Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 229 of 433
Found at i:71436261 original size:29 final size:29
Alignment explanation
Indices: 71436228--71436415 Score: 238
Period size: 29 Copynumber: 6.6 Consensus size: 29
71436218 GTGACGAGAT
71436228 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
71436257 TGGCACTAAGTGTGCGTGTTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
71436286 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
71436315 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
71436344 TGGCACT--GTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
71436371 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
71436400 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
71436416 AAATCGAGTA
Statistics
Matches: 141, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
27 21 0.15
28 2 0.01
29 118 0.84
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:71436409 original size:85 final size:86
Alignment explanation
Indices: 71436228--71436414 Score: 234
Period size: 85 Copynumber: 2.2 Consensus size: 86
71436218 GTGACGAGAT
* * * * *
71436228 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGTTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACT-AGTGTGCGAGCTCGAAAGATATGGCACT
* *
71436293 AAGTGTGCGTGCTGGAAATATA
65 AAGTGTGCGGGCTGGAAATACA
* *
71436315 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACT-GTGTGCGAGCTCGAAGGGTATGGCACTA
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAGTGTGCGAGCTCGAAAGATATGGCACTA
* * *
71436379 TGTGTGCGGGCT-TAAATCGCA
66 AGTGTGCGGGCTGGAAAT-ACA
71436400 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
71436415 GAAATCGAGT
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
84 4 0.05
85 48 0.55
87 35 0.40
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (86 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAGTGTGCGAGCTCGAAAGATATGGCACTA
AGTGTGCGGGCTGGAAATACA
Found at i:71442406 original size:47 final size:47
Alignment explanation
Indices: 71442338--71442479 Score: 214
Period size: 47 Copynumber: 3.0 Consensus size: 47
71442328 GTTGAATTTA
*
71442338 AAGCTTGTTAAA-TTGCTCTTAATATTTCCAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
* * *
71442384 AAGGTTGTTAAATTTGCTCTTAATATTTCTGGATAAGTTATTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
* * *
71442431 AAGCTTGTTAAATTTTCCCTTATTATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
71442478 AA
1 AA
71442480 AGAAAATTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
46 11 0.13
47 74 0.87
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:71443346 original size:45 final size:45
Alignment explanation
Indices: 71443282--71443486 Score: 287
Period size: 45 Copynumber: 4.6 Consensus size: 45
71443272 ATATCACATA
* *
71443282 ATACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
71443327 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
71443372 ATACTATTCGGG-CTTCGAGCCTAGCAGG-TGA-AATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCT-ATAATGCCGGTGAG
* * *
71443415 ATACTATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCTGGTGAA
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
71443460 ATGA-TA-TCGGG-CTTCGAGCCTAGCAGG
1 AT-ACTATTCGGGCCTTTGAGCCTAGCAGG
71443487 TGAAATACCG
Statistics
Matches: 146, Mismatches: 9, Indels: 12
0.87 0.05 0.07
Matches are distributed among these distances:
43 39 0.27
44 36 0.25
45 70 0.48
46 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:71443449 original size:88 final size:88
Alignment explanation
Indices: 71443281--71443530 Score: 332
Period size: 88 Copynumber: 2.9 Consensus size: 88
71443271 AATATCACAT
* * *
71443281 AATACTATTTGGGCCTTTGAGCCTAGCAGGCT-ATAATACCGGTGAGATACTATTCGGGCCTTTG
1 AATACTATTCGGG-CTTCGAGCCTAGCAGG-TGA-AATACCGGTGAGATACTATTCGGGCTTTTG
71443345 AGCCTAGCAGGCTATAATGCCGGTGA
63 AGCCTAGCAGGCTATAATGCCGGTGA
* *
71443371 GATACTATTCGGGCTTCGAGCCTAGCAGGTGAAATGCCGGTGAGATACTATTCGGGCTTTTGAGC
1 AATACTATTCGGGCTTCGAGCCTAGCAGGTGAAATACCGGTGAGATACTATTCGGGCTTTTGAGC
*
71443436 CTAGCAGGCTATAATGCTGGTGA
66 CTAGCAGGCTATAATGCCGGTGA
* *
71443459 AATGA-TA-TCGGGCTTCGAGCCTAGCAGGTGAAATACCGGTGA-ATGA--ATTCGGGTTTTTAA
1 AAT-ACTATTCGGGCTTCGAGCCTAGCAGGTGAAATACCGGTGAGAT-ACTATTCGGGCTTTTGA
*
71443519 ACCTAGCAGGCT
64 GCCTAGCAGGCT
71443531 GAATGTCGGT
Statistics
Matches: 146, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
85 23 0.16
86 2 0.01
87 35 0.24
88 58 0.40
89 17 0.12
90 11 0.08
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (88 bp):
AATACTATTCGGGCTTCGAGCCTAGCAGGTGAAATACCGGTGAGATACTATTCGGGCTTTTGAGC
CTAGCAGGCTATAATGCCGGTGA
Found at i:71444058 original size:16 final size:18
Alignment explanation
Indices: 71444027--71444059 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
71444017 AACTCGTCAC
71444027 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
71444045 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
71444060 AGCTTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:71447601 original size:23 final size:23
Alignment explanation
Indices: 71447573--71447649 Score: 86
Period size: 23 Copynumber: 3.4 Consensus size: 23
71447563 TGATGAACAA
*
71447573 TAAGCTCTATTGAGCTGAAACGG
1 TAAGCTCTATCGAGCTGAAACGG
* *
71447596 TAAGCTTTATCGAGCTG-AACAG
1 TAAGCTCTATCGAGCTGAAACGG
*
71447618 TAAGCTC-ATACGAGCTGAAACGA
1 TAAGCTCTAT-CGAGCTGAAACGG
*
71447641 TAAACTCTA
1 TAAGCTCTA
71447650 ATAAGCTAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.05
22 17 0.39
23 24 0.55
24 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (23 bp):
TAAGCTCTATCGAGCTGAAACGG
Found at i:71447623 original size:22 final size:22
Alignment explanation
Indices: 71447566--71447636 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
71447556 CCCCACCTGA
* * *
71447566 TGAACAATAAGCTCTATTGAGC
1 TGAACAGTAAGCTTTATCGAGC
*
71447588 TGAAACGGTAAGCTTTATCGAGC
1 TG-AACAGTAAGCTTTATCGAGC
*
71447611 TGAACAGTAAGC-TCATACGAGC
1 TGAACAGTAAGCTTTAT-CGAGC
71447633 TGAA
1 TGAA
71447637 ACGATAAACT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 3 0.07
22 20 0.49
23 18 0.44
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (22 bp):
TGAACAGTAAGCTTTATCGAGC
Found at i:71453283 original size:40 final size:39
Alignment explanation
Indices: 71453172--71453323 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
71453162 ATAATCACGT
* * *
71453172 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
71453212 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
71453252 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
71453292 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
71453324 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:71453306 original size:80 final size:80
Alignment explanation
Indices: 71453172--71453323 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
71453162 ATAATCACGT
* *
71453172 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
71453237 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
71453252 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGGCTTAG
71453315 CCCGGATAT
64 CCCGGATAT
71453324 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:71463251 original size:14 final size:14
Alignment explanation
Indices: 71463232--71463259 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
71463222 AATTGGAAAG
71463232 GTTTGATAAATGTT
1 GTTTGATAAATGTT
71463246 GTTTGATAAATGTT
1 GTTTGATAAATGTT
71463260 TTGTGTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (14 bp):
GTTTGATAAATGTT
Found at i:71463399 original size:40 final size:40
Alignment explanation
Indices: 71463344--71463491 Score: 154
Period size: 40 Copynumber: 3.7 Consensus size: 40
71463334 TGAATGATAC
* * * *
71463344 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTAAAT
* * *
71463384 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTAAAT
* * **
71463424 CCGGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTAAAT
* * *
71463464 CCGGGTTAAGACCTGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
71463492 TTGTGGTTAT
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 89 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTAAAT
Found at i:71463501 original size:80 final size:80
Alignment explanation
Indices: 71463344--71463504 Score: 189
Period size: 80 Copynumber: 2.0 Consensus size: 80
71463334 TGAATGATAC
* * ** *
71463344 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
*
71463409 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* * * * *
71463424 CCGGGCTAAGACCTGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCTGAAGGCAATT-
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGC-ATTC
**
71463488 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
71463504 C
1 C
71463505 TAGCTAAATT
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 64 0.96
81 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:71465603 original size:24 final size:23
Alignment explanation
Indices: 71465576--71465624 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
71465566 GGTTTTTACC
*
71465576 ATTAATAATACTATTTTAACATTT
1 ATTAA-AATACTAATTTAACATTT
* *
71465600 ATTAAATTACTAATTTAACCTTT
1 ATTAAAATACTAATTTAACATTT
71465623 AT
1 AT
71465625 CATAACCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (23 bp):
ATTAAAATACTAATTTAACATTT
Found at i:71472217 original size:42 final size:40
Alignment explanation
Indices: 71472171--71472323 Score: 139
Period size: 42 Copynumber: 3.7 Consensus size: 40
71472161 AATCATACCA
* *
71472171 ATGCCATATCCTAGATATAGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACAT--GATCTCATATCG
*
71472213 ATGCCAATAGCCCA-ACTATGGTCTTACATGATTCTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACATGA-TCTCATATCG
* * * **
71472255 ATGCCATGTCCCAGACATGGTCCTACACAAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGT-CT-TACATGATCTCAT-ATCG
*
71472297 ATGCCATATCCCAGATATGGTATTACA
1 ATGCCATATCCCAGATATGGTCTTACA
71472324 CGTAAACTCA
Statistics
Matches: 91, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
40 3 0.03
41 14 0.15
42 50 0.55
43 24 0.26
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (40 bp):
ATGCCATATCCCAGATATGGTCTTACATGATCTCATATCG
Found at i:71472324 original size:42 final size:44
Alignment explanation
Indices: 71472245--71472338 Score: 115
Period size: 42 Copynumber: 2.2 Consensus size: 44
71472235 CTTACATGAT
* *
71472245 TCTCAT-ATCGATGCCATGTCCCAGACATGGTCCTACAC-AAAA
1 TCTCATAATCGATGCCATATCCCAGACATGGTACTACACGAAAA
* * *
71472287 TCTCATAAT-GATGCCATATCCCAGATATGGTATTACACGTAAA
1 TCTCATAATCGATGCCATATCCCAGACATGGTACTACACGAAAA
71472330 -CTCATAATC
1 TCTCATAATC
71472339 CTAATGTCAT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
42 39 0.89
43 5 0.11
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (44 bp):
TCTCATAATCGATGCCATATCCCAGACATGGTACTACACGAAAA
Found at i:71475963 original size:45 final size:45
Alignment explanation
Indices: 71475913--71476010 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 45
71475903 GCCAAAACAT
*
71475913 ATGTCATATATATCATGAACTCAGACCACAACTCAATGAGTTCGG
1 ATGTCATATATATCATGAACTCAGACCACAACTCAATGAGTTCAG
* * **
71475958 ATGTCACATATATCATGAACTCAGACCATAGGTCAATGAGTTCAG
1 ATGTCATATATATCATGAACTCAGACCACAACTCAATGAGTTCAG
*
71476003 ATTTCATA
1 ATGTCATA
71476011 GTTCCTAGTG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (45 bp):
ATGTCATATATATCATGAACTCAGACCACAACTCAATGAGTTCAG
Found at i:71481714 original size:3 final size:3
Alignment explanation
Indices: 71481706--71481755 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
71481696 GGCATCGGCT
71481706 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
71481754 TC
1 TC
71481756 TACTGAAGCC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:71484380 original size:37 final size:37
Alignment explanation
Indices: 71484330--71484401 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 37
71484320 GACCCTAACG
71484330 GACATGCACCTTAACAACAACACTATTGA-AAAAGACA
1 GACATGCACCTTAACAACAACACTATT-ACAAAAGACA
*
71484367 GACATGCACCTTAACTACAACACTATTACAAAAGA
1 GACATGCACCTTAACAACAACACTATTACAAAAGA
71484402 GTTTTTGGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
36 1 0.03
37 32 0.97
ACGTcount: A:0.47, C:0.25, G:0.10, T:0.18
Consensus pattern (37 bp):
GACATGCACCTTAACAACAACACTATTACAAAAGACA
Found at i:71489361 original size:39 final size:39
Alignment explanation
Indices: 71489206--71489362 Score: 244
Period size: 39 Copynumber: 4.0 Consensus size: 39
71489196 CCCGCACAAA
* * * *
71489206 TGCCTTCGGGACTTAACCCGGATATCACAACTCGTACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACATT
*
71489246 TGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
71489285 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
71489324 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
71489363 CATATACATC
Statistics
Matches: 109, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 96 0.88
40 12 0.11
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.28
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
Found at i:71496871 original size:52 final size:53
Alignment explanation
Indices: 71496759--71496894 Score: 145
Period size: 52 Copynumber: 2.6 Consensus size: 53
71496749 TGACGGAATA
* * * *
71496759 GATGTGATATGTGCACCCGTATACGACCATAGTTGTGCTATGGCATCAGTGTAT
1 GATGTGATATGTGC-CCCGTATAAGACCATAGCTGGGCTATGACATCAGTGTAT
* * *
71496813 --TATGATATGTGCTCCCATATAAGACCATGGCTGGGCTATGACATC-G-GTAT
1 GATGTGATATGTGC-CCCGTATAAGACCATAGCTGGGCTATGACATCAGTGTAT
71496863 GATGTGATAATGTGCCTCCGTATAAGACCATA
1 GATGTGAT-ATGTGCC-CCGTATAAGACCATA
71496895 TCCTGGATAT
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
50 4 0.06
51 1 0.01
52 43 0.64
53 19 0.28
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (53 bp):
GATGTGATATGTGCCCCGTATAAGACCATAGCTGGGCTATGACATCAGTGTAT
Found at i:71496936 original size:46 final size:46
Alignment explanation
Indices: 71496879--71496985 Score: 196
Period size: 46 Copynumber: 2.3 Consensus size: 46
71496869 ATAATGTGCC
*
71496879 TCCGTATAAGACCATATCCTGGATATGGCATCGGTATGATATGTGA
1 TCCGTATAAGACCATATCCGGGATATGGCATCGGTATGATATGTGA
71496925 TCCGTATAAGACCATATCCGGGATATGGCATCGGTATGATATGTGA
1 TCCGTATAAGACCATATCCGGGATATGGCATCGGTATGATATGTGA
*
71496971 TCCGTGTAAGACCAT
1 TCCGTATAAGACCAT
71496986 GGCAGGGCTA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (46 bp):
TCCGTATAAGACCATATCCGGGATATGGCATCGGTATGATATGTGA
Found at i:71496998 original size:46 final size:46
Alignment explanation
Indices: 71496879--71496999 Score: 170
Period size: 46 Copynumber: 2.6 Consensus size: 46
71496869 ATAATGTGCC
* **
71496879 TCCGTATAAGACCATATCCTGGATATGGCATCGGTATGATATGTGA
1 TCCGTATAAGACCATAGCAGGGATATGGCATCGGTATGATATGTGA
* *
71496925 TCCGTATAAGACCATATCCGGGATATGGCATCGGTATGATATGTGA
1 TCCGTATAAGACCATAGCAGGGATATGGCATCGGTATGATATGTGA
* * *
71496971 TCCGTGTAAGACCATGGCAGGGCTATGGC
1 TCCGTATAAGACCATAGCAGGGATATGGC
71497000 TTCAGTGTGT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (46 bp):
TCCGTATAAGACCATAGCAGGGATATGGCATCGGTATGATATGTGA
Found at i:71497289 original size:19 final size:19
Alignment explanation
Indices: 71497262--71497304 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
71497252 GCTTCTATGC
*
71497262 CTATGAGCTTACTAAGCTT
1 CTATAAGCTTACTAAGCTT
*
71497281 CTATAAGCTTACTAGGCTT
1 CTATAAGCTTACTAAGCTT
71497300 CTATA
1 CTATA
71497305 TATAAGCTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (19 bp):
CTATAAGCTTACTAAGCTT
Found at i:71504389 original size:13 final size:13
Alignment explanation
Indices: 71504373--71504397 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71504363 TCGTAGTATA
71504373 AAAACATAGGCTT
1 AAAACATAGGCTT
71504386 AAAACATAGGCT
1 AAAACATAGGCT
71504398 CATATAGGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (13 bp):
AAAACATAGGCTT
Found at i:71504433 original size:13 final size:12
Alignment explanation
Indices: 71504414--71504447 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
71504404 GGAGCATGTA
71504414 TAAAACATAACT
1 TAAAACATAACT
71504426 TGAAAACATAACT
1 T-AAAACATAACT
71504439 TAAAA-ATAA
1 TAAAACATAA
71504448 TGTTTATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.19
12 5 0.24
13 12 0.57
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.24
Consensus pattern (12 bp):
TAAAACATAACT
Found at i:71505914 original size:37 final size:37
Alignment explanation
Indices: 71505859--71505986 Score: 184
Period size: 37 Copynumber: 3.4 Consensus size: 37
71505849 TTATTACGAA
* * * *
71505859 GTCTTACCCGGACATAATCTCCACACATAATCATTGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
* *
71505896 GACTCACCCGGACATAATCTCCACATGTAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
*
71505933 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
71505970 GTCTCACCCGGAACATA
1 GTCTCACCCGG-ACATA
71505987 TTTCCAAGTT
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
37 75 0.94
38 5 0.06
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.23
Consensus pattern (37 bp):
GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:71506084 original size:48 final size:47
Alignment explanation
Indices: 71506026--71506182 Score: 242
Period size: 48 Copynumber: 3.3 Consensus size: 47
71506016 TGTTACAACA
* *
71506026 TTCACGTTAGCCACTCGGCTTTACCACATATACATATCACACATACAT
1 TTCACATTAGCCA-TCGGCTTTACCACATATACATATCACACATATAT
* * *
71506074 TTCACATTAGCCATTCGGCTTTACTACATATACATATCTCATATATAT
1 TTCACATTAGCCA-TCGGCTTTACCACATATACATATCACACATATAT
*
71506122 TTCACATTAGCCATTGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATCGGCTTTACCACATATACATATCACACATATAT
71506169 TTCACATTAGCCAT
1 TTCACATTAGCCAT
71506183 TAGGCCTTAT
Statistics
Matches: 99, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 44 0.44
48 55 0.56
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (47 bp):
TTCACATTAGCCATCGGCTTTACCACATATACATATCACACATATAT
Found at i:71506295 original size:49 final size:49
Alignment explanation
Indices: 71506178--71506298 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
71506168 TTTCACATTA
*
71506178 GCCATTAGGCCTTATCACACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
71506227 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
71506276 GCCATTAGGCCTTATCACATATA
1 GCCATTAGGCCTTATCACATATA
71506299 CTATTATGTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:71510166 original size:40 final size:40
Alignment explanation
Indices: 71510117--71510386 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
71510107 CCAGCATGAT
* * *
71510117 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
71510157 TGCTCTTCGG-ACTTAGTCCGGTTGCATTACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
71510196 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
71510236 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
71510276 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
71510316 TGCTCTTCGGAACTTAGTCCGG-TACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
71510355 TGCTCTTCGGGATTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
71510387 CTCAATTCTC
Statistics
Matches: 216, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 70 0.32
40 146 0.68
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:71510286 original size:80 final size:79
Alignment explanation
Indices: 71510117--71510386 Score: 434
Period size: 79 Copynumber: 3.4 Consensus size: 79
71510107 CCAGCATGAT
* * * *
71510117 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG-ACTTAGTCCGGTTG
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG-TA
*
71510181 CATTACTAGCACGAA
65 CATCACTAGCACGAA
71510196 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG-TA
71510261 CATCACTAGCACGAA
65 CATCACTAGCACGAA
71510276 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTAC
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTAC
*
71510341 ATCACTAGCATGAA
66 ATCACTAGCACGAA
* * *
71510355 TGCTCTTCGGGATTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
71510387 CTCAATTCTC
Statistics
Matches: 180, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
79 92 0.51
80 88 0.49
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (79 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTAC
ATCACTAGCACGAA
Found at i:71510342 original size:119 final size:119
Alignment explanation
Indices: 71510117--71510386 Score: 443
Period size: 119 Copynumber: 2.3 Consensus size: 119
71510107 CCAGCATGAT
* * * *
71510117 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGTCCGGTTGC
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGTCCGGATAC
*
71510182 ATTACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
66 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
71510236 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG-ACTTAGTCCGGATA
*
71510301 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG-TACATCACTAGCATGAA
65 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
71510355 TGCTCTTCGGGATTTAGTCCGGATATATCACT
1 TGCTCTTCGGGACTTAGTCCGGATACATCACT
71510387 CTCAATTCTC
Statistics
Matches: 140, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
119 92 0.66
120 48 0.34
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGTCCGGATAC
ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:71512257 original size:37 final size:37
Alignment explanation
Indices: 71512202--71512329 Score: 211
Period size: 37 Copynumber: 3.4 Consensus size: 37
71512192 TTATTACGAA
* *
71512202 GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
*
71512239 GTCTCACCCGGACATAATCTCCACATGTAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
*
71512276 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
71512313 GTCTCACCCGGAACATA
1 GTCTCACCCGG-ACATA
71512330 TTTCCAAGTT
Statistics
Matches: 84, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 79 0.94
38 5 0.06
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:71512427 original size:48 final size:48
Alignment explanation
Indices: 71512369--71512546 Score: 275
Period size: 48 Copynumber: 3.7 Consensus size: 48
71512359 TGTTACAACA
* *
71512369 TTCACGTTAGCCATTCGGCTTTACCACATATACATATCACACATACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
71512417 TTCACATTAGCCATTCGGCTTTACTACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
71512465 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
71512513 TTCACATTAGCCATTAGGCCTTATCACACATATA
1 TTCACATTAGCCATTCGGCTTTA-C-CACATATA
71512547 TACACTTTCA
Statistics
Matches: 118, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
48 109 0.92
49 1 0.01
50 8 0.07
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:71512639 original size:49 final size:49
Alignment explanation
Indices: 71512522--71512642 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
71512512 TTTCACATTA
*
71512522 GCCATTAGGCCTTATCACACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
71512571 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
71512620 GCCATTAGGCCTTATCACATATA
1 GCCATTAGGCCTTATCACATATA
71512643 CTATTATGTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:71516503 original size:40 final size:40
Alignment explanation
Indices: 71516454--71516725 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
71516444 CCAGCATGAT
* * *
71516454 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * *
71516494 TGCTCTTCGGGACTTAGTCCGGTTGCATTACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
71516534 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
71516574 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
71516614 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
71516654 TGCTCTTCGGAACTTAGTCCGGGTACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
71516694 TGCTCTTCGGGATTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
71516726 CTCAATTCTC
Statistics
Matches: 217, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:71518598 original size:37 final size:37
Alignment explanation
Indices: 71518543--71518669 Score: 202
Period size: 37 Copynumber: 3.4 Consensus size: 37
71518533 TTATTACGAA
* *
71518543 GTCTTACCCGGACATAATCTCCACACATAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
*
71518580 GTCTCACCCGGACATAATCTCCACATGTAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
*
71518617 GTCTTACCCGGACATAATCTCCACACGTAGTCATC-G
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
71518653 GTCTCACCCGGAACATA
1 GTCTCACCCGG-ACATA
71518670 TTTCCAAGTT
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
36 11 0.13
37 72 0.87
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (37 bp):
GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:71518767 original size:48 final size:48
Alignment explanation
Indices: 71518709--71518886 Score: 275
Period size: 48 Copynumber: 3.7 Consensus size: 48
71518699 TGTTACAACA
* *
71518709 TTCACGTTAGCCATTCGGCTTTACCACATATACATATCACACATACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
71518757 TTCACATTAGCCATTCGGCTTTACTACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
71518805 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
71518853 TTCACATTAGCCATTAGGCCTTATCACACATATA
1 TTCACATTAGCCATTCGGCTTTA-C-CACATATA
71518887 TACACTTTCA
Statistics
Matches: 118, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
48 109 0.92
49 1 0.01
50 8 0.07
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:71518979 original size:49 final size:49
Alignment explanation
Indices: 71518862--71518982 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
71518852 TTTCACATTA
*
71518862 GCCATTAGGCCTTATCACACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
71518911 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
71518960 GCCATTAGGCCTTATCACATATA
1 GCCATTAGGCCTTATCACATATA
71518983 CTATTATGTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:71523045 original size:50 final size:49
Alignment explanation
Indices: 71522877--71523108 Score: 261
Period size: 49 Copynumber: 4.7 Consensus size: 49
71522867 TCTATTGTGA
*
71522877 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
71522926 GAT--TGCATGTGTAGTACTTAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCATG--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * **
71522976 CGATCATGTGTTTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
71523026 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 -GGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
***
71523076 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCATGTGTGTAGTACTAAGTGCAGGCTACTA
71523109 TGCGTACCAG
Statistics
Matches: 154, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
47 1 0.01
49 68 0.44
50 48 0.31
51 35 0.23
53 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
GGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:71528565 original size:39 final size:39
Alignment explanation
Indices: 71528452--71528646 Score: 221
Period size: 39 Copynumber: 4.9 Consensus size: 39
71528442 CTCGTTCAAA
* * * *
71528452 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
71528493 -GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
* *
71528532 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * * *
71528571 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * *
71528610 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
71528647 TTCATACACA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
39 100 0.72
40 39 0.28
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:71528615 original size:78 final size:79
Alignment explanation
Indices: 71528452--71528648 Score: 254
Period size: 78 Copynumber: 2.5 Consensus size: 79
71528442 CTCGTTCAAA
* * * * * **
71528452 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGACTTAACCCGGATAT
71528517 CACAACTCGCACAAT
65 CACAACTCGCACAAT
*
71528532 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGG-CTTAGCCCGGATATC
1 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGACTTAACCCGGATATC
* *
71528596 ACAATTCGCACATT
66 ACAACTCGCACAAT
* *
71528610 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT
71528649 CATACACATC
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
78 60 0.58
79 34 0.33
80 10 0.10
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (79 bp):
CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTTGCCTTCGGGACTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:71528647 original size:39 final size:39
Alignment explanation
Indices: 71528492--71528648 Score: 244
Period size: 39 Copynumber: 4.0 Consensus size: 39
71528482 CCCGCACAAA
* * *
71528492 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACATT
* *
71528532 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
71528571 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
71528610 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
71528649 CATACACATC
Statistics
Matches: 108, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 96 0.89
40 11 0.10
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.27
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
Found at i:71537164 original size:40 final size:40
Alignment explanation
Indices: 71537118--71537343 Score: 239
Period size: 40 Copynumber: 5.7 Consensus size: 40
71537108 ACTACTCGTT
* *
71537118 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
71537158 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
71537198 CCAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
71537238 CAAATGCCTTC-GGATCTTAGTCTGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
** * * *
71537279 CAAA-GCCTTC-GGATCTTAGTTCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
71537319 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71537344 CATCATTCGA
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 151 0.90
41 13 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:71543601 original size:32 final size:32
Alignment explanation
Indices: 71543556--71543644 Score: 151
Period size: 32 Copynumber: 2.8 Consensus size: 32
71543546 TTTAGTAGCA
** *
71543556 GTATTATAATTGGCACAAAGCCATCGGTAACT
1 GTATTATGTTTGGCACATAGCCATCGGTAACT
71543588 GTATTATGTTTGGCACATAGCCATCGGTAACT
1 GTATTATGTTTGGCACATAGCCATCGGTAACT
71543620 GTATTATGTTTGGCACATAGCCATC
1 GTATTATGTTTGGCACATAGCCATC
71543645 AGCGGCGGTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (32 bp):
GTATTATGTTTGGCACATAGCCATCGGTAACT
Found at i:71544207 original size:27 final size:27
Alignment explanation
Indices: 71544156--71544244 Score: 103
Period size: 27 Copynumber: 3.3 Consensus size: 27
71544146 CAAAATAGTC
71544156 ATTTTAC-CGTACATAGGGTATTTCGGTA
1 ATTTTACAC-TACA-AGGGTATTTCGGTA
*
71544184 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGGTA
* *
71544211 ATTTTACA-AACCAAGGGTATTT-TGTA
1 ATTTTACACTA-CAAGGGTATTTCGGTA
71544237 ATTTTACA
1 ATTTTACA
71544245 AAGTGGGGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
26 11 0.20
27 32 0.58
28 11 0.20
29 1 0.02
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGGTA
Found at i:71544272 original size:27 final size:27
Alignment explanation
Indices: 71544209--71544354 Score: 179
Period size: 27 Copynumber: 5.4 Consensus size: 27
71544199 GGTATTTCGA
***
71544209 TAATTTTACAAACCAAGGGTATTTT-G
1 TAATTTTACAAACTGGGGGTATTTTAG
* *
71544235 TAATTTTACAAAGTGGGGGTATTTCAG
1 TAATTTTACAAACTGGGGGTATTTTAG
71544262 TAATTTTACAAACTGGGGGTATTTTAG
1 TAATTTTACAAACTGGGGGTATTTTAG
* *
71544289 TACTTTTACAAA-TCGAGGGTATTTTAG
1 TAATTTTACAAACT-GGGGGTATTTTAG
* * *
71544316 TAATTTTACAAATTGGGGATATTTTGG
1 TAATTTTACAAACTGGGGGTATTTTAG
71544343 TAATTTTACAAA
1 TAATTTTACAAA
71544355 TCAGGGACTT
Statistics
Matches: 104, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 21 0.20
27 82 0.79
28 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAACTGGGGGTATTTTAG
Found at i:71544318 original size:54 final size:53
Alignment explanation
Indices: 71544171--71544360 Score: 199
Period size: 54 Copynumber: 3.5 Consensus size: 53
71544161 ACCGTACATA
* * * ***
71544171 GGGTATTTCGGTAATTTTAC-ACTACAAGGGTATTTC-GATAATTTTACAAACCAA
1 GGGTATTT-TGTAATTTTACAAAT-CGAGGGTATTTCAG-TAATTTTACAAACTGG
*
71544225 GGGTATTTTGTAATTTTACAAAGT-GGGGGTATTTCAGTAATTTTACAAACTGG
1 GGGTATTTTGTAATTTTACAAA-TCGAGGGTATTTCAGTAATTTTACAAACTGG
* * *
71544278 GGGTATTTTAGTACTTTTACAAATCGAGGGTATTTTAGTAATTTTACAAATTGG
1 GGGTATTTT-GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGG
*
71544332 GGATATTTTGGTAATTTTACAAATC-AGGG
1 GGGTATTTT-GTAATTTTACAAATCGAGGG
71544361 ACTTAACGAC
Statistics
Matches: 117, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
53 46 0.39
54 70 0.60
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (53 bp):
GGGTATTTTGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTGG
Found at i:71544355 original size:27 final size:27
Alignment explanation
Indices: 71544225--71544355 Score: 183
Period size: 27 Copynumber: 4.9 Consensus size: 27
71544215 TACAAACCAA
*
71544225 GGGTATTTT-GTAATTTTACAAAGTGG
1 GGGTATTTTAGTAATTTTACAAATTGG
* *
71544251 GGGTATTTCAGTAATTTTACAAACTGG
1 GGGTATTTTAGTAATTTTACAAATTGG
* * *
71544278 GGGTATTTTAGTACTTTTACAAATCGA
1 GGGTATTTTAGTAATTTTACAAATTGG
71544305 GGGTATTTTAGTAATTTTACAAATTGG
1 GGGTATTTTAGTAATTTTACAAATTGG
* *
71544332 GGATATTTTGGTAATTTTACAAAT
1 GGGTATTTTAGTAATTTTACAAAT
71544356 CAGGGACTTA
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 8 0.09
27 84 0.91
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAATTGG
Found at i:71544361 original size:27 final size:27
Alignment explanation
Indices: 71544170--71544357 Score: 154
Period size: 27 Copynumber: 7.0 Consensus size: 27
71544160 TACCGTACAT
** *
71544170 AGGGTATTTCGGTAATTTTAC-ACTACA
1 AGGGTATTTTAGTAATTTTACAAAT-CA
* *
71544197 AGGGTA-TTTCGATAATTTTACAAACCA
1 AGGGTATTTTAG-TAATTTTACAAATCA
*
71544224 AGGGTATTTT-GTAATTTTACAAAGT-G
1 AGGGTATTTTAGTAATTTTACAAA-TCA
* * *
71544250 GGGGTATTTCAGTAATTTTACAAA-CTG
1 AGGGTATTTTAGTAATTTTACAAATC-A
* * *
71544277 GGGGTATTTTAGTACTTTTACAAATCG
1 AGGGTATTTTAGTAATTTTACAAATCA
*
71544304 AGGGTATTTTAGTAATTTTACAAAT-T
1 AGGGTATTTTAGTAATTTTACAAATCA
* *
71544330 GGGGATATTTTGGTAATTTTACAAATCA
1 AGGG-TATTTTAGTAATTTTACAAATCA
71544358 GGGACTTAAC
Statistics
Matches: 135, Mismatches: 16, Indels: 19
0.79 0.09 0.11
Matches are distributed among these distances:
26 26 0.19
27 104 0.77
28 5 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAATCA
Found at i:71547781 original size:2 final size:2
Alignment explanation
Indices: 71547764--71547821 Score: 80
Period size: 2 Copynumber: 28.5 Consensus size: 2
71547754 TTGTGAATTG
* *
71547764 TA TA AA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
71547807 TG TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
71547822 GTGACATTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
2 47 0.96
3 2 0.04
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:71548251 original size:57 final size:57
Alignment explanation
Indices: 71548190--71548310 Score: 138
Period size: 57 Copynumber: 2.1 Consensus size: 57
71548180 ACCCCGAACG
* *
71548190 GGTAATCCAGA-TCAAGCTCT-TTAGAGTATATGTCATAAAAAGGATTTAGCCTAGACC
1 GGTAATCCAGACT-AAGCTCTATT-GAATATATATCATAAAAAGGATTTAGCCTAGACC
* * * * * *
71548247 GGTAATCCTGACTAAGCTCTATTGAATATATATTATAGACAGGATTTAGCCTGGACT
1 GGTAATCCAGACTAAGCTCTATTGAATATATATCATAAAAAGGATTTAGCCTAGACC
71548304 GGTAATC
1 GGTAATC
71548311 TTGTTGTCTA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
57 51 0.94
58 3 0.06
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (57 bp):
GGTAATCCAGACTAAGCTCTATTGAATATATATCATAAAAAGGATTTAGCCTAGACC
Found at i:71549014 original size:23 final size:23
Alignment explanation
Indices: 71548984--71549030 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
71548974 TTATTAAGAA
*
71548984 TTTTATGCTTACTTAGTTTTATT
1 TTTTATGCTTACTTAGTTTAATT
71549007 TTTTATGCTTACTTAGTTTAATT
1 TTTTATGCTTACTTAGTTTAATT
71549030 T
1 T
71549031 CCCTATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.19, C:0.09, G:0.09, T:0.64
Consensus pattern (23 bp):
TTTTATGCTTACTTAGTTTAATT
Found at i:71556012 original size:40 final size:40
Alignment explanation
Indices: 71555941--71556103 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
71555931 CCGGATTTAA
*
71555941 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAGC
* * *
71555980 CCAGATATAGTAACTCGCACCAATGCCTTCGGGA-ATTATC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACA-TAGC
* * *
71556020 CCGGATATAGTAGCTCGTACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
* * * *
71556060 CCGGATGTAATAACTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
71556100 CCGG
1 CCGG
71556104 TTATCATCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 17 0.16
40 88 0.83
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGC
Found at i:71556074 original size:80 final size:79
Alignment explanation
Indices: 71555941--71556103 Score: 213
Period size: 80 Copynumber: 2.1 Consensus size: 79
71555931 CCGGATTTAA
* *
71555941 CCGGATATAGCTACTCGCTCAATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATGC
1 CCGGATATAGCTACTCGCTCAATGCCTTCGGGACATAGCCCAGATATAATAACTCGCACAAATGC
*
71556006 CTTCGGGAATTATC
66 CTTCGGGAATTAGC
* * * *
71556020 CCGGATATAG-TAGCTCG-TACAAATGCCTTCGGGACTTAGCCCGGATGTAATAACTTGCACAAA
1 CCGGATATAGCTA-CTCGCT-C-AATGCCTTCGGGACATAGCCCAGATATAATAACTCGCACAAA
*
71556083 TGCCTTCGGGACTTAGC
63 TGCCTTCGGGAATTAGC
71556100 CCGG
1 CCGG
71556104 TTATCATCCG
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 3 0.04
79 15 0.21
80 55 0.75
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CCGGATATAGCTACTCGCTCAATGCCTTCGGGACATAGCCCAGATATAATAACTCGCACAAATGC
CTTCGGGAATTAGC
Found at i:71559674 original size:29 final size:29
Alignment explanation
Indices: 71559607--71559682 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
71559597 ACCGGTATAT
* *
71559607 AGTACCTGATAACTATAACACTGGCACAT
1 AGTACCTGATAAATATAACACTGGCACAA
** * *
71559636 AGGGCTTGATAAATATAACACTGGTACAA
1 AGTACCTGATAAATATAACACTGGCACAA
*
71559665 ATTACCTGATAAATATAA
1 AGTACCTGATAAATATAA
71559683 TCACAAGCAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.26
Consensus pattern (29 bp):
AGTACCTGATAAATATAACACTGGCACAA
Found at i:71564368 original size:34 final size:34
Alignment explanation
Indices: 71564325--71564400 Score: 134
Period size: 34 Copynumber: 2.2 Consensus size: 34
71564315 TTGCTCTGTT
* *
71564325 TTTGTTATATGAAAATAGACTCATTAAGCTCTAA
1 TTTGATATATAAAAATAGACTCATTAAGCTCTAA
71564359 TTTGATATATAAAAATAGACTCATTAAGCTCTAA
1 TTTGATATATAAAAATAGACTCATTAAGCTCTAA
71564393 TTTGATAT
1 TTTGATAT
71564401 CTCATTTAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (34 bp):
TTTGATATATAAAAATAGACTCATTAAGCTCTAA
Found at i:71567743 original size:40 final size:40
Alignment explanation
Indices: 71567688--71567897 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
71567678 AACATTGGAA
71567688 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
71567728 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
71567768 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
71567808 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
71567847 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
71567888 CTATATCCGG
1 ATATATCCGG
71567898 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:71575877 original size:40 final size:40
Alignment explanation
Indices: 71575822--71576031 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
71575812 AACATTGGAA
71575822 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
71575862 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
71575902 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
71575942 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
71575981 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
71576022 CTATATCCGG
1 ATATATCCGG
71576032 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:71583678 original size:40 final size:40
Alignment explanation
Indices: 71583623--71583832 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
71583613 AACATTGGAA
71583623 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
71583663 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
71583703 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
71583743 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
71583782 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
71583823 CTATATCCGG
1 ATATATCCGG
71583833 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:71587658 original size:54 final size:52
Alignment explanation
Indices: 71587583--71587888 Score: 225
Period size: 54 Copynumber: 5.7 Consensus size: 52
71587573 AGAATTACTG
* * * * *
71587583 AATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATTAGCAAAATTAATAA
1 AATACCCTGA-TTTATAAAATTACCGAAATACCCTCGATTTGTAAAATT-ATAA
* * * ** *
71587637 AATACTCCTGATTTGTGAAATTACCGAAATACCCTCAACCTGTAAAATTATTGA
1 AATAC-CCTGATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTA-TAA
* * *
71587691 AATACCCTCGACTTGTAAAATTACCGAAATACCATCGATTTGTAAAATTATCAA
1 AATACCCT-GATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTAT-AA
* * * *
71587745 AATACCCTTGAGTTAAAAAATTACCGAAATACCCTTGATTTGGAAAATTATAGA
1 AATACCC-TGATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTATA-A
* * ** * ** *
71587799 AATACTCCTAATTTACAAAATTACAAAAATACCCTTGACTTTCAAAAATTACAGA
1 AATAC-CCTGATTTATAAAATTACCGAAATACCCTCGA-TTTGTAAAATTATA-A
* * ** *
71587854 AATACCATTAGTTTGCAAAATTATCGAAATACCCT
1 AATACCCTGA-TTTATAAAATTACCGAAATACCCT
71587889 TGGGTTGTAG
Statistics
Matches: 205, Mismatches: 38, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
53 6 0.03
54 154 0.75
55 45 0.22
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.30
Consensus pattern (52 bp):
AATACCCTGATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTATAA
Found at i:71587780 original size:27 final size:27
Alignment explanation
Indices: 71587575--71587890 Score: 178
Period size: 27 Copynumber: 11.7 Consensus size: 27
71587565 TGTAAGATAG
*
71587575 AATTACTG-AATACCCTT-AGTTT-ACAA
1 AATTACCGAAATACCCTTGA-TTTGA-AA
* * * *
71587601 AATTACCAAAATACCCTCGATTAGCAA
1 AATTACCGAAATACCCTTGATTTGAAA
*** **
71587628 AATTAATAAAATACTCC-TGATTTGTGA
1 AATTACCGAAATAC-CCTTGATTTGAAA
** ** *
71587655 AATTACCGAAATACCCTCAACCTGTAA
1 AATTACCGAAATACCCTTGATTTGAAA
** * * *
71587682 AATTATTGAAATACCCTCGACTTGTAA
1 AATTACCGAAATACCCTTGATTTGAAA
* * *
71587709 AATTACCGAAATACCATCGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGAAA
* * * *
71587736 AATTATCAAAATACCCTTGAGTTAAAA
1 AATTACCGAAATACCCTTGATTTGAAA
*
71587763 AATTACCGAAATACCCTTGATTTGGAA
1 AATTACCGAAATACCCTTGATTTGAAA
** *
71587790 AATTATAGAAATACTCC-TAATTT-ACAA
1 AATTACCGAAATAC-CCTTGATTTGA-AA
** *
71587817 AATTACAAAAATACCCTTGACTTTCAAA
1 AATTACCGAAATACCCTTGA-TTTGAAA
* * *
71587845 AATTACAGAAATACCATT-AGTTTGCAA
1 AATTACCGAAATACCCTTGA-TTTGAAA
*
71587872 AATTATCGAAATACCCTTG
1 AATTACCGAAATACCCTTG
71587891 GGTTGTAGAT
Statistics
Matches: 225, Mismatches: 54, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
26 10 0.04
27 188 0.84
28 26 0.12
29 1 0.00
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTGAAA
Found at i:71587819 original size:81 final size:80
Alignment explanation
Indices: 71587583--71587885 Score: 245
Period size: 81 Copynumber: 3.7 Consensus size: 80
71587573 AGAATTACTG
* * *
71587583 AATACCCTT-AGTTTACAAAATTACCAAAATACCCTCGATTAGCAAAATTAATA-AAATACTCCT
1 AATACCCTTGAG-TTAAAAAATTACCGAAATACCCTCGATTTGCAAAATT-ATAGAAATACTCCT
* *
71587646 GATTTGTGAAATTACCGA
64 GATTTGTAAAATTA-CAA
** ** ** ** * * ** *
71587664 AATACCCTCAACCTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCGAAATAC-CATCG
1 AATACCCTTGAGTTAAAAAATTACCGAAATACCCTCGATTTGCAAAATTATAGAAATACTCCT-G
71587728 ATTTGTAAAATTATCAA
65 ATTTGTAAAATTA-CAA
* * *
71587745 AATACCCTTGAGTTAAAAAATTACCGAAATACCCTTGATTTGGAAAATTATAGAAATACTCCTAA
1 AATACCCTTGAGTTAAAAAATTACCGAAATACCCTCGATTTGCAAAATTATAGAAATACTCCTGA
**
71587810 TTTACAAAATTACAAA
66 TTTGTAAAATTAC-AA
* * * * * *
71587826 AATACCCTTGACTTTCAAAAATTACAGAAATACCAT-TAGTTTGCAAAATTATCGAAATAC
1 AATACCCTTGA-GTTAAAAAATTACCGAAATACCCTCGA-TTTGCAAAATTATAGAAATAC
71587886 CCTTGGGTTG
Statistics
Matches: 174, Mismatches: 41, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
80 4 0.02
81 128 0.74
82 42 0.24
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.30
Consensus pattern (80 bp):
AATACCCTTGAGTTAAAAAATTACCGAAATACCCTCGATTTGCAAAATTATAGAAATACTCCTGA
TTTGTAAAATTACAA
Found at i:71588268 original size:41 final size:41
Alignment explanation
Indices: 71588152--71588274 Score: 158
Period size: 41 Copynumber: 3.0 Consensus size: 41
71588142 AAAAGGAAGA
* ** *
71588152 AATTGAGGATCGCATGGTCGCTTGACGACCATGGACCCACC
1 AATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACC
* * *
71588193 GATTGAGGATCGCATGGTTGCTTGACG-GTCGTGGATTCACC
1 AATTGAGGATCGCATGGTTGCTTGACGACT-GTGGATCCACC
*
71588234 AATTAAGGATCGCATGGTTGCTTGACGACTGTGGATCCACC
1 AATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACC
71588275 GGTGGCTTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 68 0.99
42 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (41 bp):
AATTGAGGATCGCATGGTTGCTTGACGACTGTGGATCCACC
Found at i:71588469 original size:22 final size:22
Alignment explanation
Indices: 71588417--71588481 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
71588407 GCCAATTATT
*
71588417 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
71588439 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
71588461 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
71588482 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:71588726 original size:22 final size:22
Alignment explanation
Indices: 71588701--71588745 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
71588691 GGCTATGTGT
*
71588701 TGTCCTGTTTACGGCGTTGAGC
1 TGTCCTGTTTACAGCGTTGAGC
*
71588723 TGTCCTGTTTATAGCGTTGAGC
1 TGTCCTGTTTACAGCGTTGAGC
71588745 T
1 T
71588746 ATCTTGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.11, C:0.20, G:0.29, T:0.40
Consensus pattern (22 bp):
TGTCCTGTTTACAGCGTTGAGC
Found at i:71588860 original size:21 final size:22
Alignment explanation
Indices: 71588819--71588865 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
71588809 TATCCACACA
71588819 TGGTGTGCTGGTTGGTATGGG-
1 TGGTGTGCTGGTTGGTATGGGC
*
71588840 TGGTGTGTTGGTTGG-ACTGGGC
1 TGGTGTGCTGGTTGGTA-TGGGC
71588862 TGGT
1 TGGT
71588866 AATCTGTCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 18 0.78
22 4 0.17
ACGTcount: A:0.04, C:0.06, G:0.51, T:0.38
Consensus pattern (22 bp):
TGGTGTGCTGGTTGGTATGGGC
Found at i:71602377 original size:46 final size:44
Alignment explanation
Indices: 71602287--71602414 Score: 136
Period size: 46 Copynumber: 2.9 Consensus size: 44
71602277 CATCAACATT
* *
71602287 GAGACGATGCTAGTGTAAGACATGTCT---ACATGCTTCGGCCAC
1 GAGACG-TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC
* *
71602329 GAGACGTAAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTAC
1 GAGACGT--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC
* *
71602375 GAGATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGACGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
71602415 TGCACAGATA
Statistics
Matches: 72, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.01
42 6 0.08
43 17 0.24
44 11 0.15
45 13 0.18
46 24 0.33
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
GAGACGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC
Found at i:71606074 original size:20 final size:20
Alignment explanation
Indices: 71606049--71606094 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
71606039 ATTGGGCCTT
71606049 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
71606069 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
71606088 GCCCATA
1 GCCCATA
71606095 ACAAAACAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:71606103 original size:19 final size:20
Alignment explanation
Indices: 71606061--71606103 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
71606051 CCATATTAAC
** *
71606061 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
71606081 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
71606100 ACAG
1 ACAG
71606104 CCTCATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:71607545 original size:13 final size:13
Alignment explanation
Indices: 71607508--71607555 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
71607498 TGTTTTAGCT
71607508 AGAGAAGAA-AAGA
1 AGAGAAGAAGAA-A
*
71607521 AGGAGAAAAAGAAA
1 A-GAGAAGAAGAAA
*
71607535 ATAGAAGAAGAAA
1 AGAGAAGAAGAAA
71607548 AGAGAAGA
1 AGAGAAGA
71607556 GAAGGAAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 18 0.62
14 9 0.31
15 2 0.07
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (13 bp):
AGAGAAGAAGAAA
Found at i:71607550 original size:18 final size:19
Alignment explanation
Indices: 71607518--71607565 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
71607508 AGAGAAGAAA
*
71607518 AGAAGG-AGAAAAAGAAAAT
1 AGAAGGAAG-AAAAGAAAAG
*
71607537 AGAA-GAAGAAAAGAGAAG
1 AGAAGGAAGAAAAGAAAAG
71607555 AGAAGGAAGAA
1 AGAAGGAAGAA
71607566 TTCGGCACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (19 bp):
AGAAGGAAGAAAAGAAAAG
Found at i:71607563 original size:19 final size:19
Alignment explanation
Indices: 71607513--71607565 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
71607503 TAGCTAGAGA
71607513 AGAAAAGAAGG-AGAAAA-
1 AGAAAAGAAGGAAGAAAAG
71607530 AGAAAATAGAA-GAAGAAAAG
1 AG-AAA-AGAAGGAAGAAAAG
*
71607550 AGAAGAGAAGGAAGAA
1 AGAAAAGAAGGAAGAA
71607566 TTCGGCACTC
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
17 2 0.07
18 8 0.27
19 18 0.60
20 2 0.07
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (19 bp):
AGAAAAGAAGGAAGAAAAG
Found at i:71608897 original size:34 final size:35
Alignment explanation
Indices: 71608839--71608910 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
71608829 CGTATCCTAG
*
71608839 CTACAGTCTCAGTCTTCTAAAGTTTTCAAT-TTTCC
1 CTACAGTCTCAGTCTTCTAAAG-TTTCAATATTACC
* *
71608874 CTACTGTCTCAGT-TTCTATAGTTTCAATATTACC
1 CTACAGTCTCAGTCTTCTAAAGTTTCAATATTACC
71608908 CTA
1 CTA
71608911 ACTACAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 7 0.21
34 14 0.42
35 12 0.36
ACGTcount: A:0.24, C:0.25, G:0.08, T:0.43
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTCAATATTACC
Found at i:71617273 original size:45 final size:50
Alignment explanation
Indices: 71617201--71617326 Score: 144
Period size: 45 Copynumber: 2.7 Consensus size: 50
71617191 GACGTAAGCC
*
71617201 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTAT-GAGATG-T-G-TT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATAGAGATGCTAGATT
* *
71617245 AGTGTAAGACCATGTCT-GGAAATGGCATCGG-TATAGATATGCTAGAACTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATAGAGATGCTAG-A-TT
71617295 -GTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
71617327 ACCTGACCCC
Statistics
Matches: 68, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
44 17 0.25
45 18 0.26
46 1 0.01
47 1 0.01
49 16 0.24
50 15 0.22
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATAGAGATGCTAGATT
Found at i:71634852 original size:24 final size:25
Alignment explanation
Indices: 71634815--71634866 Score: 88
Period size: 24 Copynumber: 2.1 Consensus size: 25
71634805 AATGAAACAT
71634815 AAAAAATTAAAAGACACAGTAAGACG
1 AAAAAATT-AAAGACACAGTAAGACG
71634841 AAAAAATT-AAGACACAGTAAGACG
1 AAAAAATTAAAGACACAGTAAGACG
71634865 AA
1 AA
71634867 CTTACCGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 18 0.69
26 8 0.31
ACGTcount: A:0.62, C:0.12, G:0.15, T:0.12
Consensus pattern (25 bp):
AAAAAATTAAAGACACAGTAAGACG
Found at i:71643159 original size:2 final size:2
Alignment explanation
Indices: 71643152--71643181 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
71643142 TTGAATACAA
71643152 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71643182 TACATAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71643673 original size:18 final size:17
Alignment explanation
Indices: 71643646--71643680 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
71643636 CCTATTTATC
*
71643646 TAATTAAATATTTAATA
1 TAATTAAATATGTAATA
71643663 TAATATAAATATGTAATA
1 TAAT-TAAATATGTAATA
71643681 ATTATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
TAATTAAATATGTAATA
Found at i:71643863 original size:19 final size:19
Alignment explanation
Indices: 71643810--71643864 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
71643800 TTTAACATAC
71643810 ATAATAATATATATAATAA
1 ATAATAATATATATAATAA
*
71643829 AT-A-AATGT-T-T-AT--
1 ATAATAATATATATAATAA
71643841 ATAATAATATATATAATAA
1 ATAATAATATATATAATAA
71643860 ATAAT
1 ATAAT
71643865 TAATTATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 14
0.63 0.05 0.33
Matches are distributed among these distances:
12 2 0.07
13 1 0.04
14 6 0.22
15 2 0.07
16 2 0.07
17 6 0.22
18 1 0.04
19 7 0.26
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
ATAATAATATATATAATAA
Found at i:71643880 original size:16 final size:16
Alignment explanation
Indices: 71643861--71643907 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
71643851 ATATAATAAA
*
71643861 TAATTAATTATCTAAT
1 TAATTATTTATCTAAT
* *
71643877 TAATTTTTTATTTAAT
1 TAATTATTTATCTAAT
*
71643893 TAAATATTTATCTAA
1 TAATTATTTATCTAA
71643908 ACAGAAAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.55
Consensus pattern (16 bp):
TAATTATTTATCTAAT
Found at i:71655724 original size:48 final size:49
Alignment explanation
Indices: 71655664--71655763 Score: 193
Period size: 49 Copynumber: 2.1 Consensus size: 49
71655654 TCTTTATTCT
71655664 TTCCATGCTTATA-TTTTGTACATAAACCCTTATTGAGTTTATTTTTCA
1 TTCCATGCTTATATTTTTGTACATAAACCCTTATTGAGTTTATTTTTCA
71655712 TTCCATGCTTATATTTTTGTACATAAACCCTTATTGAGTTTATTTTTCA
1 TTCCATGCTTATATTTTTGTACATAAACCCTTATTGAGTTTATTTTTCA
71655761 TTC
1 TTC
71655764 TTTCAAGTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 13 0.25
49 38 0.75
ACGTcount: A:0.24, C:0.17, G:0.08, T:0.51
Consensus pattern (49 bp):
TTCCATGCTTATATTTTTGTACATAAACCCTTATTGAGTTTATTTTTCA
Found at i:71657071 original size:11 final size:11
Alignment explanation
Indices: 71657041--71657074 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
71657031 TAATCAAAAA
71657041 ACACCTAAACTT
1 ACACC-AAACTT
71657053 AC-CCAAACTT
1 ACACCAAACTT
71657063 ACACCAAACTT
1 ACACCAAACTT
71657074 A
1 A
71657075 AAACACATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 8 0.38
11 11 0.52
12 2 0.10
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (11 bp):
ACACCAAACTT
Found at i:71658758 original size:26 final size:25
Alignment explanation
Indices: 71658714--71658762 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
71658704 AAGAAGTGCC
*
71658714 TTTGTGGCAATTTTCGTAAGAAAACA
1 TTTGTGGCAATTCTCGTAA-AAAACA
71658740 TTTGTGGCAA-TCTCTGTAAAAAA
1 TTTGTGGCAATTCTC-GTAAAAAA
71658763 GAAAGCCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (25 bp):
TTTGTGGCAATTCTCGTAAAAAACA
Found at i:71658796 original size:60 final size:60
Alignment explanation
Indices: 71658731--71658874 Score: 155
Period size: 60 Copynumber: 2.4 Consensus size: 60
71658721 CAATTTTCGT
* * *** *
71658731 AAGAAAACATTTGTGGCAATCTCTGTAAAAAAGAAAGCCTTTT-TGTTTATCTCTGTTAAA
1 AAGAAAGCCTTTGTGGCAATCTCTGTAAAAAAGAAAG-CTTTTATGGCGATCTCTATTAAA
* ** * * *
71658791 AAGAAAGCCTTTGTAGTGATCTATGTTAAAAAGAAAGCTTTTATGGCGATTTCTATTAAA
1 AAGAAAGCCTTTGTGGCAATCTCTGTAAAAAAGAAAGCTTTTATGGCGATCTCTATTAAA
*
71658851 AAGGAAGCCTTTGTGGCAATCTCT
1 AAGAAAGCCTTTGTGGCAATCTCT
71658875 ATCAAAGGAT
Statistics
Matches: 66, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
59 5 0.08
60 61 0.92
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (60 bp):
AAGAAAGCCTTTGTGGCAATCTCTGTAAAAAAGAAAGCTTTTATGGCGATCTCTATTAAA
Found at i:71658876 original size:30 final size:30
Alignment explanation
Indices: 71658731--71658874 Score: 135
Period size: 30 Copynumber: 4.8 Consensus size: 30
71658721 CAATTTTCGT
* * *
71658731 AAGAAAACATTTGTGGCAATCTCTGTAAAA
1 AAGAAAGCCTTTGTGGCAATCTCTGTTAAA
* ***
71658761 AAGAAAGCCTTTTTGTTTATCTCTGTTAAA
1 AAGAAAGCCTTTGTGGCAATCTCTGTTAAA
* ** *
71658791 AAGAAAGCCTTTGTAGTGATCTATGTTAAA
1 AAGAAAGCCTTTGTGGCAATCTCTGTTAAA
* * * * *
71658821 AAGAAAGCTTTTATGGCGATTTCTATTAAA
1 AAGAAAGCCTTTGTGGCAATCTCTGTTAAA
*
71658851 AAGGAAGCCTTTGTGGCAATCTCT
1 AAGAAAGCCTTTGTGGCAATCTCT
71658875 ATCAAAGGAT
Statistics
Matches: 90, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 90 1.00
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (30 bp):
AAGAAAGCCTTTGTGGCAATCTCTGTTAAA
Found at i:71667369 original size:19 final size:19
Alignment explanation
Indices: 71667345--71667407 Score: 85
Period size: 19 Copynumber: 3.4 Consensus size: 19
71667335 TACTCTTCTG
*
71667345 AGTTAATTGAGTTCATTTT
1 AGTTAATTGAGTTCATCTT
71667364 AGTTAATTGAGTTCATCTT
1 AGTTAATTGAGTTCATCTT
*
71667383 AGTTAA-T-AATTCATCTT
1 AGTTAATTGAGTTCATCTT
71667400 AGATTAAT
1 AG-TTAAT
71667408 AAATAAGTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
17 11 0.28
18 5 0.12
19 24 0.60
ACGTcount: A:0.32, C:0.08, G:0.13, T:0.48
Consensus pattern (19 bp):
AGTTAATTGAGTTCATCTT
Found at i:71670780 original size:40 final size:40
Alignment explanation
Indices: 71670725--71670869 Score: 254
Period size: 40 Copynumber: 3.6 Consensus size: 40
71670715 CGGATGATAA
71670725 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
71670765 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* **
71670805 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
71670845 CCGGGCTAAGTCTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
71670870 AGTGAGTAGC
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:71670883 original size:40 final size:40
Alignment explanation
Indices: 71670725--71670901 Score: 250
Period size: 40 Copynumber: 4.5 Consensus size: 40
71670715 CGGATGATAA
*
71670725 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
71670765 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
71670805 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
71670845 CCGGGCTAAGTCTCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
71670885 CC-GGCTAAACCCCGAAG
1 CCGGGCTAAGTCCCGAAG
71670902 CTACTTGGTT
Statistics
Matches: 125, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.11
40 111 0.89
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:71673603 original size:39 final size:40
Alignment explanation
Indices: 71673549--71673725 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 40
71673539 GAGTCACGTA
* *
71673549 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAACAACTAGCACAATTG
* ** *
71673588 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAATTG
*
71673628 CCTTC-GGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAACAACTAGCAC-AATTG
* * *
71673667 CCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAA-CAACTAGCACAATTG
* *
71673707 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
71673726 GTATCATTCA
Statistics
Matches: 118, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 46 0.39
40 70 0.59
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAACAACTAGCACAATTG
Found at i:71673709 original size:79 final size:78
Alignment explanation
Indices: 71673559--71673713 Score: 195
Period size: 79 Copynumber: 2.0 Consensus size: 78
71673549 CCTTCGGGAT
* * * *
71673559 TTAACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACA
1 TTAACCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACA
*
71673624 ATTGCCTTCGGTC
66 AATGCCTTCGGTC
** * *
71673637 TTAACCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCA
1 TTAA-CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCA
*
71673701 TAAATGCCTTCGG
64 CAAATGCCTTCGG
71673714 GACTTAGCCC
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
78 4 0.06
79 59 0.91
80 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (78 bp):
TTAACCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACA
AATGCCTTCGGTC
Found at i:71681690 original size:40 final size:40
Alignment explanation
Indices: 71681616--71681793 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
71681606 GAGTCACGTA
** *
71681616 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
71681655 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
71681695 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
71681735 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
71681775 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
71681794 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:71686793 original size:18 final size:17
Alignment explanation
Indices: 71686740--71686794 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
71686730 TGAATAAATT
71686740 ACTCATCTTAGTTAATTGA
1 ACTCATCTTAGTTAA-T-A
**
71686759 GTTCATCTTAGTTAATA
1 ACTCATCTTAGTTAATA
71686776 ACTCATCTTAGATTAATA
1 ACTCATCTTAG-TTAATA
71686794 A
1 A
71686795 ATGAGTTGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 10 0.32
18 8 0.26
19 13 0.42
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.42
Consensus pattern (17 bp):
ACTCATCTTAGTTAATA
Found at i:71693040 original size:47 final size:47
Alignment explanation
Indices: 71692969--71693142 Score: 249
Period size: 47 Copynumber: 3.7 Consensus size: 47
71692959 CCCTTCGGGA
* * * * *
71692969 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
71693016 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
71693063 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
71693110 CTTATCTCATATTTATACACATTCACATTCATC
1 CTTATCACATA--TATACACTTTCACATTCATC
71693143 GCGTAGAATC
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
47 96 0.83
49 19 0.17
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:71693047 original size:25 final size:25
Alignment explanation
Indices: 71693019--71693097 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
71693009 ACTCGGCCCT
71693019 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** *** *
71693044 ATCACAT-TGGCCA-TTAGGCCTT-
1 ATCACATATATACACTTTCACATTC
71693066 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
71693091 ATCACAT
1 ATCACAT
71693098 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:71704032 original size:41 final size:40
Alignment explanation
Indices: 71703987--71704110 Score: 142
Period size: 41 Copynumber: 3.0 Consensus size: 40
71703977 GTACAGGTTA
** *
71703987 TACTTTGGCTTCTCCAATAATGCACTTATGTGCCAGTATAT
1 TACTTTGG-TTCTCTGATGATGCACTTATGTGCCAGTATAT
* *
71704028 TACTTTGGTTCATCTGGTGATGCACTTATGTGCTAGTATAT
1 TACTTTGGTTC-TCTGATGATGCACTTATGTGCCAGTATAT
* *
71704069 TA-TTCTGGTTTTCTTGATGATGCACTTATGTGCCAATATAT
1 TACTT-TGGTTCTC-TGATGATGCACTTATGTGCCAGTATAT
71704110 T
1 T
71704111 TGCTTCGATT
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
40 7 0.10
41 64 0.90
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.44
Consensus pattern (40 bp):
TACTTTGGTTCTCTGATGATGCACTTATGTGCCAGTATAT
Found at i:71709144 original size:25 final size:25
Alignment explanation
Indices: 71709089--71709148 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
71709079 ACCCACAATA
* *
71709089 CGTGTGAGCAATTACAGTTACAGCT
1 CGTGTGAGCAATAACAGTTACAACT
*
71709114 CGTGTGAGCAATAATAGTTACAACT
1 CGTGTGAGCAATAACAGTTACAACT
**
71709139 TTTGTGAGCA
1 CGTGTGAGCA
71709149 TCGTTCCCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (25 bp):
CGTGTGAGCAATAACAGTTACAACT
Found at i:71709250 original size:13 final size:13
Alignment explanation
Indices: 71709206--71709361 Score: 70
Period size: 13 Copynumber: 12.0 Consensus size: 13
71709196 AATGTATAAA
* *
71709206 ATGAAATAGATAT
1 ATGAAATGGTTAT
* * *
71709219 AAGAAAAGGTTAA
1 ATGAAATGGTTAT
* *
71709232 ACGAAATGTTTAT
1 ATGAAATGGTTAT
*
71709245 ATGAAATGGTTAC
1 ATGAAATGGTTAT
*
71709258 CTGAAATGGTTAT
1 ATGAAATGGTTAT
71709271 AT-AAATAGGTTAT
1 ATGAAAT-GGTTAT
* * *
71709284 -GGAAATAGATAT
1 ATGAAATGGTTAT
*
71709296 ATGTAAA-GATT-T
1 ATG-AAATGGTTAT
71709308 GATG-AATCGGTTAT
1 -ATGAAAT-GGTTAT
*
71709322 ATAGAAATAGTTAT
1 AT-GAAATGGTTAT
* * *
71709336 ATGAAGTGTTTTT
1 ATGAAATGGTTAT
*
71709349 ATGAAATGTTTAT
1 ATGAAATGGTTAT
71709362 TTGGATATAG
Statistics
Matches: 103, Mismatches: 30, Indels: 20
0.67 0.20 0.13
Matches are distributed among these distances:
11 2 0.02
12 9 0.09
13 77 0.75
14 12 0.12
15 3 0.03
ACGTcount: A:0.42, C:0.03, G:0.20, T:0.36
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:71713519 original size:20 final size:20
Alignment explanation
Indices: 71713494--71713537 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
71713484 ATTTTGATAA
71713494 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
71713514 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
71713534 ACAT
1 ACAT
71713538 TAGGTGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:71713709 original size:23 final size:23
Alignment explanation
Indices: 71713590--71713715 Score: 157
Period size: 23 Copynumber: 5.4 Consensus size: 23
71713580 GAGGAAGTGC
71713590 AAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
71713612 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
71713635 TAAAGGGCTTATGCCCCAGTGAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
71713658 CAAAAGGGCTTATGCCCCAGTTACA
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
71713683 AAAAGGG-TTTTGCCCCAGTTACT
1 AAAAGGGCTTATGCCCCAGTTA-T
71713706 AAAAGAGGCT
1 AAAAG-GGCT
71713716 AGGCCTCCAG
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
22 12 0.13
23 50 0.54
24 29 0.32
25 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:71713710 original size:47 final size:46
Alignment explanation
Indices: 71713590--71713715 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 46
71713580 GAGGAAGTGC
* *
71713590 AAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAA
* *
71713635 TAAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTATGCCCCAGTTACA
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTA-A
*
71713683 AAAAGGG-TTTTGCCCCAGTTACTAAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
71713716 AGGCCTCCAG
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
45 12 0.17
46 8 0.12
47 38 0.55
48 11 0.16
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAA
Found at i:71713958 original size:31 final size:31
Alignment explanation
Indices: 71713923--71713986 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
71713913 CGTTTACAGT
71713923 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
71713954 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71713985 AA
1 AA
71713987 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:71717728 original size:99 final size:92
Alignment explanation
Indices: 71717597--71717827 Score: 270
Period size: 99 Copynumber: 2.4 Consensus size: 92
71717587 TCCATCAAGT
*
71717597 CAATGCCATGTTCCAGACATGGTCTTACACTGACTATCGAAATCG-AGGTCGACTCCATGTCCCA
1 CAATGCCATGTCCCAGACATGGTCTTACACTGAC-A-C-AAATCGTA-GTCGA-TCCATGTCCCA
* * *
71717661 GACATGGTCTTACACTAGCTCTCACATATCGATGC
61 GACAT-GCCTTACACTAGCT-T-ACATATCAAGGC
** *
71717696 CAATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGTCGATGCATGTCCCAGACAT
1 CAATGCCATGTCCCAGACATGGTCTTACACTGACACAAATCGTAGTCGATCCATGTCCCAGACAT
*
71717761 GCCTTACACTGGCTTACATATCAAGGC
66 GCCTTACACTAGCTTACATATCAAGGC
*
71717788 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACACAAAT
1 CAATGCCATGTCCCAGACATGGTCTTACACT-G-ACACAAAT
71717828 AACCTGAATG
Statistics
Matches: 118, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
90 10 0.08
91 15 0.13
92 20 0.17
93 1 0.01
94 12 0.10
95 15 0.13
96 9 0.08
97 2 0.02
98 1 0.01
99 33 0.28
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (92 bp):
CAATGCCATGTCCCAGACATGGTCTTACACTGACACAAATCGTAGTCGATCCATGTCCCAGACAT
GCCTTACACTAGCTTACATATCAAGGC
Found at i:71717802 original size:46 final size:46
Alignment explanation
Indices: 71717548--71717819 Score: 198
Period size: 46 Copynumber: 5.8 Consensus size: 46
71717538 AGGGTATAAT
* * *
71717548 GCCGATGCCATATCCCAAACATGGTCTTACACTGAC-T-CATCCATCAA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACAT--ATCAA
* * * * * *
71717595 GTCAATGCCATGTTCCAGACATGGTCTTACACTGAC-TATCGAAATCGAG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATATC-AA
* * * *
71717644 GTCGACTCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCGAT
1 GCCGA-TGCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATATC-AA
* * * *
71717694 GCCAATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATATC-AA
* *
71717740 GTCGATGCATGTCCCAGACAT-GCCTTACACTGGCTTACATATCAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATATCAA
71717785 GGCCGATGCATGTCCCAGACAT-GTCTTACACTGGC
1 -GCCGATGCATGTCCCAGACATGGTCTTACACTGGC
71717820 ACACAAATAA
Statistics
Matches: 183, Mismatches: 30, Indels: 25
0.77 0.13 0.11
Matches are distributed among these distances:
44 11 0.06
45 15 0.08
46 50 0.27
47 32 0.17
48 3 0.02
49 32 0.17
50 37 0.20
51 2 0.01
52 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATATCAA
Found at i:71724602 original size:28 final size:28
Alignment explanation
Indices: 71724570--71724638 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
71724560 GCGTAGATCA
71724570 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
71724598 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
71724626 CGATA-TACCCCTA
1 CGAAATTACCCCTA
71724639 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:71727001 original size:18 final size:17
Alignment explanation
Indices: 71726974--71727016 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
71726964 ATGAAATTTT
*
71726974 AATTAGTATTATGAGATA
1 AATTATTATTATGAGA-A
*
71726992 AATTATTATTATTAGAA
1 AATTATTATTATGAGAA
*
71727009 AAATATTA
1 AATTATTA
71727017 CTGTATGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (17 bp):
AATTATTATTATGAGAA
Found at i:71728831 original size:28 final size:28
Alignment explanation
Indices: 71728799--71728867 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
71728789 GCGTAGATCA
71728799 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
71728827 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
71728855 CGATA-TACCCCTA
1 CGAAATTACCCCTA
71728868 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:71731894 original size:29 final size:29
Alignment explanation
Indices: 71731862--71731996 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
71731852 ATACCCTTCG
** * *
71731862 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * *
71731891 AGCTTGCACACATAGTGTCATAT-TTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
71731919 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
71731948 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
71731977 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
71731997 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
28 23 0.25
29 70 0.75
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:71731947 original size:57 final size:58
Alignment explanation
Indices: 71731837--71731995 Score: 176
Period size: 57 Copynumber: 2.8 Consensus size: 58
71731827 AATTTAAGCC
* *** * * ** * *
71731837 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * *
71731895 TGCACACATAGTGTCATAT-TTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
71731952 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
71731996 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
57 45 0.54
58 38 0.46
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:71735344 original size:29 final size:29
Alignment explanation
Indices: 71735312--71735447 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
71735302 ATACCCTTCG
** * *
71735312 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
71735341 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
71735370 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
71735399 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
71735428 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
71735448 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:71735439 original size:58 final size:58
Alignment explanation
Indices: 71735287--71735446 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
71735277 AATTTAAGCC
* *** * * ** * *
71735287 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
71735345 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
71735403 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
71735447 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:71743180 original size:29 final size:29
Alignment explanation
Indices: 71743120--71743250 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
71743110 CCTTCGAGCT
** * *
71743120 CGCACACCCAGTGCCGTAT-TTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * * *
71743148 TGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
71743177 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
71743206 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
71743235 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
71743251 ATCTCGTCAC
Statistics
Matches: 90, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 14 0.16
29 76 0.84
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:71743212 original size:58 final size:57
Alignment explanation
Indices: 71743091--71743249 Score: 174
Period size: 58 Copynumber: 2.8 Consensus size: 57
71743081 AATTTAAGCC
* *** * * ** *
71743091 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATTTTCCAGCA
* * * * *
71743148 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTAT-TTTCCAGCA
*
71743206 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
71743250 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
57 36 0.43
58 47 0.57
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (57 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATTTTCCAGCA
Found at i:71746083 original size:46 final size:47
Alignment explanation
Indices: 71745906--71746122 Score: 178
Period size: 46 Copynumber: 4.6 Consensus size: 47
71745896 AAGTCGATGC
** * * * *
71745906 CATGTCCCAGACATGGTCTTACACTAACTTTCAACATCG-AGGCCGACG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATC-TCGTA-GCCAATG
* * * * *
71745954 TCGTATCCCAGACATGGTCTTACACTAGCTCTCACATATTGGT-GCCAATG
1 -CATGTCCCAGACATGGTCTTACACTGGCT-T-ACAT-CTCGTAGCCAATG
*
71746004 CCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTAGCCAATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCCAATG
* * *
71746050 CATGTACCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-GCCAATG
71746096 CATGTCCCAGACAT-GTCTTACACTGGC
1 CATGTCCCAGACATGGTCTTACACTGGC
71746123 ACACAAATAA
Statistics
Matches: 139, Mismatches: 21, Indels: 19
0.78 0.12 0.11
Matches are distributed among these distances:
44 12 0.09
45 17 0.12
46 50 0.36
49 26 0.19
50 30 0.22
51 4 0.03
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCCAATG
Found at i:71750848 original size:25 final size:25
Alignment explanation
Indices: 71750814--71750864 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
71750804 TTTCCTATTG
71750814 GTTGGAAGTAATCCCACATCGGGAA
1 GTTGGAAGTAATCCCACATCGGGAA
71750839 GTTGGAAGTAATCCCACATCGGGAA
1 GTTGGAAGTAATCCCACATCGGGAA
71750864 G
1 G
71750865 CTAACATGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.20
Consensus pattern (25 bp):
GTTGGAAGTAATCCCACATCGGGAA
Found at i:71751275 original size:27 final size:27
Alignment explanation
Indices: 71751245--71751354 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 27
71751235 ATCTCATATC
* *
71751245 TGTAGGCTAGTATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
*
71751272 TGTAGGGTAGAATTACTGAAATGTCCC-
1 TGTAGGGTAGAATTACTGAAAT-ACCCT
* * *
71751299 TGTAGGATAGAATTACTGAAATGCCCC
1 TGTAGGGTAGAATTACTGAAATACCCT
*
71751326 TGTAGGGTAGAATTACCGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
71751353 TG
1 TG
71751355 GTTTACAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
26 3 0.04
27 66 0.92
28 3 0.04
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCT
Found at i:71751314 original size:54 final size:54
Alignment explanation
Indices: 71751244--71751347 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 54
71751234 AATCTCATAT
* * * *
71751244 CTGTAGGCTAGTATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATGTCC
1 CTGTAGGATAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATGTCC
*
71751298 CTGTAGGATAGAATTACTGAAATGCCCCTGTAGGGTAGAATTACCGAAAT
1 CTGTAGGATAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAAT
71751348 ACCCTTGGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (54 bp):
CTGTAGGATAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATGTCC
Found at i:71751366 original size:27 final size:27
Alignment explanation
Indices: 71751336--71751572 Score: 133
Period size: 27 Copynumber: 8.7 Consensus size: 27
71751326 TGTAGGGTAG
* *
71751336 AATTACCGAAATACCCTTGGTTTACAA
1 AATTACCGAAATACCCTTGATTTGCAA
* * *
71751363 AATTACCAAAACATCCC-T-ATTTTGTAA
1 AATTACCGAAATA-CCCTTGA-TTTGCAA
* * * * *
71751390 AATTACCAAAACACCCCTAATTTGGAA
1 AATTACCGAAATACCCTTGATTTGCAA
** * *
71751417 AATTACTAAAATACCCTTAATTTGGAA
1 AATTACCGAAATACCCTTGATTTGCAA
* *
71751444 AATTACAGAAATACCCTTGATTTCCAA
1 AATTACCGAAATACCCTTGATTTGCAA
** *
71751471 AATTAAAGAAATACCCTTGACCTTCT-AAA
1 AATTACCGAAATACCCTTGA--TT-TGCAA
* *
71751500 AATT-CTAGAAATACCATT-AGTTTGCAA
1 AATTAC-CGAAATACCCTTGA-TTTGCAA
* * *
71751527 AATTACTGAAATACCCTTGGTTTGTAA
1 AATTACCGAAATACCCTTGATTTGCAA
* * *
71751554 ATTTACCAAAACACCCTTG
1 AATTACCGAAATACCCTTG
71751573 TAGGATGAAA
Statistics
Matches: 171, Mismatches: 28, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
26 4 0.02
27 141 0.82
28 6 0.04
29 19 0.11
30 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTGCAA
Found at i:71751394 original size:54 final size:54
Alignment explanation
Indices: 71751336--71751475 Score: 147
Period size: 54 Copynumber: 2.6 Consensus size: 54
71751326 TGTAGGGTAG
* * *
71751336 AATTACCGAAATACCCTTGGTTTACAAAATTACCAAAACATCCC-TATTTTGTAA
1 AATTACCGAAATACCCTTGATTTACAAAATTACCAAAACA-CCCTTAATTTGGAA
* * * * ** * *
71751390 AATTACCAAAACACCCCTAATTTGGAAAATTACTAAAATACCCTTAATTTGGAA
1 AATTACCGAAATACCCTTGATTTACAAAATTACCAAAACACCCTTAATTTGGAA
* *
71751444 AATTACAGAAATACCCTTGATTTCCAAAATTA
1 AATTACCGAAATACCCTTGATTTACAAAATTA
71751476 AAGAAATACC
Statistics
Matches: 67, Mismatches: 18, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
53 3 0.04
54 64 0.96
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGATTTACAAAATTACCAAAACACCCTTAATTTGGAA
Found at i:71751633 original size:27 final size:27
Alignment explanation
Indices: 71751603--71751679 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
71751593 ACCCCTAATA
*
71751603 GGTAAAAAGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
71751630 GGTAAAATGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
71751657 GGTAAAGTGACCGTAATACCCCT
1 GGTAAAATGACCGTAATGCCCCT
71751680 TCTCTCTGCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:71752328 original size:49 final size:49
Alignment explanation
Indices: 71752256--71752372 Score: 189
Period size: 49 Copynumber: 2.4 Consensus size: 49
71752246 CCGCAAATCA
* *
71752256 AGGTGTGTAGTCGTACACCCAACCTTACTTTGTGTTCAATGATGAATGT
1 AGGTGTGTAGTCGTACACCCAACCTTACTCTGTGTTCAATGATGAATGC
*
71752305 AGGTGTTTAGTCGTACACCCAACCTTACTCTGTGTTCAATGATGAATGC
1 AGGTGTGTAGTCGTACACCCAACCTTACTCTGTGTTCAATGATGAATGC
* *
71752354 AGGTGTGCAATCGTACACC
1 AGGTGTGTAGTCGTACACC
71752373 ATTCTGTAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 62 1.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (49 bp):
AGGTGTGTAGTCGTACACCCAACCTTACTCTGTGTTCAATGATGAATGC
Done.