTTGCCATTCGGCCTTATCTCATATATACACGTTCACATTCATC
61 CACATTGGCCATTCGGCCTTATCACACATACACACGTTCACATTCATC
70307318 ACATAAAATC
Statistics
Matches: 97, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
127 37 0.38
129 1 0.01
131 58 0.60
132 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.33
Consensus pattern (127 bp):
TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACGTGTTCACATTCATCACAT
TGGCCATTCGGCCTTATCACACATACACACGTTCACATTCATCGCCTTATCACACATACGTG
Found at i:70310447 original size:145 final size:144
Alignment explanation
Indices: 70310082--70310449 Score: 460
Period size: 145 Copynumber: 2.5 Consensus size: 144
70310072 GGGTGTCACA
* *
70310082 TAAACTTTCCTTTAAAATGACTTAAAAAAGAGATTTTTATTTTTTAAAATCTAAACTTTCTCATT
1 TAAACTTTCCTTTAAAAT-AC-TAAAAAACAAATTTTTA-TTTTTAAAATCTAAACTTTCT-ATT
* *
70310147 CTTTAAAAAAAAACTATTTTCCTTAAAGATTAAAGCTTTTATTTTGAAGTAGTTGAAAAAAATCA
62 TTTTAAAAAAAAACTATTTTCCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAAATCA
*
70310212 AAACATATTTTAAAGTTT
127 AAACATATTTTAAAATTT
*
70310230 TAAACTTTCCTTTAAAATACTAAAAAAAAACAAATTTTTATTTTTCAAAATCTAAACTTTC--TC
1 TAAACTTTCCTTTAAAATACT---AAAAAACAAATTTTTATTTTT-AAAATCTAAACTTTCTATT
*
70310293 TTTTAAAAAAAAA-TATTTTTCTTAAAGATTAAAGCTTTTACTTTT-AAATAGTTG-AAAAAATC
62 TTTTAAAAAAAAACTATTTTCCTTAAAGATTAAAGCTTTTA-TTTTGAAATAGTTGAAAAAAATC
*
70310355 AAAACTTTATTTTAAAATTT
126 AAAAC-ATATTTTAAAATTT
* * * *
70310375 TAGAA-TTTCCTTTAAAATAACTAAAAGATATATTTTTATTTGTTGAAATCTAAACTTTCTATTT
1 TA-AACTTTCCTTTAAAAT-ACTAAAAAACAAATTTTTATTT-TTAAAATCTAAACTTTCTATTT
*
70310439 TTTTAAAAAAA
63 TTTAAAAAAAA
70310450 TCAATTTTTT
Statistics
Matches: 195, Mismatches: 14, Indels: 25
0.83 0.06 0.11
Matches are distributed among these distances:
143 30 0.15
144 15 0.08
145 73 0.37
146 23 0.12
147 2 0.01
148 23 0.12
149 29 0.15
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.42
Consensus pattern (144 bp):
TAAACTTTCCTTTAAAATACTAAAAAACAAATTTTTATTTTTAAAATCTAAACTTTCTATTTTTT
AAAAAAAAACTATTTTCCTTAAAGATTAAAGCTTTTATTTTGAAATAGTTGAAAAAAATCAAAAC
ATATTTTAAAATTT
Found at i:70316496 original size:29 final size:29
Alignment explanation
Indices: 70316464--70316564 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
70316454 ATAGTGAATC
* * *
70316464 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAAATTTTAAACT
70316493 CGCACACTTAGTGCTATAGAA--TTAAACT
1 CGCACACTTAGTGCTATA-AATTTTAAACT
* *
70316521 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-AATTTTAAACT
70316551 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70316565 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
28 24 0.38
29 18 0.29
30 21 0.33
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATAAATTTTAAACT
Found at i:70321590 original size:46 final size:46
Alignment explanation
Indices: 70321537--70321712 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
70321527 TATTTGGGCA
70321537 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
70321583 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
70321630 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
70321676 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70321713 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:70321692 original size:93 final size:93
Alignment explanation
Indices: 70321533--70321704 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70321523 GGGATATTTG
* *
70321533 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
70321598 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
70321626 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
70321691 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
70321705 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:70324680 original size:15 final size:15
Alignment explanation
Indices: 70324660--70324728 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
70324650 GTATCTTGGG
70324660 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
70324675 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
70324690 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
70324705 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
70324720 TTTCTTTAT
1 TTTCTTTAT
70324729 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:70324729 original size:30 final size:30
Alignment explanation
Indices: 70324651--70324738 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
70324641 CATAGTATCG
* * * *
70324651 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
70324681 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
70324711 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
70324739 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:70327176 original size:46 final size:46
Alignment explanation
Indices: 70327123--70327298 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
70327113 TATTTGGGCA
70327123 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
70327169 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
70327216 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
70327262 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70327299 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:70327278 original size:93 final size:93
Alignment explanation
Indices: 70327119--70327290 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70327109 GGGATATTTG
* *
70327119 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
70327184 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
70327212 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
70327277 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
70327291 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:70332808 original size:30 final size:29
Alignment explanation
Indices: 70332714--70332815 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
70332704 TATAGTGAAT
* * *
70332714 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
70332743 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
70332771 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
70332801 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
70332816 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:70335412 original size:49 final size:49
Alignment explanation
Indices: 70335344--70335466 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
70335334 TACATATATG
*
70335344 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
70335393 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
70335442 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
70335467 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:70335612 original size:37 final size:37
Alignment explanation
Indices: 70335569--70335646 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
70335559 GTTCCGGGCG
70335569 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
70335606 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
70335643 AGAC
1 AGAC
70335647 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:70339519 original size:80 final size:79
Alignment explanation
Indices: 70339405--70339621 Score: 282
Period size: 80 Copynumber: 2.8 Consensus size: 79
70339395 ACCCAAGTAT
* *
70339405 CTTC-GAT-TTAGCCGGATATA-ACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGATCTTAGCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG-
*
70339467 C-ACTAGCATAAATGC
64 CAACTAGCACAAATGC
* * *
70339482 CTTCGGGTCTTAGCCCGGATATAGTCGCTAGTACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGATCTTAG-CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
*
70339547 AACTCGCACAAATGC
65 AACTAGCACAAATGC
* * *
70339562 CTTCGGATCTTAGTCGGATATAGTCACTAGCACAAAAGCCTTC-GGACTTAGCCCGGATAT
1 CTTCGGATCTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
70339622 CATTCGAATA
Statistics
Matches: 122, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
77 4 0.03
78 18 0.15
79 31 0.25
80 68 0.56
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTAGCACAAATGC
Found at i:70339595 original size:39 final size:40
Alignment explanation
Indices: 70339432--70339621 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
70339422 ATAACAACTC
70339432 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
70339472 GCATAAATGCCTTCGGGTCTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
70339512 GTACAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTA
* *
70339552 GCACAAATGCCTTCGGATCTTAG-TCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
70339591 GCACAAAAGCCTTC-GGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
70339622 CATTCGAATA
Statistics
Matches: 133, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
38 6 0.05
39 33 0.25
40 94 0.71
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
Found at i:70347724 original size:40 final size:40
Alignment explanation
Indices: 70347676--70347867 Score: 269
Period size: 40 Copynumber: 4.8 Consensus size: 40
70347666 ATAACAACTC
70347676 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
70347716 GCATAAATGCCTTCGGGTCTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
70347756 GTACAAATGCCTTCGGGTCTTAGCCCGGATATAG-CAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTA
* **
70347796 GCACAAATGCCTTCGGATCTTAGTTCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * * *
70347836 GCACAAAAGCCTTCAGGACTTAGCCCAGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
70347868 CATTCGAATA
Statistics
Matches: 132, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 130 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
Found at i:70358977 original size:40 final size:40
Alignment explanation
Indices: 70358869--70359078 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
70358859 CGGGATTTAA
* * * * *
70358869 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
70358909 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70358949 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70358989 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70359029 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70359069 CCGGATATAT
1 CCGGATATAT
70359079 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:70366196 original size:24 final size:24
Alignment explanation
Indices: 70365953--70366194 Score: 423
Period size: 24 Copynumber: 10.1 Consensus size: 24
70365943 GCAAAGACCA
70365953 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
70365977 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
70366001 TATGGCACTATGTGTGCGA-TTAC
1 TATGGCACTATGTGTGCGATTTAC
70366024 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
70366048 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
70366072 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
70366096 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
70366120 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
70366144 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
70366168 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
70366192 TAT
1 TAT
70366195 AGTCACATTC
Statistics
Matches: 211, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
23 22 0.10
24 189 0.90
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:70374202 original size:24 final size:24
Alignment explanation
Indices: 70373958--70374200 Score: 432
Period size: 24 Copynumber: 10.1 Consensus size: 24
70373948 GCAAAGACCA
70373958 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
70373982 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
70374006 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
70374030 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
70374054 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
70374078 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
70374102 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
70374126 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
70374150 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
70374174 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
70374198 TAT
1 TAT
70374201 AGTCACATTC
Statistics
Matches: 213, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 213 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:70377550 original size:40 final size:40
Alignment explanation
Indices: 70377442--70377651 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
70377432 CGGGATTTAA
* * * * *
70377442 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
70377482 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70377522 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70377562 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70377602 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
70377642 CCGGATATAT
1 CCGGATATAT
70377652 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:70380024 original size:27 final size:27
Alignment explanation
Indices: 70379994--70380135 Score: 160
Period size: 27 Copynumber: 5.3 Consensus size: 27
70379984 CATGACAACT
*
70379994 AAGAATAGCCTTTCTGGTGAACTCTGA
1 AAGAATAGCCTTTTTGGTGAACTCTGA
* *
70380021 AAGAATAGCATTTTTGGTGAACTTTGA
1 AAGAATAGCCTTTTTGGTGAACTCTGA
* * *
70380048 AAGAATAGCCATTGTGGTGAACTCTTA
1 AAGAATAGCCTTTTTGGTGAACTCTGA
*
70380075 AAGAATAGCCTTTTTGGTGAACTTTG-
1 AAGAATAGCCTTTTTGGTGAACTCTGA
* * * * *
70380101 AATAATGGCCTTTATGGCGAACTATGA
1 AAGAATAGCCTTTTTGGTGAACTCTGA
*
70380128 AGGAATAG
1 AAGAATAG
70380136 TCTGTGTGGT
Statistics
Matches: 94, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 21 0.22
27 73 0.78
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (27 bp):
AAGAATAGCCTTTTTGGTGAACTCTGA
Found at i:70380078 original size:54 final size:54
Alignment explanation
Indices: 70379994--70380102 Score: 182
Period size: 54 Copynumber: 2.0 Consensus size: 54
70379984 CATGACAACT
*
70379994 AAGAATAGCCTTTCTGGTGAACTCTGAAAGAATAGCATTTTTGGTGAACTTTGA
1 AAGAATAGCCATTCTGGTGAACTCTGAAAGAATAGCATTTTTGGTGAACTTTGA
* * *
70380048 AAGAATAGCCATTGTGGTGAACTCTTAAAGAATAGCCTTTTTGGTGAACTTTGA
1 AAGAATAGCCATTCTGGTGAACTCTGAAAGAATAGCATTTTTGGTGAACTTTGA
70380102 A
1 A
70380103 TAATGGCCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (54 bp):
AAGAATAGCCATTCTGGTGAACTCTGAAAGAATAGCATTTTTGGTGAACTTTGA
Found at i:70388537 original size:120 final size:119
Alignment explanation
Indices: 70388306--70388563 Score: 353
Period size: 120 Copynumber: 2.2 Consensus size: 119
70388296 TCGAATGATG
* *
70388306 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGGTTAAGTCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTTG
* **
70388371 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 TGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAA
* *
70388425 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGGTTAAGT-CCGAAGGCATT
* *
70388489 TGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
64 TGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAA
* *
70388545 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
70388564 TACGTGATTT
Statistics
Matches: 124, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
119 56 0.45
120 66 0.53
121 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:70388544 original size:40 final size:40
Alignment explanation
Indices: 70388306--70388530 Score: 357
Period size: 40 Copynumber: 5.7 Consensus size: 40
70388296 TCGAATGATG
* * * *
70388306 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
70388346 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
70388385 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
70388425 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
70388465 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
70388506 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
70388531 AACGAGTAGC
Statistics
Matches: 176, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
39 28 0.16
40 146 0.83
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70391772 original size:40 final size:38
Alignment explanation
Indices: 70391728--70391897 Score: 198
Period size: 38 Copynumber: 4.4 Consensus size: 38
70391718 GAATCCAGTC
* * * *
70391728 ACCAGCACAAAACCTGTGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CTCGGATATAAT
* * *
70391768 ACCAGCACTAAGCCTCCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACTCGGATATAAT
* *
70391806 ACCAACACGAAGCCTGCGGGATTTAACTCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACTCGGATATAAT
70391844 ACCAGCACGAAGCCTGCGGGATTTAAC-CTGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACTC-GGATATAAT
* * *
70391882 TCCAGCATGTAGCCTG
1 ACCAGCACGAAGCCTG
70391898 GGGGTCTTTA
Statistics
Matches: 113, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
37 1 0.01
38 90 0.80
39 5 0.04
40 17 0.15
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACTCGGATATAAT
Found at i:70391896 original size:76 final size:78
Alignment explanation
Indices: 70391740--70391910 Score: 220
Period size: 76 Copynumber: 2.2 Consensus size: 78
70391730 CAGCACAAAA
* *
70391740 CCTGTGGGACTTTAAGCTCAGATATAATACCAGCACTAAGCCTCCGGGATTTAACCCGGATATAA
1 CCTGCGGGACTTTAAGCTCAGATATAATACCAGCACGAAGCCTCCGGGATTTAACCCGGATATAA
70391805 TACCAACACGAAG
66 TACCAACACGAAG
* * * *
70391818 CCTGCGGGA-TTTAA-CTCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCTGGATATAA
1 CCTGCGGGACTTTAAGCTCAGATATAATACCAGCACGAAGCCTCCGGGATTTAACCCGGATATAA
* * * *
70391881 TTCCAGCATGTAG
66 TACCAACACGAAG
* *
70391894 CCTGGGGGTCTTTAAGC
1 CCTGCGGGACTTTAAGC
70391911 CTGGATACAC
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
76 60 0.76
77 10 0.13
78 9 0.11
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.25
Consensus pattern (78 bp):
CCTGCGGGACTTTAAGCTCAGATATAATACCAGCACGAAGCCTCCGGGATTTAACCCGGATATAA
TACCAACACGAAG
Found at i:70396755 original size:47 final size:47
Alignment explanation
Indices: 70396659--70396861 Score: 277
Period size: 47 Copynumber: 4.3 Consensus size: 47
70396649 TGCACACTTT
* * *
70396659 TCACAATTGGTCATTCGGCCTTATCACATAT--TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACACTTTCACAT-TCA
** * * **
70396705 TCACATTAACCATTCGGCCTTATCTCATGTATGCACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
70396752 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
*
70396799 TCACATTTGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
70396846 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
70396862 ATCTTAAGCT
Statistics
Matches: 139, Mismatches: 15, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
45 21 0.15
46 5 0.04
47 113 0.81
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
Found at i:70396826 original size:22 final size:22
Alignment explanation
Indices: 70396751--70396826 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
70396741 TTTCACATTC
*
70396751 ATCACATTGGCCATTCGGCCTT
1 ATCACATTTGCCATTCGGCCTT
* * * *
70396773 ATCACATATACACACTTTC-ACATT
1 ATCACATTTGC-CA--TTCGGCCTT
70396797 CATCACATTTGCCATTCGGCCTT
1 -ATCACATTTGCCATTCGGCCTT
70396820 ATCACAT
1 ATCACAT
70396827 ATACACACTT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 18 0.45
23 5 0.12
24 5 0.12
25 12 0.30
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.33
Consensus pattern (22 bp):
ATCACATTTGCCATTCGGCCTT
Found at i:70400217 original size:43 final size:43
Alignment explanation
Indices: 70400159--70400247 Score: 135
Period size: 43 Copynumber: 2.1 Consensus size: 43
70400149 TAGTCAATTA
*
70400159 GGATTACCCACCCGGGCTAAATCATTTCTATA-TCGAAATCAAT
1 GGATTACCCACCCGGGCTAAATCATTTCTATACT-AAAATCAAT
* *
70400202 GGATTACCCATCCGGGCTAAATCCTTTCTATACTAAAATCAAT
1 GGATTACCCACCCGGGCTAAATCATTTCTATACTAAAATCAAT
70400245 GGA
1 GGA
70400248 ATGTGTTCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
43 41 0.98
44 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
GGATTACCCACCCGGGCTAAATCATTTCTATACTAAAATCAAT
Found at i:70407390 original size:46 final size:45
Alignment explanation
Indices: 70407336--70407503 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 45
70407326 TCTCGTAGCT
*
70407336 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGCC
* * * * **
70407382 GAAGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATTCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAGGCC
* * * *
70407428 GATGCCATGTCCCAGACATGGTCTTAAACTGGCTCTCATAAT-GTGGTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAGGCC
70407476 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
70407504 ATCTCACACA
Statistics
Matches: 99, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
46 49 0.49
47 29 0.29
48 20 0.20
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGCC
Found at i:70407453 original size:94 final size:92
Alignment explanation
Indices: 70407336--70407504 Score: 234
Period size: 94 Copynumber: 1.8 Consensus size: 92
70407326 TCTCGTAGCT
* * *
70407336 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACGT-CTCGAGGCCGAAGCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTAAACTGGCTCT-CATAAT-GAGGCCGAAGCATGTCCCAGACA
70407399 TGTCTTACACTAGCACTCATCTCAATTCC
64 TGTCTTACACTAGCACTCATCTCAATTCC
* * *
70407428 GATGCCATGTCCCAGACATGGTCTTAAACTGGCTCTCATAATGTGGTCGATGCATGTCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTAAACTGGCTCTCATAATGAGGCCGAAGCATGTCCCAGACA
70407493 TGTCTTACACTA
64 TGTCTTACACTA
70407505 TCTCACACAA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
92 4 0.06
93 14 0.21
94 47 0.70
95 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTAAACTGGCTCTCATAATGAGGCCGAAGCATGTCCCAGACATG
TCTTACACTAGCACTCATCTCAATTCC
Found at i:70407909 original size:30 final size:29
Alignment explanation
Indices: 70407850--70407909 Score: 68
Period size: 30 Copynumber: 2.0 Consensus size: 29
70407840 CATAATTGGG
* *
70407850 CAAAATGACCAATTTGCCCCTATACTTTTA
1 CAAAATGACCAATTTCCCCCGATA-TTTTA
70407880 CAAAATGACCAATTTATCCCCCGAT-TTTTA
1 CAAAATGACCAA-TT-TCCCCCGATATTTTA
70407910 TTGAATTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 17 0.65
31 2 0.08
32 7 0.27
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (29 bp):
CAAAATGACCAATTTCCCCCGATATTTTA
Found at i:70424039 original size:2 final size:2
Alignment explanation
Indices: 70424032--70424065 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
70424022 AATTGAACCC
70424032 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
70424066 AATTAAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:70431621 original size:35 final size:35
Alignment explanation
Indices: 70431582--70431656 Score: 141
Period size: 35 Copynumber: 2.1 Consensus size: 35
70431572 GCCAAAGAGA
70431582 AATATTGCAAACCAAGTGTTTGACTAAATGCTTTC
1 AATATTGCAAACCAAGTGTTTGACTAAATGCTTTC
*
70431617 AATATTGCAAACCAAGTGTTTGATTAAATGCTTTC
1 AATATTGCAAACCAAGTGTTTGACTAAATGCTTTC
70431652 AATAT
1 AATAT
70431657 ATTCTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (35 bp):
AATATTGCAAACCAAGTGTTTGACTAAATGCTTTC
Found at i:70435565 original size:46 final size:45
Alignment explanation
Indices: 70435515--70435690 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
70435505 TGGTTGAGCA
*
70435515 TCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** *
70435561 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GAA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
70435608 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
70435654 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70435691 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 68 0.61
47 32 0.29
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:70435673 original size:93 final size:93
Alignment explanation
Indices: 70435514--70435682 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
70435504 ATGGTTGAGC
* *
70435514 ATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
70435579 AGTCCGAGTTCGAGAGATGTAACTAGGA
66 AGTCCGAGTTCGAGAGATGTAACTAGGA
* * *
70435607 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
70435672 AGTCCGAGTTC
66 AGTCCGAGTTC
70435683 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGAGAGATGTAACTAGGA
Found at i:70439868 original size:49 final size:47
Alignment explanation
Indices: 70439748--70439923 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 47
70439738 CGAATGTGTT
* * * *
70439748 AGTGTAAGACCATGTCTGGGACATGTCATTGGCACAGA-GAGATGAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCA-ATG-GATG--AGCC
* * * * **
70439798 AGTGTAAGACCATGTCCGGGACATGGCGTCGTCCTCAATCTTGAT-AGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-ACTCAA--TGGATGAGCC
* *
70439847 AGTGTAAGACCATGTCTGGGACTTGGCATCGACTTAATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATGGATGAGCC
*
70439894 AGTGTAAGACCTTGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
70439924 AGCATTACAT
Statistics
Matches: 102, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
46 4 0.04
47 30 0.29
48 4 0.04
49 30 0.29
50 28 0.27
51 3 0.03
52 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCAATGGATGAGCC
Found at i:70441101 original size:21 final size:22
Alignment explanation
Indices: 70441062--70441102 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
70441052 TTGAATTGGT
*
70441062 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCATGTTGCCCCTCC
70441084 CACACGGGCATG-TGCCCCT
1 CACACGGGCATGTTGCCCCT
70441103 GTGGCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGGGCATGTTGCCCCTCC
Found at i:70441608 original size:11 final size:11
Alignment explanation
Indices: 70441592--70441623 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
70441582 TAAAGAAACT
70441592 TAACTAAAATA
1 TAACTAAAATA
70441603 TAACTAAAATA
1 TAACTAAAATA
*
70441614 TAACGAAAAT
1 TAACTAAAAT
70441624 GCCTAAGTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.62, C:0.09, G:0.03, T:0.25
Consensus pattern (11 bp):
TAACTAAAATA
Found at i:70443168 original size:20 final size:19
Alignment explanation
Indices: 70443130--70443185 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 19
70443120 CTATAAAGTT
*
70443130 AAAATTAAAGAAGTATTCA
1 AAAATTAAACAAGTATTCA
*
70443149 AAAATTAATACAAGTTTTCA
1 AAAATTAA-ACAAGTATTCA
70443169 AAAA-TAAA-AA-TATTCA
1 AAAATTAAACAAGTATTCA
70443185 A
1 A
70443186 TCATCCTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
16 6 0.18
17 2 0.06
18 1 0.03
19 11 0.33
20 13 0.39
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.29
Consensus pattern (19 bp):
AAAATTAAACAAGTATTCA
Found at i:70451630 original size:12 final size:12
Alignment explanation
Indices: 70451613--70451641 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
70451603 ACAGGTTTGG
70451613 CACGGCCTAGCA
1 CACGGCCTAGCA
70451625 CACGGCCTAGCA
1 CACGGCCTAGCA
70451637 CACGG
1 CACGG
70451642 GCGTGTGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.41, G:0.28, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:70456556 original size:50 final size:50
Alignment explanation
Indices: 70456497--70456730 Score: 254
Period size: 50 Copynumber: 4.7 Consensus size: 50
70456487 TTCGATCATG
* *
70456497 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
* * * * * * * *
70456547 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCG-TTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCACA
* * * * * *
70456598 TGTGTAGTATTAAGTGCAGGATACTACGTGTATCAGATGGTTAAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
* * * *
70456648 TGTGTAGTGCTAAGTGCAGACTACTACGTGTACTAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
*
70456698 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
70456731 TAGAGAGCTT
Statistics
Matches: 144, Mismatches: 37, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
49 3 0.02
50 106 0.74
51 34 0.24
52 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
Found at i:70456614 original size:51 final size:51
Alignment explanation
Indices: 70456467--70456625 Score: 160
Period size: 51 Copynumber: 3.1 Consensus size: 51
70456457 GTCGCATGGT
* * *
70456467 TACTAGGCGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGCAGGC
1 TACTACGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
** * * * * * *
70456518 TACTACATGTACCAGATTGA--TAGGTCGCATGTGTAGTACTAAGTGCAAGC
1 TACTACGCGTACCCG-TTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
* * * *
70456568 TACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTATTAAGTGCAGGA
1 TACTACGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
70456619 TACTACG
1 TACTACG
70456626 TGTATCAGAT
Statistics
Matches: 81, Mismatches: 24, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
49 3 0.04
50 35 0.43
51 40 0.49
52 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (51 bp):
TACTACGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
Found at i:70456650 original size:101 final size:101
Alignment explanation
Indices: 70456467--70456673 Score: 299
Period size: 101 Copynumber: 2.0 Consensus size: 101
70456457 GTCGCATGGT
* *
70456467 TACTAGGCGTACCCGTTAACTTCGATCATGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCA
1 TACTAGGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGATACTACATGTACCA
* * *
70456532 GATTGATAGGTCGCATGTGTAGTACTAAGTGCA-AGC
66 GATGGATAAGTCACATGTGTAGTACTAAGTGCAGA-C
* * * *
70456568 TACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTATTAAGTGCAGGATACTACGTGTATCA
1 TACTAGGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGATACTACATGTACCA
* *
70456633 GATGGTTAAGTCACATGTGTAGTGCTAAGTGCAGAC
66 GATGGATAAGTCACATGTGTAGTACTAAGTGCAGAC
70456669 TACTA
1 TACTA
70456674 CGTGTACTAG
Statistics
Matches: 94, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 93 0.99
102 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (101 bp):
TACTAGGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGATACTACATGTACCA
GATGGATAAGTCACATGTGTAGTACTAAGTGCAGAC
Found at i:70457577 original size:179 final size:180
Alignment explanation
Indices: 70457277--70457632 Score: 538
Period size: 179 Copynumber: 2.0 Consensus size: 180
70457267 TCCGAGAGCT
*
70457277 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTCAGATAGTGAAACAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTCAGACAGTGAAACAGGGGTA
*
70457342 TATTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTTAAAATTTTATGGTAAGAATA
66 TATTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAATA
* * * *
70457407 TATATGAGTCTA-TTTCTG-GGAAAATTAGCGG-TTTTCAATTTGGAGTATA
131 TATATAAGTCTAGTTTCAGAGG-AAATTAACGGATCTT-AATTTGGAGTATA
* * *
70457456 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGAACTGTCGGACAGTGAAATAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTCAGACAGTGAAACAGGGGTA
* * * ** *
70457521 TCTTTAATGAATAAACTGTACTTATTGGCTTGACCAAAAATTCTGAAAATTTTATGGTAATAATA
66 TATTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAATA
70457586 TATATAAGTCTAGTTTCAGAGGAAATTAACGGATCTTAATTTGGAGT
131 TATATAAGTCTAGTTTCAGAGGAAATTAACGGATCTTAATTTGGAGT
70457633 TTCATAGCTC
Statistics
Matches: 159, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
179 130 0.82
180 24 0.15
181 5 0.03
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (180 bp):
GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTCAGACAGTGAAACAGGGGTA
TATTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAATA
TATATAAGTCTAGTTTCAGAGGAAATTAACGGATCTTAATTTGGAGTATA
Found at i:70461745 original size:47 final size:48
Alignment explanation
Indices: 70461638--70461762 Score: 157
Period size: 48 Copynumber: 2.6 Consensus size: 48
70461628 GAAAATCGTA
*
70461638 GTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACGTG
1 GTGCTAAGTGGATATACCACGATTACACATATCGATACATGTAACGTG
* * *
70461686 GTGCTAAGTGGATATGTCGCA-G-TTACATATATCGATTCAT-TAACGTG
1 GTGCTAAGTGGATAT-AC-CACGATTACACATATCGATACATGTAACGTG
* *
70461733 GTGCTAAGTGGATATACCACGGTTAAACAT
1 GTGCTAAGTGGATATACCACGATTACACAT
70461763 GTAATGTGGT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
45 2 0.03
46 2 0.03
47 28 0.42
48 30 0.45
49 2 0.03
50 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (48 bp):
GTGCTAAGTGGATATACCACGATTACACATATCGATACATGTAACGTG
Found at i:70461781 original size:38 final size:38
Alignment explanation
Indices: 70461730--70461802 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
70461720 ATTCATTAAC
70461730 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAT
* * *
70461768 GTGGTGCTAAGTGGATATGCCATGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGT
70461803 TAACCTGAGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAT
Found at i:70467824 original size:29 final size:26
Alignment explanation
Indices: 70467777--70467835 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
70467767 AATTTCATTT
70467777 ATTTCACATTTAAACCCCTCAATTTGCAC
1 ATTTCACATTTAAACCCCT--ATTTG-AC
*
70467806 ATTTCACAATTT-AATCCCTATTTGAC
1 ATTTCAC-ATTTAAACCCCTATTTGAC
70467832 ATTT
1 ATTT
70467836 TTGTCAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 5 0.18
29 13 0.46
30 4 0.14
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (26 bp):
ATTTCACATTTAAACCCCTATTTGAC
Found at i:70479374 original size:39 final size:39
Alignment explanation
Indices: 70479320--70479394 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
70479310 TTGCCCTATG
** *
70479320 AACTCACCAATGCCATGCCTTGGGATTGTCTTACATAGT
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATAGT
* *
70479359 AACTCATCAATGCCATGTCTTGACATGGTCTTACAT
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACAT
70479395 GATTTCCTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (39 bp):
AACTCACCAATGCCATGCCTTGACATGGTCTTACATAGT
Found at i:70479429 original size:54 final size:55
Alignment explanation
Indices: 70479354--70479463 Score: 161
Period size: 54 Copynumber: 2.0 Consensus size: 55
70479344 ATTGTCTTAC
* *
70479354 ATAGTAACTCATCAATGCCATGTCTT-GACATGGTCTTACATGATTTCCTTACCTT
1 ATAGTAACTCATCAATGCCATGCCTTGGA-ATGGTCTTACATGATATCCTTACCTT
* *
70479409 ATAG-AACTTATCAATGCCATGCCTTGGAATGGTCTTACATGATATCCTTATCTT
1 ATAGTAACTCATCAATGCCATGCCTTGGAATGGTCTTACATGATATCCTTACCTT
70479463 A
1 A
70479464 CCAAATGCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 44 0.88
55 6 0.12
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (55 bp):
ATAGTAACTCATCAATGCCATGCCTTGGAATGGTCTTACATGATATCCTTACCTT
Found at i:70479444 original size:93 final size:92
Alignment explanation
Indices: 70479277--70479448 Score: 231
Period size: 92 Copynumber: 1.9 Consensus size: 92
70479267 AACTTACCAT
* *
70479277 TGCCATGTCTTGACATGGTTTTGAATCGTATCCTTGCCCTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTGAATCGTATCCTTACCCTATGAACTCACCAATGCCATGCCTTG
* *
70479342 GGATTGTCTTACATAGTAACTCATCAA
66 GAATGGTCTTACATAGTAACTCATCAA
* * * *
70479369 TGCCATGTCTTGACATGGTCTT-ACAT-GATTTCCTTACCTTATAGAACTTATCAATGCCATGCC
1 TGCCATGTCTTGACATGGTCTTGA-ATCG-TATCCTTACCCTAT-GAACTCACCAATGCCATGCC
70479432 TTGGAATGGTCTTACAT
63 TTGGAATGGTCTTACAT
70479449 GATATCCTTA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
91 2 0.03
92 34 0.49
93 33 0.48
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (92 bp):
TGCCATGTCTTGACATGGTCTTGAATCGTATCCTTACCCTATGAACTCACCAATGCCATGCCTTG
GAATGGTCTTACATAGTAACTCATCAA
Found at i:70479492 original size:47 final size:47
Alignment explanation
Indices: 70479437--70479557 Score: 224
Period size: 47 Copynumber: 2.6 Consensus size: 47
70479427 ATGCCTTGGA
* *
70479437 ATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAAC
1 ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAAC
70479484 ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAAC
1 ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAAC
70479531 ATGGTCTTACATGGTATCCTTGTCTTA
1 ATGGTCTTACATGGTATCCTTGTCTTA
70479558 GTGCCAATGC
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAAC
Done.