Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 228 of 433
Found at i:71090180 original size:48 final size:48
Alignment explanation
Indices: 71090122--71090587 Score: 784
Period size: 48 Copynumber: 9.9 Consensus size: 48
71090112 ATATACACAC
* *
71090122 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
71090170 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
71090218 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACTACATATACAC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
71090266 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
71090314 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
71090362 ATCTCATACATATTTCACATTAGCCATTCGGC-TT------TATACAC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
71090403 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
71090451 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
71090499 ATCTCATATATATTTCACATTAGCCATTCGGTTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
71090547 ATCTCATACATATTTCACATAAGCCATTCGGCTTTATCACA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
71090588 CACATATATA
Statistics
Matches: 399, Mismatches: 12, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
41 39 0.10
42 2 0.01
47 2 0.01
48 356 0.89
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:71090458 original size:89 final size:89
Alignment explanation
Indices: 71090307--71090589 Score: 449
Period size: 89 Copynumber: 3.1 Consensus size: 89
71090297 CTTTACCACA
*
71090307 TATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACACATCTCATACA
1 TATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
71090372 TATTTCACATTAGCCATTCGGCTT
66 TATTTCACATTAGCCATTCGGCTT
71090396 TATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
71090461 TATTTCACATTAGCCATTCGGCTTT
66 TATTTCACATTAGCCATTCGGC-TT
* * *
71090486 ACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGTTTTACCACATATACATATCT
1 ------TATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
*
71090551 CATACATATTTCACATAAGCCATTCGGCTT
60 CATACATATTTCACATTAGCCATTCGGCTT
71090581 TATCACACA
1 TAT-ACACA
71090590 CATATATATT
Statistics
Matches: 180, Mismatches: 6, Indels: 15
0.90 0.03 0.07
Matches are distributed among these distances:
89 89 0.49
90 6 0.03
95 2 0.01
96 83 0.46
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (89 bp):
TATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
TATTTCACATTAGCCATTCGGCTT
Found at i:71094166 original size:29 final size:29
Alignment explanation
Indices: 71094113--71094242 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
71094103 TGATTTCGCA
* * *
71094113 CACACATAGCG-CTCGATTATAGAACTCG
1 CACACATAGTGCCTCAATTAAAGAACTCG
71094141 CACACATAGTGCCTCAATTAAAGAACTCG
1 CACACATAGTGCCTCAATTAAAGAACTCG
* *
71094170 CACACATAGTGCCTCAATTACCA-ATCTCG
1 CACACATAGTGCCTCAATTA-AAGAACTCG
* * * *
71094199 CACACATAGCG-CTCGATTGAAGAACTTG
1 CACACATAGTGCCTCAATTAAAGAACTCG
*
71094227 CACACACAGTGCCTCA
1 CACACATAGTGCCTCA
71094243 TAATTCCAGC
Statistics
Matches: 84, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
27 1 0.01
28 29 0.35
29 53 0.63
30 1 0.01
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.21
Consensus pattern (29 bp):
CACACATAGTGCCTCAATTAAAGAACTCG
Found at i:71094315 original size:40 final size:40
Alignment explanation
Indices: 71094248--71094444 Score: 272
Period size: 40 Copynumber: 5.0 Consensus size: 40
71094238 CCTCATAATT
*
71094248 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCA
* *
71094287 CTAGCACGAATGCTCTTCGGGACTTAGCCCAGATATATCA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* * * *
71094327 CTAGCACGAATGCTCTTCAGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* * *
71094367 CCAGCATGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
71094407 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
71094445 AACTCTCAAT
Statistics
Matches: 142, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.10
40 128 0.90
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
Found at i:71102688 original size:2 final size:2
Alignment explanation
Indices: 71102681--71102708 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
71102671 ATGTAAGCCC
71102681 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71102709 GGCATTGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71104728 original size:37 final size:37
Alignment explanation
Indices: 71104675--71104814 Score: 219
Period size: 37 Copynumber: 3.8 Consensus size: 37
71104665 CGAATAGTCC
* *
71104675 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
71104712 CCACACGTAGTCATCGGGTCTTA-CCGAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCG-GACATAATCT
*
71104749 CCACACATAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
* *
71104786 CCACACGTAGCCATTGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
71104815 ATATATTTCC
Statistics
Matches: 95, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
36 3 0.03
37 89 0.94
38 3 0.03
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:71105013 original size:48 final size:48
Alignment explanation
Indices: 71104951--71105287 Score: 566
Period size: 48 Copynumber: 6.9 Consensus size: 48
71104941 CACAATATAC
* *
71104951 ACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
*
71104999 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
*
71105047 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
*
71105095 ATACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
71105143 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
*
71105191 ACACATCTCATTCATATTTATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCA-T-ACA--TATTTCACATTAGCCATTCGGCTTTACCACATAT
* *
71105243 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTATCACA
1 ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
71105288 CACATATATA
Statistics
Matches: 275, Mismatches: 10, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
48 226 0.82
49 1 0.00
50 4 0.01
51 1 0.00
52 43 0.16
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
Found at i:71109927 original size:112 final size:112
Alignment explanation
Indices: 71109730--71109945 Score: 288
Period size: 112 Copynumber: 1.9 Consensus size: 112
71109720 ACAACGGAAC
71109730 ATAAATGATGAATTACATTTTATTCAAGACCGAAACCATCGTGTCCTACAAACTGAAAAAGACCA
1 ATAAATGATGAATTACATTTTATTCAAGACCGAAACCATCGTGTCCTACAAACTGAAAAAGACCA
*
71109795 TGTTTAACAGCAACACGAGCAAGTTTCTAAATACTAATAAAACAAAA
66 TGTTTAACAGCAACACGAGCAACTTTCTAAATACTAATAAAACAAAA
** * * * * * * * *
71109842 ATAAATGATGAATTTGATTTTGTTCCAGATCGATACCATTGTGTCTTACAAATTGAAAAATACCA
1 ATAAATGATGAATTACATTTTATTCAAGACCGAAACCATCGTGTCCTACAAACTGAAAAAGACCA
* ** * *
71109907 TTTTTAATGGCAACATGAGCAACTTTCTTAATACTAATA
66 TGTTTAACAGCAACACGAGCAACTTTCTAAATACTAATA
71109946 TTTGAGATAA
Statistics
Matches: 88, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
112 88 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (112 bp):
ATAAATGATGAATTACATTTTATTCAAGACCGAAACCATCGTGTCCTACAAACTGAAAAAGACCA
TGTTTAACAGCAACACGAGCAACTTTCTAAATACTAATAAAACAAAA
Found at i:71111596 original size:2 final size:2
Alignment explanation
Indices: 71111589--71111621 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
71111579 CGGTTTCCGC
71111589 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
71111622 AGGGGGGGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:71116697 original size:28 final size:29
Alignment explanation
Indices: 71116666--71116722 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
71116656 TATGAGTCCT
* *
71116666 AAGGTTTTAGTCT-CCTTTTATGAGCTGA
1 AAGGTTTCAGTCTCCCTTTGATGAGCTGA
71116694 AAGGTTTCAGTCTCCCTTTGATGAGCTGA
1 AAGGTTTCAGTCTCCCTTTGATGAGCTGA
71116723 GCTATCAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 12 0.46
29 14 0.54
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.39
Consensus pattern (29 bp):
AAGGTTTCAGTCTCCCTTTGATGAGCTGA
Found at i:71122612 original size:8 final size:8
Alignment explanation
Indices: 71122601--71122626 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
71122591 GATTGATTGA
71122601 TAGATAGG
1 TAGATAGG
71122609 TAGATAGG
1 TAGATAGG
71122617 TAGATAGG
1 TAGATAGG
71122625 TA
1 TA
71122627 TTTGATGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.35, T:0.27
Consensus pattern (8 bp):
TAGATAGG
Found at i:71123331 original size:18 final size:19
Alignment explanation
Indices: 71123306--71123356 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
71123296 TGAAAATAAC
71123306 ACTTATAATTAATAAAAGT
1 ACTTATAATTAATAAAAGT
* * *
71123325 -TTTATAATTGAT-GAAGT
1 ACTTATAATTAATAAAAGT
71123342 ACTTATAATTAATAA
1 ACTTATAATTAATAA
71123357 TATTAAAACT
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (19 bp):
ACTTATAATTAATAAAAGT
Found at i:71125149 original size:3 final size:3
Alignment explanation
Indices: 71125141--71125203 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
71125131 ATAAATCTAG
71125141 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
71125189 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
71125204 TTACTTGTTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:71136916 original size:44 final size:44
Alignment explanation
Indices: 71136868--71137720 Score: 279
Period size: 44 Copynumber: 19.4 Consensus size: 44
71136858 ACGGTGAGCT
* *
71136868 TTATCCCCCTAAGTAGTAGGGAAACAGGCTAGAAATTACAGATC
1 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
* * * * * *
71136912 TTATCTCCCTAACCAGTAGTGG-AGCA-GATCG-AA-GACGATGAGTC
1 TTATCCCCCTAAGCAGTAG-GGAAACAGGCTGGAAATTAC-A-GA-TC
71136956 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
1 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
* * * * * *
71137000 TTATCTCCCTAA-CTAGTAGTGG-AGCA-GATCG-AA-TACGGTAAGCC
1 TTATCCCCCTAAGC-AGTAG-GGAAACAGGCTGGAAATTACAG--A-TC
71137044 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
1 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
* * * * * *
71137088 TTATCTCCGTAAGCAGTAGTGG-AACA-GAT-CAAA-GACAGTGAGCC
1 TTATCCCCCTAAGCAGTAG-GGAAACAGGCTGGAAATTACA--GA-TC
*
71137132 TTATCCCCCTAAGCAGCAGGGAAACAGGCTGGAAATTACAGATC
1 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
* * ** * * * * *
71137176 TTATCTCCCTAACCAGTAGTGG-AGTA-GAT-CAAA-GACGGTGAGCC
1 TTATCCCCCTAAGCAGTAG-GGAAACAGGCTGGAAATTAC--AGA-TC
* * **
71137220 TTATCCCCCTAAACAATAGGGAAACAGGCTAAAAATTACAGATC
1 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
* * * * * * *
71137264 TTATCTCCCTAACCAGTAGTGG-AGCA-GATCG-AA-GACAGTAAGCC
1 TTATCCCCCTAAGCAGTAG-GGAAACAGGCTGGAAATTACAG--A-TC
* *
71137308 TTATCCCCCTAA-CAATAGGGAAACAGGCTGAAAATTACAGATC
1 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
* * * * * * *
71137351 TTATCTCCCTAACCAGTAGTGG-AGCA-GATCG-AA-GACAGTAAGCC
1 TTATCCCCCTAAGCAGTAG-GGAAACAGGCTGGAAATTACAG--A-TC
* * * *
71137395 TTAT-CCCCTAAGCAGTAAGGAAATAGGCTGAAAATTACAGATA
1 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
* * * * * * * *
71137438 TTATCTCCCTAAGTAGTAGTGG-AGCA-GATCG-AA-GACGGTGAGCC
1 TTATCCCCCTAAGCAGTAG-GGAAACAGGCTGGAAATTAC--AGA-TC
* *
71137482 TTATCCCCCTAAGCAGTAGAGAAACAGACTGGAAATTACAGATC
1 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
* * * * * * * * *
71137526 TTATCTCCCTAAACAGGAGTGG-AGCA-GAT-CAAA-GACGGTGAGCC
1 TTATCCCCCTAAGCAGTAG-GGAAACAGGCTGGAAATTAC--AGA-TC
* * * *
71137570 TTATCCCTCTAAGCAGTAGGAAAATAGGTTGGAAATTACAGATC
1 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
* * ** * * **** *
71137614 TTATCTCCCTAAGTAGTAGTGG-AGTA-GATCGAAGA-GGGTGACCC
1 TTATCCCCCTAAGCAGTAG-GGAAACAGGCTGGAA-ATTACAGA-TC
* * * *
71137658 TTATCCCCCTAAGCATTAGGAAAATAGGCTGGAAATTATAGATC
1 TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
*
71137702 TTATCTCCCTAAGCAGTAG
1 TTATCCCCCTAAGCAGTAG
71137721 TGGAGTAGAT
Statistics
Matches: 570, Mismatches: 165, Indels: 148
0.65 0.19 0.17
Matches are distributed among these distances:
41 23 0.04
42 24 0.04
43 86 0.15
44 345 0.61
45 53 0.09
46 24 0.04
47 15 0.03
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (44 bp):
TTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATC
Found at i:71136966 original size:88 final size:88
Alignment explanation
Indices: 71136812--71137842 Score: 1318
Period size: 88 Copynumber: 11.8 Consensus size: 88
71136802 AACATCGGTG
* ** * *
71136812 AATTCACAGATCTTATTTCTTTAAGCAGTAGTGGGGCAGATCGAAGACGGTGAGCTTTATCCCCC
1 AATT-ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCC
* *
71136877 TAAGTAGTAGGGAAACAGGCTAGA
65 TAAGCAGTAGGGAAACAGGCTGGA
* * *
71136901 AATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCGAAGACGATGAGTCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
71136966 AAGCAGTAGGGAAACAGGCTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
* *
71136989 AATTACAGATCTTATCTCCCTAA-CTAGTAGTGGAGCAGATCGAATACGGTAAGCCTTATCCCCC
1 AATTACAGATCTTATCTCCCTAAGC-AGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCC
71137053 TAAGCAGTAGGGAAACAGGCTGGA
65 TAAGCAGTAGGGAAACAGGCTGGA
* * * *
71137077 AATTACAGATCTTATCTCCGTAAGCAGTAGTGGAACAGATCAAAGACAGTGAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
*
71137142 AAGCAGCAGGGAAACAGGCTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
* * *
71137165 AATTACAGATCTTATCTCCCTAACCAGTAGTGGAGTAGATCAAAGACGGTGAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* * **
71137230 AAACAATAGGGAAACAGGCTAAA
66 AAGCAGTAGGGAAACAGGCTGGA
* * *
71137253 AATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* *
71137318 AA-CAATAGGGAAACAGGCTGAA
66 AAGCAGTAGGGAAACAGGCTGGA
* * *
71137340 AATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTAT-CCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* * *
71137404 AAGCAGTAAGGAAATAGGCTGAA
66 AAGCAGTAGGGAAACAGGCTGGA
* *
71137427 AATTACAGATATTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* *
71137492 AAGCAGTAGAGAAACAGACTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
* * * *
71137515 AATTACAGATCTTATCTCCCTAAACAGGAGTGGAGCAGATCAAAGACGGTGAGCCTTATCCCTCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* * *
71137580 AAGCAGTAGGAAAATAGGTTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
* * * *
71137603 AATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGAGGGTGACCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* * *
71137668 AAGCATTAGGAAAATAGGCTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
* * ** **** * *
71137691 AATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTTAAG-CCACCATCC-TATCTCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
71137754 AAGCAGTAGTGG----A-G-TAGG-
66 AAGCAGTAG-GGAAACAGGCT-GGA
** * *
71137772 -A-T-CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCATATCTCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
71137834 AAGCAGTAG
66 AAGCAGTAG
71137843 TGGAGCAGAT
Statistics
Matches: 841, Mismatches: 93, Indels: 25
0.88 0.10 0.03
Matches are distributed among these distances:
78 36 0.04
79 4 0.00
80 19 0.02
81 1 0.00
82 3 0.00
83 1 0.00
86 23 0.03
87 154 0.18
88 595 0.71
89 5 0.01
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (88 bp):
AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
AAGCAGTAGGGAAACAGGCTGGA
Found at i:71137703 original size:438 final size:440
Alignment explanation
Indices: 71136812--71137730 Score: 1387
Period size: 438 Copynumber: 2.1 Consensus size: 440
71136802 AACATCGGTG
* ** * * * *
71136812 AATTCACAGATCTTATTTCTTTAAGCAGTAGTGGGGCAGATCGAAGACGGTGAGCTTTATCCCCC
1 AATT-ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTATCCCCC
* *
71136877 TAAGTAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATC
65 TAAGCAATAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATC
* * * * *
71136942 GAAGACGATGAGTCTTATCCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTC
130 GAAGACGATAAGCCTTATCCCCCTAAGCAGTAAGGAAACAGGCTGAAAATTACAGATATTATCTC
* * *
71137007 CCTAACTAGTAGTGGAGCAGATCGAATACGGTAAGCCTTATCCCCCTAAGCAGTAGGGAAACAGG
195 CCTAACTAGTAGTGGAGCAGATCGAAGACGGTAAGCCTTATCCCCCTAAGCAGTAGAGAAACAGA
* * *
71137072 CTGGAAATTACAGATCTTATCTCCGTAAGCAGTAGTGGAACAGATCAAAGACAGTGAGCCTTATC
260 CTGGAAATTACAGATCTTATCTCCCTAAACAGGAGTGGAACAGATCAAAGACAGTGAGCCTTATC
*
71137137 CCCCTAAGCAGCAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAACCAGTAGTGGAGTA
325 CCCCTAAGCAGCAGGAAAACAGGCTGGAAATTACAGATCTTATCTCCCTAACCAGTAGTGGAGTA
* *
71137202 GATCAAAGACGGTGAGCCTTATCCCCCTAAACAATAGGGAAACAGGCTAAA
390 GATCAAAGACGGTGACCCTTATCCCCCTAAACAATAGGAAAACAGGCTAAA
*
71137253 AATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTATCCCCCT
71137318 AA-CAATAGGGAAACAGGCT-GAAAATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATC
66 AAGCAATAGGGAAACAGGCTAG-AAATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATC
*
71137381 GAAGAC-AGTAAGCCTTAT-CCCCTAAGCAGTAAGGAAATAGGCTGAAAATTACAGATATTATCT
130 GAAGACGA-TAAGCCTTATCCCCCTAAGCAGTAAGGAAACAGGCTGAAAATTACAGATATTATCT
* *
71137444 CCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCTAAGCAGTAGAGAAACAG
194 CCCTAACTAGTAGTGGAGCAGATCGAAGACGGTAAGCCTTATCCCCCTAAGCAGTAGAGAAACAG
* *
71137509 ACTGGAAATTACAGATCTTATCTCCCTAAACAGGAGTGGAGCAGATCAAAGACGGTGAGCCTTAT
259 ACTGGAAATTACAGATCTTATCTCCCTAAACAGGAGTGGAACAGATCAAAGACAGTGAGCCTTAT
* * * * **
71137574 CCCTCTAAGCAGTAGGAAAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGT
324 CCCCCTAAGCAGCAGGAAAACAGGCTGGAAATTACAGATCTTATCTCCCTAACCAGTAGTGGAGT
* * * * * **
71137639 AGATCGAAGAGGGTGACCCTTATCCCCCTAAGCATTAGGAAAATAGGCTGGA
389 AGATCAAAGACGGTGACCCTTATCCCCCTAAACAATAGGAAAACAGGCTAAA
* *
71137691 AATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGAT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
71137731 TTAAGCCACC
Statistics
Matches: 431, Mismatches: 45, Indels: 7
0.89 0.09 0.01
Matches are distributed among these distances:
438 301 0.70
439 71 0.16
440 55 0.13
441 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (440 bp):
AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAGCCTTATCCCCCT
AAGCAATAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCG
AAGACGATAAGCCTTATCCCCCTAAGCAGTAAGGAAACAGGCTGAAAATTACAGATATTATCTCC
CTAACTAGTAGTGGAGCAGATCGAAGACGGTAAGCCTTATCCCCCTAAGCAGTAGAGAAACAGAC
TGGAAATTACAGATCTTATCTCCCTAAACAGGAGTGGAACAGATCAAAGACAGTGAGCCTTATCC
CCCTAAGCAGCAGGAAAACAGGCTGGAAATTACAGATCTTATCTCCCTAACCAGTAGTGGAGTAG
ATCAAAGACGGTGACCCTTATCCCCCTAAACAATAGGAAAACAGGCTAAA
Found at i:71137785 original size:36 final size:37
Alignment explanation
Indices: 71137692--71138024 Score: 148
Period size: 44 Copynumber: 8.1 Consensus size: 37
71137682 TAGGCTGGAA
*
71137692 ATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGTAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAG
* *
71137729 ATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGG
1 A-TT-A--CA-GATCTTATCTCCCTAAGCAGTAGTGGAGTA-G
*
71137772 A-T-CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAG
* * * *
71137807 ATCGAAGACGGTGAATCATATCTCCCTAAGCAGTAGTGGAGCAG
1 AT----TAC--AG-ATCTTATCTCCCTAAGCAGTAGTGGAGTAG
* * *
71137851 ATTTAGGCCATCATCCTATCTCCCTAAGTAGTAGTGGAGTAG
1 A-TTA---CA-GATCTTATCTCCCTAAGCAGTAGTGGAGTAG
* * *
71137893 ATCGAAGACGACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAG
1 AT-------TACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAG
* * * *
71137937 ATTTAAGCCACCATCCTATCTCCCTAAACAATAGTGGAGTAGGCTAAAG
1 A-TT-A--CA-GATCTTATCTCCCTAAGCAGTAGT-G-G-A-G-T--AG
*
71137986 ATTACAGATCTTATCTCCCTAAGTAGTAGTGGAGTAG
1 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAG
71138023 AT
1 AT
71138025 CGAAGACAGC
Statistics
Matches: 226, Mismatches: 31, Indels: 78
0.67 0.09 0.23
Matches are distributed among these distances:
35 2 0.01
36 27 0.12
37 7 0.03
38 2 0.01
39 3 0.01
40 1 0.00
41 8 0.04
42 77 0.34
43 5 0.02
44 79 0.35
45 7 0.03
46 1 0.00
47 1 0.00
48 3 0.01
49 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (37 bp):
ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAG
Found at i:71137831 original size:44 final size:43
Alignment explanation
Indices: 71137781--71138108 Score: 209
Period size: 44 Copynumber: 7.6 Consensus size: 43
71137771 GATCAGATCT
*
71137781 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCA
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAT-AATCA
** * * * *
71137825 TATCTCCCTAAGCAGTAGTGGAGCAGAT-TTAGGCCATCATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGATAATCA
* * * *
71137867 TATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGACGACAAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGA-TAATCA
** * ** *
71137911 TATCTCCCTAAGCAGTAGTGGAGCAGATTTAAG-CCACCATCC
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGATAATCA
* * * * * ** * *
71137953 TATCTCCCTAAACAATAGTGGAGTAG-GCTAAAGATTACAGATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGACGATA-ATCA
* * ** *
71137997 TATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGACAGCGAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC-GATAATCA
* * * ** *
71138041 TATTTCCCTAAGCAGTACTTGAGCAGATTTAAGCCACCAT--TC-
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG--ACGATAATCA
*
71138083 TATCTCCCTACGCAGTAGTGGAGCAG
1 TATCTCCCTAAGCAGTAGTGGAGCAG
71138109 GTTAAAACCA
Statistics
Matches: 218, Mismatches: 57, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
42 80 0.37
43 14 0.06
44 120 0.55
45 2 0.01
46 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (43 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGATAATCA
Found at i:71137840 original size:122 final size:124
Alignment explanation
Indices: 71137703--71137938 Score: 352
Period size: 122 Copynumber: 1.9 Consensus size: 124
71137693 TTATAGATCT
*
71137703 TATCTCCCTAAGCAGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAG
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAG
71137768 TAGGATC-A-G-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCA
66 TA-GATCAACGAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCA
* * *
71137825 TATCTCCCTAAGCAGTAGTGGAGCAGATTTAGGCCATCATCCTATCTCCCTAAGTAGTAGTGGAG
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAG
71137890 TAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
66 TAGATC--A-ACG---AATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
71137939 TTAAGCCACC
Statistics
Matches: 101, Mismatches: 4, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
121 4 0.04
122 63 0.62
125 1 0.01
126 1 0.01
130 32 0.32
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (124 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAG
TAGATCAACGAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCA
Found at i:71137895 original size:86 final size:86
Alignment explanation
Indices: 71137703--71138108 Score: 323
Period size: 86 Copynumber: 4.8 Consensus size: 86
71137693 TTATAGATCT
** * * *
71137703 TATCTCCCTAAGCAGTAGTGGAGTAGATTTAAG-CCAC-CATCCTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACAAATCATATCTCCCTAAGCAGTAGTGG
* * *
71137766 AGTAGGA--T----CA-GATCT
66 AGCA-GATTTAAGCCACCATCC
* ***
71137781 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCATATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACAAATCATATCTCCCTAAGCAGTAGTGG
* *
71137846 AGCAGATTTAGGCCATCATCC
66 AGCAGATTTAAGCCACCATCC
* *
71137867 TATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACAAATCATATCTCCCTAAGCAGTAGTGG
71137932 AGCAGATTTAAGCCACCATCC
66 AGCAGATTTAAGCCACCATCC
* * * * ** * * *
71137953 TATCTCCCTAAACAATAGTGGAGTAG-GCTAAAGATTACAGATCTTATCTCCCTAAGTAGTAGTG
1 TATCTCCCTAAGCAGTAGTGGAGTAGATC-GAAGACGACAAATCATATCTCCCTAAGCAGTAGTG
* ** * * *
71138017 GAGTAGATCGAAGACAGCGAATCT
65 GAGCAGATTTAAGCCA-C-CATCC
* * * * ** * * * *
71138041 TATTTCCCTAAGCAGTACTTGAGCAGATTTAAG-CCACCATTC-TATCTCCCTACGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACAAATCATATCTCCCTAAGCAGTAGTGG
71138104 AGCAG
66 AGCAG
71138109 GTTAAAACCA
Statistics
Matches: 264, Mismatches: 51, Indels: 18
0.79 0.15 0.05
Matches are distributed among these distances:
78 30 0.11
79 3 0.01
80 27 0.10
81 1 0.00
85 3 0.01
86 169 0.64
87 5 0.02
88 26 0.10
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (86 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACAAATCATATCTCCCTAAGCAGTAGTGG
AGCAGATTTAAGCCACCATCC
Found at i:71138102 original size:130 final size:130
Alignment explanation
Indices: 71137867--71138114 Score: 390
Period size: 130 Copynumber: 1.9 Consensus size: 130
71137857 GCCATCATCC
*
71137867 TATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTACTGG
*
71137932 AGCAGATTTAAGCCACCATCCTATCTCCCTAAACAATAGTGGAGTAGGCTAAAGATTACAGATCT
66 AGCAGATTTAAGCCACCATCCTATCTCCCTAAACAATAGTGGAGCAGGCTAAAGATTACAGATCT
* * *
71137997 TATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGAC-AGCGAATCTTATTTCCCTAAGCAGTACTT
1 TATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGACGA-CAAATCTTATCTCCCTAAGCAGTACTG
* ** * *
71138061 GAGCAGATTTAAGCCACCATTCTATCTCCCTACGCAGTAGTGGAGCAGGTTAAA
65 GAGCAGATTTAAGCCACCATCCTATCTCCCTAAACAATAGTGGAGCAGGCTAAA
71138115 ACCACAATTC
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
129 1 0.01
130 106 0.99
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (130 bp):
TATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTACTGG
AGCAGATTTAAGCCACCATCCTATCTCCCTAAACAATAGTGGAGCAGGCTAAAGATTACAGATCT
Found at i:71138150 original size:130 final size:130
Alignment explanation
Indices: 71137867--71138180 Score: 379
Period size: 130 Copynumber: 2.4 Consensus size: 130
71137857 GCCATCATCC
* *
71137867 TATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGTAGTAGCGGAGTAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTACTGG
* ** *
71137932 AGCAGATTTAAGCCACCATCCTATCTCCCTAAACAATAGTGGAGTAGGCTAAAGATTACAGATCT
66 AGCAGATTTAAGCCACCATCCTATCTCCCTAAACAATAGTGGAGCAGGCTAAAGACCACAGATCA
* * * *
71137997 TATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGAC-AGCGAATCTTATTTCCCTAAGCAGTACTT
1 TATCTCCCTAAGTAGTAGCGGAGTAGATCGAAGACGA-CAAATCTTATCTCCCTAAGCAGTACTG
* ** * *
71138061 GAGCAGATTTAAGCCACCATTCTATCTCCCTACGCAGTAGTGGAGCAGGTTAAA-ACCACA-ATT
65 GAGCAGATTTAAGCCACCATCCTATCTCCCTAAACAATAGTGGAGCAGGCTAAAGACCACAGA-T
71138124 CA
129 CA
* * *
71138126 TATCTCCTTGAAGT-TTCAGCGGAGTAGATCGAAG-CTACAAATCTCT-TCTCCCTAA
1 TATCTCCCT-AAGTAGT-AGCGGAGTAGATCGAAGACGACAAATCT-TATCTCCCTAA
71138181 AATGGCATTG
Statistics
Matches: 160, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
128 1 0.01
129 31 0.19
130 128 0.80
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (130 bp):
TATCTCCCTAAGTAGTAGCGGAGTAGATCGAAGACGACAAATCTTATCTCCCTAAGCAGTACTGG
AGCAGATTTAAGCCACCATCCTATCTCCCTAAACAATAGTGGAGCAGGCTAAAGACCACAGATCA
Found at i:71138246 original size:44 final size:43
Alignment explanation
Indices: 71138198--71138424 Score: 133
Period size: 44 Copynumber: 5.2 Consensus size: 43
71138188 TTGGAACGGC
71138198 TCGAAGCCATAATTCGTATCTCCTTGAAGTTCCAGCAGAGTAGA
1 TCGAAGCCA-AATTCGTATCTCCTTGAAGTTCCAGCAGAGTAGA
* * ** ** **
71138242 TCGAAGCTACAAATCTC-T-TCTCCCTGAAATGGCATTAG-GGCGA
1 TCGAAGC--CAAAT-TCGTATCTCCTTGAAGTTCCAGCAGAGTAGA
* * *
71138285 CTCGAAGCTACAATTCGTATCTCCTTAAAGTTCCAGCGGAGTAGA
1 -TCGAAGCCA-AATTCGTATCTCCTTGAAGTTCCAGCAGAGTAGA
* * * * *** *
71138330 TTGAAGCTACAAATCTC-T-TCTCCCTGAAATTGCATTGGAG-CGA
1 TCGAAGC--CAAAT-TCGTATCTCCTTGAAGTTCCAGCAGAGTAGA
*
71138373 CTCAAAGCCACAATTCGTATCTCCTTGAAGTTCCAGCAGAGTAGA
1 -TCGAAGCCA-AATTCGTATCTCCTTGAAGTTCCAGCAGAGTAGA
71138418 TCGAAGC
1 TCGAAGC
71138425 TACAAATCTC
Statistics
Matches: 129, Mismatches: 38, Indels: 32
0.65 0.19 0.16
Matches are distributed among these distances:
42 7 0.05
43 13 0.10
44 89 0.69
45 13 0.10
46 7 0.05
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
TCGAAGCCAAATTCGTATCTCCTTGAAGTTCCAGCAGAGTAGA
Found at i:71138546 original size:88 final size:88
Alignment explanation
Indices: 71138116--71138535 Score: 617
Period size: 88 Copynumber: 4.8 Consensus size: 88
71138106 CAGGTTAAAA
* * *
71138116 CCACAATTCATATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
* *
71138181 AATGGCATTGGAACGGCTCGAAG
66 AATGGCATTGGAACGACTCAAAG
* *
71138204 CCATAATTCGTATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
* *
71138269 AATGGCATTAGG-GCGACTCGAAG
66 AATGGCATT-GGAACGACTCAAAG
* * *
71138292 CTACAATTCGTATCTCCTTAAAGTTCCAGCGGAGTAGATTGAAGCTACAAATCTCTTCTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
* *
71138357 AATTGCATTGGAGCGACTCAAAG
66 AATGGCATTGGAACGACTCAAAG
*
71138380 CCACAATTCGTATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
* *
71138445 AATGGCATTGGAACGGCTCAAAA
66 AATGGCATTGGAACGACTCAAAG
* ** * * *
71138468 CCATAATTTTTATCTACTTGAAGTTCTAGCGGAGTAGATCGAAGCTAAAAATCTCTTCTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
71138533 AAT
66 AAT
71138536 TACAATGGAA
Statistics
Matches: 301, Mismatches: 29, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
87 2 0.01
88 297 0.99
89 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (88 bp):
CCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
AATGGCATTGGAACGACTCAAAG
Found at i:71138669 original size:44 final size:44
Alignment explanation
Indices: 71138569--71138954 Score: 171
Period size: 44 Copynumber: 8.7 Consensus size: 44
71138559 TAAATTATAG
* * * * * *
71138569 ATCTTATCTCTCTGAAGTTACAGTAGAGCAGA-TTAA-A-ACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATACGA
* * * * *
71138610 ACCTTATCTACCTGAAGTTGTAGTGGAGCAAATTGAAGTTACGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATACGA
* * *
71138654 GTTTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATACGA
* * * * * * * *
71138698 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTA-TA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATACGA
* ** **
71138741 TATCCTATACGT--CTGAAGTTGCAGTAGGTCAGATCAAACCT-ACCATGGTGA
1 -ATCTTAT-C-TCCCTGAAGTTGCAGT-GG--AG--CAAA-CTGAAGAT-ACGA
* * * * * ** *
71138792 ATCTCATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATACGA
* * ** *
71138836 ACCTTATC-CCTCTGAAGTTGCAGTGGGGCAAGTTGAAGTTAC-A
1 ATCTTATCTCC-CTGAAGTTGCAGTGGAGCAAACTGAAGATACGA
* * *
71138879 AGTCTTGTCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATA-GAA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATACG-A
* *
71138924 GATCTTATCTCCTTGAAGTTGCAATGGAGCA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCA
71138955 GATCAAGCTG
Statistics
Matches: 250, Mismatches: 72, Indels: 42
0.69 0.20 0.12
Matches are distributed among these distances:
41 25 0.10
42 3 0.01
43 5 0.02
44 150 0.60
45 33 0.13
46 2 0.01
47 4 0.02
48 1 0.00
49 8 0.03
50 18 0.07
51 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATACGA
Found at i:71140859 original size:3 final size:3
Alignment explanation
Indices: 71140851--71140893 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
71140841 AAATCAAGAG
71140851 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
71140894 TTACTTGTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:71141120 original size:13 final size:13
Alignment explanation
Indices: 71141104--71141128 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71141094 TTTTCTTTAA
71141104 TATTTATTTATTG
1 TATTTATTTATTG
71141117 TATTTATTTATT
1 TATTTATTTATT
71141129 TATCCCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TATTTATTTATTG
Found at i:71147234 original size:53 final size:54
Alignment explanation
Indices: 71147061--71147267 Score: 220
Period size: 53 Copynumber: 3.8 Consensus size: 54
71147051 ATTAGGGTTT
* * * *
71147061 AAGGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCTATAAGGC
* * ** * * * * *
71147115 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGT-AAGTTCTATAAGGC
* * * *
71147170 AAAGATCCCATGTAAGACCATGCCAAGGCATGACAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCTATAAGGC
*
71147223 AAGGATACCATGTAAGACCATGTCAAGACATGGA-AATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GACAATGGTAAGTT
71147268 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 44 0.36
54 37 0.30
55 41 0.34
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCTATAAGGC
Found at i:71148652 original size:33 final size:35
Alignment explanation
Indices: 71148604--71148678 Score: 100
Period size: 33 Copynumber: 2.2 Consensus size: 35
71148594 AAAACTACAT
* * *
71148604 GACTGATACTGATACTGAGATGGGCTAAGG-CCAA
1 GACTGTTACTGATACTGAAAAGGGCTAAGGCCCAA
*
71148638 -ACTGTTACTGATACTGAAAAGGGCTTAGGCCCAA
1 GACTGTTACTGATACTGAAAAGGGCTAAGGCCCAA
71148672 GACTGTT
1 GACTGTT
71148679 TGACTGTGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 25 0.71
34 4 0.11
35 6 0.17
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (35 bp):
GACTGTTACTGATACTGAAAAGGGCTAAGGCCCAA
Found at i:71149884 original size:40 final size:40
Alignment explanation
Indices: 71149821--71150085 Score: 347
Period size: 40 Copynumber: 6.7 Consensus size: 40
71149811 TGAGCCTACA
* *
71149821 GGTCTTT-AACCCGGATTCCATTCCAGCACGA-AGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCA-TATAGCCTGCG
* *
71149860 GGTCTTTAAACCCGAATACAATTCCAGCATATAGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCATATAGCCTGCG
* * * * *
71149900 GGTCTTTAAACTCGGATTCCATTCCAGAACAAAGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCATATAGCCTGCG
* *
71149940 GGTCTTTAAACTCGGATACAATTCCAGCATATAGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCATATAGCCTGCG
* * *
71149980 GGTCTTTAAACTCGGATACCATTCTAGCACCA-AGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCA-TATAGCCTGCG
*
71150020 GGTCTTTAAACCCGGATACAATTCCAGCATATAGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCATATAGCCTGCG
*
71150060 GGTGTTTAAACCCGGATACCATTCCA
1 GGTCTTTAAACCCGGATACCATTCCA
71150086 ATACTCATAT
Statistics
Matches: 197, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
39 9 0.05
40 187 0.95
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
GGTCTTTAAACCCGGATACCATTCCAGCATATAGCCTGCG
Found at i:71149935 original size:80 final size:80
Alignment explanation
Indices: 71149821--71150085 Score: 424
Period size: 80 Copynumber: 3.3 Consensus size: 80
71149811 TGAGCCTACA
* * *
71149821 GGTCTTT-AACCCGGATTCCATTCCAGCACGAAGCCTGCGGGTCTTTAAACCCGAATACAATTCC
1 GGTCTTTAAACCCGGATACCATTCCAGCACAAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
71149885 AGCATATAGCCTGCG
66 AGCATATAGCCTGCG
* * * *
71149900 GGTCTTTAAACTCGGATTCCATTCCAGAACAAAGCCTGCGGGTCTTTAAACTCGGATACAATTCC
1 GGTCTTTAAACCCGGATACCATTCCAGCACAAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
71149965 AGCATATAGCCTGCG
66 AGCATATAGCCTGCG
* * *
71149980 GGTCTTTAAACTCGGATACCATTCTAGCACCAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
1 GGTCTTTAAACCCGGATACCATTCCAGCACAAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
71150045 AGCATATAGCCTGCG
66 AGCATATAGCCTGCG
*
71150060 GGTGTTTAAACCCGGATACCATTCCA
1 GGTCTTTAAACCCGGATACCATTCCA
71150086 ATACTCATAT
Statistics
Matches: 172, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 7 0.04
80 165 0.96
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
GGTCTTTAAACCCGGATACCATTCCAGCACAAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
AGCATATAGCCTGCG
Found at i:71152770 original size:20 final size:20
Alignment explanation
Indices: 71152745--71152787 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
71152735 TTTTTCTCAT
71152745 GCGGCTTCAATTGCCTCGAC
1 GCGGCTTCAATTGCCTCGAC
71152765 GCGGCTTCAATTGCCTCGAC
1 GCGGCTTCAATTGCCTCGAC
71152785 GCG
1 GCG
71152788 TAAGCTACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.14, C:0.35, G:0.28, T:0.23
Consensus pattern (20 bp):
GCGGCTTCAATTGCCTCGAC
Found at i:71156731 original size:80 final size:80
Alignment explanation
Indices: 71156599--71156872 Score: 390
Period size: 80 Copynumber: 3.4 Consensus size: 80
71156589 TTCTAACACG
* * * * *
71156599 AGCCTACGGGTCTTT-AACCTGGATTCCATTCTAGCACGAAGCCTGCGGGTCTTTAAACCTGGAT
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAACACGAAGCCTGCGGGTCTTTAAACCTGGAT
*
71156663 ACAATTCTAGCATAT
66 ACAATTCCAGCATAT
* * * * *
71156678 AGCCTGCGGGTCTTTAAACCTGGATTCCATTCCAACACGAAGCCTGCGGGTCTTTAAACCAGAAC
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAACACGAAGCCTGCGGGTCTTTAAACCTGGAT
71156743 ACAATTCCAGCATAT
66 ACAATTCCAGCATAT
* * * *
71156758 AGCCTGCGAGTCTTTAAACCCGGATACCATTCTAGCATGAAGCCTGCGGGTCTTTAAA-CTCGGA
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAACACGAAGCCTGCGGGTCTTTAAACCT-GGA
71156822 TACAATTCCAGCATAT
65 TACAATTCCAGCATAT
71156838 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAA
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAA
71156873 TACTCATATT
Statistics
Matches: 174, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
79 15 0.09
80 159 0.91
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAACACGAAGCCTGCGGGTCTTTAAACCTGGAT
ACAATTCCAGCATAT
Found at i:71156870 original size:40 final size:39
Alignment explanation
Indices: 71156599--71156871 Score: 305
Period size: 40 Copynumber: 6.9 Consensus size: 39
71156589 TTCTAACACG
* * * * *
71156599 AGCCTACGGGTCTTT-AACCTGGATTCCATTCTAGCACGA
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCA-TA
* * *
71156638 AGCCTGCGGGTCTTTAAACCTGGATACAATTCTAGCATA
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCATA
* * * *
71156677 TAGCCTGCGGGTCTTTAAACCTGGATTCCATTCCAACACGA
1 -AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCA-TA
* * * *
71156718 AGCCTGCGGGTCTTTAAACCAGAACACAATTCCAGCATA
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCATA
* *
71156757 TAGCCTGCGAGTCTTTAAACCCGGATACCATTCTAGCATGA
1 -AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCAT-A
* *
71156798 AGCCTGCGGGTCTTTAAACTCGGATACAATTCCAGCATA
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCATA
71156837 TAGCCTGCGGGTCTTTAAACCCGGATACCATTCCA
1 -AGCCTGCGGGTCTTTAAACCCGGATACCATTCCA
71156872 ATACTCATAT
Statistics
Matches: 200, Mismatches: 28, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
39 17 0.09
40 181 0.90
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAGCATA
Found at i:71156870 original size:120 final size:120
Alignment explanation
Indices: 71156593--71156871 Score: 336
Period size: 120 Copynumber: 2.3 Consensus size: 120
71156583 ACACATTTCT
* * * * *
71156593 AACACG-AGCCTACGGGTCTTT-AACCTGGATTCCATTCTAGCACGAAGCCTGCGGGTCTTTAAA
1 AACACGAAGCCTGCGGGTCTTTAAACCAGGATACCATTCCAGCACGAAGCCTGCGAGTCTTTAAA
* * *
71156656 CCTGGATACAATTCTAGCATATAGCCTGCGGGTCTTTAAACCTGGATTCCATTCC
66 CCCGGATACAATTCTAGCATATAGCCTGCGGGTCTTTAAACCTGGATACAATTCC
* * * *
71156711 AACACGAAGCCTGCGGGTCTTTAAACCAGAACACAATTCCAGCA-TATAGCCTGCGAGTCTTTAA
1 AACACGAAGCCTGCGGGTCTTTAAACCAGGATACCATTCCAGCACGA-AGCCTGCGAGTCTTTAA
*
71156775 ACCCGGATACCATTCTAGCATGA-AGCCTGCGGGTCTTTAAA-CTCGGATACAATTCC
65 ACCCGGATACAATTCTAGCAT-ATAGCCTGCGGGTCTTTAAACCT-GGATACAATTCC
* * *
71156831 AGCA-TATAGCCTGCGGGTCTTTAAACCCGGATACCATTCCA
1 AACACGA-AGCCTGCGGGTCTTTAAACCAGGATACCATTCCA
71156872 ATACTCATAT
Statistics
Matches: 136, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
118 6 0.04
119 18 0.13
120 111 0.82
121 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (120 bp):
AACACGAAGCCTGCGGGTCTTTAAACCAGGATACCATTCCAGCACGAAGCCTGCGAGTCTTTAAA
CCCGGATACAATTCTAGCATATAGCCTGCGGGTCTTTAAACCTGGATACAATTCC
Found at i:71181653 original size:26 final size:26
Alignment explanation
Indices: 71181617--71181674 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
71181607 GAAGCTCTAG
71181617 AGAGCCATTAATCAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * *
71181643 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
71181669 AGAGCC
1 AGAGCC
71181675 GTATATCGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:71181682 original size:26 final size:26
Alignment explanation
Indices: 71181617--71181685 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
71181607 GAAGCTCTAG
*
71181617 AGAGCC-ATTAATCAGGAAGCTCACAA
1 AGAGCCTA-TAATCGGGAAGCTCACAA
* *
71181643 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCTATAATCGGGAAGCTCACAA
71181669 AGAGCCGTAT-ATCGGGA
1 AGAGCC-TATAATCGGGA
71181686 CGTTCATAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 35 0.95
27 2 0.05
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (26 bp):
AGAGCCTATAATCGGGAAGCTCACAA
Found at i:71185121 original size:37 final size:37
Alignment explanation
Indices: 71185061--71185152 Score: 123
Period size: 37 Copynumber: 2.5 Consensus size: 37
71185051 CTTATTACGA
*
71185061 AGTCTTACCCGGACATAATCTCCACACATAGTCATCG
1 AGTCGTACCCGGACATAATCTCCACACATAGTCATCG
* *
71185098 AGTCGTACCTGGACATAATCTCCACACGTAGTCATCG
1 AGTCGTACCCGGACATAATCTCCACACATAGTCATCG
*
71185135 GGTC-TCACCCGGAACATA
1 AGTCGT-ACCCGG-ACATA
71185153 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (37 bp):
AGTCGTACCCGGACATAATCTCCACACATAGTCATCG
Found at i:71185269 original size:49 final size:49
Alignment explanation
Indices: 71185201--71185468 Score: 353
Period size: 49 Copynumber: 5.7 Consensus size: 49
71185191 ATTCACATTA
* * * * * *
71185201 GCCATTCGGCTTTACCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
*
71185250 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
* * *
71185299 ACCATTAGGCCTCATCACATATACATATACTTTCACATTCGCCACATCG
1 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
*
71185348 GCCATTAGG-----T--C---T--GTATACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
71185385 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
71185434 GCCATTAGGCCTTATCACATATACATATACTTTCA
1 GCCATTAGGCCTTATCACATATACATATACTTTCA
71185469 TGAATCTTGA
Statistics
Matches: 194, Mismatches: 13, Indels: 24
0.84 0.06 0.10
Matches are distributed among these distances:
37 32 0.16
39 1 0.01
42 2 0.01
44 2 0.01
47 1 0.01
49 156 0.80
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
Found at i:71185384 original size:86 final size:86
Alignment explanation
Indices: 71185278--71185442 Score: 303
Period size: 86 Copynumber: 1.9 Consensus size: 86
71185268 ATATACATAC
*
71185278 ACTTTCACATTCACCACATCGACCATTAGGCCTCATCACATATACATATACTTTCACATTCGCCA
1 ACTTTCACATTCACCACATCGACCATTAGGCCTCATCACATATACATATACTTTCACATTCACCA
71185343 CATCGGCCATTAGGTCTGTAT
66 CATCGGCCATTAGGTCTGTAT
* *
71185364 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCA
1 ACTTTCACATTCACCACATCGACCATTAGGCCTCATCACATATACATATACTTTCACATTCACCA
71185429 CATCGGCCATTAGG
66 CATCGGCCATTAGG
71185443 CCTTATCACA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 76 1.00
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.30
Consensus pattern (86 bp):
ACTTTCACATTCACCACATCGACCATTAGGCCTCATCACATATACATATACTTTCACATTCACCA
CATCGGCCATTAGGTCTGTAT
Found at i:71188154 original size:40 final size:40
Alignment explanation
Indices: 71188094--71188257 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
71188084 CGGGATTTAA
* ** *
71188094 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** * *
71188134 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGT
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
71188174 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
71188214 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
71188254 CCGG
1 CCGG
71188258 GTTTCATTCA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:71188241 original size:80 final size:80
Alignment explanation
Indices: 71188080--71188257 Score: 198
Period size: 80 Copynumber: 2.2 Consensus size: 80
71188070 GAATCATGTA
* * * * **
71188080 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
71188144 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* * ** *
71188159 CCTTCGGGTCTTAGTCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
71188223 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
71188239 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
71188258 GTTTCATTCA
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 11 0.14
80 68 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:71189096 original size:40 final size:40
Alignment explanation
Indices: 71189047--71189158 Score: 188
Period size: 40 Copynumber: 2.8 Consensus size: 40
71189037 CCAGCATGAT
* * *
71189047 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
71189087 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
71189127 TGCTCTTCGGAACTTAGTCCGAATACATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
71189159 CTCAATTCTC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:71190984 original size:37 final size:37
Alignment explanation
Indices: 71190929--71191001 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
71190919 TACGAAGTCT
71190929 TACCCGGACATAATCTCCACACATAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACATAGTCATCGGGTCG
* * *
71190966 TACCTGGACATAATCTCCATACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACATAGTCATCGGGTC
71191002 TCACCCGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACATAGTCATCGGGTCG
Found at i:71191132 original size:49 final size:49
Alignment explanation
Indices: 71191064--71191491 Score: 721
Period size: 49 Copynumber: 8.7 Consensus size: 49
71191054 ATTCACATTA
* * * * *
71191064 GCCATTCGGCTTTACCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
71191113 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
71191162 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
71191211 GCCATTAGGCCTGATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
71191260 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
71191309 GCCATTAGGCCTCATCACATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
71191358 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
71191407 GCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
71191456 GCCATTAGGCCTTATCACATATACATATACTTTCAC
1 GCCATTAGGCCTTATCACATATACATACACTTTCAC
71191492 GAATCTTGAT
Statistics
Matches: 360, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 360 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:71199417 original size:94 final size:94
Alignment explanation
Indices: 71199256--71199913 Score: 1136
Period size: 94 Copynumber: 7.0 Consensus size: 94
71199246 AATGTGATCG
* * * *
71199256 TATATGCTATTTGAATTAAGTAAGTTGTCATATTATAATGAGTTACCATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
71199321 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* * * * *
71199350 TATATGCTATTTGAATTAAATAAGTTGCCATATTATAACGAGTTAACATTGGCACTATGTCTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
71199415 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
71199444 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
71199509 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
71199538 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
71199603 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* * *
71199632 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTCTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
71199697 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
71199726 AATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATTAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
71199791 GAATTAAATGTCACTTTGTGTGCAAATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
71199820 TATATGCTATTTGAGTTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
71199885 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
71199914 GAATGTCGAC
Statistics
Matches: 535, Mismatches: 29, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 535 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.39
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:71199918 original size:24 final size:24
Alignment explanation
Indices: 71199869--71200001 Score: 76
Period size: 24 Copynumber: 5.5 Consensus size: 24
71199859 GAGTTAACAT
*
71199869 TGGCACTATGTGTGCGGAATTAAA
1 TGGCACTATGTGTGCAGAATTAAA
* *
71199893 TGGCACTATGTGTGCAGATTTGAA
1 TGGCACTATGTGTGCAGAATTAAA
* * * * *
71199917 TGTCGACGCATGAGTG-AAAATTACA
1 TGGC-AC-TATGTGTGCAGAATTAAA
** *
71199942 -GGCACTATGTGTGC-GGTTTAGTA
1 TGGCACTATGTGTGCAGAATTA-AA
* *
71199965 TGGCACTATGTGTGC-GAGCTTAAT
1 TGGCACTATGTGTGCAGA-ATTAAA
*
71199989 TAGCACTATGTGT
1 TGGCACTATGTGT
71200002 ACAAATTCGG
Statistics
Matches: 81, Mismatches: 22, Indels: 12
0.70 0.19 0.10
Matches are distributed among these distances:
22 9 0.11
23 3 0.04
24 53 0.65
25 10 0.12
26 6 0.07
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCAGAATTAAA
Found at i:71204140 original size:2 final size:2
Alignment explanation
Indices: 71204133--71204159 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
71204123 CCAAATGTTG
71204133 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
71204160 TGCGATAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:71214088 original size:10 final size:10
Alignment explanation
Indices: 71214073--71214099 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
71214063 CATTATCAGC
71214073 ACGAGTTTCT
1 ACGAGTTTCT
71214083 ACGAGTTTCT
1 ACGAGTTTCT
71214093 ACGAGTT
1 ACGAGTT
71214100 CATAGTGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (10 bp):
ACGAGTTTCT
Found at i:71219712 original size:30 final size:30
Alignment explanation
Indices: 71219676--71219738 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
71219666 TGTGAAAGTG
71219676 TGTATATATGTGATAAGGCCTAATGGCCGA
1 TGTATATATGTGATAAGGCCTAATGGCCGA
71219706 TGTATATATGTGATAAGGCCTAATGGCCGA
1 TGTATATATGTGATAAGGCCTAATGGCCGA
71219736 TGT
1 TGT
71219739 GATGAATGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.32
Consensus pattern (30 bp):
TGTATATATGTGATAAGGCCTAATGGCCGA
Found at i:71219720 original size:79 final size:79
Alignment explanation
Indices: 71219629--71219787 Score: 318
Period size: 79 Copynumber: 2.0 Consensus size: 79
71219619 GTATGAGGTA
71219629 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
71219694 CCTAATGGCCGATG
66 CCTAATGGCCGATG
71219708 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
71219773 CCTAATGGCCGATG
66 CCTAATGGCCGATG
71219787 T
1 T
71219788 GATGAATGTG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.30, C:0.10, G:0.29, T:0.31
Consensus pattern (79 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCTAATGGCCGATG
Found at i:71219876 original size:47 final size:49
Alignment explanation
Indices: 71219706--71219914 Score: 336
Period size: 49 Copynumber: 4.3 Consensus size: 49
71219696 TAATGGCCGA
71219706 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
71219755 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
71219804 TATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG-AAG-G
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
71219851 TGTATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAA--G
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
71219898 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
71219915 TCCCGAAGGG
Statistics
Matches: 150, Mismatches: 9, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 55 0.37
48 5 0.03
49 90 0.60
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (49 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:71219884 original size:96 final size:98
Alignment explanation
Indices: 71219708--71219914 Score: 350
Period size: 96 Copynumber: 2.2 Consensus size: 98
71219698 ATGGCCGATG
71219708 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
* *
71219773 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66 CCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
71219806 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTG-AAG-GTGTATATATGTGATAGGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
71219869 CCGAATGGCCAATGTGATGAATGTGAAAGTGTA
66 CCGAATGGCCAATGTGATGAATGTGAAAGTGTA
71219902 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
71219915 TCCCGAAGGG
Statistics
Matches: 105, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
94 10 0.10
95 1 0.01
96 51 0.49
97 3 0.03
98 40 0.38
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.30
Consensus pattern (98 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:71224260 original size:27 final size:28
Alignment explanation
Indices: 71224203--71224272 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
71224193 AAACTTGTAC
*
71224203 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
71224231 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
71224258 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
71224273 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:71224283 original size:27 final size:27
Alignment explanation
Indices: 71224203--71224284 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
71224193 AAACTTGTAC
* * *
71224203 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
71224231 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
71224258 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
71224285 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:71232194 original size:27 final size:28
Alignment explanation
Indices: 71232137--71232206 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
71232127 AAACTTGTAC
*
71232137 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
71232165 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
71232192 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
71232207 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:71232217 original size:27 final size:27
Alignment explanation
Indices: 71232137--71232218 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
71232127 AAACTTGTAC
* * *
71232137 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
71232165 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
71232192 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
71232219 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:71235768 original size:23 final size:22
Alignment explanation
Indices: 71235742--71235794 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
71235732 ACTTTCTCTC
*
71235742 TTTAGGGTTAAGGCTTTTATTTT
1 TTTAGGGTTAAGGCTTTTA-TTA
* * *
71235765 TTTAAGGTTAGGGTTTTTATTA
1 TTTAGGGTTAAGGCTTTTATTA
71235787 TTTAGGGT
1 TTTAGGGT
71235795 ATTTTGAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.19, C:0.02, G:0.25, T:0.55
Consensus pattern (22 bp):
TTTAGGGTTAAGGCTTTTATTA
Found at i:71237659 original size:30 final size:30
Alignment explanation
Indices: 71237625--71237687 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
71237615 ATTTAACAAG
*
71237625 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAACAACAAAATTAA
* *
71237655 CAAATGCCTTTAAAATAACAATAAAATTAA
1 CAAATGCCTCTAAAATAACAACAAAATTAA
71237685 CAA
1 CAA
71237688 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAACAACAAAATTAA
Found at i:71237679 original size:11 final size:11
Alignment explanation
Indices: 71237665--71237695 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
71237655 CAAATGCCTT
71237665 TAAAATAACAA
1 TAAAATAACAA
71237676 TAAAATTAACAA
1 TAAAA-TAACAA
71237688 TAAAATAA
1 TAAAATAA
71237696 GTTTTATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (11 bp):
TAAAATAACAA
Found at i:71239226 original size:2 final size:2
Alignment explanation
Indices: 71239219--71239249 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
71239209 TTCTTCTTCT
71239219 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
71239250 TATTTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:71251948 original size:46 final size:46
Alignment explanation
Indices: 71251898--71252073 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
71251888 TGGTTGAGCA
71251898 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71251944 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71251989 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71252037 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71252074 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71252054 original size:93 final size:93
Alignment explanation
Indices: 71251895--71252065 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
71251885 GGATGGTTGA
* *
71251895 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71251960 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71251988 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71252053 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71252066 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71258105 original size:39 final size:39
Alignment explanation
Indices: 71258024--71258186 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
71258014 TATGGTAACC
** *
71258024 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
71258064 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
71258103 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
71258142 CGCGCAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
71258181 CGCACA
1 CGCACA
71258187 TTCATTCACA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.86
40 16 0.14
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:71260685 original size:38 final size:38
Alignment explanation
Indices: 71260641--71260716 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
71260631 TTTGATTTCT
71260641 TTAAAGAAGATGATTGTGATTTGTTCATAAATCTTTTA
1 TTAAAGAAGATGATTGTGATTTGTTCATAAATCTTTTA
71260679 TTAAAGAAGATGATTGTGATTTGTTCATAAATCTTTTA
1 TTAAAGAAGATGATTGTGATTTGTTCATAAATCTTTTA
71260717 CCAGAAATTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.05, G:0.16, T:0.45
Consensus pattern (38 bp):
TTAAAGAAGATGATTGTGATTTGTTCATAAATCTTTTA
Found at i:71264838 original size:45 final size:46
Alignment explanation
Indices: 71264751--71264838 Score: 117
Period size: 45 Copynumber: 1.9 Consensus size: 46
71264741 TGAGCCATGT
*
71264751 ATCAAGAAGCTTATCGGGGCTAAACAGGAAACTCATAAGAGTTTTA
1 ATCAAGAAGCTTATCGGAGCTAAACAGGAAACTCATAAGAGTTTTA
* * *
71264797 ATCAAGAAGCTTAT-TGAGCTTAACAGGTAACTC-TAATGAGTT
1 ATCAAGAAGCTTATCGGAGCTAAACAGGAAACTCATAA-GAGTT
71264839 ATTATTAGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
44 3 0.08
45 20 0.54
46 14 0.38
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (46 bp):
ATCAAGAAGCTTATCGGAGCTAAACAGGAAACTCATAAGAGTTTTA
Found at i:71276940 original size:13 final size:13
Alignment explanation
Indices: 71276909--71276949 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 13
71276899 CTTCTCATTT
71276909 TTTTTCTTTG-TG
1 TTTTTCTTTGTTG
*
71276921 TTATTCTTTGTTG
1 TTTTTCTTTGTTG
71276934 TTTTTCTTT-TTG
1 TTTTTCTTTGTTG
71276946 TTTT
1 TTTT
71276950 ATTTCCCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.02, C:0.07, G:0.12, T:0.78
Consensus pattern (13 bp):
TTTTTCTTTGTTG
Found at i:71276979 original size:24 final size:24
Alignment explanation
Indices: 71276949--71277002 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
71276939 CTTTTTGTTT
*
71276949 TATTTCCCTCTGCTGTCGATTTTC
1 TATTTCCCTCTGCTGTCGATTTGC
*
71276973 TATTTCCCTTTGCTGTCGATTTGC
1 TATTTCCCTCTGCTGTCGATTTGC
71276997 TATTTC
1 TATTTC
71277003 TTGTCCCCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.09, C:0.26, G:0.13, T:0.52
Consensus pattern (24 bp):
TATTTCCCTCTGCTGTCGATTTGC
Found at i:71278931 original size:21 final size:22
Alignment explanation
Indices: 71278902--71278948 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
71278892 TAGATAGATA
71278902 ACCAGCCCAGT-CCAACCAACAC
1 ACCAGCCCA-TACCAACCAACAC
*
71278924 ACCA-CCCATACCAACCAGCAC
1 ACCAGCCCATACCAACCAACAC
71278945 ACCA
1 ACCA
71278949 TGTGGGGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 18 0.78
22 4 0.17
ACGTcount: A:0.38, C:0.51, G:0.06, T:0.04
Consensus pattern (22 bp):
ACCAGCCCATACCAACCAACAC
Found at i:71281858 original size:40 final size:40
Alignment explanation
Indices: 71281803--71281954 Score: 216
Period size: 40 Copynumber: 3.8 Consensus size: 40
71281793 TGGATGATAA
* *
71281803 CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
71281843 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * * *
71281883 CTGGGCTAAGTCCTGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
71281923 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
71281955 AATTATATCC
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 98 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:71284399 original size:22 final size:22
Alignment explanation
Indices: 71284373--71284417 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
71284363 ATTATGTGTA
71284373 TTAATTCATAATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
71284395 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
71284417 T
1 T
71284418 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:71295443 original size:50 final size:50
Alignment explanation
Indices: 71295363--71295696 Score: 334
Period size: 50 Copynumber: 6.6 Consensus size: 50
71295353 AAGGTTACGT
* * * * *
71295363 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTCGAGAAATAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGA
* *
71295413 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGA
* *
71295463 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATATGGCATCGGCCTTGAGATATGA
1 GAGCCAGTGTAAGACCATGTCTGGG--A---C--ATGGCATCGGCCTCGAGATATGA
* ** * *
71295520 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCGATAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGA
* * * ** * *
71295570 GAGCCAATGTAGGACCATGTCTGGGGCATGGCATCGG-CT-TTGATGTGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGA
** * *
71295618 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CT-TTGATGTGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGA
* *
71295666 GAGCTAGTGTAAGACCATGTCCGGGACATGG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGG
71295697 TGTCGGCACC
Statistics
Matches: 247, Mismatches: 30, Indels: 16
0.84 0.10 0.05
Matches are distributed among these distances:
48 77 0.31
49 1 0.00
50 118 0.48
52 2 0.01
55 2 0.01
57 47 0.19
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.24
Consensus pattern (50 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGA
Found at i:71295509 original size:57 final size:57
Alignment explanation
Indices: 71295440--71295553 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
71295430 TGTCTAGGAC
71295440 ATGGCATCGGCCTCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 ATGGCATCGGCCTCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
*
71295497 ATGGCATCGGCCTTGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 ATGGCATCGGCCTCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
71295554 CGGTATCGAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (57 bp):
ATGGCATCGGCCTCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
Found at i:71295547 original size:107 final size:104
Alignment explanation
Indices: 71295389--71295696 Score: 344
Period size: 107 Copynumber: 3.0 Consensus size: 104
71295379 ATGTTTGGAA
* * * * *
71295389 CATGGCATCGACCTCGAGAAATAAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTC
1 CATGGCATCGGCCTTGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTC
71295454 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
65 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
*
71295494 CATATGGCATCGGCCTTGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTA
1 C--ATGGCATCGGCCTTGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-C
* * * * *
71295559 TCGATAGATGAGAGCCAATGTAGGACCATGTCT-GG----GG
63 TCGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
* * * * *
71295596 CATGGCATCGG-CTT-TGATGTGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-T
1 CATGGCATCGGCCTTGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCG
* * * *
71295658 TGATGTGTGAGCTAGTGTAAGACCATGTCCGGGACATGG
66 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
71295697 TGTCGGCACC
Statistics
Matches: 169, Mismatches: 27, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
96 21 0.12
97 3 0.02
98 41 0.24
99 3 0.02
100 10 0.06
101 2 0.01
102 3 0.02
105 1 0.01
106 2 0.01
107 83 0.49
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.24
Consensus pattern (104 bp):
CATGGCATCGGCCTTGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCG
AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGG
Found at i:71295571 original size:57 final size:57
Alignment explanation
Indices: 71295454--71295607 Score: 180
Period size: 57 Copynumber: 2.8 Consensus size: 57
71295444 CATCGGCCTC
* * *
71295454 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATATGGCATCGGCCTT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATACGGCATCGGACAT
*
71295511 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT-CGGTATC-G--AT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATACGGCATCGGACAT
* * * *
71295564 -AG--ATGAGAGCCAATGTAGGACCATGTCTGGGGCATGGCAT-CGGC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATACGGC
71295608 TTTGATGTGT
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
50 37 0.42
52 2 0.02
53 1 0.01
55 1 0.01
56 5 0.06
57 43 0.48
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.23
Consensus pattern (57 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATACGGCATCGGACAT
Found at i:71295703 original size:48 final size:48
Alignment explanation
Indices: 71295497--71295696 Score: 249
Period size: 48 Copynumber: 4.1 Consensus size: 48
71295487 GACATGGCAT
* * * *
71295497 ATGGCATCGGCCTTGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGAC
1 ATGGCATCGG-CTT-TGATGTGTGAGCCAGTGTAAGACCATGTCTGGGAC
* * * * *
71295547 ATGGCATCGG-TATCGATAGATGAGAGCCAATGTAGGACCATGTCTGGGGC
1 ATGGCATCGGCT-TTGAT-G-TGTGAGCCAGTGTAAGACCATGTCTGGGAC
71295597 ATGGCATCGGCTTTGATGTGTGAGCCAGTGTAAGACCATGTCTGGGAC
1 ATGGCATCGGCTTTGATGTGTGAGCCAGTGTAAGACCATGTCTGGGAC
* *
71295645 ATGGCATCGGCTTTGATGTGTGAGCTAGTGTAAGACCATGTCCGGGAC
1 ATGGCATCGGCTTTGATGTGTGAGCCAGTGTAAGACCATGTCTGGGAC
71295693 ATGG
1 ATGG
71295697 TGTCGGCACC
Statistics
Matches: 133, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
48 80 0.60
49 2 0.02
50 50 0.38
51 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25
Consensus pattern (48 bp):
ATGGCATCGGCTTTGATGTGTGAGCCAGTGTAAGACCATGTCTGGGAC
Found at i:71296889 original size:25 final size:25
Alignment explanation
Indices: 71296860--71296912 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
71296850 ATTATTTTCA
71296860 TACGGTCTTACTAAGTTATAAAGCT
1 TACGGTCTTACTAAGTTATAAAGCT
71296885 TACGGTCTTACTAAGTTATAAAGCT
1 TACGGTCTTACTAAGTTATAAAGCT
71296910 TAC
1 TAC
71296913 TCCCTTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (25 bp):
TACGGTCTTACTAAGTTATAAAGCT
Found at i:71306060 original size:10 final size:11
Alignment explanation
Indices: 71306044--71306073 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
71306034 ATATTTTGAG
71306044 AAAAATAAAAT
1 AAAAATAAAAT
71306055 -AAAATAAAAT
1 AAAAATAAAAT
71306065 AAAAATAAA
1 AAAAATAAA
71306074 GAACACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:71310004 original size:29 final size:29
Alignment explanation
Indices: 71309972--71310044 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
71309962 CTTCGAGCTC
* *
71309972 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
71310001 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
71310030 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
71310045 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:71311266 original size:25 final size:26
Alignment explanation
Indices: 71311218--71311275 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
71311208 TTTTTTTCCT
71311218 TTTC-TTTGTTTTTCTTCATATTCTC
1 TTTCTTTTGTTTTTCTTCATATTCTC
* * *
71311243 TTTCTTTTTTTTTTTTTCAT-TTCTT
1 TTTCTTTTGTTTTTCTTCATATTCTC
71311268 TATTCTTT
1 T-TTCTTT
71311276 CTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 9 0.32
26 19 0.68
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.76
Consensus pattern (26 bp):
TTTCTTTTGTTTTTCTTCATATTCTC
Found at i:71317905 original size:29 final size:29
Alignment explanation
Indices: 71317873--71317945 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
71317863 CTTCGAGCTC
* *
71317873 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
71317902 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
71317931 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
71317946 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:71319155 original size:24 final size:24
Alignment explanation
Indices: 71319114--71319169 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
71319104 TTTTTTTCCT
71319114 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
71319139 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
71319162 TATTCTTT
1 T-TTCTTT
71319170 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:71321696 original size:35 final size:35
Alignment explanation
Indices: 71321652--71321818 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
71321642 TCCTCATTGA
** *
71321652 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
71321687 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
71321727 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
71321762 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
71321797 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
71321819 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:71321735 original size:75 final size:73
Alignment explanation
Indices: 71321647--71321818 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
71321637 GGTTTTCCTC
** * * **
71321647 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
71321711 TCAGTATGG
65 TCAGTATGG
*
71321720 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
71321785 CTCAGTATGG
64 CTCAGTATGG
71321795 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
71321819 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:71324173 original size:5 final size:5
Alignment explanation
Indices: 71324163--71324191 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
71324153 CAATTTGAGA
71324163 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
71324192 AACACACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:71325674 original size:91 final size:91
Alignment explanation
Indices: 71325519--71325704 Score: 300
Period size: 91 Copynumber: 2.0 Consensus size: 91
71325509 ACCTCTGTTC
* * *
71325519 ATGTTCGTTTGCTTATTTTTAAGCTTGTTCATGTTCAGTTTGTGTTCGTTAAGAATTTTAAATTT
1 ATGTTCGTTTGCTTATTTTTAAGCTTGTTCATGTTCAGTTTGTGTTCATTAAAAATTTCAAATTT
*
71325584 TTGTTCATTTTCGTTTATTTAAAATT
66 TTGTTCATGTTCGTTTATTTAAAATT
* *
71325610 ATGTTTGTTTGTTTATTTTTAAGCTTGTTCATGTTCAGTTTGTGTTCATTAAAAATTTCAAATTT
1 ATGTTCGTTTGCTTATTTTTAAGCTTGTTCATGTTCAGTTTGTGTTCATTAAAAATTTCAAATTT
* *
71325675 TTGTTTATGTTCGTTTATTTAAATTT
66 TTGTTCATGTTCGTTTATTTAAAATT
71325701 ATGT
1 ATGT
71325705 GTATTTATGT
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.22, C:0.08, G:0.14, T:0.57
Consensus pattern (91 bp):
ATGTTCGTTTGCTTATTTTTAAGCTTGTTCATGTTCAGTTTGTGTTCATTAAAAATTTCAAATTT
TTGTTCATGTTCGTTTATTTAAAATT
Found at i:71325764 original size:23 final size:23
Alignment explanation
Indices: 71325732--71325787 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
71325722 TTTAATATTC
* *
71325732 ACGAATATGTTCATTGAAC-TTAA
1 ACGAACATGTTCA-CGAACATTAA
*
71325755 TCGAACATGTTCACGAACATTAA
1 ACGAACATGTTCACGAACATTAA
71325778 ACGAACATGT
1 ACGAACATGT
71325788 ACATGAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 4 0.14
23 24 0.86
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (23 bp):
ACGAACATGTTCACGAACATTAA
Found at i:71325856 original size:4 final size:4
Alignment explanation
Indices: 71325849--71325878 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
71325839 CAAACAATAA
*
71325849 ATAC ATAC ATGC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
71325879 TATTTTATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.47, C:0.23, G:0.03, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:71325926 original size:9 final size:8
Alignment explanation
Indices: 71325909--71325936 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
71325899 AATATATACT
71325909 AATAAAAA
1 AATAAAAA
71325917 AATAAAAA
1 AATAAAAA
71325925 AATAAAAA
1 AATAAAAA
71325933 AATA
1 AATA
71325937 CTAATGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (8 bp):
AATAAAAA
Found at i:71326694 original size:16 final size:17
Alignment explanation
Indices: 71326673--71326707 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
71326663 TGATATTTGA
71326673 ATGATTAAAAT-TTTTT
1 ATGATTAAAATATTTTT
*
71326689 ATGATTAAATTATTTTT
1 ATGATTAAAATATTTTT
71326706 AT
1 AT
71326708 TAAATATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (17 bp):
ATGATTAAAATATTTTT
Found at i:71328414 original size:17 final size:19
Alignment explanation
Indices: 71328372--71328415 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
71328362 ATAAAATTTT
*
71328372 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
71328391 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
71328409 AA-TATTA
1 AATTATTA
71328416 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:71333562 original size:2 final size:2
Alignment explanation
Indices: 71333555--71333584 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
71333545 CTATTGAGAA
71333555 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71333585 GACAAATTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71334968 original size:12 final size:12
Alignment explanation
Indices: 71334939--71334979 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
71334929 ATTATTAATA
71334939 AATAAACGAGTC
1 AATAAACGAGTC
*
71334951 -ATAAACGAATC
1 AATAAACGAGTC
*
71334962 AATAAACGGGTC
1 AATAAACGAGTC
71334974 AATAAA
1 AATAAA
71334980 TGAACTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.17
Consensus pattern (12 bp):
AATAAACGAGTC
Found at i:71335641 original size:17 final size:16
Alignment explanation
Indices: 71335621--71335666 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
71335611 TATATATGTA
71335621 TAATAAATATATAAAAT
1 TAATAAATAT-TAAAAT
*
71335638 TAATAATTATTAAAAT
1 TAATAAATATTAAAAT
71335654 CT-ATAAA-ATTAAA
1 -TAATAAATATTAAA
71335667 CTTTTATGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 6 0.23
16 10 0.38
17 10 0.38
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATAAATATTAAAAT
Found at i:71335653 original size:16 final size:17
Alignment explanation
Indices: 71335621--71335653 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
71335611 TATATATGTA
71335621 TAATAAATATATAAAAT
1 TAATAAATATATAAAAT
*
71335638 TAATAATTAT-TAAAAT
1 TAATAAATATATAAAAT
71335654 CTATAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAATAAATATATAAAAT
Found at i:71351372 original size:9 final size:9
Alignment explanation
Indices: 71351360--71351385 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
71351350 ATATAATATG
71351360 TATAAATTC
1 TATAAATTC
71351369 TATAAATTC
1 TATAAATTC
71351378 TATAAATT
1 TATAAATT
71351386 TGCAAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (9 bp):
TATAAATTC
Found at i:71352037 original size:16 final size:16
Alignment explanation
Indices: 71352013--71352048 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
71352003 TTTGTTTTAA
* *
71352013 ATTTGAATTTTTATAT
1 ATTTCAATTTTTAAAT
71352029 ATTTCAATTTTTAAAT
1 ATTTCAATTTTTAAAT
71352045 ATTT
1 ATTT
71352049 GTTAACATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (16 bp):
ATTTCAATTTTTAAAT
Found at i:71365132 original size:15 final size:17
Alignment explanation
Indices: 71365108--71365150 Score: 72
Period size: 15 Copynumber: 2.6 Consensus size: 17
71365098 GAACAAGGTA
71365108 TAACATTTTACAAGTC-
1 TAACATTTTACAAGTCT
71365124 TAA-ATTTTACAAGTCT
1 TAACATTTTACAAGTCT
71365140 TAACATTTTAC
1 TAACATTTTAC
71365151 TTAATCCTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.48
16 6 0.24
17 7 0.28
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (17 bp):
TAACATTTTACAAGTCT
Found at i:71365877 original size:19 final size:19
Alignment explanation
Indices: 71365831--71365878 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
71365821 GTATATATTT
71365831 TAAA-TTTATTTAGGTAAA
1 TAAATTTTATTTAGGTAAA
* * *
71365849 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAAA
71365868 TAAATTTTATT
1 TAAATTTTATT
71365879 CATATTTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAAA
Found at i:71365981 original size:41 final size:44
Alignment explanation
Indices: 71365892--71365982 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 44
71365882 ATTTTAGAAA
71365892 TATTTT-TATTTTATATTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCTATTTTATATTTTAGTAGTTTACTAGAATAAGGGAAC
* *
71365935 TATTTTCT-TTTTATGTTTTAGTAGTTTA-T-TAATAAGGGAAC
1 TATTTTCTATTTTATATTTTAGTAGTTTACTAGAATAAGGGAAC
71365976 TATTTTC
1 TATTTTC
71365983 CCAATTAGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
41 18 0.40
42 1 0.02
43 25 0.56
44 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (44 bp):
TATTTTCTATTTTATATTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:71370614 original size:19 final size:19
Alignment explanation
Indices: 71370568--71370615 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
71370558 GTATATATTT
71370568 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
71370586 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAGA
*
71370605 TAAGTTTTATT
1 TAAATTTTATT
71370616 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:71370673 original size:43 final size:42
Alignment explanation
Indices: 71370625--71370722 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 42
71370615 TCATATTCTA
71370625 GAAATATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGG
1 GAAATATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAA-G
* *
71370668 GAAATATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAG
1 GAAATATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAG
71370710 GAAACTATTTTCT
1 GAAA-TATTTTCT
71370723 CAATTAGAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
42 5 0.10
43 45 0.88
44 1 0.02
ACGTcount: A:0.32, C:0.05, G:0.13, T:0.50
Consensus pattern (42 bp):
GAAATATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAG
Found at i:71382582 original size:28 final size:28
Alignment explanation
Indices: 71382525--71382584 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
71382515 AAAAAACCTT
* *
71382525 AAAAAAAGTAAAAATATTCAAATTTATA
1 AAAAAAAGTAAAAATATTAAAATATATA
* *
71382553 AAAAAAATTAAAAATTCTTAAAATAT-TA
1 AAAAAAAGTAAAAA-TATTAAAATATATA
71382581 AAAA
1 AAAA
71382585 TTTATAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (28 bp):
AAAAAAAGTAAAAATATTAAAATATATA
Found at i:71382592 original size:18 final size:18
Alignment explanation
Indices: 71382535--71382592 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
71382525 AAAAAAAGTA
*
71382535 AAAATATT-CAAATTTAT
1 AAAATATTAAAAATTTAT
*
71382552 AAAAAAAATTAAAAATTCT-T
1 --AAAATATTAAAAATT-TAT
71382572 AAAATATTAAAAATTTAT
1 AAAATATTAAAAATTTAT
71382590 AAA
1 AAA
71382593 CAATTTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 1 0.03
18 18 0.55
19 7 0.21
20 6 0.18
21 1 0.03
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
AAAATATTAAAAATTTAT
Found at i:71385439 original size:29 final size:28
Alignment explanation
Indices: 71385351--71385452 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
71385341 TACTCAATCA
* *
71385351 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
71385380 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
71385409 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
71385438 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
71385453 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:71389039 original size:40 final size:39
Alignment explanation
Indices: 71388863--71389038 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 39
71388853 GCTACTCGTT
*
71388863 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
71388903 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* * *
71388943 CCAATGCC-TCGG-CTTAG-CCGGAATTAGTAATTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
*
71388979 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
71389019 CAAATGCCTTCGGATCTTAG
1 CAAATGCCTTCGGA-CTTAG
71389039 TGAACATATA
Statistics
Matches: 122, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
36 24 0.20
37 8 0.07
38 2 0.02
39 7 0.06
40 79 0.65
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:71392451 original size:28 final size:28
Alignment explanation
Indices: 71392394--71392453 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
71392384 AAAAAACCTT
* *
71392394 AAAAAAAGTAAAAATATTCAAATTTATA
1 AAAAAAAGTAAAAATATTAAAATATATA
* *
71392422 AAAAAAATTAAAAATTCTTAAAATAT-TA
1 AAAAAAAGTAAAAA-TATTAAAATATATA
71392450 AAAA
1 AAAA
71392454 TTTATAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (28 bp):
AAAAAAAGTAAAAATATTAAAATATATA
Found at i:71392461 original size:18 final size:18
Alignment explanation
Indices: 71392404--71392461 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
71392394 AAAAAAAGTA
*
71392404 AAAATATT-CAAATTTAT
1 AAAATATTAAAAATTTAT
*
71392421 AAAAAAAATTAAAAATTCT-T
1 --AAAATATTAAAAATT-TAT
71392441 AAAATATTAAAAATTTAT
1 AAAATATTAAAAATTTAT
71392459 AAA
1 AAA
71392462 CAATTTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 1 0.03
18 18 0.55
19 7 0.21
20 6 0.18
21 1 0.03
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
AAAATATTAAAAATTTAT
Found at i:71395305 original size:29 final size:28
Alignment explanation
Indices: 71395217--71395318 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
71395207 TACTCAATCA
* *
71395217 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
71395246 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
71395275 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
71395304 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
71395319 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:71402329 original size:28 final size:28
Alignment explanation
Indices: 71402272--71402331 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
71402262 AAAAAACCTT
* *
71402272 AAAAAAAGTAAAAATATTCAAATTTATA
1 AAAAAAAGTAAAAATATTAAAATATATA
* *
71402300 AAAAAAATTAAAAATTCTTAAAATAT-TA
1 AAAAAAAGTAAAAA-TATTAAAATATATA
71402328 AAAA
1 AAAA
71402332 TTTATAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (28 bp):
AAAAAAAGTAAAAATATTAAAATATATA
Found at i:71402339 original size:18 final size:18
Alignment explanation
Indices: 71402282--71402339 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
71402272 AAAAAAAGTA
*
71402282 AAAATATT-CAAATTTAT
1 AAAATATTAAAAATTTAT
*
71402299 AAAAAAAATTAAAAATTCT-T
1 --AAAATATTAAAAATT-TAT
71402319 AAAATATTAAAAATTTAT
1 AAAATATTAAAAATTTAT
71402337 AAA
1 AAA
71402340 CAATTTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 1 0.03
18 18 0.55
19 7 0.21
20 6 0.18
21 1 0.03
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
AAAATATTAAAAATTTAT
Found at i:71405157 original size:29 final size:28
Alignment explanation
Indices: 71405125--71405198 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
71405115 GATTCAAGCC
* *
71405125 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACAC-TAGTGCCATACAGTACAAACT
* *
71405154 CGCACACTTAGTGCCGTACAGTACAAGCT
1 CGCACAC-TAGTGCCATACAGTACAAACT
71405183 CGCACACTCAGTGCCA
1 CGCACACT-AGTGCCA
71405199 ATCTCGTCAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 1 0.03
29 37 0.97
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.19
Consensus pattern (28 bp):
CGCACACTAGTGCCATACAGTACAAACT
Found at i:71408648 original size:40 final size:40
Alignment explanation
Indices: 71408611--71408835 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
71408601 GCTACTCGTT
*
71408611 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
71408651 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
71408691 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
71408730 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
** * * *
71408770 CAAATGCCTTC-GGATCTTAGTTCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
71408811 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71408836 CATCATTCGA
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 117 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:71408729 original size:79 final size:79
Alignment explanation
Indices: 71408611--71408835 Score: 285
Period size: 79 Copynumber: 2.8 Consensus size: 79
71408601 GCTACTCGTT
* * * *
71408611 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
71408676 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* *
71408691 CCAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAATTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAATTCGCACAAATGCCTTCGGGA-CTTAGCCCG
71408754 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* ** * *
71408770 CAAATGCCTTCGGATCTTAGTTCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
71408834 GA
64 GA
71408836 CATCATTCGA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.03
79 66 0.52
80 42 0.33
81 14 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:71408796 original size:119 final size:120
Alignment explanation
Indices: 71408611--71408835 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
71408601 GCTACTCGTT
71408611 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
71408676 ATTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAATTCGCA
66 ATATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAATTCGCA
* * ***
71408730 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTT
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
*
71408792 CGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
71408836 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 6 0.07
119 69 0.75
120 17 0.18
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAATTCGCA
Found at i:71411470 original size:47 final size:47
Alignment explanation
Indices: 71411334--71411480 Score: 195
Period size: 47 Copynumber: 3.1 Consensus size: 47
71411324 TATATATATT
* * * *
71411334 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
71411381 CCACATTGGCCATTCGGCCTTATCACACATATGCATGGTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
71411428 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
71411475 TCACAT
1 TCACAT
71411481 AAAATCCTAA
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:71421310 original size:35 final size:35
Alignment explanation
Indices: 71421235--71421312 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
71421225 GTGTCACCCT
* * *
71421235 GAAGGACCTATATATCATTTACACGGTGTTGTCCC
1 GAAGGACCTATATAACATTTACACGGTGATGCCCC
* *
71421270 AAAGGACCTATATAACATTTACATGGTGATGCCCC
1 GAAGGACCTATATAACATTTACACGGTGATGCCCC
71421305 GAAGGACC
1 GAAGGACC
71421313 AGTAGATAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (35 bp):
GAAGGACCTATATAACATTTACACGGTGATGCCCC
Found at i:71423315 original size:46 final size:45
Alignment explanation
Indices: 71423220--71423342 Score: 133
Period size: 46 Copynumber: 2.6 Consensus size: 45
71423210 GACGAGGGAT
* *
71423220 AGTGTAAGACATGTTTGGGACATGCATCAGCCTCTAGACGTAAGCC
1 AGTGTAAGACATGTTTGGGACATGCATC-GACTCGAGACGTAAGCC
* *
71423266 AGTGTAAGACATGTTTGGGACATGCATCGACTACGAGATG-ATAGTC
1 AGTGTAAGACATGTTTGGGACATGCATCGACT-CGAGACGTA-AGCC
*
71423312 AGTGTGAA-ACCATGTCTGGGACATGGCATCG
1 AGTGT-AAGA-CATGTTTGGGACAT-GCATCG
71423343 GCTTGAGATA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
45 4 0.06
46 42 0.63
47 15 0.22
48 6 0.09
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTTTGGGACATGCATCGACTCGAGACGTAAGCC
Found at i:71425985 original size:54 final size:54
Alignment explanation
Indices: 71425900--71426032 Score: 221
Period size: 54 Copynumber: 2.5 Consensus size: 54
71425890 TCTTATGGCA
* *
71425900 GGATTACCAGTCCAGGCTAAATCCCCGATATCGTAAACTTATAAAATGATGCCG
1 GGATTACCAGTCCAGGCTAAATCCCCCATATCGTAAACTCATAAAATGATGCCG
* *
71425954 GGATTACCAGTCCAAGCTAAATCCCCCATATCGTAAACTCATAAAGTGATGCCG
1 GGATTACCAGTCCAGGCTAAATCCCCCATATCGTAAACTCATAAAATGATGCCG
*
71426008 GGATTACCAGTCTAGGCTAAATCCC
1 GGATTACCAGTCCAGGCTAAATCCC
71426033 TTATTACGAC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (54 bp):
GGATTACCAGTCCAGGCTAAATCCCCCATATCGTAAACTCATAAAATGATGCCG
Found at i:71428316 original size:29 final size:29
Alignment explanation
Indices: 71428283--71428469 Score: 238
Period size: 29 Copynumber: 6.6 Consensus size: 29
71428273 GTGACGAGAT
71428283 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
71428312 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
71428341 TGGCACTAAGTGTGTGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
71428370 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * **
71428399 TGGCACT--GTGTGCGAGCTCG-AAGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
71428425 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
71428454 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
71428470 AAATCGAGTA
Statistics
Matches: 141, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
26 11 0.08
27 10 0.07
28 12 0.09
29 108 0.77
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Done.