Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 226 of 433
Found at i:70479591 original size:142 final size:140
Alignment explanation
Indices: 70479438--70479691 Score: 325
Period size: 142 Copynumber: 1.8 Consensus size: 140
70479428 TGCCTTGGAA
* * *
70479438 TGGTCTTACAT-GATATCCTT-ATC-TTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTA
1 TGGTCTTACATGGA-ATCCTTAATCAATACC-AATGCCATG-TCCAAACATGGTCTTACACGGGA
*
70479500 TCCTTGTCTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTAGTGCCAA
63 TCCTTGCCTTACC-AATGCCATG-TCCAAACATGGTCTTACATGGTATCCTTGTCTTAGTGCCAA
70479565 TGCCACATCTTGATG
126 TGCCACATCTTGATG
* * * ***
70479580 TGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATGTCTTGACATGGTCTTACACGGGATCC
1 TGGTCTTACATGGAATCCTTAATCAATACCAATGCCATGTCCAAACATGGTCTTACACGGGATCC
***
70479645 TTGCCTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
66 TTGCCTTACCAATGCCATGTCCAAACATGGTCTTACATGGTATCCTT
70479692 AACCGTCAAT
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
140 25 0.26
141 9 0.09
142 46 0.48
143 13 0.14
144 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (140 bp):
TGGTCTTACATGGAATCCTTAATCAATACCAATGCCATGTCCAAACATGGTCTTACACGGGATCC
TTGCCTTACCAATGCCATGTCCAAACATGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGCCA
CATCTTGATG
Found at i:70489809 original size:88 final size:88
Alignment explanation
Indices: 70489663--70489859 Score: 238
Period size: 88 Copynumber: 2.2 Consensus size: 88
70489653 AACTTTTAAA
*
70489663 AAAACAAAGCAATTAAGCCCTTCTTTTTTTTTTACACTCAATTGAGCACCAGAACTTTCAAAATG
1 AAAA-AAAGCAATTAAGCCCTAC--TTTTTTTTACACTCAATTGAGCACCAGAACTTTCAAAATG
*
70489728 CATCAAAAAAAGCCTTCAAATTTTTTC
63 CATCAAAAAAA-CCCTCAAATTTTTTC
* * **
70489755 AAAAAAAGCAATTAAGTCCCTAC-TTTTTTT-CACTCAATTGGGTACTTGAACTTTCAAAATGCA
1 AAAAAAAGCAATTAAG-CCCTACTTTTTTTTACACTCAATTGAGCACCAGAACTTTCAAAATGCA
**
70489818 TCAAAAGGACCCTCAAATTTTTTC
65 TCAAAAAAACCCTCAAATTTTTTC
* *
70489842 -CAAACAGCAATTAAGCCC
1 AAAAAAAGCAATTAAGCCC
70489860 CTGCTCTTAT
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
85 3 0.03
86 13 0.14
87 14 0.15
88 36 0.38
89 7 0.07
91 12 0.13
92 9 0.10
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (88 bp):
AAAAAAAGCAATTAAGCCCTACTTTTTTTTACACTCAATTGAGCACCAGAACTTTCAAAATGCAT
CAAAAAAACCCTCAAATTTTTTC
Found at i:70489919 original size:17 final size:17
Alignment explanation
Indices: 70489897--70489929 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
70489887 TATAAATAAT
70489897 AATTATTAAATTTTAAA
1 AATTATTAAATTTTAAA
70489914 AATTATTAAATTTTAA
1 AATTATTAAATTTTAA
70489930 TAAAAATTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
AATTATTAAATTTTAAA
Found at i:70489933 original size:20 final size:20
Alignment explanation
Indices: 70489891--70489949 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
70489881 AAAAAATATA
*
70489891 AATAATAATTATTAAA-TTT
1 AATAAAAATTATTAAATTTT
70489910 --TAAAAATTATTAAATTTT
1 AATAAAAATTATTAAATTTT
* *
70489928 AATAAAAATTGTAAAATTTT
1 AATAAAAATTATTAAATTTT
70489948 AA
1 AA
70489950 AATTTTATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 13 0.38
18 3 0.09
20 18 0.53
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
AATAAAAATTATTAAATTTT
Found at i:70489969 original size:27 final size:28
Alignment explanation
Indices: 70489912--70489970 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
70489902 TTAAATTTTA
**
70489912 AAAATTATTAAATTTTAATAAAAATTGT
1 AAAATTATTAAATTTTAATAAAAATCAT
70489940 AAAATT-TTAAAATTTT-ATAAAAATCAT
1 AAAATTATT-AAATTTTAATAAAAATCAT
70489967 AAAA
1 AAAA
70489971 AAATTAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (28 bp):
AAAATTATTAAATTTTAATAAAAATCAT
Found at i:70489971 original size:28 final size:29
Alignment explanation
Indices: 70489910--70489971 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
70489900 TATTAAATTT
**
70489910 TAAAAATTATTAAATTTTAATAAAAATTG
1 TAAAAATTATTAAATTTTAATAAAAATCA
70489939 T-AAAATT-TTAAAATTTT-ATAAAAATCA
1 TAAAAATTATT-AAATTTTAATAAAAATCA
70489966 TAAAAA
1 TAAAAA
70489972 AATTAATGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 11 0.38
28 17 0.59
29 1 0.03
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (29 bp):
TAAAAATTATTAAATTTTAATAAAAATCA
Found at i:70490225 original size:19 final size:18
Alignment explanation
Indices: 70490175--70490292 Score: 62
Period size: 19 Copynumber: 6.5 Consensus size: 18
70490165 CTTTATAAAA
70490175 TTTTATAATTTTTTTATAT
1 TTTTAT-ATTTTTTTATAT
* * *
70490194 TTCTATATATTTTATATTT
1 TTTTATAT-TTTTTTATAT
* * *
70490213 TTTTATGATTTTTATAAAG
1 TTTTAT-ATTTTTTTATAT
* *
70490232 TTTTACAATTTTTTAT-T
1 TTTTATATTTTTTTATAT
*
70490249 TTTTACGA-TTTTTTAT-T
1 TTTTA-TATTTTTTTATAT
* * *
70490266 TTTTCTAATTTTTAATAT
1 TTTTATATTTTTTTATAT
*
70490284 TTTAATATT
1 TTTTATATT
70490293 AAAATTTAAT
Statistics
Matches: 75, Mismatches: 19, Indels: 11
0.71 0.18 0.10
Matches are distributed among these distances:
16 1 0.01
17 25 0.33
18 17 0.23
19 30 0.40
20 2 0.03
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTATATTTTTTTATAT
Found at i:70490252 original size:28 final size:27
Alignment explanation
Indices: 70490166--70490253 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 27
70490156 TTCTTACAAC
70490166 TTTATAAAATTTTATAATTTTTTTATATT
1 TTTAT-AAATTTTATAA-TTTTTTATATT
* * *
70490195 TCTATATATTTTATATTTTTTTATGATT
1 TTTATAAATTTTATAATTTTTTAT-ATT
*
70490223 TTTATAAAGTTTTACAATTTTTTAT-TT
1 TTTATAAA-TTTTATAATTTTTTATATT
70490250 TTTA
1 TTTA
70490254 CGATTTTTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
27 14 0.28
28 18 0.36
29 18 0.36
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (27 bp):
TTTATAAATTTTATAATTTTTTATATT
Found at i:70490254 original size:17 final size:17
Alignment explanation
Indices: 70490232--70490278 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
70490222 TTTTATAAAG
70490232 TTTTACAATTTTTTATT
1 TTTTACAATTTTTTATT
*
70490249 TTTTACGATTTTTTATT
1 TTTTACAATTTTTTATT
70490266 TTTT-CTAATTTTT
1 TTTTAC-AATTTTT
70490279 AATATTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 1 0.04
17 26 0.96
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTTACAATTTTTTATT
Found at i:70499239 original size:17 final size:18
Alignment explanation
Indices: 70499219--70499253 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
70499209 CTTTTTTAGA
*
70499219 TAAAT-TATATTACTTTT
1 TAAATATATATAACTTTT
70499236 TAAATATATATAACTTTT
1 TAAATATATATAACTTTT
70499254 ATGGTGTACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (18 bp):
TAAATATATATAACTTTT
Found at i:70499427 original size:16 final size:17
Alignment explanation
Indices: 70499408--70499441 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
70499398 TTAAATTTTT
70499408 ATATACAAA-GTTAAAA
1 ATATACAAATGTTAAAA
*
70499424 ATATATAAATGTTAAAA
1 ATATACAAATGTTAAAA
70499441 A
1 A
70499442 GTGAATATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (17 bp):
ATATACAAATGTTAAAA
Found at i:70499428 original size:18 final size:17
Alignment explanation
Indices: 70499407--70499441 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
70499397 ATTAAATTTT
70499407 TATATACAAAGTTAAAAA
1 TATATA-AAAGTTAAAAA
*
70499425 TATATAAATGTTAAAAA
1 TATATAAAAGTTAAAAA
70499442 GTGAATATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (17 bp):
TATATAAAAGTTAAAAA
Found at i:70501521 original size:199 final size:199
Alignment explanation
Indices: 70501181--70501578 Score: 724
Period size: 199 Copynumber: 2.0 Consensus size: 199
70501171 CTAATTATCA
* * *
70501181 ACAAGAAAAAACTTTAAAAGGGCATACTCAAAGGGATTATGTTCACCGACACATTATCTTACAAT
1 ACAAGAAAAAACTTGAAAAGGGCATACTAAAAGAGATTATGTTCACCGACACATTATCTTACAAT
*
70501246 TCCATATTAAGGCTTTTCTAGGGACAAAGGACGGGAAAAGAGTGAGGATGGAAAATTTGTTAATC
66 TCCATATTAAGGCTTTTCTAGGGACAAAGGACAGGAAAAGAGTGAGGATGGAAAATTTGTTAATC
*
70501311 AAAAAGTTCAGATTCATAACCACTTTCTTACTTTGTAGCTTAAGCATTAGATTGACAAATTTTTA
131 AAAAAGTTCAGATTCATAACCACTTTCCTACTTTGTAGCTTAAGCATTAGATTGACAAATTTTTA
70501376 ATCC
196 ATCC
*
70501380 ACAAGAAAAAACTTGAAAAGGGCATACTAAAAGAGATTATGTTCACTGACACATTATCTTACAAT
1 ACAAGAAAAAACTTGAAAAGGGCATACTAAAAGAGATTATGTTCACCGACACATTATCTTACAAT
* *
70501445 TCCATATTAAGGCTTTTCTAGGTACAAAGGATAGGAAAAGAGTGAGGATGGAAAATTTGTTAATC
66 TCCATATTAAGGCTTTTCTAGGGACAAAGGACAGGAAAAGAGTGAGGATGGAAAATTTGTTAATC
70501510 AAAAAGTTCAGATTCATAACCACTTTCCTACTTTGTAGCTTAAGCATTAGATTGACAAATTTTTA
131 AAAAAGTTCAGATTCATAACCACTTTCCTACTTTGTAGCTTAAGCATTAGATTGACAAATTTTTA
70501575 ATCC
196 ATCC
70501579 TCCCCTTTTT
Statistics
Matches: 191, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
199 191 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (199 bp):
ACAAGAAAAAACTTGAAAAGGGCATACTAAAAGAGATTATGTTCACCGACACATTATCTTACAAT
TCCATATTAAGGCTTTTCTAGGGACAAAGGACAGGAAAAGAGTGAGGATGGAAAATTTGTTAATC
AAAAAGTTCAGATTCATAACCACTTTCCTACTTTGTAGCTTAAGCATTAGATTGACAAATTTTTA
ATCC
Found at i:70507853 original size:27 final size:27
Alignment explanation
Indices: 70507821--70507872 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
70507811 ACTCAAATTT
*
70507821 AATTCTCTCAATTCTTCTAACTTTTTC
1 AATTCTCTCAACTCTTCTAACTTTTTC
* *
70507848 AATTCTCTCAACTCTTTTAAGTTTT
1 AATTCTCTCAACTCTTCTAACTTTT
70507873 GTTCGAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.02, T:0.52
Consensus pattern (27 bp):
AATTCTCTCAACTCTTCTAACTTTTTC
Found at i:70507860 original size:18 final size:19
Alignment explanation
Indices: 70507828--70507865 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
70507818 TTTAATTCTC
70507828 TCAATTCTTCTAACT-TTT
1 TCAATTCTTCTAACTCTTT
70507846 TCAATTC-TCTCAACTCTTT
1 TCAATTCTTCT-AACTCTTT
70507865 T
1 T
70507866 AAGTTTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.17
18 11 0.61
19 4 0.22
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (19 bp):
TCAATTCTTCTAACTCTTT
Found at i:70508063 original size:39 final size:39
Alignment explanation
Indices: 70508020--70508100 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
70508010 GAGACAATAG
70508020 TAAGGAGAAATTTAAAATTTTGCTATTTTTCAATTAAGT
1 TAAGGAGAAATTTAAAATTTTGCTATTTTTCAATTAAGT
* *
70508059 TAAGGAGAAATTTTAAATTTTGCTATTTTTTAATTAAGT
1 TAAGGAGAAATTTAAAATTTTGCTATTTTTCAATTAAGT
70508098 TAA
1 TAA
70508101 ATTTAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (39 bp):
TAAGGAGAAATTTAAAATTTTGCTATTTTTCAATTAAGT
Found at i:70523720 original size:2 final size:2
Alignment explanation
Indices: 70523713--70523749 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
70523703 AAAAAGAAAC
70523713 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
70523750 ATGCAATGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:70537850 original size:27 final size:27
Alignment explanation
Indices: 70537820--70537883 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
70537810 CACGAGTGTG
*
70537820 TGGGCCCATTTGGGCCGAGGAGGGCTT
1 TGGGCCCATTTGGGCCGAGAAGGGCTT
*
70537847 TGGGCCTATTTGGGCCGAGAAGGGCTT
1 TGGGCCCATTTGGGCCGAGAAGGGCTT
*
70537874 TAGGCCCATT
1 TGGGCCCATT
70537884 CGTATTGTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.14, C:0.22, G:0.39, T:0.25
Consensus pattern (27 bp):
TGGGCCCATTTGGGCCGAGAAGGGCTT
Found at i:70538072 original size:27 final size:27
Alignment explanation
Indices: 70537921--70538075 Score: 124
Period size: 27 Copynumber: 5.7 Consensus size: 27
70537911 TTAGTTTACC
* *
70537921 AAATTACTGAAATACCC-CCAG-TTGTA
1 AAATTAC-CAAATACCCTCGAGTTTGTA
* *
70537947 AAATTACCAAAGTACCC-CCAGTTTATA
1 AAATTACCAAA-TACCCTCGAGTTTGTA
* *
70537974 AAATTACCCAAATATCCTTGA-TTTGTA
1 AAATTA-CCAAATACCCTCGAGTTTGTA
*
70538001 AAATTACCGAAATACCCTC-AGTTTGCA
1 AAATTACC-AAATACCCTCGAGTTTGTA
* *
70538028 AAATTACTGAAATACCCTCGA-CTTGTA
1 AAATTAC-CAAATACCCTCGAGTTTGTA
*
70538055 AAATTATCAAAGTACCCTCGA
1 AAATTACCAAA-TACCCTCGA
70538076 ATTACAAAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
25 3 0.03
26 22 0.21
27 74 0.70
28 7 0.07
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATTACCAAATACCCTCGAGTTTGTA
Found at i:70538072 original size:54 final size:54
Alignment explanation
Indices: 70537913--70538087 Score: 194
Period size: 54 Copynumber: 3.3 Consensus size: 54
70537903 AGAATACTTT
* * * *
70537913 AGTTTACCAAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
* ** * * *
70537966 AGTTTATAAAATTACCCAAATATCCTTGATTTGTAAAATTACCGAAA-TACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCTC
* *
70538020 AGTTTGCAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
*
70538074 -GAATTACAAAATTA
1 AG-TTTACAAAATTA
70538088 TTATTTTACC
Statistics
Matches: 99, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
53 24 0.24
54 72 0.73
55 3 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
AGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTC
Found at i:70538084 original size:27 final size:26
Alignment explanation
Indices: 70538000--70538142 Score: 72
Period size: 27 Copynumber: 5.3 Consensus size: 26
70537990 CTTGATTTGT
* * *
70538000 AAAATTACCGAAATACCCTC-AGTTTGC
1 AAAATTATC-AAATACCCTCGA-ATTAC
* * **
70538027 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTA-TCAAATACCCTCGAATTAC
70538054 AAAATTATCAAAGTACCCTCGAATTAC
1 AAAATTATCAAA-TACCCTCGAATTAC
* ** * *
70538081 AAAATTATTATTTTACCCTCGATTTGC
1 AAAATTATCA-AATACCCTCGAATTAC
* ****
70538108 AGAATTACTGTTTTACCCTCGAATTAC
1 AAAATTA-TCAAATACCCTCGAATTAC
70538135 AAAATTAT
1 AAAATTAT
70538143 TGTTTTACCC
Statistics
Matches: 92, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
26 5 0.05
27 85 0.92
28 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (26 bp):
AAAATTATCAAATACCCTCGAATTAC
Found at i:70538663 original size:27 final size:27
Alignment explanation
Indices: 70538067--70538655 Score: 716
Period size: 27 Copynumber: 21.8 Consensus size: 27
70538057 ATTATCAAAG
* * *
70538067 TACCCTCGAATTACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
70538094 TACCCTCGATTTGCAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
70538121 TACCCTCGAATTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
70538148 TACCCTCAATTTA-AAGAATTACTGTTT
1 TACCCTCGATTTACAA-AATTACTGTTT
*
70538175 TACCCTCGATTTAAAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
*
70538202 TACCCTTGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
*
70538229 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
70538256 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
70538283 TACCTTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
70538310 TACCCTCAATTTACTAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
70538337 TACCCTCGATTGACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
70538364 TACCCTCGATTGACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
70538391 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
70538418 TACCCTCAATTTACTAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
70538445 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* **
70538472 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
70538499 TACCCTTGATTTACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
70538526 TACCCTCGATTGACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
70538553 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
70538580 TACCCTCGATTTAAAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
70538607 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
70538634 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTACAAAATTAC
70538656 CATTTTACTC
Statistics
Matches: 493, Mismatches: 65, Indels: 8
0.87 0.11 0.01
Matches are distributed among these distances:
26 3 0.01
27 488 0.99
28 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:70539228 original size:6 final size:6
Alignment explanation
Indices: 70539182--70539275 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
70539172 TTGCATTCAC
* * * *
70539182 ATTCTG ATTTTG ATTCTG -TTACCTA ATACTG ATTCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
70539231 -TCATATG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
70539276 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 14, Indels: 16
0.69 0.15 0.17
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:70539239 original size:25 final size:24
Alignment explanation
Indices: 70539211--70539275 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 24
70539201 TACCTAATAC
70539211 TGATTCTAATTCTGATTCTGTCA-TA
1 TGATTCTAATTCTGATTC--TCATTA
* *
70539236 TGATTCTGATTCTGATTCTCATTT
1 TGATTCTAATTCTGATTCTCATTA
*
70539260 TGATTCTAGTTCTGAT
1 TGATTCTAATTCTGAT
70539276 AATGTTTCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 3 0.09
24 15 0.43
25 17 0.49
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (24 bp):
TGATTCTAATTCTGATTCTCATTA
Found at i:70540608 original size:22 final size:23
Alignment explanation
Indices: 70540580--70540659 Score: 76
Period size: 23 Copynumber: 3.4 Consensus size: 23
70540570 CAACTCTTAT
70540580 GAGCTTACTATTT-AGCTCG-ATA
1 GAGCTTACTATTTCAGCT-GAATA
70540602 GAGCTTAC-AGTTTCAGCTGAATA
1 GAGCTTACTA-TTTCAGCTGAATA
* *
70540625 GAGCTTACTATTCATCAGCTCAAGA
1 GAGCTTACTATT--TCAGCTGAATA
70540650 GGAGCTTACT
1 -GAGCTTACT
70540660 GATCATGGCT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
21 1 0.02
22 12 0.24
23 17 0.35
24 1 0.02
25 9 0.18
26 9 0.18
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (23 bp):
GAGCTTACTATTTCAGCTGAATA
Found at i:70550042 original size:40 final size:40
Alignment explanation
Indices: 70549997--70550164 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
70549987 CGGAATATAA
70549997 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70550037 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
70550077 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
70550117 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70550157 CCGGATAT
1 CCGGATAT
70550165 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70559746 original size:40 final size:40
Alignment explanation
Indices: 70559701--70559867 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
70559691 CGGAATATAA
70559701 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70559741 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
70559781 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
70559821 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70559860 CCGGATAT
1 CCGGATAT
70559868 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70567730 original size:40 final size:40
Alignment explanation
Indices: 70567685--70567852 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
70567675 CGGAATATAA
70567685 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70567725 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
70567765 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
70567805 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70567845 CCGGATAT
1 CCGGATAT
70567853 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70572679 original size:93 final size:93
Alignment explanation
Indices: 70572566--70572736 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
70572556 GCCCCTAAGT
* ** * *
70572566 GAACTTGGACTCAACTCAACGAGCTCAGG-TGTCCACATCCATAAGTGAACTTGGACTCAGCTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATCCACATCCATAAGTGAACTCGGACTCAACTCA
70572630 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
70572659 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATCCACATCCATAAGTGAACTCGGACTCAACTCAA
70572724 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70572737 TCAACCATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATCCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70572719 original size:46 final size:46
Alignment explanation
Indices: 70572561--70572733 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
70572551 AACCCGCCCC
* * ** *
70572561 TAAGTGAACTTGGACTCAACTCAACGAGCTCAGG-TGTCCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCACATCCA
* *
70572607 TAAGTGAACTTGGACTCAGCTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* * *
70572655 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
70572700 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70572734 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.55
47 27 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:70576502 original size:26 final size:26
Alignment explanation
Indices: 70576473--70576532 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
70576463 TCCCTTTGAA
* * *
70576473 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
70576499 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
70576527 TCATTC
1 TCATTC
70576533 TCAATATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:70576518 original size:28 final size:28
Alignment explanation
Indices: 70576487--70576549 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
70576477 TCGATATTTT
70576487 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
70576515 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
70576543 GTACACT
1 GCACACT
70576550 GAGTACCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:70580282 original size:28 final size:28
Alignment explanation
Indices: 70580227--70580296 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
70580217 TATGGTACTC
*
70580227 AGTGTACGAAATATTGAGAATAGAACTT
1 AGTGTGCGAAATATTGAGAATAGAACTT
* *
70580255 AGTGTGCGAGATATTGAGAAT-GTCACTT
1 AGTGTGCGAAATATTGAGAATAG-AACTT
*
70580283 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
70580297 CGAATGATTC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
27 1 0.03
28 35 0.97
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATAGAACTT
Found at i:70582299 original size:28 final size:28
Alignment explanation
Indices: 70582268--70582368 Score: 96
Period size: 28 Copynumber: 3.6 Consensus size: 28
70582258 GTGAACATAG
*
70582268 GCACTGTGTGTGTGAGTTTCGTAACCAA
1 GCACTGTGTGTGCGAGTTTCGTAACCAA
* * *** *
70582296 GCACTGTGTGTACGAG-ATCGGTTATTGAG
1 GCACTGTGTGTGCGAGTTTC-G-TAACCAA
*
70582325 GCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTTCGTAACCAA
*
70582353 GCACTGTATGTGCGAG
1 GCACTGTGTGTGCGAG
70582369 ATCGGTTGTT
Statistics
Matches: 55, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
27 2 0.04
28 33 0.60
29 19 0.35
30 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTTCGTAACCAA
Found at i:70582354 original size:57 final size:57
Alignment explanation
Indices: 70582266--70582678 Score: 587
Period size: 57 Copynumber: 7.2 Consensus size: 57
70582256 AAGTGAACAT
* * * * *
70582266 AGGCACTGTGTGTGTGAGTTTCGTAACCAAGCACTGTGTGTACGAGATCGGTTATTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
70582323 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTATGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
70582380 AGGCATTATGTGTGCGAGTTCCGTAACCGAGCA-TGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * * *
70582436 AGGCATTATGTGTGCGAGTTCCGTAACTGAGCACTATGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
**
70582493 AGGCACTGTGTGTGCGAGTTCCGTAAGTGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * * * *
70582550 TGGCACTG-GTGTGCGAGTTTCGTAACTGAGCACTATGTGTGTGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
70582606 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
70582663 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
70582679 AAATGAGATC
Statistics
Matches: 324, Mismatches: 28, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
56 105 0.32
57 212 0.65
59 7 0.02
ACGTcount: A:0.18, C:0.16, G:0.35, T:0.30
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:70582448 original size:113 final size:114
Alignment explanation
Indices: 70582266--70582676 Score: 601
Period size: 113 Copynumber: 3.6 Consensus size: 114
70582256 AAGTGAACAT
* * * * *
70582266 AGGCACTGTGTGTGTGAGTTTCGTAACCAAGCACTGTGTGTACGAGATCGGTTATTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTA
** * *
70582331 TGTGTGCGAGTTCCGTAACCAAGCACTGTATGTGCGAGATCGGTTGTTG
66 TGTGTGCGAGTTCCGTAACTGAGCACTATGTGTGCGAGATCGGTTGTTG
* * * *
70582380 AGGCATTATGTGTGCGAGTTCCGTAACCGAGCA-TGTGTGTGCGAGATCGGTTGTTGAGGCATTA
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTA
70582444 TGTGTGCGAGTTCCGTAACTGAGCACTATGTGTGCGAGATCGGTTGTTG
66 TGTGTGCGAGTTCCGTAACTGAGCACTATGTGTGCGAGATCGGTTGTTG
*** *
70582493 AGGCACTGTGTGTGCGAGTTCCGTAAGTGAGCACTGTGTGTGCGAGATCGGTTGTTGTGGCACT-
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTA
* * *
70582557 GGTGTGCGAGTTTCGTAACTGAGCACTATGTGTGTGAGATCGGTTGTTG
66 TGTGTGCGAGTTCCGTAACTGAGCACTATGTGTGCGAGATCGGTTGTTG
* *
70582606 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGGGGCACTA
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTA
*
70582671 AGTGTG
66 TGTGTG
70582677 TGAAATGAGA
Statistics
Matches: 267, Mismatches: 28, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
113 206 0.77
114 61 0.23
ACGTcount: A:0.18, C:0.17, G:0.35, T:0.30
Consensus pattern (114 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTA
TGTGTGCGAGTTCCGTAACTGAGCACTATGTGTGCGAGATCGGTTGTTG
Found at i:70582598 original size:170 final size:170
Alignment explanation
Indices: 70582266--70582678 Score: 585
Period size: 170 Copynumber: 2.4 Consensus size: 170
70582256 AAGTGAACAT
* * * * *
70582266 AGGCACTGTGTGTGTGAGTTTCGTAACCAAGCACTGTGTGTACGAGATCGGTTATTGAGGCACTG
1 AGGCACTATGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
* *
70582331 TGTGTGCGAGTTCCGTAACCAAGCACTGTATGTGCGAGATCGGTTGTTGAGGCATTATGTGTGCG
66 TGTGTGCGAGTTCCGTAACCAAGCACTGTATGTGCGAGATCGGTTGTTGAGGCACTAGGTGTGCG
*
70582396 AGTTCCGTAACCGAGCATGTGTGTGCGAGATCGGTTGTTG
131 AGTTCCGTAACCGAGCATATGTGTGCGAGATCGGTTGTTG
* ** *
70582436 AGGCATTATGTGTGCGAGTTCCGTAACTGAGCACTATGTGTGCGAGATCGGTTGTTGAGGCACTG
1 AGGCACTATGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
*** * *
70582501 TGTGTGCGAGTTCCGTAAGTGAGCACTGTGTGTGCGAGATCGGTTGTTGTGGCACT-GGTGTGCG
66 TGTGTGCGAGTTCCGTAACCAAGCACTGTATGTGCGAGATCGGTTGTTGAGGCACTAGGTGTGCG
* * *
70582565 AGTTTCGTAACTGAGCACTATGTGTGTGAGATCGGTTGTTG
131 AGTTCCGTAACCGAGCA-TATGTGTGCGAGATCGGTTGTTG
* * *
70582606 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGGGGCACTA
1 AGGCACTATGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACT-
70582671 AGTGTGTG
65 -GTGTGTG
70582679 AAATGAGATC
Statistics
Matches: 213, Mismatches: 27, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
169 22 0.10
170 184 0.86
172 7 0.03
ACGTcount: A:0.18, C:0.16, G:0.35, T:0.30
Consensus pattern (170 bp):
AGGCACTATGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
TGTGTGCGAGTTCCGTAACCAAGCACTGTATGTGCGAGATCGGTTGTTGAGGCACTAGGTGTGCG
AGTTCCGTAACCGAGCATATGTGTGCGAGATCGGTTGTTG
Found at i:70587625 original size:28 final size:28
Alignment explanation
Indices: 70587593--70587662 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
70587583 TATGGTACTC
*
70587593 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
70587621 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
70587649 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
70587663 CGAATGATTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:70590866 original size:116 final size:116
Alignment explanation
Indices: 70590662--70590891 Score: 397
Period size: 116 Copynumber: 2.0 Consensus size: 116
70590652 AACCTGAAGG
* * *
70590662 TACTTGATGTTCAGCTTTAATTTGCTGACATACCATACATTTCGATACAAATTTAGAAATATCTC
1 TACTTGATGTTCAGCTTTAATTTGCTGACATACCAGACATTTCAATACAAATTCAGAAATATCTC
70590727 TTTTCATGCCGTTCCACTAGTACATTTTCTTCAAATCATTGTACATATTAT
66 TTTTCATGCCGTTCCACTAGTACATTTTCTTCAAATCATTGTACATATTAT
*
70590778 TACTTGATGTTCAGCTTTAATTTGCTGACATACCAGGCATTTCAATACAAATTCAGAAATATCTC
1 TACTTGATGTTCAGCTTTAATTTGCTGACATACCAGACATTTCAATACAAATTCAGAAATATCTC
* * *
70590843 TTTTCATGCTGTTTCACTAGTACATTTTCTTCAAATCGTTGTACATATT
66 TTTTCATGCCGTTCCACTAGTACATTTTCTTCAAATCATTGTACATATT
70590892 GGTACTTCCC
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 107 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (116 bp):
TACTTGATGTTCAGCTTTAATTTGCTGACATACCAGACATTTCAATACAAATTCAGAAATATCTC
TTTTCATGCCGTTCCACTAGTACATTTTCTTCAAATCATTGTACATATTAT
Found at i:70597932 original size:21 final size:21
Alignment explanation
Indices: 70597908--70597949 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
70597898 GTCTAAGTTG
70597908 GACTACTTCAGGAGGTCTTTC
1 GACTACTTCAGGAGGTCTTTC
70597929 GACTACTTCAGGAGGTCTTTC
1 GACTACTTCAGGAGGTCTTTC
70597950 ACATTGCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (21 bp):
GACTACTTCAGGAGGTCTTTC
Found at i:70598512 original size:12 final size:11
Alignment explanation
Indices: 70598490--70598586 Score: 81
Period size: 11 Copynumber: 8.4 Consensus size: 11
70598480 AATGTTCTAG
*
70598490 TTTCAAATTTT
1 TTTCGAATTTT
70598501 TTTCTGAA-TTT
1 TTTC-GAATTTT
70598512 TTTCGAAATTTT
1 TTTCG-AATTTT
*
70598524 TTTCAAATTTT
1 TTTCGAATTTT
70598535 TTT-GAACTTTT
1 TTTCGAA-TTTT
70598546 TTTCGAAACTTTT
1 TTTCG-AA-TTTT
* *
70598559 TTTTGAACTTT
1 TTTCGAATTTT
70598570 TTTCGAAAGTTTT
1 TTTCG-AA-TTTT
70598583 TTTC
1 TTTC
70598587 ACTTACTTGA
Statistics
Matches: 71, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
10 3 0.04
11 36 0.51
12 14 0.20
13 18 0.25
ACGTcount: A:0.22, C:0.10, G:0.07, T:0.61
Consensus pattern (11 bp):
TTTCGAATTTT
Found at i:70598533 original size:34 final size:34
Alignment explanation
Indices: 70598490--70598561 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
70598480 AATGTTCTAG
70598490 TTTCAAATTTTTTTCTGAA-TTTTTTCGAAA-TTTT
1 TTTCAAA-TTTTTT-TGAACTTTTTTCGAAACTTTT
70598524 TTTCAAATTTTTTTGAACTTTTTTTCGAAACTTTT
1 TTTCAAATTTTTTTGAAC-TTTTTTCGAAACTTTT
70598559 TTT
1 TTT
70598562 TGAACTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
32 4 0.11
33 6 0.17
34 18 0.51
35 7 0.20
ACGTcount: A:0.22, C:0.10, G:0.06, T:0.62
Consensus pattern (34 bp):
TTTCAAATTTTTTTGAACTTTTTTCGAAACTTTT
Found at i:70604313 original size:42 final size:42
Alignment explanation
Indices: 70604247--70604405 Score: 162
Period size: 42 Copynumber: 3.8 Consensus size: 42
70604237 TGAGTTTACG
* * * * * *
70604247 TGTAAGACCATATCCGAGATATGGCATCATTATGAGATTTTG
1 TGTAAGACCATATCTGGGACATGGCATCAGTATGAGATATTA
* * *
70604289 TGTAAGACCATGTCTGGGACATGGCATCGGTATGAGA-ATAA
1 TGTAAGACCATATCTGGGACATGGCATCAGTATGAGATATTA
* **
70604330 TGTAAGACCATAGT-TGGG-CTTGGCATCAGTATGAGATCCTA
1 TGTAAGACCATA-TCTGGGACATGGCATCAGTATGAGATATTA
* *
70604371 TGTAAGACCATATCTGGGATATGGCATTAGTATGA
1 TGTAAGACCATATCTGGGACATGGCATCAGTATGA
70604406 TTCTATGTGT
Statistics
Matches: 95, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
40 17 0.18
41 33 0.35
42 45 0.47
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACATGGCATCAGTATGAGATATTA
Found at i:70604374 original size:41 final size:40
Alignment explanation
Indices: 70604268--70604405 Score: 129
Period size: 41 Copynumber: 3.4 Consensus size: 40
70604258 ATCCGAGATA
* * *
70604268 TGGCATCATTATGAGATTTTGTGTAAGACCAT-GTCTGGGACA
1 TGGCATCAGTATGAGA--TTATGTAAGACCATAGTCTGGG-CT
* *
70604310 TGGCATCGGTATGAGAATAATGTAAGACCATAGT-TGGGCT
1 TGGCATCAGTATGAG-ATTATGTAAGACCATAGTCTGGGCT
*
70604350 TGGCATCAGTATGAGATCCTATGTAAGACCATA-TCTGGGAT
1 TGGCATCAGTATGAGAT--TATGTAAGACCATAGTCTGGGCT
*
70604391 ATGGCATTAGTATGA
1 -TGGCATCAGTATGA
70604406 TTCTATGTGT
Statistics
Matches: 81, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
39 2 0.02
40 16 0.20
41 34 0.42
42 28 0.35
43 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (40 bp):
TGGCATCAGTATGAGATTATGTAAGACCATAGTCTGGGCT
Found at i:70613503 original size:40 final size:40
Alignment explanation
Indices: 70613423--70613627 Score: 313
Period size: 40 Copynumber: 5.2 Consensus size: 40
70613413 AACCCAAGTA
* * *
70613423 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
70613462 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCATAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
70613502 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
70613542 CCTTAGGGACTTAGCCCGTATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
70613582 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
70613622 CCTTCG
1 CCTTCG
70613628 AATCTTAGTC
Statistics
Matches: 149, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 13 0.09
40 136 0.91
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:70615027 original size:13 final size:13
Alignment explanation
Indices: 70615009--70615034 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70614999 ATTTTTATTT
70615009 TTAACATAAAATA
1 TTAACATAAAATA
70615022 TTAACATAAAATA
1 TTAACATAAAATA
70615035 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:70621714 original size:38 final size:39
Alignment explanation
Indices: 70621544--70621707 Score: 233
Period size: 40 Copynumber: 4.2 Consensus size: 39
70621534 AACCCAAGTA
* * * *
70621544 CCTTCGGGATTTAGTCGGACATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAATG
* *
70621583 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATG
70621623 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTCACTAGCACAAATG
70621663 CCTTCGGGACTTAG-CGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATG
70621701 CCTTCGG
1 CCTTCGG
70621708 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 8, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
38 30 0.26
39 16 0.14
40 68 0.60
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATG
Found at i:70623101 original size:13 final size:13
Alignment explanation
Indices: 70623083--70623108 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70623073 ATTTTTATTT
70623083 TTAACATAAAATA
1 TTAACATAAAATA
70623096 TTAACATAAAATA
1 TTAACATAAAATA
70623109 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:70627950 original size:6 final size:6
Alignment explanation
Indices: 70627939--70628049 Score: 59
Period size: 6 Copynumber: 17.8 Consensus size: 6
70627929 TGTCAAAACT
* * *
70627939 AGAATC AGAATC AGAATC AAAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
70627988 AGTATC AGGTAA-C ATAATC AAAATC AGAATC A-ATATC AGGTAA-C AGAATC
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AGA-ATC A-G-AATC AGAATC
*
70628038 AAAAATC AGAAT
1 -AGAATC AGAAT
70628050 GTGAATGCAA
Statistics
Matches: 80, Mismatches: 13, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
5 6 0.08
6 58 0.73
7 12 0.15
8 3 0.04
9 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:70627975 original size:31 final size:31
Alignment explanation
Indices: 70627939--70628049 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
70627929 TGTCAAAACT
* * * *
70627939 AGAATCAGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAAAATCAGAATCAATATCAGGTAAC
* *
70627970 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAATATCAGGTAAC
*
70628001 ATAATCAAAATCAGAATCAATATCAGGTAAC
1 AGAATCAAAATCAGAATCAATATCAGGTAAC
70628032 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
70628050 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 60 0.85
32 11 0.15
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAATATCAGGTAAC
Found at i:70628514 original size:27 final size:27
Alignment explanation
Indices: 70628457--70628704 Score: 338
Period size: 27 Copynumber: 9.3 Consensus size: 27
70628447 GGGGAAAAAT
* * * *
70628457 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
70628483 GGTAATTCCATCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
70628510 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
70628537 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
70628564 GGTAATTCTACCATATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
70628591 -GTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
70628617 GGTAATTCTACCCTGCAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
70628644 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
70628671 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
70628698 AGTAATT
1 GGTAATT
70628705 TTACAAATCG
Statistics
Matches: 193, Mismatches: 27, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
26 36 0.19
27 157 0.81
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:70628636 original size:107 final size:108
Alignment explanation
Indices: 70628475--70628704 Score: 336
Period size: 107 Copynumber: 2.1 Consensus size: 108
70628465 TACCCCACAA
* * * * *
70628475 GGTATCTCGGTAATTCCATCCTATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGT
1 GGTATTTCAGTAATTCCACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT
*
70628540 AATTCTACCCTACAGGGGTATTCCGGTAATTCTACCATATAGG
66 AATTCTACCCTACAGGGGTATTCCGGTAATTCTACCATACAGG
* * *
70628583 GGTATTTC-GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTGCAGGGGTATTTCGGT
1 GGTATTTCAGTAATTCCACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT
* ** *
70628647 AATTCTACCCTATAGGGGTATTTTGGTAATTCTACCCTACAGG
66 AATTCTACCCTACAGGGGTATTCCGGTAATTCTACCATACAGG
70628690 GGTATTTCAGTAATT
1 GGTATTTCAGTAATT
70628705 TTACAAATCG
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
107 96 0.88
108 13 0.12
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.36
Consensus pattern (108 bp):
GGTATTTCAGTAATTCCACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT
AATTCTACCCTACAGGGGTATTCCGGTAATTCTACCATACAGG
Found at i:70628722 original size:27 final size:27
Alignment explanation
Indices: 70628689--70628946 Score: 260
Period size: 27 Copynumber: 9.6 Consensus size: 27
70628679 TACCCTACAG
70628689 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* ** *
70628716 GGATATTTGGGTAATTTTATAAATCG-
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
70628742 GAGGTACTTT-GGTAATTTTACAAGTCGA
1 G-GGTA-TTTCAGTAATTTTACAAATCGA
*
70628770 GGGTATTTCAGTAATTTTGCAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
**
70628797 GGGTATTTCAGTAATTTTGTAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
70628824 GGGTATTTC-GATAATTTTACAAATCGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
*
70628851 GGGTATTTCAGTAATTTTAC-AATTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * * *
70628877 CGGTATTTCGGTAATTTTATAAACCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
70628904 GGGTACTTT-GGTAATTTTACAACTGGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
70628931 -GGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
70628947 GGTAAACTAA
Statistics
Matches: 193, Mismatches: 27, Indels: 23
0.79 0.11 0.09
Matches are distributed among these distances:
25 3 0.02
26 39 0.20
27 142 0.74
28 9 0.05
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:70628723 original size:81 final size:81
Alignment explanation
Indices: 70628475--70628731 Score: 308
Period size: 80 Copynumber: 3.2 Consensus size: 81
70628465 TACCCCACAA
* * * *
70628475 GGTATCTCGGTAATTCCATCC-TATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGG
1 GGTATTTCGGTAATTCTA-CCATATAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAG
**
70628539 TAATTCTACCCTAC-AGG
65 TAATTCTACAAT-CGAGG
* * *
70628556 GGTATTCCGGTAATTCTACCATATAGGGGTA-TTTCGTAATTCTACCCTACAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCATATAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGT
**
70628620 AATTCTACCCT-GCAGG
66 AATTCTACAATCG-AGG
*
70628636 GGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGT
1 GGTATTTCGGTAATTCTACCATATAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGT
*
70628701 AATTTTACAAATCGA-G
66 AATTCTAC-AATCGAGG
* *
70628717 GATATTTGGGTAATT
1 GGTATTTCGGTAATT
70628732 TTATAAATCG
Statistics
Matches: 157, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
80 77 0.49
81 77 0.49
82 2 0.01
83 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCATATAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGT
AATTCTACAATCGAGG
Found at i:70628753 original size:81 final size:78
Alignment explanation
Indices: 70628663--70628946 Score: 292
Period size: 81 Copynumber: 3.5 Consensus size: 78
70628653 ACCCTATAGG
* * * *
70628663 GGTATTTTGGTAATTCTACCCTAC-AGGGGTATTTCAGTAATTTTACAAATCGAGGATATTTGGG
1 GGTACTTTGGTAATTTTA-CCAACGA-GGGTATTTCAGTAATTTTACAAATCGAGG-TATTTCGG
70628727 TAATTTTATAAATCGGA
63 TAATTTTATAAA-CGGA
* *
70628744 GGTACTTTGGTAATTTTA-CAAGTCGAGGGTATTTCAGTAATTTTGCAAATCGAGGGTATTTCAG
1 GGTACTTTGGTAATTTTACCAA--CGAGGGTATTTCAGTAATTTTACAAATCGA-GGTATTTCGG
* *
70628808 TAATTTTGTAAACTGA
63 TAATTTTATAAACGGA
* * *
70628824 GGGTA-TTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC-AATTGACGGTATTTCG
1 -GGTACTTT-GGTAATTTTACCAA-CGAGGGTATTTCAGTAATTTTACAAATCGA-GGTATTTCG
*
70628887 GTAATTTTATAAACCGGG
62 GTAATTTTATAAA-CGGA
70628905 GGTACTTTGGTAATTTTA-CAACTG-GAGGTATTTCAGTAATTT
1 GGTACTTTGGTAATTTTACCAAC-GAG-GGTATTTCAGTAATTT
70628947 GGTAAACTAA
Statistics
Matches: 173, Mismatches: 19, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
78 2 0.01
79 21 0.12
80 44 0.25
81 101 0.58
82 5 0.03
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (78 bp):
GGTACTTTGGTAATTTTACCAACGAGGGTATTTCAGTAATTTTACAAATCGAGGTATTTCGGTAA
TTTTATAAACGGA
Found at i:70631358 original size:58 final size:57
Alignment explanation
Indices: 70631286--70631396 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
70631276 TGAATGTGAC
* * *
70631286 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-ATGGGCCTAATGGGCCAGATACAGGTGATT
* * *
70631344 TGGGCCTAATGGGCCATATGAATATGAATGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGAATGGGCCTAATGGGCCAGATACAGGT
70631397 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGAATGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:70631384 original size:28 final size:29
Alignment explanation
Indices: 70631273--70631387 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
70631263 GTGAGCGTGA
* *
70631273 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
70631301 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
70631330 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
70631359 ATATGAATATGA-ATGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
70631387 A
1 A
70631388 GATACAGGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 27 0.36
29 48 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:70645375 original size:49 final size:49
Alignment explanation
Indices: 70645314--70645600 Score: 470
Period size: 49 Copynumber: 5.9 Consensus size: 49
70645304 GTATGAGATG
*
70645314 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
70645363 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
70645412 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
70645461 TATACATATGATATGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
70645508 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
70645557 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
70645601 CATATGTGTG
Statistics
Matches: 220, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 40 0.18
49 180 0.82
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:70645564 original size:145 final size:146
Alignment explanation
Indices: 70645322--70645600 Score: 488
Period size: 145 Copynumber: 1.9 Consensus size: 146
70645312 TGTATATATG
*
70645322 TGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGG
1 TGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATA-ATGTGATAAGGCCTAATGG
*
70645387 CCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGT
65 CCAATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGT
70645452 GAAAGTGTATATACATA
130 GAAAGTGTATATACATA
*
70645469 TGATATGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATAT-ATGTGATAAGGCCTAATGGC
1 TGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATAATGTGATAAGGCCTAATGGC
* * *
70645533 CGATGTGATGAATGCGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66 CAATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTG
70645598 AAA
131 AAA
70645601 CATATGTGTG
Statistics
Matches: 126, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
145 84 0.67
147 42 0.33
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.29
Consensus pattern (146 bp):
TGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATAATGTGATAAGGCCTAATGGC
CAATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTG
AAAGTGTATATACATA
Found at i:70645687 original size:18 final size:18
Alignment explanation
Indices: 70645664--70645699 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
70645654 GTGTGATATG
*
70645664 TATATGTGGTAAAGCCTA
1 TATATGTGATAAAGCCTA
*
70645682 TATATGTGATAAGGCCTA
1 TATATGTGATAAAGCCTA
70645700 ATGGCCGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (18 bp):
TATATGTGATAAAGCCTA
Found at i:70645688 original size:123 final size:123
Alignment explanation
Indices: 70645557--70645802 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
70645547 CGAAGGTGTA
70645557 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
70645622 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
70645680 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
*
70645745 TGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
70645803 GAAGGGCTAA
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.32
Consensus pattern (123 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:70645703 original size:66 final size:69
Alignment explanation
Indices: 70645616--70645754 Score: 176
Period size: 75 Copynumber: 2.0 Consensus size: 69
70645606 GTGTGATATG
*
70645616 TATATGTGGTAAAGCCGAATGG-C-T-AATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
1 TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
70645678 CCTA
66 CCTA
* *
70645682 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTG
1 TATATGTGATAAAGCCGAATGGCC-----G-TGAATGTGAAACATATGTGTGATATGTATATGTG
70645747 GTAAAGCC
60 GTAAAGCC
70645755 GAATGGCTAA
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
66 19 0.31
67 1 0.02
74 1 0.02
75 40 0.66
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (69 bp):
TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
CCTA
Found at i:70645769 original size:48 final size:48
Alignment explanation
Indices: 70645715--70645914 Score: 373
Period size: 48 Copynumber: 4.2 Consensus size: 48
70645705 CGATGTGATG
*
70645715 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
70645763 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
70645811 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
70645859 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
70645907 AATGTGAA
1 AATGTGAA
70645915 TGTTGTAACA
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 148 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:70645802 original size:171 final size:172
Alignment explanation
Indices: 70645508--70645850 Score: 498
Period size: 171 Copynumber: 2.0 Consensus size: 172
70645498 TGTGAAAGAG
** *
70645508 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAGGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAACATATATATATATGTGATAAGG
* *
70645573 CCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGG
66 CCTAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAAGGG
70645638 CTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
131 CTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
* * * *
70645680 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGT-ATAT
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCG-AACATATATAT-ATATGTGATAA
* * *
70645744 GTG-GTAA-AGCCGAATG-GCT-AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
64 G-GCCTAATAGCCG-ATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGA
*
70645805 AGGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
127 AGGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
70645851 GAATGGCTAA
Statistics
Matches: 154, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
171 85 0.55
172 46 0.30
173 16 0.10
174 7 0.05
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.31
Consensus pattern (172 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAACATATATATATATGTGATAAGG
CCTAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAAGGG
CTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:70646008 original size:37 final size:37
Alignment explanation
Indices: 70645954--70646081 Score: 238
Period size: 37 Copynumber: 3.4 Consensus size: 37
70645944 AACTTGGAAA
*
70645954 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
70645992 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
70646029 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
70646066 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
70646082 TTCGTAATAA
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
37 85 0.96
38 4 0.04
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:70648975 original size:27 final size:27
Alignment explanation
Indices: 70648942--70648996 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
70648932 GAATCTCATA
*
70648942 CCTGTAGGCTAGTATTACTAAAATACC
1 CCTGTAGGCTAGAATTACTAAAATACC
* *
70648969 CCTGTAGGGTAGAATTATTAAAATACC
1 CCTGTAGGCTAGAATTACTAAAATACC
70648996 C
1 C
70648997 TTGGTTTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (27 bp):
CCTGTAGGCTAGAATTACTAAAATACC
Found at i:70649011 original size:27 final size:27
Alignment explanation
Indices: 70648981--70649107 Score: 139
Period size: 27 Copynumber: 4.7 Consensus size: 27
70648971 TGTAGGGTAG
* *
70648981 AATTATTAAAATACCCTTGGTTTACAA
1 AATTATCAAAATACCCCTGGTTTACAA
* ***
70649008 AATTACCAAAATA-CCCTCAATTAGCAA
1 AATTATCAAAATACCCCTGGTTTA-CAA
**
70649035 AATTATCAAAATACCCCTGGTTTGTAA
1 AATTATCAAAATACCCCTGGTTTACAA
* **
70649062 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTATCAAAATACCCCTGGTTTACAA
70649089 AATTATCAAAATACCCCTG
1 AATTATCAAAATACCCCTG
70649108 ATTCTCGACC
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 6 0.07
27 72 0.86
28 6 0.07
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTATCAAAATACCCCTGGTTTACAA
Found at i:70649020 original size:54 final size:52
Alignment explanation
Indices: 70648955--70649107 Score: 155
Period size: 54 Copynumber: 2.8 Consensus size: 52
70648945 GTAGGCTAGT
* * * * *
70648955 ATTACTAAAATACCCCTGTAGGGTAGAATTATTAAAATACCCTTGGTTTACAAA
1 ATTACCAAAATACCCCTGTA--GCAAAATTATCAAAATACCCCTGGTTTACAAA
**
70649009 ATTACCAAAATACCCTCAAT-TAGCAAAATTATCAAAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCC-C--TGTAGCAAAATTATCAAAATACCCCTGGTTTACAAA
* *
70649063 ATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTG
1 ATTACCAAAATACCCCT-G-TAGCAAAATTATCAAAATACCCCTG
70649108 ATTCTCGACC
Statistics
Matches: 84, Mismatches: 9, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
51 1 0.01
53 1 0.01
54 78 0.93
55 1 0.01
56 2 0.02
57 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (52 bp):
ATTACCAAAATACCCCTGTAGCAAAATTATCAAAATACCCCTGGTTTACAAA
Found at i:70649135 original size:61 final size:60
Alignment explanation
Indices: 70649057--70649170 Score: 156
Period size: 61 Copynumber: 1.9 Consensus size: 60
70649047 ACCCCTGGTT
* *** *
70649057 TGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTGATTCTCGACC
1 TGTAAAATTACCAAAATACCCATAACTTGT-AAATTACCAAAATACCCCTGATTCTCGACC
* *
70649118 TGTAAAATTATCAAAATACCCATAACTTGTAAATTACCGAAATACCCCTGATT
1 TGTAAAATTACCAAAATACCCATAACTTGTAAATTACCAAAATACCCCTGATT
70649171 TGGAAAATTA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
60 21 0.46
61 25 0.54
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (60 bp):
TGTAAAATTACCAAAATACCCATAACTTGTAAATTACCAAAATACCCCTGATTCTCGACC
Found at i:70649160 original size:26 final size:27
Alignment explanation
Indices: 70649121--70649300 Score: 123
Period size: 27 Copynumber: 6.7 Consensus size: 27
70649111 CTCGACCTGT
* * *
70649121 AAAATTATCAAAATACCCATAACTT-G
1 AAAATTACCGAAATACCCATAATTTGG
* * *
70649147 TAAATTACCGAAATACCCCTGATTTGG
1 AAAATTACCGAAATACCCATAATTTGG
* *
70649174 AAAATTATCGAAATA-CCATTGATTTGG
1 AAAATTACCGAAATACCCA-TAATTTGG
* * **
70649201 AAAATTACAGAAATACCCCTAATTTAT
1 AAAATTACCGAAATACCCATAATTTGG
* * * **
70649228 AAAATTACAGAAATACCCTTGACTTTTA
1 AAAATTACCGAAATACCCAT-AATTTGG
** * *
70649256 AAAATTACAAAAATA-CCATTAGTTTGC
1 AAAATTACCGAAATACCCA-TAATTTGG
70649283 AAAATTACCGAAATACCC
1 AAAATTACCGAAATACCC
70649301 TTGGTTTGTA
Statistics
Matches: 122, Mismatches: 26, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
26 21 0.17
27 78 0.64
28 23 0.19
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCGAAATACCCATAATTTGG
Found at i:70649197 original size:87 final size:88
Alignment explanation
Indices: 70649033--70649197 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 88
70649023 CTCAATTAGC
* *** * *
70649033 AAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAA
1 AAAATTATCAAAATACCCATAACTTGTAAAATTACCAAAATACCCCTGATTTGGAAAATTATCAA
*
70649098 AATACCCCTGATTCTCGACCTGT
66 AATACCACTGATTCTCGACCTGT
* *
70649121 AAAATTATCAAAATACCCATAACTTGT-AAATTACCGAAATACCCCTGATTTGGAAAATTATCGA
1 AAAATTATCAAAATACCCATAACTTGTAAAATTACCAAAATACCCCTGATTTGGAAAATTATCAA
*
70649185 AATACCATTGATT
66 AATACCACTGATT
70649198 TGGAAAATTA
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
87 44 0.66
88 23 0.34
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (88 bp):
AAAATTATCAAAATACCCATAACTTGTAAAATTACCAAAATACCCCTGATTTGGAAAATTATCAA
AATACCACTGATTCTCGACCTGT
Found at i:70649218 original size:54 final size:53
Alignment explanation
Indices: 70649148--70649308 Score: 169
Period size: 54 Copynumber: 3.0 Consensus size: 53
70649138 CATAACTTGT
* * * * *
70649148 AAATTACCGAAATACCCCTGATTTGGAAAATTATCGAAATACCATTGATTTGGA
1 AAATTACAGAAATACCCCTAATTTGCAAAATTA-CGAAATACCCTTGATTTGAA
** *
70649202 AAATTACAGAAATACCCCTAATTTATAAAATTACAGAAATACCCTTGACTTTTAA
1 AAATTACAGAAATACCCCTAATTTGCAAAATTAC-GAAATACCCTTGA-TTTGAA
* ** * *
70649257 AAATTACAAAAATACCATTAGTTTGCAAAATTACCGAAATACCCTTGGTTTG
1 AAATTACAGAAATACCCCTAATTTGCAAAATTA-CGAAATACCCTTGATTTG
70649309 TAGATTTACC
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 44 0.49
55 43 0.48
56 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (53 bp):
AAATTACAGAAATACCCCTAATTTGCAAAATTACGAAATACCCTTGATTTGAA
Found at i:70649713 original size:32 final size:32
Alignment explanation
Indices: 70649663--70649741 Score: 142
Period size: 32 Copynumber: 2.5 Consensus size: 32
70649653 TCATATTTAC
*
70649663 CTGA-GGCTGTGTGCCGACTATATTACCGTCA
1 CTGATGGCTATGTGCCGACTATATTACCGTCA
70649694 CTGATGGCTATGTGCCGACTATATTACCGTCA
1 CTGATGGCTATGTGCCGACTATATTACCGTCA
70649726 CTGATGGCTATGTGCC
1 CTGATGGCTATGTGCC
70649742 TAACATGATA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 4 0.09
32 42 0.91
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.30
Consensus pattern (32 bp):
CTGATGGCTATGTGCCGACTATATTACCGTCA
Found at i:70649814 original size:22 final size:22
Alignment explanation
Indices: 70649781--70649845 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
70649771 GCCAATTATT
* *
70649781 CTGATTATGGCTTTGTGCCAAC
1 CTGAATATGGCTCTGTGCCAAC
*
70649803 CT-ACATATGGCTCTATGCCAAC
1 CTGA-ATATGGCTCTGTGCCAAC
* *
70649825 CTGATTATGGCTGTGTGCCAA
1 CTGAATATGGCTCTGTGCCAA
70649846 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
CTGAATATGGCTCTGTGCCAAC
Found at i:70659457 original size:20 final size:21
Alignment explanation
Indices: 70659434--70659474 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70659424 TTCCTATTAA
70659434 TTATTTAC-ATTTCTAATTTT
1 TTATTTACTATTTCTAATTTT
* *
70659454 TTATTTTCTTTTTCTAATTTT
1 TTATTTACTATTTCTAATTTT
70659475 CCATGGATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.71
Consensus pattern (21 bp):
TTATTTACTATTTCTAATTTT
Found at i:70666043 original size:27 final size:27
Alignment explanation
Indices: 70666003--70666147 Score: 125
Period size: 27 Copynumber: 5.3 Consensus size: 27
70665993 GATGGGTCAT
* *
70666003 AAATACCCTCGATTTGTAAAATTACCA
1 AAATACCCTTGATTTGTAAAATTACCG
70666030 AAATACCCTTGATTTGTAAAATTACCG
1 AAATACCCTTGATTTGTAAAATTACCG
* * *
70666057 AAATA-CCTCTGGTTTGTAAAATGATC-
1 AAATACCCT-TGATTTGTAAAATTACCG
* * ** *
70666083 ATAATGCCCCTG-TAAGGTAAAATGACCG
1 A-AATACCCTTGAT-TTGTAAAATTACCG
**
70666111 AAATACCCTTGAAGTGTAAAATTACCG
1 AAATACCCTTGATTTGTAAAATTACCG
70666138 AAATATCCCT
1 AAATA-CCCT
70666148 ATAGAGCAAA
Statistics
Matches: 95, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
26 5 0.05
27 83 0.87
28 7 0.07
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (27 bp):
AAATACCCTTGATTTGTAAAATTACCG
Found at i:70666174 original size:81 final size:81
Alignment explanation
Indices: 70666018--70666189 Score: 179
Period size: 81 Copynumber: 2.1 Consensus size: 81
70666008 CCCTCGATTT
* ** * ** *
70666018 GTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCTCTGGTTTGTAAAATGATC
1 GTAAAATGACCAAAATACCCTTGAAGTGTAAAATTACCGAAATACCTCTGATGAGCAAAATGATC
* *
70666083 ATAATGCCCCTGTAAG
66 ATAATACCCCTATAAG
*
70666099 GTAAAATGACCGAAATACCCTTGAAGTGTAAAATTACCGAAATATCC-CT-ATAGAGCAAAATGA
1 GTAAAATGACCAAAATACCCTTGAAGTGTAAAATTACCGAAATA-CCTCTGAT-GAGCAAAATGA
* *
70666162 -CTGTAATACCCCTATATG
64 TC-ATAATACCCCTATAAG
*
70666180 GTAATATGAC
1 GTAAAATGAC
70666190 GATTATGCCC
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 2 0.03
81 71 0.95
82 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.28
Consensus pattern (81 bp):
GTAAAATGACCAAAATACCCTTGAAGTGTAAAATTACCGAAATACCTCTGATGAGCAAAATGATC
ATAATACCCCTATAAG
Found at i:70673081 original size:28 final size:28
Alignment explanation
Indices: 70673045--70673139 Score: 136
Period size: 28 Copynumber: 3.4 Consensus size: 28
70673035 AAAATAGCCT
* * *
70673045 CACATGCTCGTGTCATACACAGCTAAAA
1 CACACGCTCGTGTCATACACGGCTGAAA
*
70673073 CACACGCTCGTGTAATACACGGCTGAAA
1 CACACGCTCGTGTCATACACGGCTGAAA
*
70673101 CACACGCCCGTGTCATACACGGCTGAAA
1 CACACGCTCGTGTCATACACGGCTGAAA
*
70673129 CACACACTCGT
1 CACACGCTCGT
70673140 ATCTCAGGCC
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.32, C:0.33, G:0.18, T:0.18
Consensus pattern (28 bp):
CACACGCTCGTGTCATACACGGCTGAAA
Found at i:70673969 original size:21 final size:21
Alignment explanation
Indices: 70673940--70674066 Score: 159
Period size: 21 Copynumber: 6.0 Consensus size: 21
70673930 TGAACATGGC
70673940 AACAGAAGCTCGAAAGAGCTG
1 AACAGAAGCTCGAAAGAGCTG
* *
70673961 AACAAAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGAAAGAGCTG
70673982 AACAGAAGCTCGTAAA-AGCTG
1 AACAGAAGCTCG-AAAGAGCTG
* * *
70674003 AATAGAAGCTCGTAAGAGCTA
1 AACAGAAGCTCGAAAGAGCTG
* *
70674024 AATAGAAGCTC-AAATGAGCTA
1 AACAGAAGCTCGAAA-GAGCTG
70674045 AACAGAAGCTCGAAAGAGCTG
1 AACAGAAGCTCGAAAGAGCTG
70674066 A
1 A
70674067 TCCACACGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
20 4 0.04
21 83 0.90
22 5 0.05
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.14
Consensus pattern (21 bp):
AACAGAAGCTCGAAAGAGCTG
Found at i:70678038 original size:21 final size:22
Alignment explanation
Indices: 70677998--70678038 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
70677988 AAATAAACTA
*
70677998 AAAACTAGAACCTTAAGAAAAC
1 AAAACTAGAACCTAAAGAAAAC
*
70678020 AAAACTA-AATCTAAAGAAA
1 AAAACTAGAACCTAAAGAAA
70678039 GAAACTAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.63, C:0.15, G:0.07, T:0.15
Consensus pattern (22 bp):
AAAACTAGAACCTAAAGAAAAC
Found at i:70681246 original size:123 final size:124
Alignment explanation
Indices: 70681025--70681248 Score: 317
Period size: 123 Copynumber: 1.8 Consensus size: 124
70681015 GAATTATGTG
* * * * * * *
70681025 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATTGATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
70681090 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
70681149 AAATGAAATATGAATGTCTAATGATTATTGA-TGATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATTGATGTGTGCATGAGCAATTGAATGATACCCGG
70681213 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
70681249 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
122 1 0.01
123 58 0.67
124 28 0.32
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATTGATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:70681370 original size:40 final size:40
Alignment explanation
Indices: 70681243--70681372 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
70681233 ATGCTGGAAA
* *
70681243 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
70681283 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70681323 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70681363 TTATATCCGG
1 TTATATCCGG
70681373 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70681371 original size:80 final size:80
Alignment explanation
Indices: 70681205--70681372 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
70681195 CAATTGAATG
* * *
70681205 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
70681270 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
70681285 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
70681349 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
70681365 ATATCCGG
1 ATATCCGG
70681373 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:70687423 original size:40 final size:40
Alignment explanation
Indices: 70687378--70687544 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
70687368 CGGAATATAA
70687378 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70687418 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
70687458 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
70687498 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70687537 CCGGATAT
1 CCGGATAT
70687545 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70695396 original size:40 final size:40
Alignment explanation
Indices: 70695351--70695518 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
70695341 CGGAATATAA
70695351 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70695391 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
70695431 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
70695471 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70695511 CCGGATAT
1 CCGGATAT
70695519 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70699274 original size:124 final size:124
Alignment explanation
Indices: 70699052--70699276 Score: 308
Period size: 124 Copynumber: 1.8 Consensus size: 124
70699042 GAATTATGTG
* * * ** * * *
70699052 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * * **
70699117 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCAAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
70699176 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
70699241 GCTAAGTCCCAAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCAAAGACGA-TTATGCTGGAAATTATAT
70699277 CCGGTTAAGA
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 1 0.01
124 85 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCAAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:70699397 original size:40 final size:40
Alignment explanation
Indices: 70699271--70699399 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
70699261 ATGCTGGAAA
* *
70699271 TTATATCC-GGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * * **
70699310 CTACATCCAGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70699350 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70699390 TTATATCCGG
1 TTATATCCGG
70699400 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
39 10 0.14
40 64 0.86
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70709688 original size:25 final size:24
Alignment explanation
Indices: 70709654--70709707 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
70709644 AATAATAATT
*
70709654 ATTAATAATTCAAT-GAATTGAAAA
1 ATTAATAATTCAATAAAATT-AAAA
*
70709678 ATTAACTAATTGAATAAAATTAAAA
1 ATTAA-TAATTCAATAAAATTAAAA
70709703 ATTAA
1 ATTAA
70709708 GAGAAAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 17 0.65
26 4 0.15
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (24 bp):
ATTAATAATTCAATAAAATTAAAA
Found at i:70712221 original size:40 final size:40
Alignment explanation
Indices: 70712144--70712324 Score: 249
Period size: 40 Copynumber: 4.5 Consensus size: 40
70712134 ACCCAAGTAT
*
70712144 CTTCGGGACTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
70712183 CTTCGGGTCTTAGCCCAGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
70712223 CTTCGGGATTTAGCCCGGATATAATCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
70712263 CTTCGGGACTTAGCCCGGGTATAGTAACTTGAACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
70712303 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
70712325 CATCCGAATA
Statistics
Matches: 124, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 12 0.10
40 111 0.90
41 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:70716502 original size:13 final size:13
Alignment explanation
Indices: 70716484--70716510 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70716474 ACCATCCTCT
70716484 TTGTCATAGTAGA
1 TTGTCATAGTAGA
70716497 TTGTCATAGTAGA
1 TTGTCATAGTAGA
70716510 T
1 T
70716511 GATTCTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (13 bp):
TTGTCATAGTAGA
Found at i:70724017 original size:43 final size:42
Alignment explanation
Indices: 70723954--70724040 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 42
70723944 TGATGATGCC
*
70723954 AAAAAAGAAGTGGCCGAAGGAAGCCAAGGGAAACTATGGAAG
1 AAAAAAGAAGTGGCCAAAGGAAGCCAAGGGAAACTATGGAAG
*
70723996 AAAAAAGAAGGTGTCCAAAGGAAGCCAAGGGAAACTATGGAAG
1 AAAAAAGAA-GTGGCCAAAGGAAGCCAAGGGAAACTATGGAAG
70724039 AA
1 AA
70724041 TTTAGAGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
42 9 0.21
43 33 0.79
ACGTcount: A:0.49, C:0.11, G:0.31, T:0.08
Consensus pattern (42 bp):
AAAAAAGAAGTGGCCAAAGGAAGCCAAGGGAAACTATGGAAG
Found at i:70729809 original size:40 final size:40
Alignment explanation
Indices: 70729747--70729924 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
70729737 AAGCCAAGTA
* * * *
70729747 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
70729786 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
70729826 CCTTCGGGACTTAGCCAAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70729866 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70729906 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70729925 TTATCATCCA
Statistics
Matches: 127, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.09
40 115 0.91
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70731199 original size:6 final size:6
Alignment explanation
Indices: 70731181--70731217 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
70731171 CATGAGAGCC
*
70731181 TTTCTT TTT-TT TTTCTT TTTCTT TCTC-T TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
70731218 TTCATCATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 9 0.33
6 18 0.67
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTCTT
Found at i:70731203 original size:17 final size:17
Alignment explanation
Indices: 70731181--70731217 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
70731171 CATGAGAGCC
* *
70731181 TTTCTTTTTTTTTTCTT
1 TTTCTTTCTCTTTTCTT
70731198 TTTCTTTCTCTTTTCTT
1 TTTCTTTCTCTTTTCTT
70731215 TTT
1 TTT
70731218 TTCATCATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTCTTTCTCTTTTCTT
Found at i:70737378 original size:24 final size:24
Alignment explanation
Indices: 70737345--70737429 Score: 152
Period size: 24 Copynumber: 3.5 Consensus size: 24
70737335 AATCTCAAAT
70737345 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
70737369 GCACTGTGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
70737393 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
70737417 GCACTATGTGTGC
1 GCACTATGTGTGC
70737430 AAACATAATA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:70737444 original size:48 final size:48
Alignment explanation
Indices: 70737345--70737453 Score: 157
Period size: 48 Copynumber: 2.3 Consensus size: 48
70737335 AATCTCAAAT
* * ** *
70737345 GCACTATGTGTGCGATTTACTATGGCACTGTGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCAACATAATATA
70737393 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCAAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGC-AACATAATATA
70737441 GCACTATGTGTGC
1 GCACTATGTGTGC
70737454 AACGTTTGGT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 50 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCAACATAATATA
Found at i:70740923 original size:40 final size:40
Alignment explanation
Indices: 70740862--70741119 Score: 403
Period size: 40 Copynumber: 6.5 Consensus size: 40
70740852 AAGCCAAGTA
* * * *
70740862 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
70740901 CCTTCAGGACATAGCCCAGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70740941 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70740981 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70741021 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70741061 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70741101 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70741120 TTATCATCCA
Statistics
Matches: 202, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 11 0.05
40 191 0.95
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70743336 original size:42 final size:42
Alignment explanation
Indices: 70743217--70743377 Score: 180
Period size: 42 Copynumber: 3.8 Consensus size: 42
70743207 CACTCGATAC
* * *
70743217 CATACCAATGCCATATCCCAAATATGGTCTTACATGTAATCT
1 CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
** * * **
70743259 TGTATCGATGCCAATAGCCCAGCTATGGTCTTACACGAAATCT
1 CATATCAATGCC-ATATCCCAAATATGGTCTTACACGAAATCT
*
70743302 CATATCAATGCCATATCCCAAATATGGTCTTACACGAAGTCT
1 CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
* * *
70743344 CATA-CTGATGCCATATCCTAGATATGGTCTTACA
1 CATATC-AATGCCATATCCCAAATATGGTCTTACA
70743378 TGTAGTCCTA
Statistics
Matches: 98, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
41 1 0.01
42 63 0.64
43 34 0.35
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
Found at i:70743354 original size:85 final size:84
Alignment explanation
Indices: 70743217--70743377 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 84
70743207 CACTCGATAC
* ** *
70743217 CATACCAATGCCATATCCCAAATATGGTCTTACATGTAATCTTGTATCGATGCCAATAGCCCAGC
1 CATACCAATGCCATATCCCAAATATGGTCTTACACGTAATCTCATATCGATGCC-ATAGCCCAGA
70743282 TATGGTCTTACACGAAATCT
65 TATGGTCTTACACGAAATCT
* * *
70743302 CATATCAATGCCATATCCCAAATATGGTCTTACACG-AAGTCTCATA-CTGATGCCATATCCTAG
1 CATACCAATGCCATATCCCAAATATGGTCTTACACGTAA-TCTCATATC-GATGCCATAGCCCAG
70743365 ATATGGTCTTACA
64 ATATGGTCTTACA
70743378 TGTAGTCCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
84 22 0.33
85 45 0.67
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (84 bp):
CATACCAATGCCATATCCCAAATATGGTCTTACACGTAATCTCATATCGATGCCATAGCCCAGAT
ATGGTCTTACACGAAATCT
Found at i:70748039 original size:20 final size:20
Alignment explanation
Indices: 70748014--70748062 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
70748004 GGGTCATGCG
70748014 CCCATGTGGCTTGCGACACA
1 CCCATGTGGCTTGCGACACA
* *
70748034 CCCATGTGGCTTGGGACACG
1 CCCATGTGGCTTGCGACACA
*
70748054 CCCACGTGG
1 CCCATGTGG
70748063 GCAGGCCGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.16, C:0.35, G:0.31, T:0.18
Consensus pattern (20 bp):
CCCATGTGGCTTGCGACACA
Found at i:70753741 original size:29 final size:29
Alignment explanation
Indices: 70753686--70753741 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
70753676 AGTAAAATTT
**
70753686 GGGCCTAAGCCCCTTTTTAGTTTCAGTTA
1 GGGCCTAAGCCCCTTTTTAGTAGCAGTTA
*
70753715 GGGCCTTAG-CCCTTTTTCAGTAGCAGT
1 GGGCCTAAGCCCCTTTTT-AGTAGCAGT
70753742 AGCAGTCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (29 bp):
GGGCCTAAGCCCCTTTTTAGTAGCAGTTA
Found at i:70758296 original size:34 final size:33
Alignment explanation
Indices: 70758235--70758317 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 33
70758225 TGTATGCATT
70758235 ACTGATACTGTACTAAATTGGGCTAAGGCCCAC
1 ACTGATACTGTACTAAATTGGGCTAAGGCCCAC
*
70758268 ACTGATACTGTTACCTTAA-TGGGCTAAGGCCCAC
1 ACTGATACTG-TA-CTAAATTGGGCTAAGGCCCAC
* *
70758302 ATTGATAATGCTACTA
1 ACTGATACTG-TACTA
70758318 TTAAGGGCTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
33 12 0.28
34 27 0.63
35 4 0.09
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (33 bp):
ACTGATACTGTACTAAATTGGGCTAAGGCCCAC
Found at i:70758326 original size:34 final size:34
Alignment explanation
Indices: 70758253--70758326 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
70758243 TGTACTAAAT
* * *
70758253 TGGGCTAAGGCCCACACTGATACTGTTACCTTAA
1 TGGGCTAAGGCCCACACTGATAATGCTACATTAA
*
70758287 TGGGCTAAGGCCCACATTGATAATGCTACTATTAA
1 TGGGCTAAGGCCCACACTGATAATGCTAC-ATTAA
70758322 -GGGCT
1 TGGGCT
70758327 TAGACCTAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 31 0.89
35 4 0.11
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (34 bp):
TGGGCTAAGGCCCACACTGATAATGCTACATTAA
Found at i:70765278 original size:40 final size:39
Alignment explanation
Indices: 70765110--70765295 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 39
70765100 AGAAATTGAA
* *
70765110 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
70765150 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
70765190 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
70765230 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* * *
70765270 TGATATCCGGGTTAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
70765296 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 4 0.03
40 107 0.90
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:70769313 original size:15 final size:15
Alignment explanation
Indices: 70769281--70769309 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70769271 ATTTTATGTG
70769281 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
70769296 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
70769310 ATTTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:70769537 original size:22 final size:22
Alignment explanation
Indices: 70769504--70769548 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
70769494 GTTTTGTTAT
70769504 TAAATTATTAAGGTTAA-ATATG
1 TAAATTATTAA-GTTAATATATG
70769526 TAAATTGA-TAAGTTAATATATG
1 TAAATT-ATTAAGTTAATATATG
70769548 T
1 T
70769549 TATAATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.24
22 15 0.71
23 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.42
Consensus pattern (22 bp):
TAAATTATTAAGTTAATATATG
Found at i:70770482 original size:43 final size:43
Alignment explanation
Indices: 70770434--70770602 Score: 157
Period size: 43 Copynumber: 4.0 Consensus size: 43
70770424 TAGGATTTTT
* * * *
70770434 GATATGTGTTCTCGTATAAAACCATGTCTGGGATGTTGGCATC
1 GATATGTGATATCGTGTAAGACCATGTCTGGGATGTTGGCATC
* ** **
70770477 GATATGTGATTAT-GTGTAAGACCATGTTTGGGACATCAGCATC
1 GATATGTGA-TATCGTGTAAGACCATGTCTGGGATGTTGGCATC
* *
70770520 G-TATTTGAT-TCGTGTAAGACCCTGTCTGGGATAG-TGGCATC
1 GATATGTGATATCGTGTAAGACCATGTCTGGGAT-GTTGGCATC
* * * *
70770561 TATATGTGATAGCATGTAAGACCACGTCTGGGATGTTGGCAT
1 GATATGTGATATCGTGTAAGACCATGTCTGGGATGTTGGCAT
70770603 TGTACAAGAT
Statistics
Matches: 98, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
40 1 0.01
41 24 0.24
42 14 0.14
43 57 0.58
44 2 0.02
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
GATATGTGATATCGTGTAAGACCATGTCTGGGATGTTGGCATC
Found at i:70770902 original size:14 final size:14
Alignment explanation
Indices: 70770883--70770912 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70770873 GAAATGATTC
70770883 ATGAATATATGTAT
1 ATGAATATATGTAT
*
70770897 ATGAATTTATGTAT
1 ATGAATATATGTAT
70770911 AT
1 AT
70770913 TCAGTTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (14 bp):
ATGAATATATGTAT
Found at i:70774599 original size:34 final size:34
Alignment explanation
Indices: 70774518--70774617 Score: 98
Period size: 34 Copynumber: 2.9 Consensus size: 34
70774508 ATTCTTTGTT
70774518 TGCATACTGTACTGAAATAGGCTAAGGCCCAGAC
1 TGCATACTGTACTGAAATAGGCTAAGGCCCAGAC
* * * *
70774552 TGCAT-CTATTACTGAAATGGGCTCAGGCCTAGAC
1 TGCATACT-GTACTGAAATAGGCTAAGGCCCAGAC
70774586 TG-ATACTGCTACTGAGAA-AGGGGCTAAGGCCC
1 TGCATACTG-TACTGA-AATA--GGCTAAGGCCC
70774618 TAACTGGAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
33 4 0.08
34 37 0.71
35 2 0.04
36 9 0.17
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (34 bp):
TGCATACTGTACTGAAATAGGCTAAGGCCCAGAC
Found at i:70775795 original size:25 final size:24
Alignment explanation
Indices: 70775767--70775820 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
70775757 ACAGAATAAT
* * *
70775767 GGTAAGCTCATATGAGTTGAGTATC
1 GGTAAGCTCATAAGAGCTGA-AATC
70775792 GGTAAGCTCATAAGAGCTGAAATC
1 GGTAAGCTCATAAGAGCTGAAATC
70775816 GGTAA
1 GGTAA
70775821 CCCTAATGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (24 bp):
GGTAAGCTCATAAGAGCTGAAATC
Found at i:70792473 original size:43 final size:42
Alignment explanation
Indices: 70792416--70792579 Score: 165
Period size: 43 Copynumber: 3.8 Consensus size: 42
70792406 AATGCCAACA
* *
70792416 TCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTG
1 TCCCAGACAGGGTCTTACACGTAATCAAATATCGATGCCA-TG
* *
70792459 TCCCAGACAGGGTCTTACACGAAATCAAATA-CGATGTCGATG
1 TCCCAGACAGGGTCTTACACGTAATCAAATATCGATG-CCATG
* *
70792501 TCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAATG
1 TCCCAGACAGGGTCTTACACGT-AATC-AAATATCGATGCC-ATG
* *
70792545 TCCCAAAC-GTGGTCTTACACGATAA-CACATATCGA
1 TCCCAGACAG-GGTCTTACACG-TAATCAAATATCGA
70792580 AGTCCTATGT
Statistics
Matches: 101, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
42 28 0.28
43 42 0.42
44 30 0.30
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGTAATCAAATATCGATGCCATG
Found at i:70803625 original size:40 final size:40
Alignment explanation
Indices: 70803580--70803746 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
70803570 CGGAATATAA
70803580 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70803620 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
70803660 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
70803700 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70803739 CCGGATAT
1 CCGGATAT
70803747 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70811639 original size:40 final size:40
Alignment explanation
Indices: 70811594--70811761 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
70811584 CGGAATATAA
70811594 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70811634 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
70811674 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
70811714 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70811754 CCGGATAT
1 CCGGATAT
70811762 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70820042 original size:21 final size:22
Alignment explanation
Indices: 70820018--70820065 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
70820008 TTTGAAGAAT
*
70820018 TTCACTA-TTTTTACAT-TACAA
1 TTCACTAGTCTTT-CATCTACAA
*
70820039 TTCAATAGTCTTTCATCTACAA
1 TTCACTAGTCTTTCATCTACAA
70820061 TTCAC
1 TTCAC
70820066 AACAGCATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.31, C:0.23, G:0.02, T:0.44
Consensus pattern (22 bp):
TTCACTAGTCTTTCATCTACAA
Found at i:70821346 original size:46 final size:47
Alignment explanation
Indices: 70821293--70821460 Score: 234
Period size: 46 Copynumber: 3.6 Consensus size: 47
70821283 TGATATGTGT
70821293 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCTACATTATGAG-A
1 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCTACATTATGAGAA
70821339 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCTACATTATGAGAA
1 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCTACATTATGAGAA
* * ** *
70821386 GCTAGTGTAAGAAATGTCTGGGACATGCATCGGCCT-CGAGACAT-ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCACCGG-CTAC-A-TTATGAGAA
*
70821434 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
70821461 GCATCAGCTT
Statistics
Matches: 111, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
46 45 0.41
47 33 0.30
48 31 0.28
49 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCACCGGCTACATTATGAGAA
Found at i:70821604 original size:49 final size:48
Alignment explanation
Indices: 70821293--70821606 Score: 226
Period size: 49 Copynumber: 6.6 Consensus size: 48
70821283 TGATATGTGT
* * * *
70821293 GCTAGTGTAAGACATGTCTGGGACAT-GCACCG-GCTAC-ATTATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCT-CGATTATGAAA
* * *
70821339 GCTAGTGTAAGACATGTCTGGGACAT-GCACCG-GCTAC-ATTATGAGAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCT-CGATTATGA-AA
** * **
70821386 GCTAGTGTAAGAAATGTCTGGGACAT-GCATCGGCCTCGAGACAT-ACAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGA-TTATGA-AA
* * * *
70821434 GCTAGTGTAAGACCTGTCTGGGACATGGCATC-AGCTTG-TTGTG--T
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATTATGAAA
* * * *
70821478 G-TCAGTGTAAGACCTGTCTAGGACATGGAATCGACAC-CGATAGATGAGA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGAT-TATGAAA
*
70821527 G-TCAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATATATGAAA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGAT-TATGAAA
* *
70821576 GTTAGTGTAAGACCTATCTGGGACATGGCAT
1 GCTAGTGTAAGACCTGTCTGGGACATGGCAT
70821607 TAACTTTGAT
Statistics
Matches: 225, Mismatches: 28, Indels: 27
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.00
44 28 0.12
45 2 0.01
46 47 0.21
47 34 0.15
48 34 0.15
49 78 0.35
50 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATTATGAAA
Found at i:70831833 original size:49 final size:49
Alignment explanation
Indices: 70831774--70831902 Score: 163
Period size: 49 Copynumber: 2.6 Consensus size: 49
70831764 TTGTGTGTCG
70831774 GTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGAT-AAGAGCCA
1 GTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAA-AGCCA
* * * * *
70831823 GTGTAAGACCTGTCTGGGACACGGCATCGGCGTCGATATATGAAAGTCA
1 GTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCA
* *
70831872 GTGTAAAACCTATCTGGGACATGGCATCGAC
1 GTGTAAGACCTGTCTGGGACATGGCATCGAC
70831903 TTTAATGTGC
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 1 0.01
49 66 0.96
50 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (49 bp):
GTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCCA
Found at i:70838353 original size:19 final size:19
Alignment explanation
Indices: 70838328--70838390 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
70838318 TAAATTTTAA
70838328 AATTTTTATTTTTATTTTT
1 AATTTTTATTTTTATTTTT
* **
70838347 CATTTTTATCTTTT-CCTTT
1 AATTTTTAT-TTTTATTTTT
*
70838366 AATTTTTA-TTTTAATTTT
1 AATTTTTATTTTTATTTTT
70838384 AATTTTT
1 AATTTTT
70838391 TTATGTTTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
17 4 0.11
18 10 0.28
19 18 0.50
20 4 0.11
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (19 bp):
AATTTTTATTTTTATTTTT
Found at i:70838360 original size:7 final size:6
Alignment explanation
Indices: 70838329--70838390 Score: 61
Period size: 6 Copynumber: 10.0 Consensus size: 6
70838319 AAATTTTAAA
** * *
70838329 ATTTTT ATTTTT ATTTTT CATTTTT ATCTTTT CCTTTA ATTTTT ATTTTA
1 ATTTTT ATTTTT ATTTTT -ATTTTT AT-TTTT ATTTTT ATTTTT ATTTTT
*
70838379 ATTTTA ATTTTT
1 ATTTTT ATTTTT
70838391 TTATGTTTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
6 36 0.78
7 10 0.22
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.74
Consensus pattern (6 bp):
ATTTTT
Found at i:70843340 original size:9 final size:9
Alignment explanation
Indices: 70843306--70843340 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
70843296 TCTCGTGTAC
70843306 TGGGCCTCAA
1 TGGGCC-CAA
*
70843316 TGGGCCAAA
1 TGGGCCCAA
70843325 TGGGCCCAA
1 TGGGCCCAA
70843334 TGGGCCC
1 TGGGCCC
70843341 GTGGGCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.20, C:0.31, G:0.34, T:0.14
Consensus pattern (9 bp):
TGGGCCCAA
Done.