Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 231 of 433
Found at i:71994355 original size:61 final size:60
Alignment explanation
Indices: 71994283--71994401 Score: 168
Period size: 61 Copynumber: 1.9 Consensus size: 60
71994273 TCATCCCAAA
* * *
71994283 GGCTCACATGTAACAGAGAACAATG-ACAAAGGCTTCCACATATAACGGGTTCAGCCACTAG
1 GGCTCAAATGTAACAGAGAAC--TGCACAAAAGCTTCCACATATAACAGGTTCAGCCACTAG
*
71994344 GGCTCAAATGTAATAGAGAACTGCCACAAAAGCTTCCACATATAACAGGTTCAGCCAC
1 GGCTCAAATGTAACAGAGAACTG-CACAAAAGCTTCCACATATAACAGGTTCAGCCAC
71994402 AAAGCCATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
59 2 0.04
61 50 0.96
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.18
Consensus pattern (60 bp):
GGCTCAAATGTAACAGAGAACTGCACAAAAGCTTCCACATATAACAGGTTCAGCCACTAG
Found at i:71995886 original size:40 final size:40
Alignment explanation
Indices: 71995805--71995982 Score: 250
Period size: 40 Copynumber: 4.5 Consensus size: 40
71995795 CAACCAAGTA
** * * *
71995805 CCTTCGGGGTTTAG-CCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
** * * *
71995844 CCTTCGGGACTTAGCCCGGTTATAGTATCTCGCATAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
71995884 CCTTCGGGACTTAGCCCGAAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
71995924 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
71995964 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
71995983 TTATCATCCG
Statistics
Matches: 123, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 12 0.10
40 111 0.90
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:71998952 original size:17 final size:16
Alignment explanation
Indices: 71998927--71998994 Score: 55
Period size: 17 Copynumber: 3.8 Consensus size: 16
71998917 CACTTTTAAG
71998927 CATATATCACATTACA
1 CATATATCACATTACA
*
71998943 CATATAATCACATAACATTTAA
1 CATAT-ATCACATTAC-----A
71998965 GCATATATCACATTACA
1 -CATATATCACATTACA
71998982 CATATAATCACAT
1 CATAT-ATCACAT
71998995 AACATTTAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 15
0.71 0.03 0.25
Matches are distributed among these distances:
16 10 0.24
17 17 0.40
22 10 0.24
23 5 0.12
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (16 bp):
CATATATCACATTACA
Found at i:71998964 original size:39 final size:39
Alignment explanation
Indices: 71998921--71999124 Score: 315
Period size: 39 Copynumber: 5.3 Consensus size: 39
71998911 CATTTTCACT
*
71998921 TTTAAGCATATATCACATTACACATATAATCACATAACA
1 TTTAAGCATATATCACATTACTCATATAATCACATAACA
*
71998960 TTTAAGCATATATCACATTACACATATAATCACATAACA
1 TTTAAGCATATATCACATTACTCATATAATCACATAACA
71998999 TTTAAGCATATATCACAATT-CTCATATAATCACATAACA
1 TTTAAGCATATATCAC-ATTACTCATATAATCACATAACA
* *
71999038 TTCAAGCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACATTACTCATATAATCACATAACA
* * *
71999077 TTCAA--ACATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACATTACTCATATAATCACATAACA
71999114 TTTAAGCATAT
1 TTTAAGCATAT
71999125 CGCAATACTC
Statistics
Matches: 155, Mismatches: 6, Indels: 8
0.92 0.04 0.05
Matches are distributed among these distances:
37 35 0.23
38 2 0.01
39 115 0.74
40 3 0.02
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACATTACTCATATAATCACATAACA
Found at i:72000068 original size:19 final size:20
Alignment explanation
Indices: 72000017--72000072 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
72000007 TTATAAAGTC
*
72000017 GTAAGAAAATTATAAAAAAT
1 GTAACAAAATTATAAAAAAT
* **
72000037 ATAACAAAA-TATAAAATTT
1 GTAACAAAATTATAAAAAAT
72000056 GTAA-AAAATTATAAAAA
1 GTAACAAAATTATAAAAA
72000073 TTATCATACT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
18 4 0.14
19 18 0.62
20 7 0.24
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (20 bp):
GTAACAAAATTATAAAAAAT
Found at i:72000073 original size:9 final size:9
Alignment explanation
Indices: 72000022--72000076 Score: 56
Period size: 9 Copynumber: 5.9 Consensus size: 9
72000012 AAGTCGTAAG
72000022 AAAATTATA
1 AAAATTATA
*
72000031 AAAAATATA
1 AAAATTATA
*
72000040 ACAAAATATA
1 A-AAATTATA
* *
72000050 AAATTTGTAA
1 AAAATTAT-A
72000060 AAAATTATA
1 AAAATTATA
72000069 AAAATTAT
1 AAAATTAT
72000077 CATACTAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
9 22 0.58
10 16 0.42
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAATTATA
Found at i:72000289 original size:20 final size:19
Alignment explanation
Indices: 72000266--72000334 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
72000256 CATTTTATAT
72000266 TTTTTTATGATTTTTATAAA
1 TTTTTTAT-ATTTTTATAAA
72000286 -TTTTTATAATATTTTAT-AA
1 TTTTTTAT-AT-TTTTATAAA
*
72000305 TATTTTATATTTTTAT--A
1 TTTTTTATATTTTTATAAA
72000322 -TTTTTATATTTTT
1 TTTTTTATATTTTT
72000335 TATTAAAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
16 12 0.27
17 1 0.02
18 6 0.14
19 13 0.30
20 12 0.27
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (19 bp):
TTTTTTATATTTTTATAAA
Found at i:72000320 original size:8 final size:8
Alignment explanation
Indices: 72000257--72000338 Score: 76
Period size: 10 Copynumber: 9.4 Consensus size: 8
72000247 TTTTTAATGC
72000257 ATTTTATAT
1 ATTTT-TAT
*
72000266 TTTTTTAT
1 ATTTTTAT
72000274 GATTTTTAT
1 -ATTTTTAT
72000283 AAATTTTTAT
1 --ATTTTTAT
72000293 AATATTTTAT
1 -AT-TTTTAT
72000303 AATATTTTAT
1 -AT-TTTTAT
72000313 ATTTTTAT
1 ATTTTTAT
72000321 ATTTTTAT
1 ATTTTTAT
72000329 ATTTTT-T
1 ATTTTTAT
72000336 ATT
1 ATT
72000339 AAAATTTGAT
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
7 4 0.06
8 23 0.34
9 16 0.24
10 24 0.36
ACGTcount: A:0.29, C:0.00, G:0.01, T:0.70
Consensus pattern (8 bp):
ATTTTTAT
Found at i:72007398 original size:12 final size:13
Alignment explanation
Indices: 72007375--72007399 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72007365 GTGTTTATTA
72007375 TATTGTTAAAAAG
1 TATTGTTAAAAAG
72007388 TATTGTTAAAAA
1 TATTGTTAAAAA
72007400 ATAAAATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (13 bp):
TATTGTTAAAAAG
Found at i:72011542 original size:55 final size:56
Alignment explanation
Indices: 72011452--72011583 Score: 152
Period size: 57 Copynumber: 2.5 Consensus size: 56
72011442 CTTATTCACC
* * *
72011452 TTAATATTAAAT-TATT---ATAAT-ACTTA-TATCAAGATAAGTATTAGATT-CT
1 TTAATATTAAATCTATTAAAATAATAACATATTATCAAGATAAGTATTAAATTAAT
* *
72011501 TTAATATTTAATCTATTAAATTAATAACATATTATCAAGATAAGTATTAAATTAAAT
1 TTAATATTAAATCTATTAAAATAATAACATATTATCAAGATAAGTATTAAATT-AAT
*
72011558 TTAATATTAAATTTATTAAAATAATA
1 TTAATATTAAATCTATTAAAATAATA
72011584 TTATTTTTGT
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
49 11 0.16
50 4 0.06
53 4 0.06
54 4 0.06
55 20 0.30
57 24 0.36
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.44
Consensus pattern (56 bp):
TTAATATTAAATCTATTAAAATAATAACATATTATCAAGATAAGTATTAAATTAAT
Found at i:72012387 original size:32 final size:32
Alignment explanation
Indices: 72012346--72012409 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
72012336 CGAAAACCCA
72012346 AATATCTCTTAACATACAACTCACATGACTGT
1 AATATCTCTTAACATACAACTCACATGACTGT
72012378 AATATCTCTTAACATACAACTCACATGACTGT
1 AATATCTCTTAACATACAACTCACATGACTGT
72012410 TTCGTTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
AATATCTCTTAACATACAACTCACATGACTGT
Found at i:72013461 original size:48 final size:48
Alignment explanation
Indices: 72013406--72013605 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
72013396 TGTTACAACA
*
72013406 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
72013454 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
72013502 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
72013550 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
72013598 TTCACATT
1 TTCACATT
72013606 CATCACATCG
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:72013705 original size:47 final size:47
Alignment explanation
Indices: 72013597--72013926 Score: 547
Period size: 47 Copynumber: 7.0 Consensus size: 47
72013587 CACACATATG
72013597 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
* *
72013646 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
72013693 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
*
72013742 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
72013789 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC-C
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
72013835 -TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
72013881 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
72013927 TCTCCTATAT
Statistics
Matches: 265, Mismatches: 12, Indels: 10
0.92 0.04 0.03
Matches are distributed among these distances:
45 43 0.16
46 2 0.01
47 140 0.53
49 80 0.30
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
Found at i:72013715 original size:96 final size:96
Alignment explanation
Indices: 72013597--72013924 Score: 610
Period size: 96 Copynumber: 3.5 Consensus size: 96
72013587 CACACATATG
*
72013597 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
72013662 TCGGCCATTAGGCCTTATCACATATATACTC
66 TCGGCCATTAGGCCTTATCACATATATACTC
72013693 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
72013758 TCGGCCATTAGGCCTTATCACATATATACAC
66 TCGGCCATTAGGCCTTATCACATATATACTC
72013789 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATAT--ACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
72013850 TCGGCCATTAGGCCTTATCACATATATACTC
66 TCGGCCATTAGGCCTTATCACATATATACTC
72013881 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
72013925 CATCTCCTAT
Statistics
Matches: 227, Mismatches: 3, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
92 85 0.37
94 11 0.05
96 131 0.58
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACTC
Found at i:72017600 original size:40 final size:40
Alignment explanation
Indices: 72017556--72017747 Score: 312
Period size: 40 Copynumber: 4.8 Consensus size: 40
72017546 CCAGCATGAT
* * * *
72017556 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
*
72017596 TGCTCTTCGGAACTTAGTCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
* *
72017636 TGCTCTTCGGAATTTAGTCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
72017676 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
*
72017716 TGCTCTTCGGAACTTAGTCCGGATATATCATT
1 TGCTCTTCGGAACTTAGTCCGGATACATCATT
72017748 CTCAATTCTC
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCATTAGCACGAA
Found at i:72019775 original size:48 final size:48
Alignment explanation
Indices: 72019720--72019919 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
72019710 TGTTACAACA
*
72019720 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
72019768 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
*
72019816 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
* *
72019864 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
72019912 TTCACATT
1 TTCACATT
72019920 CATCACATGG
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATATAT
Found at i:72019964 original size:96 final size:97
Alignment explanation
Indices: 72019911--72020293 Score: 697
Period size: 96 Copynumber: 4.0 Consensus size: 97
72019901 CACACATATG
72019911 TTTCACATTCATCACA-TGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
72019975 TCGGCCATTAGGCCTTATCACATATATAC-TC
66 TCGGCCATTAGGCCTTATCACATATATACATC
72020006 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
72020071 TCGGCCATTAGGCCTTATCACATATATACA-C
66 TCGGCCATTAGGCCTTATCACATATATACATC
72020102 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
72020167 TCGGCCATTAGGCCTTATCACATATATAC-TC
66 TCGGCCATTAGGCCTTATCACATATATACATC
* *
72020198 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
72020261 TTGGCCATTAGGCCTTATCACATATATACATC
66 TCGGCCATTAGGCCTTATCACATATATACATC
72020293 T
1 T
72020294 CCTACATATT
Statistics
Matches: 281, Mismatches: 3, Indels: 8
0.96 0.01 0.03
Matches are distributed among these distances:
94 52 0.19
95 19 0.07
96 210 0.75
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (97 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACATC
Found at i:72020018 original size:47 final size:47
Alignment explanation
Indices: 72019911--72020290 Score: 618
Period size: 47 Copynumber: 8.0 Consensus size: 47
72019901 CACACATATG
72019911 TTTCACATTCATCACA-TGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACAC
* * *
72019959 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
72020006 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACAC
* *
72020055 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
72020102 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACAC
* * *
72020151 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
*
72020198 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
72020245 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACA
72020291 TCTCCTACAT
Statistics
Matches: 311, Mismatches: 16, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
47 188 0.60
48 15 0.05
49 108 0.35
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACAC
Found at i:72020124 original size:143 final size:140
Alignment explanation
Indices: 72019912--72020290 Score: 614
Period size: 143 Copynumber: 2.6 Consensus size: 140
72019902 ACACATATGT
* *
72019912 TTCACATTCATCACATGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATC
1 TTCACATTCATCACATGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATT
* * *
72019977 GGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATCA
64 GGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCA
72020042 CATATATATACACC
129 C--ATATATACACC
72020056 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
1 TTCACATTCATCACAT-GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
72020121 GCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATC
65 GCCATTAGGCCTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATC
* *
72020186 ACATATATACTCT
128 ACATATATACACC
*
72020199 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTG
1 TTCACATTCATCACA-TGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
72020264 GCCATTAGGCCTTATCACATATATACA
65 GCCATTAGGCCTTATCACATATATACA
72020291 TCTCCTACAT
Statistics
Matches: 223, Mismatches: 8, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
141 9 0.04
143 134 0.60
144 17 0.08
145 63 0.28
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (140 bp):
TTCACATTCATCACATGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGG
CCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
TATATACACC
Found at i:72023057 original size:13 final size:13
Alignment explanation
Indices: 72023039--72023064 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72023029 ACCTTGTACT
72023039 CTTTCATATTCTG
1 CTTTCATATTCTG
72023052 CTTTCATATTCTG
1 CTTTCATATTCTG
72023065 TAAACATTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54
Consensus pattern (13 bp):
CTTTCATATTCTG
Found at i:72023779 original size:51 final size:50
Alignment explanation
Indices: 72023631--72023789 Score: 173
Period size: 50 Copynumber: 3.1 Consensus size: 50
72023621 ATATGTTTTG
72023631 CATTAAA-TACAGTCATGCATTATGTAACTCTCATATTAGTTAAGTTTGCAT
1 CATTAAATTA-AGTCATGCATTATGTAACTCTC-TATTAGTTAAGTTTGCAT
* * * * *
72023682 CA-TAAATTATGACACGCTTTATGTAACTCTCATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCTC-TATTAGTT-AAGTTTGCAT
* *
72023733 CATTAAATTAAGTCATGCATTAAGTAACTCATCTATTCA-TTTAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTC-TCTATT-AGTTAAGTTTGCAT
72023784 C-TTAAA
1 CATTAAA
72023790 CCATGCATTT
Statistics
Matches: 91, Mismatches: 12, Indels: 11
0.80 0.11 0.10
Matches are distributed among these distances:
50 35 0.38
51 26 0.29
52 27 0.30
53 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (50 bp):
CATTAAATTAAGTCATGCATTATGTAACTCTCTATTAGTTAAGTTTGCAT
Found at i:72025282 original size:22 final size:22
Alignment explanation
Indices: 72025246--72025288 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
72025236 AGGCTAGGTC
*
72025246 TACACTATATGGTCTTCATTTT
1 TACACTATATAGTCTTCATTTT
* *
72025268 TACACTATGTAGTCTTTATTT
1 TACACTATATAGTCTTCATTT
72025289 CTCCATATGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.16, G:0.09, T:0.51
Consensus pattern (22 bp):
TACACTATATAGTCTTCATTTT
Found at i:72025313 original size:75 final size:75
Alignment explanation
Indices: 72025190--72025341 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
72025180 TCAGAGTAGG
72025190 TTTTACACTATGTAGTCTTTATTTCTCCATATGATGTCATAGTCTCAGGCTAGGTCTACACTATA
1 TTTTACACTATGTAGTCTTTATTTCTCCATATGATGTCATAGTCTCAGGCTAGGTCTACACTATA
72025255 TGGTCTTCAT
66 TGGTCTTCAT
72025265 TTTTACACTATGTAGTCTTTATTTCTCCATATGATGTCATAGTCTCAGGCTAGGTCTACACTATA
1 TTTTACACTATGTAGTCTTTATTTCTCCATATGATGTCATAGTCTCAGGCTAGGTCTACACTATA
72025330 TGGTCTTCAT
66 TGGTCTTCAT
72025340 TT
1 TT
72025342 CCCTATATGA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.43
Consensus pattern (75 bp):
TTTTACACTATGTAGTCTTTATTTCTCCATATGATGTCATAGTCTCAGGCTAGGTCTACACTATA
TGGTCTTCAT
Found at i:72025350 original size:53 final size:52
Alignment explanation
Indices: 72025267--72025445 Score: 236
Period size: 53 Copynumber: 3.4 Consensus size: 52
72025257 GTCTTCATTT
* * * *
72025267 TTACACTATGTAGTCTTTATTTCTCCATATGATGTCATAGTCTCAGGCTAGGTC
1 TTACACTATATGGTCTTCATTTC-CCATATGATGTCATAGTC-CAGACTAGGTC
72025321 -TACACTATATGGTCTTCATTTCCCTATATGATGTCATAGTCCCAGACTAGGTC
1 TTACACTATATGGTCTTCATTTCCC-ATATGATGTCATAGT-CCAGACTAGGTC
* *
72025374 TTACACTATATGGTATTCATTTCCCAGATGAT-TCTATAGTCCTAGACTAGGTC
1 TTACACTATATGGTCTTCATTTCCCATATGATGTC-ATAGTCC-AGACTAGGTC
72025427 TTACACTATATGGTCTTCA
1 TTACACTATATGGTCTTCA
72025446 CTTGCCATGT
Statistics
Matches: 113, Mismatches: 7, Indels: 11
0.86 0.05 0.08
Matches are distributed among these distances:
52 6 0.05
53 83 0.73
54 24 0.21
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.39
Consensus pattern (52 bp):
TTACACTATATGGTCTTCATTTCCCATATGATGTCATAGTCCAGACTAGGTC
Found at i:72027542 original size:30 final size:28
Alignment explanation
Indices: 72027506--72027604 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
72027496 GACAAGATTG
* *
72027506 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
72027536 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
72027564 GCACTAAGTGTGCGAGCTGAA-TATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
72027591 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72027605 GACTCACTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 20 0.32
28 24 0.39
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:72027575 original size:28 final size:28
Alignment explanation
Indices: 72027506--72027604 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
72027496 GACAAGATTG
* * * *
72027506 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72027536 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
72027564 GCACTAAGTGTGCGAG-CTGAATATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72027591 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72027605 GACTCACTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72035358 original size:28 final size:28
Alignment explanation
Indices: 72035289--72035385 Score: 115
Period size: 28 Copynumber: 3.4 Consensus size: 28
72035279 GACAAGATTG
* * * *
72035289 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72035319 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
72035347 GCACTAAGTGTGCGAG-CTGAATATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72035374 GCACTAAGTGTG
1 GCACTAAGTGTG
72035386 TGGACTCACT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
27 21 0.34
28 22 0.36
30 18 0.30
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72035379 original size:27 final size:28
Alignment explanation
Indices: 72035318--72035385 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 28
72035308 AAAATTGTAC
* *
72035318 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
72035346 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
72035373 AGCACTAAGTGTG
1 AGCACTAAGTGTG
72035386 TGGACTCACT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:72040567 original size:22 final size:19
Alignment explanation
Indices: 72040542--72040584 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 19
72040532 ATTCAAAATA
72040542 ATTCATAAATCATAACAATATT
1 ATTCA-AAATCAT-AC-ATATT
*
72040564 ATTCAAACTCATACATATT
1 ATTCAAAATCATACATATT
72040583 AT
1 AT
72040585 CCTTTATACG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
20 2 0.10
21 6 0.30
22 5 0.25
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTCAAAATCATACATATT
Found at i:72041506 original size:30 final size:30
Alignment explanation
Indices: 72041436--72041498 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
72041426 ACTGCAGGGG
72041436 TCACACGGCCATGTAGTCAGGCCGTGTGAC
1 TCACACGGCCATGTAGTCAGGCCGTGTGAC
*
72041466 TCACACGGCCATGTAGTCAGGTCGTGTGAC
1 TCACACGGCCATGTAGTCAGGCCGTGTGAC
72041496 TCA
1 TCA
72041499 TATGGCCAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (30 bp):
TCACACGGCCATGTAGTCAGGCCGTGTGAC
Found at i:72043266 original size:44 final size:41
Alignment explanation
Indices: 72043192--72043351 Score: 167
Period size: 43 Copynumber: 3.8 Consensus size: 41
72043182 CGATATGTGT
* *
72043192 TTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAGTTATGA
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGA-TT-TGA
**
72043235 TTTACGTGTAAGACCATGTCTAAGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCATGTCTGGGACATTGGCATCG-ATTTGA
* *
72043278 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA
1 TTTCGTGTAAGACCATGTCTGGGACATTGGCATCG--ATTTGA
* * * * *
72043321 TTACATGTAAGACTACGTCTGGGACGTTGGC
1 TTTCGTGTAAGACCATGTCTGGGACATTGGC
72043352 CTTGTACGAG
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
42 28 0.28
43 40 0.40
44 30 0.30
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (41 bp):
TTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATTTGA
Found at i:72050862 original size:27 final size:26
Alignment explanation
Indices: 72050825--72050908 Score: 114
Period size: 27 Copynumber: 3.2 Consensus size: 26
72050815 AGCATGGCTG
*
72050825 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
72050851 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
72050878 CCAGAACAGATATTTGTGGCAAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
72050905 CCAG
1 CCAG
72050909 TATACTCCCT
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 12 0.23
27 41 0.77
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:72053719 original size:42 final size:42
Alignment explanation
Indices: 72053610--72053771 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 42
72053600 CGATATGTGT
* *
72053610 TTTCGTGTAAGACCACGTCTGGAACGTTGGCATCG-ACTTATGA
1 TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGA
* *
72053653 TTTACGTGTAAGTCCATGTCTGGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
* * *
72053696 TTTCGTTTAAGACC-CTGTCTGGGACAGTGGCATCAATATTTGA
1 TTTCGTGTAAGACCAC-GTCTGGGACATTGGCATC-GTATTTGA
* * * *
72053739 TTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 TTTCGTGTAAGACCACGTCTGGGACATTGGCAT
72053772 TGTACGAGCT
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
42 26 0.26
43 41 0.41
44 31 0.31
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
Found at i:72055782 original size:25 final size:25
Alignment explanation
Indices: 72055754--72055848 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 25
72055744 TTCTCCGAGA
* *
72055754 TGAATAACAAGAAGCTCATGTTAGC
1 TGAATAACGAGAAGCTCATGTGAGC
*
72055779 TGAATAATGAGAAGCTCATGTGAGC
1 TGAATAACGAGAAGCTCATGTGAGC
* * *
72055804 CGAAAAACGAGAAGCTCAT-TCGAGT
1 TGAATAACGAGAAGCTCATGT-GAGC
*
72055829 TGAATAATG-GAAAGCTCATG
1 TGAATAACGAG-AAGCTCATG
72055849 GTGTGTTATC
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
24 2 0.04
25 55 0.96
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (25 bp):
TGAATAACGAGAAGCTCATGTGAGC
Found at i:72056300 original size:31 final size:31
Alignment explanation
Indices: 72056264--72056323 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
72056254 TTAGGCTCAG
72056264 AAAATAAAATTCATACAATTTAATCCTTAGA
1 AAAATAAAATTCATACAATTTAATCCTTAGA
*
72056295 AAAATAATATTCATACAATTTAATCCTTA
1 AAAATAAAATTCATACAATTTAATCCTTA
72056324 CTCAAGCCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.50, C:0.13, G:0.02, T:0.35
Consensus pattern (31 bp):
AAAATAAAATTCATACAATTTAATCCTTAGA
Found at i:72063805 original size:40 final size:40
Alignment explanation
Indices: 72063760--72063926 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
72063750 TCGGAATATA
72063760 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
72063800 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTATC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
72063840 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72063880 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72063919 CCGGATAT
1 CCGGATAT
72063927 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72063910 original size:80 final size:79
Alignment explanation
Indices: 72063776--72063926 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 79
72063766 ATAATCACGT
* *
72063776 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTATCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
72063841 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
72063856 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
72063919 CCGGATAT
64 CCGGATAT
72063927 CATTCAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:72065189 original size:59 final size:58
Alignment explanation
Indices: 72065117--72065233 Score: 146
Period size: 59 Copynumber: 2.0 Consensus size: 58
72065107 TCCCCTTTTC
*
72065117 CCTTAGTATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTTTCTTTTCTTT
1 CCTTAGTAATTCGGCCAAGAAGATGGAG-AAGGATGAACAAATTTTTTTTCTTTTCTTT
*** ** *
72065175 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTTTTTTTCTTT
1 CCTTAGTA-ATTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTTTCTTTTCTTT
72065234 TTCCATACTC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
58 8 0.16
59 39 0.78
60 3 0.06
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (58 bp):
CCTTAGTAATTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTTTCTTTTCTTT
Found at i:72071809 original size:40 final size:40
Alignment explanation
Indices: 72071764--72071930 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
72071754 CGGAATATAA
72071764 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72071804 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
72071844 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72071884 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72071923 CCGGATAT
1 CCGGATAT
72071931 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72071914 original size:80 final size:79
Alignment explanation
Indices: 72071780--72071930 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
72071770 ATAATCACGT
*
72071780 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
72071845 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
72071860 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
72071923 CCGGATAT
64 CCGGATAT
72071931 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:72074243 original size:47 final size:47
Alignment explanation
Indices: 72074189--72074382 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
72074179 CTAGGATTTT
** * *
72074189 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72074236 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
72074283 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
72074330 ATTTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72074377 ATGTGA
1 ATGTGA
72074383 AATATGTATG
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72074289 original size:22 final size:22
Alignment explanation
Indices: 72074218--72074289 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
72074208 GTATATATGA
72074218 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
72074240 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
72074265 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
72074287 GAT
1 GAT
72074290 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:72074410 original size:48 final size:48
Alignment explanation
Indices: 72074353--72074488 Score: 211
Period size: 50 Copynumber: 2.8 Consensus size: 48
72074343 GAACATGCAT
72074353 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
72074401 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
*
72074451 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
72074489 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
47 1 0.01
48 33 0.41
49 4 0.05
50 41 0.51
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:72074503 original size:50 final size:50
Alignment explanation
Indices: 72074347--72074509 Score: 201
Period size: 50 Copynumber: 3.3 Consensus size: 50
72074337 GAATATGAAC
*
72074347 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
72074397 ATGC--ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGAT
* * *
72074447 AT--GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
72074495 GTGCGTATATTGTGG
1 ATGCGTATA-TGTGG
72074510 CCAAATGACC
Statistics
Matches: 98, Mismatches: 6, Indels: 17
0.81 0.05 0.14
Matches are distributed among these distances:
47 1 0.01
48 38 0.39
49 4 0.04
50 49 0.50
51 6 0.06
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (50 bp):
ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:72074742 original size:37 final size:37
Alignment explanation
Indices: 72074634--72074742 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
72074624 GGAAATATAT
*
72074634 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
72074671 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
72074708 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
72074743 CGTTTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:72080464 original size:31 final size:31
Alignment explanation
Indices: 72080429--72080490 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
72080419 CTTTTCACAC
72080429 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
** *
72080460 TTCATATTTCATATTACTGGGCTGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
72080491 AACTGTAAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:72080790 original size:25 final size:24
Alignment explanation
Indices: 72080698--72080804 Score: 171
Period size: 24 Copynumber: 4.4 Consensus size: 24
72080688 TTGGAGGCCT
*
72080698 AGCCTCTTTTAATAACTGGGG-AAA
1 AGCC-CTTTTAATAACTGGGGCATA
72080722 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
72080746 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
72080770 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTGGGGCATA
72080795 AGCCCTTTTA
1 AGCCCTTTTA
72080805 CACTTCCTCC
Statistics
Matches: 78, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
23 16 0.21
24 39 0.50
25 23 0.29
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:72080796 original size:49 final size:47
Alignment explanation
Indices: 72080698--72080804 Score: 169
Period size: 49 Copynumber: 2.2 Consensus size: 47
72080688 TTGGAGGCCT
72080698 AGCCTCTTTTAATAACTGGGGAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGAAAAGCCCTTTTAATAACTGGGGCATA
* *
72080746 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGG-AAAAGCCCTTT-TAATAACTGGGGCATA
72080795 AGCCCTTTTA
1 AGCCCTTTTA
72080805 CACTTCCTCC
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
47 16 0.29
48 14 0.25
49 25 0.45
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (47 bp):
AGCCCTTTTAATAACTGGGGAAAAGCCCTTTTAATAACTGGGGCATA
Found at i:72080898 original size:20 final size:20
Alignment explanation
Indices: 72080855--72080899 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
72080845 ATGAATACAT
* **
72080855 CATGTGCATATCATACGTGT
1 CATGTGCATATCATACATAC
72080875 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
72080895 CATGT
1 CATGT
72080900 TTATCAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:72090567 original size:47 final size:47
Alignment explanation
Indices: 72090508--72090701 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
72090498 TTAGGATTTT
** * *
72090508 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
72090555 ATGTGATAAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72090602 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
72090649 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72090696 ATGTGA
1 ATGTGA
72090702 AATATGTATG
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 135 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72090584 original size:25 final size:25
Alignment explanation
Indices: 72090555--72090635 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 25
72090545 CGAATGGCCA
72090555 ATGTGATAAATGTGAACATGCATAT
1 ATGTGATAAATGTGAACATGCATAT
* *
72090580 ATGTGAT-AAGGTCG-A-ATGGC-CA-
1 ATGTGATAAATGT-GAACAT-GCATAT
*
72090602 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATAAATGTGAACATGCATAT
72090627 ATGTGATAA
1 ATGTGATAA
72090636 GGCCGAATGG
Statistics
Matches: 44, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
22 8 0.18
23 10 0.23
24 10 0.23
25 16 0.36
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.30
Consensus pattern (25 bp):
ATGTGATAAATGTGAACATGCATAT
Found at i:72090607 original size:94 final size:94
Alignment explanation
Indices: 72090508--72090791 Score: 299
Period size: 94 Copynumber: 3.0 Consensus size: 94
72090498 TTAGGATTTT
** * *
72090508 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATAAATATGAACA
* *
72090573 TGCATATATGTGATAAGGTCGAATGGCCA
66 TGCATATATGTGATAAAGCCGAATGGCCA
* *
72090602 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATAAATATGAACA
* *
72090667 TGCATATATGTGGTAAAGCCGAATGGCTA
66 TGCATATATGTGATAAAGCCGAATGGCCA
* * * * *
72090696 ATGTGA-AATATGTATGAGATATGCATATGTG-G-TAAAGCCGAATGGTCAATGTGAAATATATA
1 ATGTGATGA-ATG--TGA-ACATGCATATATGAGATAAGGCCGAATGGCCAATGTG--ATA-A-A
* *
72090758 TATGAGATATG--TATATGTGGTAAAGCCGAATGGC
58 TATGA-ACATGCATATATGTGATAAAGCCGAATGGC
72090792 TAGTGTGAAA
Statistics
Matches: 164, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
93 1 0.01
94 93 0.57
95 19 0.12
96 4 0.02
97 13 0.08
98 24 0.15
99 6 0.04
100 4 0.02
ACGTcount: A:0.36, C:0.10, G:0.27, T:0.28
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATAAATATGAACA
TGCATATATGTGATAAAGCCGAATGGCCA
Found at i:72090608 original size:22 final size:22
Alignment explanation
Indices: 72090537--72090655 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
72090527 GTATATATGA
*
72090537 GATAAGGCCGAATGGCCAATGT
1 GATAAGGTCGAATGGCCAATGT
* *
72090559 GATAAATGT-GAACAT-GCATATATGT
1 GAT-AAGGTCG-A-ATGGC-CA-ATGT
72090584 GATAAGGTCGAATGGCCAATGT
1 GATAAGGTCGAATGGCCAATGT
* *
72090606 GATGAATGT-GAACAT-GCATATATGT
1 GAT-AAGGTCG-A-ATGGC-CA-ATGT
*
72090631 GATAAGGCCGAATGGCCAATGT
1 GATAAGGTCGAATGGCCAATGT
72090653 GAT
1 GAT
72090656 GAATATGAAC
Statistics
Matches: 73, Mismatches: 10, Indels: 28
0.66 0.09 0.25
Matches are distributed among these distances:
22 19 0.26
23 19 0.26
24 19 0.26
25 16 0.22
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
GATAAGGTCGAATGGCCAATGT
Found at i:72090764 original size:50 final size:48
Alignment explanation
Indices: 72090671--72090953 Score: 426
Period size: 48 Copynumber: 5.8 Consensus size: 48
72090661 TGAACATGCA
72090671 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
72090719 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
72090769 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
72090817 TATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
72090867 TATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
72090915 TATATGTGGTAAAGCCGAATGACTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
72090954 GGCGATGTGC
Statistics
Matches: 215, Mismatches: 12, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
47 2 0.01
48 121 0.56
49 8 0.04
50 82 0.38
51 2 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:72090969 original size:98 final size:98
Alignment explanation
Indices: 72090671--72090935 Score: 503
Period size: 98 Copynumber: 2.7 Consensus size: 98
72090661 TGAACATGCA
* *
72090671 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
72090736 AATGGTCAATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATATGAGATATG
72090769 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
72090834 AATGGTCAATGTGAAATATATATATGAGATATG
66 AATGGTCAATGTGAAATATATATATGAGATATG
*
72090867 TATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
72090932 AATG
66 AATG
72090936 ACTAGTGTGA
Statistics
Matches: 164, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 164 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (98 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
AATGGTCAATGTGAAATATATATATGAGATATG
Found at i:72091282 original size:37 final size:37
Alignment explanation
Indices: 72091100--72091281 Score: 310
Period size: 37 Copynumber: 4.9 Consensus size: 37
72091090 GGAAATATAT
72091100 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
72091137 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72091174 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
72091211 TTCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
72091248 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
72091282 TCGTCTGAGC
Statistics
Matches: 136, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 136 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:72092932 original size:20 final size:20
Alignment explanation
Indices: 72092907--72092973 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
72092897 TTATGAATAC
72092907 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* * *
72092927 ATCATGTGTAGATCATACGT
1 ATCATGTGCATATCATACAT
*
72092947 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
72092967 ACCATGT
1 ATCATGT
72092974 TTATCAAAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72097931 original size:27 final size:27
Alignment explanation
Indices: 72097887--72097948 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
72097877 CAAAATAGTC
* *
72097887 ATTTTACCCTACAGGGGTATTTCAGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
* *
72097914 ATTTTACACTTCAAGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
72097941 ATTTTACA
1 ATTTTACA
72097949 AACTGGGGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAGTA
Found at i:72097958 original size:27 final size:27
Alignment explanation
Indices: 72097928--72098104 Score: 228
Period size: 27 Copynumber: 6.6 Consensus size: 27
72097918 TACACTTCAA
72097928 GGGTATTTCGGTAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAACTGG
*
72097955 GGGTATTTTGGTAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAACTGG
** *
72097982 GGGTATTTTAGTAATTTTACAAACTTG
1 GGGTATTTCGGTAATTTTACAAACTGG
* * *
72098009 GGGTATTTTGGTAATTTTACAAATTAG
1 GGGTATTTCGGTAATTTTACAAACTGG
* *
72098036 GGGTATTTCGATAATTTTACAAACCGG
1 GGGTATTTCGGTAATTTTACAAACTGG
** * * *
72098063 GGGTATTTCATTAATTTCACAAATTAG
1 GGGTATTTCGGTAATTTTACAAACTGG
72098090 GGGTATTTCGGTAAT
1 GGGTATTTCGGTAAT
72098105 CTAAACAGTT
Statistics
Matches: 131, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTGG
Found at i:72097958 original size:54 final size:54
Alignment explanation
Indices: 72097900--72098104 Score: 259
Period size: 54 Copynumber: 3.8 Consensus size: 54
72097890 TTACCCTACA
* *
72097900 GGGGTATTTCAGTAATTTTAC-ACTTCAAGGGTATTTCGGTAATTTTACAAACTG
1 GGGGTATTTCAGTAATTTTACAAATT-AGGGGTATTTCGGTAATTTTACAAACTG
** * * ** *
72097954 GGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAAACTT
1 GGGGTATTTCAGTAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAACTG
** * *
72098008 GGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCGATAATTTTACAAACCG
1 GGGGTATTTCAGTAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAACTG
* *
72098062 GGGGTATTTCATTAATTTCACAAATTAGGGGTATTTCGGTAAT
1 GGGGTATTTCAGTAATTTTACAAATTAGGGGTATTTCGGTAAT
72098105 CTAAACAGTT
Statistics
Matches: 129, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
54 127 0.98
55 2 0.02
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (54 bp):
GGGGTATTTCAGTAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAACTG
Found at i:72098022 original size:81 final size:82
Alignment explanation
Indices: 72097900--72098104 Score: 283
Period size: 81 Copynumber: 2.5 Consensus size: 82
72097890 TTACCCTACA
* *
72097900 GGGGTATTTCAGTAATTTTAC--ACTTCAAGGGTATTTCGGTAATTTTACAAACTGGGGGTATTT
1 GGGGTATTTCAGTAATTTTACAAACTT-AGGGGTATTTCGGTAATTTTACAAACTAGGGGTATTT
* * *
72097963 TGGTAATTTTACAAACTG
65 CGATAATTTTACAAACCG
* * *
72097981 GGGGTATTTTAGTAATTTTACAAACTT-GGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTC
1 GGGGTATTTCAGTAATTTTACAAACTTAGGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTC
72098045 GATAATTTTACAAACCG
66 GATAATTTTACAAACCG
* *
72098062 GGGGTATTTCATTAATTTCACAAA-TTAGGGGTATTTCGGTAAT
1 GGGGTATTTCAGTAATTTTACAAACTTAGGGGTATTTCGGTAAT
72098105 CTAAACAGTT
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
80 2 0.02
81 103 0.94
83 4 0.04
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (82 bp):
GGGGTATTTCAGTAATTTTACAAACTTAGGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTC
GATAATTTTACAAACCG
Found at i:72106446 original size:16 final size:16
Alignment explanation
Indices: 72106425--72106456 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
72106415 GCTAAAAAAC
72106425 ATAATAAAACATGTAG
1 ATAATAAAACATGTAG
72106441 ATAATAAAACATGTAG
1 ATAATAAAACATGTAG
72106457 GCTATCCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (16 bp):
ATAATAAAACATGTAG
Found at i:72108353 original size:40 final size:40
Alignment explanation
Indices: 72108305--72108515 Score: 203
Period size: 40 Copynumber: 5.3 Consensus size: 40
72108295 TGTCCGGGCT
* * * * *
72108305 AAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCC-GGTC
1 AAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGTC
* * * *
72108345 AATTCCCGAAGGCATTTATGCTAGTTACCAAAACCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
*
72108385 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
* * *
72108425 AAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGG-C
1 AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
* * * * * *
72108464 TAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-C
1 -AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
72108504 AATGTCCCGAAG
1 AA-GTCCCGAAG
72108516 ACAATCGAGC
Statistics
Matches: 145, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
39 12 0.08
40 133 0.92
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTC
Found at i:72108432 original size:80 final size:79
Alignment explanation
Indices: 72108298--72108515 Score: 229
Period size: 80 Copynumber: 2.7 Consensus size: 79
72108288 CGAATGGTGT
* * * * * *
72108298 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGTCAATTCCCGAAGGCATTTA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGTCAAGTCCCGAAGGCATTCA
*
72108363 TGCTAGTTACCAAAA
65 TGCGAGTTACCAAAA
* * * *
72108378 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACC-GGTCAAGTCCCGAAGGCATTCA
* *
72108443 TGCGAGTTACTAAAT
65 TGCGAGTTACCAAAA
* * * * * * *
72108458 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCAATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGTCAA-GTCCCGAAG
72108516 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
79 14 0.12
80 100 0.88
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGTCAAGTCCCGAAGGCATTCAT
GCGAGTTACCAAAA
Found at i:72108511 original size:120 final size:120
Alignment explanation
Indices: 72108298--72108515 Score: 278
Period size: 120 Copynumber: 1.8 Consensus size: 120
72108288 CGAATGGTGT
* * * *
72108298 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGTCAATTCCCGAAGGCATTTA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCAATTCCCGAAGGCAATTA
* * * *
72108363 TGCTAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 TGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
72108418 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGC-AATTCCCGAAGGCAATT
* * *
72108482 GTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
65 ATGCGAATCACCAAAACCGGGTCAA-GTCCCGAAG
72108516 ACAATCGAGC
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
119 17 0.21
120 65 0.79
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCAATTCCCGAAGGCAATTA
TGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:72108536 original size:40 final size:41
Alignment explanation
Indices: 72108376--72108541 Score: 153
Period size: 40 Copynumber: 4.1 Consensus size: 41
72108366 TAGTTACCAA
* * * * * *
72108376 AACCGGGTTAA-GTCCCGAAGGCATTTGTGCGAGTTACCAA
1 AACCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTAT
* * *
72108416 AACCGGGTTAA-GTCCCGAAGGCATTCGTGCGAGTTACTA-
1 AACCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTAT
* *
72108455 AATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAATCACTAT
1 AA-CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTAT
* * *
72108496 AACCGGGC-AATGTCCCGAAGACAATCGAGCGAGTCGCTAT
1 AACCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTAT
*
72108536 ATCCGG
1 AACCGG
72108542 TTAAATTCCG
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.05
40 102 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.27, T:0.21
Consensus pattern (41 bp):
AACCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTAT
Found at i:72108550 original size:80 final size:80
Alignment explanation
Indices: 72108378--72108541 Score: 186
Period size: 80 Copynumber: 2.0 Consensus size: 80
72108368 GTTACCAAAA
* * * * * * * *
72108378 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGACAATCG
* *
72108443 TGCGAGTTACTAAAT
66 AGCGAGTCACTAAAT
* *
72108458 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAATC
1 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAAGACAATC
* *
72108522 GAGCGAGTCGCTATAT
65 GAGCGAGTCACTAAAT
72108538 CCGG
1 CCGG
72108542 TTAAATTCCG
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
79 2 0.03
80 67 0.97
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGACAATCG
AGCGAGTCACTAAAT
Found at i:72116445 original size:39 final size:40
Alignment explanation
Indices: 72116346--72116562 Score: 224
Period size: 40 Copynumber: 5.5 Consensus size: 40
72116336 CGAATGGTGT
* * * * * *
72116346 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
72116387 CC-GGTCAATTCCCGAAGGCATTTGTGCTAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
72116426 CCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
72116465 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * * *
72116505 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
72116545 CCGGG-TAATGTCCCGAAG
1 CCGGGTTAA-GTCCCGAAG
72116563 ACAATCGAGC
Statistics
Matches: 150, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 51 0.34
40 97 0.65
41 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:72116549 original size:80 final size:79
Alignment explanation
Indices: 72116345--72116576 Score: 236
Period size: 79 Copynumber: 2.9 Consensus size: 79
72116335 TCGAATGGTG
* * * * *
72116345 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCC-GGTCAATTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TCACTAAA-CCGGGTTAAGTCCCGAAGGCATT
* *
72116409 TGTGCTAGTTACCAAA
64 CGTGCGAGTTACCAAA
* * * * *
72116425 ACCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCA-CTAAACCGGGTTAAGTCCCGAAGGCATTC
*
72116489 GTGCGAGTTACTAAA
65 GTGCGAGTTACCAAA
* * * *
72116504 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-TAATGTCCCGAAGACAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTA-AACCGGGTTAA-GTCCCGAAGGCATT
*
72116568 CGAGCGAGT
64 CGTGCGAGT
72116577 CGCTATATCC
Statistics
Matches: 125, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
78 4 0.03
79 65 0.52
80 56 0.45
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATCACTAAACCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACCAAA
Found at i:72116583 original size:40 final size:41
Alignment explanation
Indices: 72116346--72116588 Score: 146
Period size: 40 Copynumber: 6.1 Consensus size: 41
72116336 CGAATGGTGT
** * * *
72116346 CCGGGCTAA-GTCCCGAAGGCTTTTGTGCTAAGTGACTA-AA
1 CCGGGCTAATGTCCCGAAGGCAATCGTGC-GAGTCACTATAA
* * * * * * *
72116386 TCCGGTC-AAT-TCCCGAAGGCATTTGTGCTAGTTACCAAAA
1 -CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * * * * *
72116426 CCGGGTTAA-GT-CCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * *
72116465 CCGGGTTAA-GTCCCGAAGGCATTCGTGCGAGTTACTA-AA
1 CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* *
72116504 TCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * * *
72116545 CCGGG-TAATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
72116585 CCGG
1 CCGG
72116589 TTAAATTCCG
Statistics
Matches: 172, Mismatches: 21, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
39 54 0.31
40 111 0.65
41 7 0.04
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (41 bp):
CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
Found at i:72116587 original size:80 final size:80
Alignment explanation
Indices: 72116437--72116588 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
72116427 CGGGTTAAGT
* * * * * * *
72116437 CCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
1 CCGAAGGCAATTGTGCGAATCACCAAAACCGGGTTAAGTCCCGAAGACAATCGAGCGAGTCACTA
72116502 AATCCGGGCTAATTC
66 AATCCGGGCTAATTC
* * *
72116517 CCGAAGGCAATTGTGCGAATCACTATAACCGGG-TAATGTCCCGAAGACAATCGAGCGAGTCGCT
1 CCGAAGGCAATTGTGCGAATCACCAAAACCGGGTTAA-GTCCCGAAGACAATCGAGCGAGTCACT
*
72116581 ATATCCGG
65 AAATCCGG
72116589 TTAAATTCCG
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (80 bp):
CCGAAGGCAATTGTGCGAATCACCAAAACCGGGTTAAGTCCCGAAGACAATCGAGCGAGTCACTA
AATCCGGGCTAATTC
Found at i:72116596 original size:80 final size:79
Alignment explanation
Indices: 72116426--72116602 Score: 187
Period size: 80 Copynumber: 2.2 Consensus size: 79
72116416 GTTACCAAAA
* * * * * * * *
72116426 CCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAATTCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTTAAGTCCCGAAGACAATCGA
*
72116491 GCGAGTTACTAAAT
66 GCGAGTCACTAAAT
* *
72116505 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-TAATGTCCCGAAGACAATC
1 CCGGGCTAATT-CCGAAGGCAATTGTGCGAATCACCAAAACCGGGTTAA-GTCCCGAAGACAATC
* *
72116569 GAGCGAGTCGCTATAT
64 GAGCGAGTCACTAAAT
*
72116585 CC-GGTTAAATTCCGAAGG
1 CCGGGCT-AATTCCGAAGG
72116603 TACGTGATTC
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
79 22 0.27
80 59 0.73
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
CCGGGCTAATTCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTTAAGTCCCGAAGACAATCGA
GCGAGTCACTAAAT
Found at i:72118407 original size:25 final size:25
Alignment explanation
Indices: 72118350--72118452 Score: 93
Period size: 25 Copynumber: 4.2 Consensus size: 25
72118340 ACATGTATGA
*
72118350 TCATACGAGCTGTA-AACGGTAAGC
1 TCATACGAGCTGAATAACGGTAAGC
* *
72118374 TTC-TTCGAGCTGAATAACGTTAAGC
1 -TCATACGAGCTGAATAACGGTAAGC
* * * *
72118399 TGATACGAGCTGAGTATCGGTAACC
1 TCATACGAGCTGAATAACGGTAAGC
* * *
72118424 TCATACGAGCTGAGTATCGATAAGC
1 TCATACGAGCTGAATAACGGTAAGC
72118449 TCAT
1 TCAT
72118453 TAAAGCTTAA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
24 10 0.16
25 54 0.84
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (25 bp):
TCATACGAGCTGAATAACGGTAAGC
Found at i:72119742 original size:29 final size:30
Alignment explanation
Indices: 72119684--72119759 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 30
72119674 TTTGGCTATT
72119684 GAAATATGAAAAGGGATGGTGATCAACATC
1 GAAATATGAAAAGGGATGGTGATCAACATC
* *
72119714 -AACA-ATGAAAAGGGATGGTGATGACCATC
1 GAA-ATATGAAAAGGGATGGTGATCAACATC
*
72119743 GAAATATTAAAAGGGAT
1 GAAATATGAAAAGGGAT
72119760 AGCTTTGAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.45, C:0.09, G:0.26, T:0.20
Consensus pattern (30 bp):
GAAATATGAAAAGGGATGGTGATCAACATC
Found at i:72119814 original size:30 final size:30
Alignment explanation
Indices: 72119751--72119819 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
72119741 TCGAAATATT
* *
72119751 AAAAGGGATAGCTTTGAATATTAAAATATG
1 AAAAGGGATAGCTTCGAATATTAAAATACG
* * *
72119781 AAAAGGGATAGCTTCGACTATTGAATTACG
1 AAAAGGGATAGCTTCGAATATTAAAATACG
*
72119811 AAAATGGAT
1 AAAAGGGAT
72119820 GGTGATAGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.28
Consensus pattern (30 bp):
AAAAGGGATAGCTTCGAATATTAAAATACG
Found at i:72119900 original size:119 final size:119
Alignment explanation
Indices: 72119679--72119909 Score: 297
Period size: 119 Copynumber: 1.9 Consensus size: 119
72119669 ATAACTTTGG
* ** *
72119679 CTATTGAAATATGAAAAGGGATGGTGATCAACATCAACAATGAAAAGGGATGGTGATGACCATCG
1 CTATTGAAATACGAAAAGGGATGGTGATCAACATCAACAATGAAAAAAGATGGTGACGACCATCG
* * *
72119744 AAATATTAAAAGGGATAGCTTTGAATATTAAAATATGAAAAGGGATAGCTTCGA
66 AAATATGAAAAGGGATAGCTTAGAATATCAAAATATGAAAAGGGATAGCTTCGA
* * *
72119798 CTATTGAATTACGAAAATGGATGGTGAT-AGCCATCAACAATGAAAAAAGATGGTGACGACCATC
1 CTATTGAAATACGAAAAGGGATGGTGATCA-ACATCAACAATGAAAAAAGATGGTGACGACCATC
* * *
72119862 -AAACTATGAAAAGGGATAGCTTCAG-CTATCGAACTATGAAAAGGGATA
65 GAAA-TATGAAAAGGGATAGCTT-AGAATATCAAAATATGAAAAGGGATA
72119910 ATGACAACCA
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
118 4 0.04
119 91 0.95
120 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (119 bp):
CTATTGAAATACGAAAAGGGATGGTGATCAACATCAACAATGAAAAAAGATGGTGACGACCATCG
AAATATGAAAAGGGATAGCTTAGAATATCAAAATATGAAAAGGGATAGCTTCGA
Found at i:72123862 original size:25 final size:25
Alignment explanation
Indices: 72123820--72123868 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
72123810 TGTACGCTAG
** *
72123820 TAGTAAAATTGAGGTTTAAAAATTT
1 TAGTAAAATCAAGCTTTAAAAATTT
72123845 TAGTAAAATCAAGCTTTAAAAATT
1 TAGTAAAATCAAGCTTTAAAAATT
72123869 AACATGTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.37
Consensus pattern (25 bp):
TAGTAAAATCAAGCTTTAAAAATTT
Found at i:72124619 original size:13 final size:14
Alignment explanation
Indices: 72124601--72124629 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72124591 AAATATAATA
72124601 TTATAT-ATAATTT
1 TTATATGATAATTT
72124614 TTATATGATAATTT
1 TTATATGATAATTT
72124628 TT
1 TT
72124630 GCTATTTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (14 bp):
TTATATGATAATTT
Found at i:72127598 original size:6 final size:6
Alignment explanation
Indices: 72127567--72127631 Score: 60
Period size: 6 Copynumber: 10.8 Consensus size: 6
72127557 AATATAGTTC
* * * * *
72127567 AAAATAT AAAAA- CAAAAT CAACAT AAGAAT AAAAAT AAGAAT AAAAAT
1 AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
72127615 AAAAAT AAAAAC AAAAA
1 AAAAAT AAAAAT AAAAA
72127632 CAAATGGACT
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
5 4 0.08
6 40 0.83
7 4 0.08
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:72131428 original size:24 final size:24
Alignment explanation
Indices: 72131401--72131487 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
72131391 CTTATTATGT
72131401 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
72131425 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
72131449 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
72131473 TCGCACACATAGTGC
1 TCGCACACATAGTGC
72131488 ATTTGAGATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:72137721 original size:43 final size:43
Alignment explanation
Indices: 72137658--72137765 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
72137648 TGAAAAAAAT
**
72137658 GCCGCTAAAGGTCATGACCTTTAGCGGTGCTTTTCCCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGTGCTTTTCCCACAAAC
* **
72137701 GTCGCTAAAGAACATGACCTTTAGCGGTGCTTTTCTTACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGGTGCTTTTCCCACAAAC
*
72137744 GCCACTAAA-AATCATGACCTTT
1 GCCGCTAAAGAA-CATGACCTTT
72137766 TAAAAAATTA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 2 0.04
43 55 0.96
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (43 bp):
GCCGCTAAAGAACATGACCTTTAGCGGTGCTTTTCCCACAAAC
Found at i:72139563 original size:15 final size:16
Alignment explanation
Indices: 72139540--72139569 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72139530 CTCTCTTGCA
72139540 TTTAGATCATATATAT
1 TTTAGATCATATATAT
72139556 TTTA-ATCATATATA
1 TTTAGATCATATATA
72139570 AGAAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (16 bp):
TTTAGATCATATATAT
Found at i:72143586 original size:16 final size:16
Alignment explanation
Indices: 72143565--72143618 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
72143555 AGAATCAGAT
72143565 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
72143581 AAAA-TT---A--TTG
1 AAAATTTGAAATCTTG
*
72143591 AAAATTTGAAATCTTT
1 AAAATTTGAAATCTTG
72143607 AAAATTTGAAAT
1 AAAATTTGAAAT
72143619 TATTTAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 2 0.06
12 1 0.03
14 1 0.03
15 2 0.06
16 18 0.58
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (16 bp):
AAAATTTGAAATCTTG
Found at i:72143832 original size:37 final size:38
Alignment explanation
Indices: 72143738--72143832 Score: 122
Period size: 37 Copynumber: 2.6 Consensus size: 38
72143728 CTAAACCCTA
*
72143738 AACCCTTAAACCCCTAACCC-CTAACCCATGCCCCCTT
1 AACCCTTAAACCCCTAACCCTCTAACCCATGCCCACTT
* * *
72143775 AATCCTTAAACCCCTAACCCTC-AAGCCATGTCCACTT
1 AACCCTTAAACCCCTAACCCTCTAACCCATGCCCACTT
* *
72143812 AACCCATAAACCCTTAACCCT
1 AACCCTTAAACCCCTAACCCT
72143833 TAAATATTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
37 49 0.98
38 1 0.02
ACGTcount: A:0.31, C:0.45, G:0.03, T:0.21
Consensus pattern (38 bp):
AACCCTTAAACCCCTAACCCTCTAACCCATGCCCACTT
Found at i:72143848 original size:14 final size:14
Alignment explanation
Indices: 72143825--72143864 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
72143815 CCATAAACCC
72143825 TTAACCCTTAAATA
1 TTAACCCTTAAATA
* *
72143839 TTAACTCTTAAATC
1 TTAACCCTTAAATA
*
72143853 TTAAACCTTAAA
1 TTAACCCTTAAA
72143865 CCCTAAATTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (14 bp):
TTAACCCTTAAATA
Found at i:72143901 original size:7 final size:7
Alignment explanation
Indices: 72143889--72144074 Score: 95
Period size: 7 Copynumber: 25.9 Consensus size: 7
72143879 ACCCAACTCT
72143889 TAAACCA
1 TAAACCA
72143896 TAAACCA
1 TAAACCA
* *
72143903 TAATCCC
1 TAAACCA
72143910 TAAACCCA
1 TAAA-CCA
*
72143918 TAATCCA
1 TAAACCA
*
72143925 TAATCCA
1 TAAACCA
* *
72143932 TAAAACT
1 TAAACCA
**
72143939 TAAAATA
1 TAAACCA
* *
72143946 TTAACTTA
1 TAAAC-CA
72143954 TAAACCA
1 TAAACCA
*
72143961 TAAACCCT
1 TAAA-CCA
*
72143969 TAAACCT
1 TAAACCA
*
72143976 TAAACCC
1 TAAACCA
* *
72143983 CAACCCA
1 TAAACCA
* *
72143990 TAATCCC
1 TAAACCA
72143997 TAAACCCA
1 TAAA-CCA
*
72144005 TAATCCA
1 TAAACCA
*
72144012 TAAACCT
1 TAAACCA
**
72144019 TAAAATA
1 TAAACCA
*
72144026 TTAACTCA
1 TAAAC-CA
72144034 TAAACCA
1 TAAACCA
*
72144041 TAAACCC
1 TAAACCA
72144048 TAAACCA
1 TAAACCA
*
72144055 TATA-CA
1 TAAACCA
72144061 CTAAACCA
1 -TAAACCA
72144069 TAAACC
1 TAAACC
72144075 TTAGACTATA
Statistics
Matches: 134, Mismatches: 38, Indels: 14
0.72 0.20 0.08
Matches are distributed among these distances:
6 2 0.01
7 103 0.77
8 29 0.22
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.23
Consensus pattern (7 bp):
TAAACCA
Found at i:72143917 original size:34 final size:35
Alignment explanation
Indices: 72143851--72143917 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
72143841 AACTCTTAAA
* * *
72143851 TCTTAAACCTTAAACCCTAAATTCCTAAACCCAAC
1 TCTTAAACCATAAACCATAAATCCCTAAACCCAAC
72143886 TCTTAAACCATAAACCAT-AATCCCTAAACCCA
1 TCTTAAACCATAAACCATAAATCCCTAAACCCA
72143918 TAATCCATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 13 0.45
35 16 0.55
ACGTcount: A:0.42, C:0.34, G:0.00, T:0.24
Consensus pattern (35 bp):
TCTTAAACCATAAACCATAAATCCCTAAACCCAAC
Found at i:72143920 original size:15 final size:14
Alignment explanation
Indices: 72143896--72144017 Score: 57
Period size: 15 Copynumber: 8.4 Consensus size: 14
72143886 TCTTAAACCA
72143896 TAAACCATAATCCC
1 TAAACCATAATCCC
*
72143910 TAAACCCATAATCCA
1 TAAA-CCATAATCCC
* ** *
72143925 TAATCCATAAAACT
1 TAAACCATAATCCC
** **
72143939 TAAAATATTAA-CTTA
1 TAAACCA-TAATC-CC
*
72143954 TAAACCATAAACCC
1 TAAACCATAATCCC
* *
72143968 TTAAACCTTAAACCC
1 -TAAACCATAATCCC
* *
72143983 CAACCCATAATCCC
1 TAAACCATAATCCC
*
72143997 TAAACCCATAATCCA
1 TAAA-CCATAATCCC
72144012 TAAACC
1 TAAACC
72144018 TTAAAATATT
Statistics
Matches: 79, Mismatches: 23, Indels: 12
0.69 0.20 0.11
Matches are distributed among these distances:
14 32 0.41
15 47 0.59
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCATAATCCC
Found at i:72143920 original size:22 final size:21
Alignment explanation
Indices: 72143889--72144074 Score: 88
Period size: 22 Copynumber: 8.6 Consensus size: 21
72143879 ACCCAACTCT
*
72143889 TAAACCATAAACCATAATCCC
1 TAAACCATAAACCATAATCCA
*
72143910 TAAACCCATAATCCATAATCCA
1 TAAA-CCATAAACCATAATCCA
* * ** *
72143932 TAAAACTTAAAATATTAA-CTTA
1 TAAACCATAAACCA-TAATC-CA
* * *
72143954 TAAACCATAAACCCTTAAACCT
1 TAAACCATAAA-CCATAATCCA
** * *
72143976 TAAACCCCAACCCATAATCCC
1 TAAACCATAAACCATAATCCA
* * *
72143997 TAAACCCATAATCCATAAACCT
1 TAAA-CCATAAACCATAATCCA
** * *
72144019 TAAAATATTAACTCATAAACCA
1 TAAACCATAAAC-CATAATCCA
* *
72144041 TAAACCCTAAACCAT-ATACA
1 TAAACCATAAACCATAATCCA
72144061 CTAAACCATAAACC
1 -TAAACCATAAACC
72144075 TTAGACTATA
Statistics
Matches: 119, Mismatches: 38, Indels: 16
0.69 0.22 0.09
Matches are distributed among these distances:
20 3 0.03
21 40 0.34
22 75 0.63
23 1 0.01
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.23
Consensus pattern (21 bp):
TAAACCATAAACCATAATCCA
Found at i:72144551 original size:40 final size:40
Alignment explanation
Indices: 72144504--72144583 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
72144494 ATTAATTTGT
*
72144504 GGCATTTTTTAAAAAACGCCGCTAATA-CTCGATATATAGC
1 GGCATTTTTCAAAAAACGCCGCTAA-AGCTCGATATATAGC
* *
72144544 GGCATTTTTCAAAAAACGCTGCTAAAGCTCGATGTATAGC
1 GGCATTTTTCAAAAAACGCCGCTAAAGCTCGATATATAGC
72144584 AGCGTTTTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.03
40 35 0.97
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (40 bp):
GGCATTTTTCAAAAAACGCCGCTAAAGCTCGATATATAGC
Found at i:72144598 original size:40 final size:40
Alignment explanation
Indices: 72144509--72144608 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
72144499 TTTGTGGCAT
* * * *
72144509 TTTTTAAAAAACGCCGCTAATACTCGATATATAGCGGCAT
1 TTTTCAAAAAACGCTGCTAATACTCGATATATAGCAGCAG
*
72144549 TTTTCAAAAAACGCTGCTAA-AGCTCGATGTATAGCAGC-G
1 TTTTCAAAAAACGCTGCTAATA-CTCGATATATAGCAGCAG
* *
72144588 TTTTCGAAAAACACTGCTAAT
1 TTTTCAAAAAACGCTGCTAAT
72144609 GTCACTAAGG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
39 19 0.37
40 32 0.63
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (40 bp):
TTTTCAAAAAACGCTGCTAATACTCGATATATAGCAGCAG
Found at i:72144626 original size:154 final size:154
Alignment explanation
Indices: 72144387--72144981 Score: 791
Period size: 154 Copynumber: 3.9 Consensus size: 154
72144377 AATGTTTTTT
* * * * * * *
72144387 GCGGCATTTTT-AAAAAAGCACCGCTACAGCTAGATCTATAGTGGCGTTTTTCAAAAAGCGCCGC
1 GCGGCATTTTTCAAAAAA-CGCCGCTAAAGCTCGATTTATAGCGGCGTTTTCCAAAAAGC-ACGC
* * * *
72144451 TAATGCCACTAAGGCTCAACAAAAAACGAGGGCATGTTGATGAATTAATTTGTGGCATTTTTTAA
64 TAATGCCACTAAGGCTCAACAAAAAACGACGGCGTGTTGATGAATTAATTTGCGGCGTTTTTTAA
* * *
72144516 AAAACGCCGCTAATACTCGATATATA
129 AAAACACCGCTAATGCTCGATCTATA
* * * *
72144542 GCGGCATTTTTCAAAAAACGCTGCTAAAGCTCGATGTATAGCAGCGTTTTCGAAAAA-CACTGCT
1 GCGGCATTTTTCAAAAAACGCCGCTAAAGCTCGATTTATAGCGGCGTTTTCCAAAAAGCAC-GCT
* * * ** *
72144606 AATGTCACTAAGGCTCAACAAAAAACGAGGGTGTGTTGATGAATTAATTTGTAGCGTTTTTTTAA
65 AATGCCACTAAGGCTCAACAAAAAACGACGGCGTGTTGATGAATTAATTTGCGGCGTTTTTTAAA
72144671 AAACACCGCTAATGCTCGATCTATA
130 AAACACCGCTAATGCTCGATCTATA
* * * * * *
72144696 GCGGCGTTTTTTAAAAAGCGCCGCTAAAGCTCGATTTATAGCTGCATTTTCCAAAAAGCGCGCTA
1 GCGGCATTTTTCAAAAAACGCCGCTAAAGCTCGATTTATAGCGGCGTTTTCCAAAAAGCACGCTA
*
72144761 ATGCCACTAAGGCTCAACAAAAAACGACGGCGTGTTGATGAAATAATTTGCGGCGTTTTTTAAAA
66 ATGCCACTAAGGCTCAACAAAAAACGACGGCGTGTTGATGAATTAATTTGCGGCGTTTTTTAAAA
72144826 AACACCGCTAATGCTC-ATCTATA
131 AACACCGCTAATGCTCGATCTATA
* * * * *
72144849 GCGGCATTTTTCAAAAAGCGTCACTAAAGCTTGATTTATAGCGGCGTTTTCCAAAAAGCGACACT
1 GCGGCATTTTTCAAAAAACGCCGCTAAAGCTCGATTTATAGCGGCGTTTTCCAAAAAGC-ACGCT
* *
72144914 AATGCCACCAAGGCTCAACAAAAAACGACGGCGTGTTGATGAATTATTTTGCGGCGTTTTTTAAA
65 AATGCCACTAAGGCTCAACAAAAAACGACGGCGTGTTGATGAATTAATTTGCGGCGTTTTTTAAA
72144979 AAA
130 AAA
72144982 TGCCGAAAAA
Statistics
Matches: 389, Mismatches: 47, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
153 60 0.15
154 280 0.72
155 43 0.11
156 6 0.02
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (154 bp):
GCGGCATTTTTCAAAAAACGCCGCTAAAGCTCGATTTATAGCGGCGTTTTCCAAAAAGCACGCTA
ATGCCACTAAGGCTCAACAAAAAACGACGGCGTGTTGATGAATTAATTTGCGGCGTTTTTTAAAA
AACACCGCTAATGCTCGATCTATA
Found at i:72144704 original size:40 final size:40
Alignment explanation
Indices: 72144663--72144737 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
72144653 TTTGTAGCGT
*
72144663 TTTTTTAAAAA-CACCGCTAATGCTCGATCTATAGCGGCG
1 TTTTTTAAAAAGCACCGCTAAAGCTCGATCTATAGCGGCG
* *
72144702 TTTTTTAAAAAGCGCCGCTAAAGCTCGATTTATAGC
1 TTTTTTAAAAAGCACCGCTAAAGCTCGATCTATAGC
72144738 TGCATTTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 11 0.34
40 21 0.66
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (40 bp):
TTTTTTAAAAAGCACCGCTAAAGCTCGATCTATAGCGGCG
Found at i:72144752 original size:40 final size:40
Alignment explanation
Indices: 72144676--72144761 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 40
72144666 TTTAAAAACA
* * **
72144676 CCGCTAATGCTCGATCTATAGCGGCGTTTTTTAAAAAGCG
1 CCGCTAAAGCTCGATCTATAGCGGCATTTTCCAAAAAGCG
* *
72144716 CCGCTAAAGCTCGATTTATAGCTGCATTTTCCAAAAAGCG
1 CCGCTAAAGCTCGATCTATAGCGGCATTTTCCAAAAAGCG
72144756 -CGCTAA
1 CCGCTAA
72144762 TGCCACTAAG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 6 0.15
40 34 0.85
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (40 bp):
CCGCTAAAGCTCGATCTATAGCGGCATTTTCCAAAAAGCG
Found at i:72145091 original size:40 final size:40
Alignment explanation
Indices: 72144987--72145121 Score: 162
Period size: 40 Copynumber: 3.4 Consensus size: 40
72144977 AAAAATGCCG
*
72144987 AAAAACGCCGCTAATGCTCGATCTGTAGCGGCACTTTTCT
1 AAAAACGCCGCTAATGCTCGATCTATAGCGGCACTTTTCT
* * * *
72145027 AAAAATGCCACTGATGCTCGATCTATAGCAGCACTTTTCT
1 AAAAACGCCGCTAATGCTCGATCTATAGCGGCACTTTTCT
* * * * *
72145067 AAAAACGCCGCTAATGGTCAATCTATAGTGGCATTTTTTGT
1 AAAAACGCCGCTAATGCTCGATCTATAGCGGCA-CTTTTCT
*
72145108 ACAAACGCCGCTAA
1 AAAAACGCCGCTAA
72145122 AAACACCGCG
Statistics
Matches: 79, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
40 61 0.77
41 18 0.23
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (40 bp):
AAAAACGCCGCTAATGCTCGATCTATAGCGGCACTTTTCT
Found at i:72156665 original size:48 final size:47
Alignment explanation
Indices: 72156540--72156665 Score: 119
Period size: 48 Copynumber: 2.6 Consensus size: 47
72156530 ATGACATTTG
72156540 GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAC
1 GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAC
**** * * * * * *
72156587 CCACATTATGAT-AGCCAGTGGAAGATCATGTTTTGGACATGGCATCGGC
1 GTTGA-TATG-TGTGCTAGTGTAAGACCATGTTTGGGACATGGCATC-AC
*
72156636 GTTGATATGTGTGTTAGTGTAAGACCATGT
1 GTTGATATGTGTGCTAGTGTAAGACCATGT
72156666 CTGTAATGAC
Statistics
Matches: 56, Mismatches: 19, Indels: 7
0.68 0.23 0.09
Matches are distributed among these distances:
47 2 0.04
48 51 0.91
49 3 0.05
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.32
Consensus pattern (47 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCAC
Found at i:72157754 original size:3 final size:3
Alignment explanation
Indices: 72157746--72157796 Score: 84
Period size: 3 Copynumber: 17.0 Consensus size: 3
72157736 GAATGATAAG
* *
72157746 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAC CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
72157794 TAT
1 TAT
72157797 GGTATTGAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:72157850 original size:13 final size:14
Alignment explanation
Indices: 72157831--72157867 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
72157821 TGAATTATTA
72157831 GTGAATATTGATAT
1 GTGAATATTGATAT
*
72157845 -TGAATAGTG-TAT
1 GTGAATATTGATAT
72157857 GTGAATATTGA
1 GTGAATATTGA
72157868 GTGGAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
12 3 0.16
13 16 0.84
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (14 bp):
GTGAATATTGATAT
Found at i:72158212 original size:6 final size:6
Alignment explanation
Indices: 72158197--72158229 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
72158187 GTACTTTGTG
*
72158197 TACTGC TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
72158230 CCTTACGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:72158235 original size:18 final size:18
Alignment explanation
Indices: 72158197--72158235 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
72158187 GTACTTTGTG
**
72158197 TACTGCTACTGTTACTGT
1 TACTGCTACTGTTACCCT
*
72158215 TACTGTTACTGTTACCCT
1 TACTGCTACTGTTACCCT
72158233 TAC
1 TAC
72158236 GGTGTATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.44
Consensus pattern (18 bp):
TACTGCTACTGTTACCCT
Found at i:72165500 original size:29 final size:27
Alignment explanation
Indices: 72165466--72165568 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
72165456 TACTCAATCA
*
72165466 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
72165495 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
72165524 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
72165553 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72165569 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:72167329 original size:3 final size:3
Alignment explanation
Indices: 72167321--72167362 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
72167311 GAATGATAAG
72167321 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
72167363 GGTATTGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:72167416 original size:13 final size:14
Alignment explanation
Indices: 72167397--72167433 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
72167387 TGAATTATTA
72167397 GTGAATATTGATAT
1 GTGAATATTGATAT
*
72167411 -TGAATAGTG-TAT
1 GTGAATATTGATAT
72167423 GTGAATATTGA
1 GTGAATATTGA
72167434 GTAGAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
12 3 0.16
13 16 0.84
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (14 bp):
GTGAATATTGATAT
Found at i:72167774 original size:6 final size:6
Alignment explanation
Indices: 72167763--72167801 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
72167753 GTTCTTTGTG
72167763 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
72167802 CCTTACGGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
TACTGT
Found at i:72167807 original size:18 final size:18
Alignment explanation
Indices: 72167768--72167807 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
72167758 TTGTGTACTG
**
72167768 TTACTGTTACTGTTACTG
1 TTACTGTTACTGTTACCC
72167786 TTACTGTTACTGTTACCC
1 TTACTGTTACTGTTACCC
72167804 TTAC
1 TTAC
72167808 GGTGTATTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.23, G:0.12, T:0.47
Consensus pattern (18 bp):
TTACTGTTACTGTTACCC
Found at i:72167990 original size:18 final size:18
Alignment explanation
Indices: 72167933--72167992 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
72167923 GACTGTTTGC
* *
72167933 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTAT
* *
72167951 TACAGAATAAACGACTGA-
1 TACTGAATAAATGACT-AT
*
72167969 TACTGAATAAATGAATAT
1 TACTGAATAAATGACTAT
72167987 TACTGA
1 TACTGA
72167993 TTAGCCGATT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
17 1 0.03
18 32 0.97
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:72173125 original size:29 final size:28
Alignment explanation
Indices: 72173091--72173193 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
72173081 TACTCAATCA
*
72173091 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
72173120 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
72173149 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
72173178 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72173194 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:72181135 original size:29 final size:28
Alignment explanation
Indices: 72181101--72181203 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
72181091 TACTCAATCA
*
72181101 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
72181130 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
72181159 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
72181188 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72181204 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:72189150 original size:29 final size:28
Alignment explanation
Indices: 72189116--72189218 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
72189106 TACTCAATCA
*
72189116 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
72189145 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
72189174 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
72189203 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72189219 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:72192305 original size:57 final size:58
Alignment explanation
Indices: 72192225--72192357 Score: 137
Period size: 58 Copynumber: 2.3 Consensus size: 58
72192215 ACCAGTCTAA
* * * * * *
72192225 GCTAAATCCTATTTATGACATATGCTCTA-AGGAGTTTGATAT-A-GATTACTCATCCGG
1 GCTAAATCCAATCTATAACATATGCTCGAGAGGA-ATT-ATATCAGGATTACCCATCCGG
* *
72192282 GCTAAATCCAATCTATAAGATATGCTCGAGAGGAATTATATCAGGATTACCCATCTGG
1 GCTAAATCCAATCTATAACATATGCTCGAGAGGAATTATATCAGGATTACCCATCCGG
**
72192340 GCTAAATCCCTTCTATAA
1 GCTAAATCCAATCTATAA
72192358 TGAGGTCAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
56 4 0.06
57 27 0.43
58 32 0.51
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (58 bp):
GCTAAATCCAATCTATAACATATGCTCGAGAGGAATTATATCAGGATTACCCATCCGG
Found at i:72195782 original size:41 final size:40
Alignment explanation
Indices: 72195737--72195898 Score: 143
Period size: 41 Copynumber: 3.9 Consensus size: 40
72195727 TCTTAGTACC
72195737 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACCACT
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGA-CACT
* * *
72195778 GGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-TTATGACACT
1 GGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-GACACT
* * *
72195818 GGCTCTAAAAAGGCCTTCGAAACTAAGCTCGGCTATTAG-CACT
1 GGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--ATTAGACACT
* *
72195861 GGCTCAAAAGCCCTTCCAGACCAGGCTCGGATTTAGAC
1 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGAC
72195899 CCCGATTAGC
Statistics
Matches: 97, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
39 1 0.01
40 18 0.19
41 46 0.47
42 18 0.19
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.20
Consensus pattern (40 bp):
GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACACT
Found at i:72195861 original size:43 final size:42
Alignment explanation
Indices: 72195784--72195876 Score: 104
Period size: 42 Copynumber: 2.2 Consensus size: 42
72195774 CACTGGCTCG
* *
72195784 AAGGCCCTTCGGAACTAAGTCCGGTTATGACACTGGCTCTAAA
1 AAGGCCCTTCGAAACTAAGTCCGGCTATGACACTGGCTC-AAA
*
72195827 AAGG-CCTTCGAAACTAAG-CTCGGCTATTAGCACTGGCTC-AA
1 AAGGCCCTTCGAAACTAAGTC-CGGCTATGA-CACTGGCTCAAA
72195868 AA-GCCCTTC
1 AAGGCCCTTC
72195877 CAGACCAGGC
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
40 1 0.02
41 10 0.23
42 20 0.45
43 13 0.30
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (42 bp):
AAGGCCCTTCGAAACTAAGTCCGGCTATGACACTGGCTCAAA
Found at i:72197798 original size:30 final size:29
Alignment explanation
Indices: 72197704--72197805 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
72197694 TATAGTGAAT
* * *
72197704 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
72197733 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
72197761 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
72197791 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
72197806 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:72204902 original size:40 final size:39
Alignment explanation
Indices: 72204791--72204940 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 39
72204781 TTAATCACGT
* * *
72204791 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
72204831 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
72204871 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
72204911 GCATATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATGCCTTCGGGTCTTAGCCCGGATAT
72204941 CATTCAATTT
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
38 13 0.14
39 11 0.12
40 67 0.74
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:72209962 original size:41 final size:39
Alignment explanation
Indices: 72209917--72210078 Score: 123
Period size: 41 Copynumber: 3.9 Consensus size: 39
72209907 TCTTAGTACC
72209917 GGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACCACT
1 GGCTCAAAAGCCCTTC-AGACCAAGCTCGGATTAGA-CACT
* * * *
72209958 GGCTCGAAGGCCCTTCAGAACTAAG-TCTGG-TTCTGACACT
1 GGCTCAAAAGCCCTTCAG-ACCAAGCTC-GGATT-AGACACT
* *
72209998 GGCTCTAAAAAGCCCTTCAAAACTAAGCTCGGCTATTAG-CACT
1 GGCTC--AAAAGCCCTTC-AGACCAAGCTCGG--ATTAGACACT
* *
72210041 GGCTCCAAAGCCCTTCCAGACCAAGCTCAGATTTAGAC
1 GGCTCAAAAGCCCTT-CAGACCAAGCTCGGA-TTAGAC
72210079 CCCGATTAGC
Statistics
Matches: 96, Mismatches: 12, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
39 1 0.01
40 19 0.20
41 43 0.45
42 18 0.19
43 12 0.12
44 1 0.01
45 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (39 bp):
GGCTCAAAAGCCCTTCAGACCAAGCTCGGATTAGACACT
Found at i:72213115 original size:30 final size:31
Alignment explanation
Indices: 72213050--72213126 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
72213040 TTTAACGGTT
72213050 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
72213081 ACTGGGCCAAAGCCTTTTCATAAATCAT-TC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
72213111 ACTGGG-CGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
72213127 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 9 0.20
30 8 0.18
31 27 0.61
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:72213210 original size:41 final size:42
Alignment explanation
Indices: 72213150--72213240 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 42
72213140 TGGCCTATAG
* ** *
72213150 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
72213192 GCCCATTTC-ATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
72213233 GCCCATTT
1 GCCCATTT
72213241 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 36 0.80
42 9 0.20
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:72214306 original size:26 final size:26
Alignment explanation
Indices: 72214226--72214317 Score: 112
Period size: 27 Copynumber: 3.5 Consensus size: 26
72214216 GGGCATATTC
* * *
72214226 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCTTACAGGGCT-TTACG
*
72214253 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCTTACA-GGGCTTTACG
72214280 GTCACTTTACCTTACAGGGCTTTACG
1 GTCACTTTACCTTACAGGGCTTTACG
**
72214306 GTCTTTTTACCT
1 GTCACTTTACCT
72214318 AATAGGGGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
26 20 0.34
27 34 0.59
28 4 0.07
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (26 bp):
GTCACTTTACCTTACAGGGCTTTACG
Found at i:72214324 original size:26 final size:26
Alignment explanation
Indices: 72214226--72214324 Score: 94
Period size: 26 Copynumber: 3.7 Consensus size: 26
72214216 GGGCATATTC
* *
72214226 GTCATTTTACC-ATACAGGGGTATTACG
1 GTCACTTTACCTA-ACAGGGCT-TTACG
72214253 GTCACTTTACCCT-ACAGGGGCTTTACG
1 GTCACTTTA-CCTAACA-GGGCTTTACG
*
72214280 GTCACTTTACCTTACAGGGCTTTACG
1 GTCACTTTACCTAACAGGGCTTTACG
** *
72214306 GTCTTTTTACCTAATAGGG
1 GTCACTTTACCTAACAGGG
72214325 GTATTTTAGT
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
26 28 0.45
27 28 0.45
28 6 0.10
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (26 bp):
GTCACTTTACCTAACAGGGCTTTACG
Found at i:72214400 original size:27 final size:27
Alignment explanation
Indices: 72214374--72214625 Score: 152
Period size: 27 Copynumber: 9.3 Consensus size: 27
72214364 ATCTACAAAC
*
72214374 CAAGGGTATTTCAGTAATTTTGTAAA-
1 CAAGGGTATTTCAGTAATTTTATAAAT
* *
72214400 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTTC-AGTAA-TTTTATAAA-T
* * *
72214429 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* * ** *
72214456 CAGGGGTGTTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* * * *
72214483 TAAGGGTATTTC-GATAATTTCACAAAC
1 CAAGGGTATTTCAG-TAATTTTATAAAT
** *
72214510 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** * *
72214536 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTCAGTAATTTTATAAAT
* *
72214564 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* *** * *
72214591 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
72214618 CAAGGGTA
1 CAAGGGTA
72214626 AAATAGTAAT
Statistics
Matches: 180, Mismatches: 37, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
26 16 0.09
27 142 0.79
28 8 0.04
29 14 0.08
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTATAAAT
Done.