Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 232 of 433
Found at i:72214477 original size:55 final size:53
Alignment explanation
Indices: 72214346--72214624 Score: 172
Period size: 54 Copynumber: 5.2 Consensus size: 53
72214336 ATTTCATCCT
* * * *
72214346 ACAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAA
1 ACAAGGGTGTTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAACTTTGTAA
* * * * *
72214399 ACAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAA
1 ACAAGGGTGTTT-TGGTAA-TTTTACAAA-TCAAGGGTATTTCAGTAACTTTGTAA
* * **
72214454 ATCAGGGGTGTTTTGGTAATTTTACAAATTAAGGGTATTTC-GATAA-TTTCACAA
1 A-CAAGGGTGTTTTGGTAATTTTACAAATCAAGGGTATTTCAG-TAACTTT-GTAA
* * ** * **
72214508 ACCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTGTTTTGGTAATTTTACAAATC-AAGGGTATTTCAGTAACTTTGTAA
* * ** * ***
72214562 ACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAA-TTCTGTAA
1 A-CAAGGGTGTTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAACTT-TGTAA
72214616 ATCAAGGGT
1 A-CAAGGGT
72214625 AAAATAGTAA
Statistics
Matches: 178, Mismatches: 36, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
53 19 0.11
54 110 0.62
55 38 0.21
56 11 0.06
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (53 bp):
ACAAGGGTGTTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAACTTTGTAA
Found at i:72214522 original size:54 final size:54
Alignment explanation
Indices: 72214347--72214584 Score: 189
Period size: 54 Copynumber: 4.4 Consensus size: 54
72214337 TTTCATCCTA
* * * * ***
72214347 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTC-AGTAATTTTGTAAA-
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGA-TAATTTCACAAAC
* * * * ** *
72214400 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTG-TAACTTT-GTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTTC-GATAA-TTTCACAAAC
* * *
72214456 CAGGGGTGTTTTGGTAATTTTACAAATTAAGGGTATTTCGATAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGATAATTTCACAAAC
* * * *
72214510 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGATAATTTCACAAAC
*
72214564 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
72214585 GTAAATCGAG
Statistics
Matches: 150, Mismatches: 25, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
53 16 0.11
54 91 0.61
55 29 0.19
56 14 0.09
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGATAATTTCACAAAC
Found at i:72214582 original size:81 final size:78
Alignment explanation
Indices: 72214323--72214583 Score: 206
Period size: 81 Copynumber: 3.2 Consensus size: 78
72214313 TACCTAATAG
* ** * * * * **
72214323 GGGTATTTTAGTCATTTCATCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAG
1 GGGTATTTTAGTAATTTCA-CAAACAAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGG
**
72214388 TAATTTTGTAAACAA
64 TAATTTTACAAACAA
* * * * *
72214403 TGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTGTA-AATCAGGGGTGT
1 GGGTATTT-TAGTAA-TTTCACAAA--CAAGGGTATTT-TGGTAA-TTT-TACAAACAGGGGTAT
*
72214465 TTTGGTAATTTTACAAATTAA
59 TTTGGTAATTTTACAAA-CAA
*
72214486 GGGTA-TTTCGATAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GGGTATTTTAG-TAATTTCACAAA-CAAGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTG
72214550 GTAATTTTACAAACCAA
63 GTAATTTTACAAA-CAA
72214567 GGGTATTTTAGTAATTT
1 GGGTATTTTAGTAATTT
72214584 TGTAAATCGA
Statistics
Matches: 140, Mismatches: 27, Indels: 27
0.72 0.14 0.14
Matches are distributed among these distances:
79 2 0.01
80 17 0.12
81 59 0.42
82 47 0.34
83 13 0.09
84 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (78 bp):
GGGTATTTTAGTAATTTCACAAACAAGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTGGTA
ATTTTACAAACAA
Found at i:72214608 original size:54 final size:54
Alignment explanation
Indices: 72214497--72214655 Score: 131
Period size: 54 Copynumber: 2.9 Consensus size: 54
72214487 GGTATTTCGA
* * * * *****
72214497 TAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCGA-GGGTAAAACAG
*
72214551 TAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAG
1 TAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACAG
* ** * *** * *
72214605 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATTGAGGGTAAAA
1 TAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAA
72214656 TGATAATTCT
Statistics
Matches: 84, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
54 82 0.98
55 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (54 bp):
TAATTTTACAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACAG
Found at i:72214625 original size:81 final size:81
Alignment explanation
Indices: 72214550--72214779 Score: 198
Period size: 81 Copynumber: 2.9 Consensus size: 81
72214540 GGGTATTTTG
* ** * *
72214550 GTAATTTTACAAACCAAGGGT-ATTTTAGTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTG
1 GTAATTCTACAAACCAAGGGTAAAATGA-TAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTG
72214613 TAAATCAAGGGTAAAATA
64 TAAATCAAGGGTAAAATA
* ***
72214631 GTAATTCTATAAATTGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
1 GTAATTCTACAAACCAAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
* **
72214696 AATCGAGGGTAAAACG
66 AATCAAGGGTAAAATA
* ** * * * * * * * *
72214712 GTAATTATGTAAATC-GGGGTTAAAACGGTAATTATGTAAATCG-GGGTAAAATGGTAATTCTAT
1 GTAATTCTACAAACCAAGGG-TAAAATGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGT
72214775 AAATC
65 AAATC
72214780 GGGGTACTTT
Statistics
Matches: 124, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
80 25 0.20
81 95 0.77
82 4 0.03
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
AATCAAGGGTAAAATA
Found at i:72214626 original size:27 final size:27
Alignment explanation
Indices: 72214576--72214785 Score: 241
Period size: 27 Copynumber: 7.9 Consensus size: 27
72214566 AGGGTATTTT
*
72214576 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72214603 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72214630 AGTAATTCTATAAATTGAGGGTAAAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72214656 TGATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
72214684 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
72214711 GGTAATTATGTAAATCG-GGGTTAAAAC
1 AGTAATTCTGTAAATCGAGGG-TAAAAC
* * *
72214738 GGTAATTATGTAAATCG-GGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72214764 GGTAATTCTATAAATCG-GGGTA
1 AGTAATTCTGTAAATCGAGGGTA
72214786 CTTTGGTAAT
Statistics
Matches: 166, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
26 29 0.17
27 136 0.82
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:72214821 original size:27 final size:26
Alignment explanation
Indices: 72214791--72214880 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
72214781 GGGTACTTTG
72214791 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
72214818 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
72214845 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAATCGAAG-GTATTTCA
72214872 GTAATTTTA
1 GTAATTTTA
72214881 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.09
27 47 0.87
28 2 0.04
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:72214894 original size:27 final size:27
Alignment explanation
Indices: 72214791--72214895 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
72214781 GGGTACTTTG
* *
72214791 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
72214818 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
72214845 GTATTTTTACAAACTAAGCGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
72214872 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
72214896 CTAAACAGGG
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.03
27 54 0.84
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:72218532 original size:6 final size:6
Alignment explanation
Indices: 72218521--72218649 Score: 115
Period size: 6 Copynumber: 21.3 Consensus size: 6
72218511 AACCAAAATG
* * *
72218521 AGAATC AGAATC AGAATC A-ATAAC AGAATC AGAACC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AGA-ATC AGAATC AGAATC AGAATC AGA-ATC
* *
72218569 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
*
72218618 AGAATC AGTAAT- AGAATC AAAATC AGAATC AG
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AG
72218650 TATTACGTGA
Statistics
Matches: 100, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
5 8 0.08
6 83 0.83
7 7 0.07
8 2 0.02
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:72218634 original size:55 final size:55
Alignment explanation
Indices: 72218550--72218677 Score: 177
Period size: 55 Copynumber: 2.3 Consensus size: 55
72218540 ATAACAGAAT
* * * *
72218550 CAGAACCAGAATCA-ATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGA-ATCAGTAACAGAATCAAAATCAGAATCAGAATTACGTGA
* *
72218605 CAGAATCAGAATCAGAATCAGTAATAGAATCAAAATCAGAATCAGTATTACGTGA
1 CAGAATCAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAGAATTACGTGA
*
72218660 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
72218678 GTGAATACAA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 64 0.98
56 1 0.02
ACGTcount: A:0.48, C:0.15, G:0.16, T:0.20
Consensus pattern (55 bp):
CAGAATCAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAGAATTACGTGA
Found at i:72218651 original size:24 final size:23
Alignment explanation
Indices: 72218500--72218649 Score: 106
Period size: 24 Copynumber: 6.2 Consensus size: 23
72218490 AAGTAAAATT
* * *
72218500 ATCAGAATTGGAACCAAAATGAGA
1 ATCAGAA-TAGAATCAAAATCAGA
72218524 ATCAGAATCAGAATCAATAA-CAGA
1 ATCAGAAT-AGAATCAA-AATCAGA
* * *
72218548 ATCAGAACCAGAATCAATATTAGTA
1 ATCAGAA-TAGAATCAAAATCAG-A
*
72218573 A-CAGAATCAGAATCAGAATCAGA
1 ATCAGAAT-AGAATCAAAATCAGA
* * * *
72218596 ATTAGGTGACAGAATCAGAATCAGA
1 ATCA-G-AATAGAATCAAAATCAGA
72218621 ATCAGTAATAGAATCAAAATCAGA
1 ATCAG-AATAGAATCAAAATCAGA
72218645 ATCAG
1 ATCAG
72218650 TATTACGTGA
Statistics
Matches: 100, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
23 4 0.04
24 72 0.72
25 23 0.23
26 1 0.01
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.19
Consensus pattern (23 bp):
ATCAGAATAGAATCAAAATCAGA
Found at i:72219254 original size:27 final size:26
Alignment explanation
Indices: 72219175--72219257 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
72219165 TTGATCGGTT
* * *
72219175 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
72219201 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
72219228 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
72219255 AAC
1 AAC
72219258 GCTTCCTCTG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:72219486 original size:27 final size:27
Alignment explanation
Indices: 72219456--72219651 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
72219446 GAGGCAAAAT
* * *
72219456 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72219483 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72219510 GGTATTTCTACCCTACAAGGCTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
72219537 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
72219564 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
72219591 AGTTATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
72219618 GAAAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
72219645 AGTAATT
1 GGTAATT
72219652 TCACAATCAA
Statistics
Matches: 141, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:72219528 original size:54 final size:54
Alignment explanation
Indices: 72219456--72219651 Score: 241
Period size: 54 Copynumber: 3.6 Consensus size: 54
72219446 GAGGCAAAAT
* * * *
72219456 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
72219510 GGTATTTCTACCCTACAAGGCTATTTC-GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTC
* * * *
72219564 GGTAATTCTATCCTATAAGGGTATTTCAGTTATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
** * *
72219618 GAAAATTCTACCCTATAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT
72219652 TCACAATCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 120 0.98
55 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:72219600 original size:81 final size:81
Alignment explanation
Indices: 72219458--72219651 Score: 237
Period size: 81 Copynumber: 2.4 Consensus size: 81
72219448 GGCAAAATGG
* * * * *
72219458 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
72219523 TACAAGGCTATTTCGA
66 TACAAGGCTATTTCGA
* * * *
72219539 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGT-TATTCTACC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAT-TTCTACC
* * *
72219603 CTATAGGGGTATTTCGA
65 CTACAAGGCTATTTCGA
* * *
72219620 AAATTCTACCCTATAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
72219652 TCACAATCAA
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 95 0.99
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
TACAAGGCTATTTCGA
Found at i:72219686 original size:27 final size:27
Alignment explanation
Indices: 72219656--72220254 Score: 696
Period size: 27 Copynumber: 22.2 Consensus size: 27
72219646 GTAATTTCAC
* *
72219656 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
72219683 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
72219710 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
72219737 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
72219764 AATTGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
72219791 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
72219818 AATCAAGGGTAAAACGGAAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
72219845 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
72219872 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
72219899 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
72219926 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
72219953 AA-CTAAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
72219980 AATCGAGGGTGAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
72220007 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
72220034 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
72220061 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
72220088 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
72220115 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
72220142 AA-CTGAGGGTAAAACAATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
72220169 AATCGAGGGTAAAGCGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
72220196 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
72220223 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
72220250 AATCG
1 AATCG
72220255 GGAGTACTTT
Statistics
Matches: 492, Mismatches: 64, Indels: 32
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.01
27 478 0.97
28 8 0.02
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:72220271 original size:81 final size:81
Alignment explanation
Indices: 72219656--72220254 Score: 769
Period size: 81 Copynumber: 7.4 Consensus size: 81
72219646 GTAATTTCAC
* * *
72219656 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
*
72219721 AACCAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* * * * * *
72219737 AATCAAGGGTAAAACGGTAATTTTACAAATTGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
*
72219802 AACCAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* * * * * * *
72219818 AATCAAGGGTAAAACGGAAATTTTACAAATCAAGGGTAAAATGGTAATTCTGTAAATTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
*
72219883 AAATAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* *
72219899 AA-CTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTAAGGGT
1 AATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGT
* *
72219963 AAAACGGTAATTTTGTA
65 AAAACAGTAATTCTGTA
* * *
72219980 AATCGAGGGTGAAACGGTAATTCTGTAAA-CTGAGGGTAAAACGATAATTCTGTAAACTGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTGTAAACTGAGGGT
* *
72220044 AAAACGGTAATTTTGTA
65 AAAACAGTAATTCTGTA
* * *
72220061 AATCGAGGGTAAAATGGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGG
1 AATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTGTAAACT-GAGGG
72220124 TAAAACAGTAATTCTGTA
64 TAAAACAGTAATTCTGTA
** * *
72220142 AA-CTGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAGCGGTAATTCTGTAAACTGAGGGT
1 AATC-GAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGT
*
72220206 AAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
*
72220223 AA-CTGAGGGTAAAACGGTAATTCTGTAAATCG
1 AATC-GAGGGTAAAACGGTAATTCTATAAATCG
72220255 GGAGTACTTT
Statistics
Matches: 468, Mismatches: 43, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
80 4 0.01
81 461 0.99
82 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
AAACAGTAATTCTGTA
Found at i:72225389 original size:16 final size:16
Alignment explanation
Indices: 72225364--72225399 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
72225354 GGTAATTCTA
*
72225364 GGCTTGCTTTAAATGT
1 GGCTTACTTTAAATGT
72225380 GGCTTACTTTAAATGT
1 GGCTTACTTTAAATGT
72225396 GGCT
1 GGCT
72225400 CCCAAGATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.19, C:0.14, G:0.25, T:0.42
Consensus pattern (16 bp):
GGCTTACTTTAAATGT
Found at i:72232693 original size:23 final size:22
Alignment explanation
Indices: 72232662--72233089 Score: 319
Period size: 23 Copynumber: 18.7 Consensus size: 22
72232652 AAATAAGTAC
72232662 TTAAACACTTCAATTTACAGCA
1 TTAAACACTTCAATTTACAGCA
72232684 TGTAAACACTTCAATTTACAGCA
1 T-TAAACACTTCAATTTACAGCA
*
72232707 TTCAAACACTTCAATTTGCAGCA
1 TT-AAACACTTCAATTTACAGCA
* *
72232730 CTTTAACA-TCTCAATTAACAGCA
1 -TTAAACACT-TCAATTTACAGCA
* *
72232753 TTTATACACCTCAA-TTACAGCGA
1 -TTAAACACTTCAATTTACAGC-A
* * *
72232776 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTACAGC-A
* * *
72232799 CTAAACACTTCAATTTGCAGTA
1 TTAAACACTTCAATTTACAGCA
* * * *
72232821 CTTAAGCAGTTCAATTTGCAACA
1 -TTAAACACTTCAATTTACAGCA
*
72232844 TTTAAGCACTTCAATTTACAGCA
1 -TTAAACACTTCAATTTACAGCA
*
72232867 TTGAAACACTTTAATTTACAGCA
1 TT-AAACACTTCAATTTACAGCA
* *
72232890 TTCAAACACTTCAGTTTGCAGCA
1 TT-AAACACTTCAATTTACAGCA
*
72232913 CTTTAACACTTCAATTTACAGCA
1 -TTAAACACTTCAATTTACAGCA
*
72232936 TTTAAACACTTCAATTTGCAGCA
1 -TTAAACACTTCAATTTACAGCA
* * *
72232959 CTTTAACA-TCTCAATTAACAACA
1 -TTAAACACT-TCAATTTACAGCA
* *
72232982 TTTATACACCTCAA-TTACAGCA
1 -TTAAACACTTCAATTTACAGCA
* * *
72233004 ATAAA-ACATCTCAATGTCCAGCAA
1 TTAAACAC-T-TCAATTTACAGC-A
* *
72233028 CTAAACACTTCAATTTGCAGCA
1 TTAAACACTTCAATTTACAGCA
* *
72233050 CTTTAACACTTCAATTTACAACA
1 -TTAAACACTTCAATTTACAGCA
72233073 TTTAAACACTTCAATTT
1 -TTAAACACTTCAATTT
72233090 GCTGCACTTT
Statistics
Matches: 320, Mismatches: 66, Indels: 39
0.75 0.16 0.09
Matches are distributed among these distances:
20 2 0.01
21 3 0.01
22 33 0.10
23 269 0.84
24 11 0.03
25 2 0.01
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (22 bp):
TTAAACACTTCAATTTACAGCA
Found at i:72232744 original size:46 final size:46
Alignment explanation
Indices: 72232662--72233134 Score: 428
Period size: 46 Copynumber: 10.3 Consensus size: 46
72232652 AAATAAGTAC
* *
72232662 TTAAACACTTCAATTTACAGCA-TGTAAACA-CTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCACT-TTAACATC-TCAATTTACAGCAT
* *
72232708 TCAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAGCAT
1 TTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTTACAGCAT
* * * ** * * *
72232754 TTATACACCTCAA-TTACAGCGA-TAAAACATCTCAATGTCCAGCAA
1 TTAAACACTTCAATTTGCAGC-ACTTTAACATCTCAATTTACAGCAT
* * * *
72232799 CTAAACACTTCAATTTGCAGTAC-TTAAGCAGT-TCAATTTGCAACAT
1 TTAAACACTTCAATTTGCAGCACTTTAA-CA-TCTCAATTTACAGCAT
* * * *
72232845 TTAAGCACTTCAATTTACAGCA-TTGAAACA-CTTTAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCACTT-TAACATC-TCAATTTACAGCAT
* *
72232891 TCAAACACTTCAGTTTGCAGCACTTTAACA-CTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCACTTTAACATC-TCAATTTACAGCAT
* *
72232937 TTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACAT
1 TTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTTACAGCAT
* * * * ** * * *
72232983 TTATACACCTCAA-TTACAGCAATAAAACATCTCAATGTCCAGCAA
1 TTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTTACAGCAT
* *
72233028 CTAAACACTTCAATTTGCAGCACTTTAACA-CTTCAATTTACAACAT
1 TTAAACACTTCAATTTGCAGCACTTTAACATC-TCAATTTACAGCAT
* * *
72233074 TTAAACACTTCAATTTGCTGCACTTTAACATCTCAATTAACAACAT
1 TTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTTACAGCAT
* *
72233120 TTATACACCTCAATT
1 TTAAACACTTCAATT
72233135 AACATCTCAA
Statistics
Matches: 341, Mismatches: 70, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
45 70 0.21
46 262 0.77
47 9 0.03
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (46 bp):
TTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTTACAGCAT
Found at i:72233062 original size:137 final size:137
Alignment explanation
Indices: 72232800--72233135 Score: 466
Period size: 137 Copynumber: 2.4 Consensus size: 137
72232790 GTCCAGCAAC
* ** *
72232800 TAAACACTTCAATTTGCAGTAC-TTAAGCAGT-TCAATTTGCAACATTTA-AGCACTTCAATTTA
1 TAAACACTTCAATTTGCAGCACTTTAA-CA-TCTCAATTAACAACATTTATA-CACCTCAA-TTA
* * * * * *
72232862 CAGCATTGAAACACTTTAATTTACAGCATTCAAACACTTCAGTTTGCAGCACTTTAACACTTCAA
62 CAGCAATAAAACACTTCAATGTACAGCACTCAAACACTTCAATTTGCAGCACTTTAACACTTCAA
*
72232927 TTTACAGCATT
127 TTTACAACATT
72232938 TAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGC
1 TAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGC
*
72233003 AATAAAACA-TCTCAATGTCCAGCAACT-AAACACTTCAATTTGCAGCACTTTAACACTTCAATT
66 AATAAAACACT-TCAATGTACAGC-ACTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATT
72233066 TACAACATT
129 TACAACATT
*
72233075 TAAACACTTCAATTTGCTGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTA
1 TAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTA
72233136 ACATCTCAAT
Statistics
Matches: 180, Mismatches: 13, Indels: 11
0.88 0.06 0.05
Matches are distributed among these distances:
136 1 0.01
137 127 0.71
138 47 0.26
139 5 0.03
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (137 bp):
TAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGC
AATAAAACACTTCAATGTACAGCACTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTA
CAACATT
Found at i:72233065 original size:229 final size:229
Alignment explanation
Indices: 72232664--72233089 Score: 730
Period size: 229 Copynumber: 1.9 Consensus size: 229
72232654 ATAAGTACTT
72232664 AAACACTTCAATTTACAGCATGTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGC
1 AAACACTTCAATTTACAGCATGTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGC
* *
72232729 ACTTTAACATCTCAATTAACAGCATTTATACACCTCAATTACAGCGATAAAACATCTCAATGTCC
66 ACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCAATAAAACATCTCAATGTCC
* * * *
72232794 AGCAACTAAACACTTCAATTTGCAGTACTTAAGCAGTTCAATTTGCAACATTTAAGCACTTCAAT
131 AGCAACTAAACACTTCAATTTGCAGCACTTAAGCACTTCAATTTACAACATTTAAACACTTCAAT
72232859 TTACAGCATTGAAACACTTTAATTTACAGCATTC
196 TTACAGCATTGAAACACTTTAATTTACAGCATTC
* * * *
72232893 AAACACTTCAGTTTGCAGCACT-TTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAG
1 AAACACTTCAATTTACAGCA-TGTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAG
72232957 CACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCAATAAAACATCTCAATGTC
65 CACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCAATAAAACATCTCAATGTC
72233022 CAGCAACTAAACACTTCAATTTGCAGCACTTTAA-CACTTCAATTTACAACATTTAAACACTTCA
130 CAGCAACTAAACACTTCAATTTGCAGCAC-TTAAGCACTTCAATTTACAACATTTAAACACTTCA
72233086 ATTT
194 ATTT
72233090 GCTGCACTTT
Statistics
Matches: 185, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
229 180 0.97
230 5 0.03
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (229 bp):
AAACACTTCAATTTACAGCATGTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGC
ACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCAATAAAACATCTCAATGTCC
AGCAACTAAACACTTCAATTTGCAGCACTTAAGCACTTCAATTTACAACATTTAAACACTTCAAT
TTACAGCATTGAAACACTTTAATTTACAGCATTC
Found at i:72235160 original size:40 final size:40
Alignment explanation
Indices: 72235105--72235184 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
72235095 GCTTTTAGAA
* * *
72235105 TAGTGTCTGCAAAATGACATTTTAGCATTGCAGTACGGAG
1 TAGTGTCTGCAAAATGACATTTCAGCATTACAGCACGGAG
*
72235145 TAGTGTCTGCAAAATGACGTTTCAGCATTACAGCACGGAG
1 TAGTGTCTGCAAAATGACATTTCAGCATTACAGCACGGAG
72235185 ATCCTTCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (40 bp):
TAGTGTCTGCAAAATGACATTTCAGCATTACAGCACGGAG
Found at i:72237200 original size:6 final size:7
Alignment explanation
Indices: 72237167--72237221 Score: 58
Period size: 7 Copynumber: 7.6 Consensus size: 7
72237157 AATATTAAAA
72237167 TTTTAAGT
1 TTTTAA-T
*
72237175 TCTTTATT
1 T-TTTAAT
*
72237183 TTTTATTT
1 TTTTA-AT
72237191 TTTTAA-
1 TTTTAAT
72237197 TTTTAAT
1 TTTTAAT
72237204 TTTTAAT
1 TTTTAAT
72237211 TTTTAAT
1 TTTTAAT
72237218 TTTT
1 TTTT
72237222 TTGAAGATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
6 6 0.14
7 22 0.52
8 10 0.24
9 4 0.10
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (7 bp):
TTTTAAT
Found at i:72237201 original size:30 final size:29
Alignment explanation
Indices: 72237165--72237223 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
72237155 TAAATATTAA
*
72237165 AATTTTAAGTTCTTT-ATTTTTTATTTTTTT
1 AATTTTAA-TT-TTTAATTTTTAATTTTTTT
72237195 AATTTTAATTTTTAATTTTTAATTTTTTT
1 AATTTTAATTTTTAATTTTTAATTTTTTT
72237224 GAAGATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 3 0.11
29 16 0.59
30 8 0.30
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (29 bp):
AATTTTAATTTTTAATTTTTAATTTTTTT
Found at i:72237704 original size:7 final size:7
Alignment explanation
Indices: 72237692--72237730 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
72237682 AATTGCACAC
72237692 TAAACCT
1 TAAACCT
*
72237699 TAAACCC
1 TAAACCT
72237706 TAAACCT
1 TAAACCT
* *
72237713 TAAATCA
1 TAAACCT
72237720 TAAACCT
1 TAAACCT
72237727 TAAA
1 TAAA
72237731 ATAGTAACTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (7 bp):
TAAACCT
Found at i:72237710 original size:14 final size:14
Alignment explanation
Indices: 72237691--72237730 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
72237681 CAATTGCACA
72237691 CTAAACCTTAAACC
1 CTAAACCTTAAACC
*
72237705 CTAAACCTTAAATC
1 CTAAACCTTAAACC
*
72237719 ATAAACCTTAAA
1 CTAAACCTTAAA
72237731 ATAGTAACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (14 bp):
CTAAACCTTAAACC
Found at i:72237783 original size:14 final size:14
Alignment explanation
Indices: 72237742--72237793 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
72237732 TAGTAACTCA
*
72237742 TAAACCTTAAACCC
1 TAAACCGTAAACCC
* * *
72237756 TTAACCATATACCC
1 TAAACCGTAAACCC
72237770 TAAACCGTAAACCC
1 TAAACCGTAAACCC
*
72237784 TAAACTGTAA
1 TAAACCGTAA
72237794 TCATAATTAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.42, C:0.31, G:0.04, T:0.23
Consensus pattern (14 bp):
TAAACCGTAAACCC
Found at i:72237918 original size:7 final size:7
Alignment explanation
Indices: 72237894--72238060 Score: 54
Period size: 7 Copynumber: 23.6 Consensus size: 7
72237884 ATCTAATCCT
72237894 TAAACCCC
1 TAAA-CCC
* *
72237902 TAATCAC
1 TAAACCC
72237909 TAAACCC
1 TAAACCC
*
72237916 TAAATCC
1 TAAACCC
* *
72237923 TAAAACA
1 TAAACCC
*
72237930 TAAACCAT
1 TAAACC-C
*
72237938 TAAA-CT
1 TAAACCC
*
72237944 TGAACCCC
1 T-AAACCC
*
72237952 T-AACTC
1 TAAACCC
*
72237958 TTAACCC
1 TAAACCC
*
72237965 TTAACCC
1 TAAACCC
*
72237972 TTAACCC
1 TAAACCC
*
72237979 -CAACCC
1 TAAACCC
*
72237985 TTAAACCT
1 -TAAACCC
72237993 TAAACCC
1 TAAACCC
*
72238000 -CAACCC
1 TAAACCC
*
72238006 TTAAACCA
1 -TAAACCC
*
72238014 TAAACCA
1 TAAACCC
*
72238021 TAAACCA
1 TAAACCC
*
72238028 TAATCCC
1 TAAACCC
72238035 TAAACCC
1 TAAACCC
* *
72238042 ATAATCCA
1 -TAAACCC
*
72238050 TAAACCT
1 TAAACCC
72238057 TAAA
1 TAAA
72238061 ATAGTAACTC
Statistics
Matches: 122, Mismatches: 28, Indels: 19
0.72 0.17 0.11
Matches are distributed among these distances:
6 16 0.13
7 84 0.69
8 22 0.18
ACGTcount: A:0.43, C:0.35, G:0.01, T:0.22
Consensus pattern (7 bp):
TAAACCC
Found at i:72237963 original size:14 final size:14
Alignment explanation
Indices: 72237946--72237988 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
72237936 ATTAAACTTG
*
72237946 AACCCCTAACTCTT
1 AACCCCTAACCCTT
*
72237960 AACCCTTAACCCTT
1 AACCCCTAACCCTT
72237974 AACCCC-AACCCTT
1 AACCCCTAACCCTT
72237987 AA
1 AA
72237989 ACCTTAAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 9 0.35
14 17 0.65
ACGTcount: A:0.33, C:0.44, G:0.00, T:0.23
Consensus pattern (14 bp):
AACCCCTAACCCTT
Found at i:72237965 original size:13 final size:13
Alignment explanation
Indices: 72237949--72237988 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
72237939 AAACTTGAAC
*
72237949 CCCTAACTCTTAA
1 CCCTAACCCTTAA
72237962 CCCTTAACCCTTAA
1 CCC-TAACCCTTAA
*
72237976 CCCCAACCCTTAA
1 CCCTAACCCTTAA
72237989 ACCTTAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.30, C:0.45, G:0.00, T:0.25
Consensus pattern (13 bp):
CCCTAACCCTTAA
Found at i:72237983 original size:20 final size:21
Alignment explanation
Indices: 72237960--72238019 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
72237950 CCTAACTCTT
*
72237960 AACCCTTAACCCTT-AACCCC
1 AACCCTTAAACCTTAAACCCC
72237980 AACCCTTAAACCTTAAACCCC
1 AACCCTTAAACCTTAAACCCC
*
72238001 AACCCTTAAACCATAAACC
1 AACCCTTAAACCTTAAACC
72238020 ATAAACCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
20 13 0.35
21 24 0.65
ACGTcount: A:0.38, C:0.43, G:0.00, T:0.18
Consensus pattern (21 bp):
AACCCTTAAACCTTAAACCCC
Found at i:72238045 original size:15 final size:14
Alignment explanation
Indices: 72238007--72238055 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
72237997 CCCCAACCCT
*
72238007 TAAACCATAAACCA
1 TAAACCATAATCCA
*
72238021 TAAACCATAATCCC
1 TAAACCATAATCCA
72238035 TAAACCCATAATCCA
1 TAAA-CCATAATCCA
72238050 TAAACC
1 TAAACC
72238056 TTAAAATAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
14 18 0.58
15 13 0.42
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:72239555 original size:40 final size:40
Alignment explanation
Indices: 72239447--72239574 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 40
72239437 TCTTTGGAAT
* * * *
72239447 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCAGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
72239486 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
72239526 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
72239566 TTAGCCCGG
1 TTAGCCCGG
72239575 GTATCATTCA
Statistics
Matches: 70, Mismatches: 18, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
39 3 0.04
40 67 0.96
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:72247650 original size:40 final size:40
Alignment explanation
Indices: 72247601--72247768 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
72247591 TCTTCGGAAT
* * *
72247601 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
72247640 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
72247680 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
72247720 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
72247760 TTAGCCCGG
1 TTAGCCCGG
72247769 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:72249757 original size:14 final size:14
Alignment explanation
Indices: 72249732--72249775 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
72249722 GGCTGTCACA
*
72249732 AAACCCTTAACCAT
1 AAACCCTAAACCAT
*
72249746 ACACCCTAAACCAT
1 AAACCCTAAACCAT
*
72249760 AAACCCTAAACTAT
1 AAACCCTAAACCAT
72249774 AA
1 AA
72249776 TGATAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.48, C:0.34, G:0.00, T:0.18
Consensus pattern (14 bp):
AAACCCTAAACCAT
Found at i:72250318 original size:39 final size:39
Alignment explanation
Indices: 72250270--72250351 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
72250260 ATAGCAGCGT
* *
72250270 TTTTTAAAAAGCACCGCTAATGCTCGATCTTTAGCGGCA
1 TTTTCAAAAAGCACCACTAATGCTCGATCTTTAGCGGCA
* *
72250309 TTTTCAAAAAGCCCCACTAATGCTCGATCTTTAGCGGTA
1 TTTTCAAAAAGCACCACTAATGCTCGATCTTTAGCGGCA
72250348 TTTT
1 TTTT
72250352 TCATTAAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (39 bp):
TTTTCAAAAAGCACCACTAATGCTCGATCTTTAGCGGCA
Found at i:72258704 original size:2 final size:2
Alignment explanation
Indices: 72258697--72258729 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
72258687 TCGATCGGAG
72258697 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
72258730 GTACGCACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72258852 original size:29 final size:29
Alignment explanation
Indices: 72258820--72258892 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
72258810 CTTCGAGCTC
72258820 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
72258849 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
72258878 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
72258893 ATCTCGTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:72267614 original size:28 final size:28
Alignment explanation
Indices: 72267572--72267632 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
72267562 AATGACCAAA
* *
72267572 ATACCCCTGAGGGGTA-AAACTTACTATT
1 ATACCCCTAAGGGGTAGAAA-TGACTATT
* *
72267600 CTACCCCTAATGGGTAGAAATGACTATT
1 ATACCCCTAAGGGGTAGAAATGACTATT
72267628 ATACC
1 ATACC
72267633 TTAGAAGTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
28 24 0.89
29 3 0.11
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (28 bp):
ATACCCCTAAGGGGTAGAAATGACTATT
Found at i:72268035 original size:33 final size:33
Alignment explanation
Indices: 72267988--72268092 Score: 147
Period size: 33 Copynumber: 3.2 Consensus size: 33
72267978 ATAGGCCTAC
* *
72267988 ACTGTTACTACATAGGGCTTAGGCCTAGACTGT
1 ACTGTTACTGCATAGGGCTCAGGCCTAGACTGT
*
72268021 ACTGTTACTGCATAGGGCTGAGGCCTAGACTGT
1 ACTGTTACTGCATAGGGCTCAGGCCTAGACTGT
* * *
72268054 ACTGTTATTGAATAGGGCTCAGGCCTAGACCGTT
1 ACTGTTACTGCATAGGGCTCAGGCCTAGACTG-T
72268088 ACTGT
1 ACTGT
72268093 ATGCACTGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
33 59 0.91
34 6 0.09
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (33 bp):
ACTGTTACTGCATAGGGCTCAGGCCTAGACTGT
Found at i:72268053 original size:28 final size:28
Alignment explanation
Indices: 72267980--72268057 Score: 77
Period size: 33 Copynumber: 2.6 Consensus size: 28
72267970 TTTTGGGCAT
* * *
72267980 AGGCCTACACTGTTACTACATAGGGCTT
1 AGGCCTAGACTGTTACTGCATAGGGCTG
72268008 AGGCCTAGACTGTACTGTTACTGCATAGGGCTG
1 AGGCCT--A--G-ACTGTTACTGCATAGGGCTG
72268041 AGGCCTAGACTG-TACTG
1 AGGCCTAGACTGTTACTG
72268058 TTATTGAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
27 5 0.12
28 10 0.24
29 1 0.02
30 1 0.02
31 1 0.02
33 24 0.57
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGCCTAGACTGTTACTGCATAGGGCTG
Found at i:72274820 original size:20 final size:23
Alignment explanation
Indices: 72274777--72274820 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
72274767 TTAGGCGTTA
72274777 GAATTGGCTTGGTTATAGTGTTT
1 GAATTGGCTTGGTTATAGTGTTT
72274800 GAATTGGC-TGG-TATA-TGTTT
1 GAATTGGCTTGGTTATAGTGTTT
72274820 G
1 G
72274821 TGTGACAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.29
21 4 0.19
22 3 0.14
23 8 0.38
ACGTcount: A:0.18, C:0.05, G:0.32, T:0.45
Consensus pattern (23 bp):
GAATTGGCTTGGTTATAGTGTTT
Found at i:72276920 original size:40 final size:40
Alignment explanation
Indices: 72276865--72277132 Score: 394
Period size: 40 Copynumber: 6.7 Consensus size: 40
72276855 TAATTGAGGA
* *
72276865 TTATATCCAGGTTAAGTTCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
* *
72276905 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
*
72276945 TTATATCTGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
* * * * *
72276985 TTAAATCCGGGTTAAATCCCGAAGGCATTCGTGCTGGTCG
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
72277025 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
* * * *
72277065 TTATATCCGGGCCAAGTTTCGAAGGCACTCGTACTGG-TG
1 TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
*
72277104 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTTCCGAAGGCATT
72277133 TGTGTTTGGA
Statistics
Matches: 204, Mismatches: 24, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
39 27 0.13
40 177 0.87
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (40 bp):
TTATATCCGGGCTAAGTTCCGAAGGCATTCGTGCTGGTTG
Found at i:72284148 original size:47 final size:46
Alignment explanation
Indices: 72283951--72284217 Score: 195
Period size: 47 Copynumber: 5.7 Consensus size: 46
72283941 GATAAATTGT
* * * * * *
72283951 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCATGT
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGGCACT-ATCTCTGTA-GC
* * * *
72284001 TGATGCATGTCCCAGACATGTCTTACACTAGCAC-AACTCT-TAGC
1 CGATGCATGTCCCAAACATGTCTTACACTGGCACTATCTCTGTAGC
* *
72284045 CGATGCGTGTCCCAGACATGTCTTACACTGG--CTATCTCTGTCGAGGC
1 CGATGCATGTCCCAAACATGTCTTACACTGGCACTATCTCTGT--A-GC
* * *
72284092 CAATACATGTCCCAAACATGTCTTACTCTGGCACTTATCTCTGTA-C
1 CGATGCATGTCCCAAACATGTCTTACACTGGCAC-TATCTCTGTAGC
* ** *
72284138 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-AATGTGGC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGGCACT-ATCTCTGTAGC
* **
72284186 CGAAGCATGTCCCGGACATGTCTTACACTGGC
1 CGATGCATGTCCCAAACATGTCTTACACTGGC
72284218 GCACAAATCA
Statistics
Matches: 178, Mismatches: 27, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
42 1 0.01
43 5 0.03
44 30 0.17
45 1 0.01
46 21 0.12
47 58 0.33
48 34 0.19
49 15 0.08
50 13 0.07
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAAACATGTCTTACACTGGCACTATCTCTGTAGC
Found at i:72284196 original size:94 final size:92
Alignment explanation
Indices: 72283951--72284217 Score: 278
Period size: 94 Copynumber: 2.9 Consensus size: 92
72283941 GATAAATTGT
** *
72283951 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCAT-GTTGATGCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATG--TGGCCGAAGCATGTCCCA
*
72284015 GACATGTCTTACACTAGCACAACTCTTAGC
63 GACATGTCTTACACTGGCACAACTCTTAGC
* * * *
72284045 CGATG-CGTGTCCCAGACAT-GTCTTACACTGGCTATCTC-T-GTCGAGGCC-AATACATGTCCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAAT-GTGGCCGAA-GCATGTCCC
* * *
72284105 AAACATGTCTTACTCTGGCACTTATCTCTGTA-C
62 AGACATGTCTTACACTGGCAC--AACTCT-TAGC
* *
72284138 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCGGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGAC
72284203 ATGTCTTACACTGGC
66 ATGTCTTACACTGGC
72284218 GCACAAATCA
Statistics
Matches: 141, Mismatches: 19, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
90 1 0.01
91 28 0.20
92 14 0.10
93 29 0.21
94 53 0.38
95 16 0.11
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (92 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGAC
ATGTCTTACACTGGCACAACTCTTAGC
Found at i:72290673 original size:35 final size:35
Alignment explanation
Indices: 72290634--72290704 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
72290624 TTTAGGATCA
* *
72290634 CATATCTTTGAAGATCTCCTT-CCATATTTGCCAAG
1 CATATCTTTAAAGAT-TACTTCCCATATTTGCCAAG
72290669 CATATCTTTAAAGATTACTTCCCATATTTGCCAAG
1 CATATCTTTAAAGATTACTTCCCATATTTGCCAAG
72290704 C
1 C
72290705 TCCGGAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 4 0.12
35 29 0.88
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (35 bp):
CATATCTTTAAAGATTACTTCCCATATTTGCCAAG
Found at i:72296017 original size:49 final size:49
Alignment explanation
Indices: 72295874--72296137 Score: 414
Period size: 49 Copynumber: 5.5 Consensus size: 49
72295864 TTAGGATTTT
* *
72295874 ATGTGATGAATGTGAACA-TG--CGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATGTATATGTGATAAGGCCGAATGGCCA
72295921 ATGTGATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
72295968 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
72296017 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
* * *
72296066 ATGTGATGAATGTGAAAGTATATATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
*
72296115 ATGTGATGGAA-GTGGAAGTGTAT
1 ATGTGAT-GAATGTGAAAGTGTAT
72296138 AACTGTGATA
Statistics
Matches: 204, Mismatches: 7, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
46 1 0.00
47 64 0.31
49 136 0.67
50 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
Found at i:72297903 original size:24 final size:24
Alignment explanation
Indices: 72297876--72297927 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
72297866 CGATCGAGGT
72297876 AAACGCAAGGTTTCGGAATAACCG
1 AAACGCAAGGTTTCGGAATAACCG
72297900 AAACGCAAGGTTTCGGAATAACCG
1 AAACGCAAGGTTTCGGAATAACCG
72297924 AAAC
1 AAAC
72297928 ACAACTCCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.15
Consensus pattern (24 bp):
AAACGCAAGGTTTCGGAATAACCG
Found at i:72309999 original size:15 final size:16
Alignment explanation
Indices: 72309981--72310023 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
72309971 GGCAAATCCT
72309981 GAAAAG-TGAAATGCC
1 GAAAAGCTGAAATGCC
*
72309996 GAAAAGTTGAAATGCC
1 GAAAAGCTGAAATGCC
*
72310012 AAAAAGCTGAAA
1 GAAAAGCTGAAA
72310024 GTTTAGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.51, C:0.12, G:0.23, T:0.14
Consensus pattern (16 bp):
GAAAAGCTGAAATGCC
Found at i:72310346 original size:28 final size:29
Alignment explanation
Indices: 72310237--72310358 Score: 174
Period size: 29 Copynumber: 4.2 Consensus size: 29
72310227 AGCATGTATC
*
72310237 TGAATGTGATTTGGGCCTAATAGGCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
*
72310266 TGAATGTGATTTGGGCCTAATGGTCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
**
72310295 CAAATGTGATTTGGGCCTAATGGGCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
* *
72310324 TGAATGAGA-TTGGGCCTATTGGGCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
*
72310352 TGCATGT
1 TGAATGT
72310359 ATGTAGACTT
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 23 0.28
29 59 0.72
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (29 bp):
TGAATGTGATTTGGGCCTAATGGGCCATA
Found at i:72313128 original size:28 final size:29
Alignment explanation
Indices: 72313083--72313144 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 29
72313073 ATCAATGCTT
**
72313083 ACTTGATGTACATTTGAATTATGTGACTA
1 ACTTGATGTACACGTGAATTATGTGACTA
72313112 ACTT-ATGTACACGTGAATTATGTGACTA
1 ACTTGATGTACACGTGAATTATGTGACTA
72313140 ACTTG
1 ACTTG
72313145 CTTATTTGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 26 0.87
29 4 0.13
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.39
Consensus pattern (29 bp):
ACTTGATGTACACGTGAATTATGTGACTA
Found at i:72313669 original size:20 final size:23
Alignment explanation
Indices: 72313625--72313670 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
72313615 TGTTAGGTGC
72313625 TTGAATTGGCTTGGTTATAATGT
1 TTGAATTGGCTTGGTTATAATGT
72313648 TTGAATTGGC-TGG-TAT-ATGT
1 TTGAATTGGCTTGGTTATAATGT
72313668 TTG
1 TTG
72313671 CAAGTATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.30
21 3 0.13
22 3 0.13
23 10 0.43
ACGTcount: A:0.20, C:0.04, G:0.28, T:0.48
Consensus pattern (23 bp):
TTGAATTGGCTTGGTTATAATGT
Found at i:72326423 original size:49 final size:49
Alignment explanation
Indices: 72326296--72326602 Score: 478
Period size: 49 Copynumber: 6.3 Consensus size: 49
72326286 GCCTTCGGGA
* * * * * *
72326296 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72326343 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72326390 CTTATCACATATATATACACCTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72326439 CTTATCACATATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72326488 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72326537 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72326586 CTTATCACATATATATA
1 CTTATCACATATATATA
72326603 TCTCATACAT
Statistics
Matches: 240, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 45 0.19
49 194 0.81
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72332774 original size:26 final size:21
Alignment explanation
Indices: 72332726--72332765 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
72332716 TTTGAGAATA
72332726 AGCCAAATGAAATATCTAATG
1 AGCCAAATGAAATATCTAATG
72332747 AGCCAAATGAAATATCTAA
1 AGCCAAATGAAATATCTAA
72332766 CTCTCTGAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.15, G:0.12, T:0.23
Consensus pattern (21 bp):
AGCCAAATGAAATATCTAATG
Found at i:72334294 original size:28 final size:28
Alignment explanation
Indices: 72334260--72334331 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
72334250 TACTCAATGC
* *
72334260 CTCGCACACTAAGTGCCATACTTGAAAT
1 CTCGCACACTAAGTGCCACACTCGAAAT
* * *
72334288 CTTGCACACTAAGTACCACACTCGATAT
1 CTCGCACACTAAGTGCCACACTCGAAAT
72334316 CTCGCACACTAAGTGC
1 CTCGCACACTAAGTGC
72334332 TATATATAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.31, C:0.32, G:0.14, T:0.24
Consensus pattern (28 bp):
CTCGCACACTAAGTGCCACACTCGAAAT
Found at i:72334377 original size:40 final size:40
Alignment explanation
Indices: 72334317--72334413 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
72334307 ACTCGATATC
* **
72334317 TCGCACACTAAGTGCTATATATAGTTGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAA
* * *
72334357 TCGCACACTAAGTGCCATATATAGCCGAAGTTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAA
72334397 TCGCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
72334414 CAAATTGACA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAAA
Found at i:72342704 original size:24 final size:24
Alignment explanation
Indices: 72342659--72342705 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
72342649 TATATATATC
72342659 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
72342683 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
72342706 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:72343510 original size:5 final size:5
Alignment explanation
Indices: 72343500--72343541 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
72343490 TTTTATTATT
*
72343500 ATATA ATAT- A-ATA ATATA ATAAA ATATA ATATA ATAT- ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
72343542 CTTAATTCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 2 0.06
4 6 0.19
5 24 0.75
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:72343515 original size:8 final size:8
Alignment explanation
Indices: 72343502--72343541 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
72343492 TTATTATTAT
72343502 ATAATATA
1 ATAATATA
72343510 ATAATATA
1 ATAATATA
*
72343518 ATAAAAT-
1 ATAATATA
72343525 ATAATATA
1 ATAATATA
72343533 ATATATATA
1 ATA-ATATA
72343542 CTTAATTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 6 0.21
8 17 0.61
9 5 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATATA
Found at i:72345109 original size:14 final size:14
Alignment explanation
Indices: 72345073--72345111 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
72345063 TTGTTTCACT
*
72345073 GAAAATGACTTCTA
1 GAAAATGATTTCTA
*
72345087 GAAAATGATTTCTG
1 GAAAATGATTTCTA
72345101 GAAAATGATTT
1 GAAAATGATTT
72345112 ACTTTTTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:72346560 original size:30 final size:30
Alignment explanation
Indices: 72346524--72346585 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
72346514 CAAGTAGCCG
72346524 AAGCTAGTTTAAACCGCACACTTAGTGCCA
1 AAGCTAGTTTAAACCGCACACTTAGTGCCA
*
72346554 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAACCGCACACTTAGTGCCA
72346584 AA
1 AA
72346586 ACTTCCGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (30 bp):
AAGCTAGTTTAAACCGCACACTTAGTGCCA
Found at i:72348146 original size:16 final size:16
Alignment explanation
Indices: 72348115--72348151 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
72348105 AAGTGAATAA
72348115 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
72348131 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
72348147 TATTA
1 TATTA
72348152 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:72358114 original size:43 final size:43
Alignment explanation
Indices: 72358061--72358226 Score: 192
Period size: 43 Copynumber: 3.9 Consensus size: 43
72358051 GTTATCGAGA
* * * *
72358061 TGTGAATACGTGTAAGACCATCTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
72358104 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * *
72358147 TATGATTTCATGTAAGACCCTGTCTGGGACAGTGGTATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
72358189 ATGTGATAACATGTAAGACCATATCTGGGA-TTTGGCAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
72358227 TGTGTGAGCT
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
42 7 0.07
43 98 0.93
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:72365574 original size:40 final size:39
Alignment explanation
Indices: 72365409--72365592 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
72365399 AAATTGAATG
* * *
72365409 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
72365449 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
72365489 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
72365529 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
72365568 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
72365593 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:72365617 original size:80 final size:81
Alignment explanation
Indices: 72365449--72365637 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
72365439 GCTGGAAATT
* * * *
72365449 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
72365514 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
72365530 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
72365593 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
72365609 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
72365638 ATCAAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:72372546 original size:21 final size:21
Alignment explanation
Indices: 72372522--72372570 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
72372512 AAAACAGGGC
* *
72372522 ACACGTCCGTGTGGAAGGGTA
1 ACACGCCCGTGTGGAAGGATA
*
72372543 ACACGCCCGTGTGGGAGGATA
1 ACACGCCCGTGTGGAAGGATA
72372564 ACACGCC
1 ACACGCC
72372571 TGTGCCCCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.27, G:0.35, T:0.14
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAGGATA
Found at i:72373789 original size:47 final size:46
Alignment explanation
Indices: 72373731--72373858 Score: 123
Period size: 47 Copynumber: 2.7 Consensus size: 46
72373721 TCATCTCTTA
* * * *
72373731 GCCGATACATGTCCCAGACATGTCTTACACTAGCCCTCGT-CTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATAAT-AAG
* * * * * *
72373777 GTCGATTGCATGTCCCAGACGTGGTCTTAGACTGGCTCTCATAATACG
1 GCCGA-TGCATGTCCCAGACAT-GTCTTACACTAGCCCTCATAATAAG
*
72373825 GCCGATGCATGTCCGAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
72373859 TCACACAAGT
Statistics
Matches: 64, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
46 15 0.23
47 28 0.44
48 20 0.31
49 1 0.02
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCATAATAAG
Found at i:72379901 original size:22 final size:21
Alignment explanation
Indices: 72379841--72379891 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
72379831 AAATTGTTTC
* *
72379841 TTAAAAATAAAAATCGTACTTTT
1 TTAAAAATATAAAT-ATA-TTTT
*
72379864 TTAAAAATATATATATATTTT
1 TTAAAAATATAAATATATTTT
72379885 TTAAAAA
1 TTAAAAA
72379892 GTAAGAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.44
22 2 0.08
23 12 0.48
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (21 bp):
TTAAAAATATAAATATATTTT
Found at i:72379968 original size:18 final size:18
Alignment explanation
Indices: 72379929--72379968 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
72379919 TTAAAAATAA
* * *
72379929 AAAAATGTAAAATATTTG
1 AAAAATGTAAAAAAGTTC
72379947 AAAAATGTAAAAAAGTTC
1 AAAAATGTAAAAAAGTTC
72379965 AAAA
1 AAAA
72379969 TTAAATGTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (18 bp):
AAAAATGTAAAAAAGTTC
Found at i:72383849 original size:93 final size:93
Alignment explanation
Indices: 72383690--72383861 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
72383680 GCCCATAAGT
* * *
72383690 GAACTCCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72383755 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
72383783 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72383848 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72383862 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72383857 original size:46 final size:46
Alignment explanation
Indices: 72383682--72383857 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
72383672 TGTAACCCGC
* * * * *
72383682 CCATAAGTGAACTCCGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
72383728 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
72383778 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
72383821 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72383858 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:72383876 original size:46 final size:46
Alignment explanation
Indices: 72383733--72383876 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 46
72383723 CGCATCCATG
* * *
72383733 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* * *
72383781 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
*
72383826 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
72383872 AGTGA
1 AGTGA
72383877 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 34 0.44
47 29 0.38
48 5 0.06
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:72385223 original size:42 final size:44
Alignment explanation
Indices: 72385162--72385259 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 44
72385152 GATTTGAGAT
* * *
72385162 TTACGTGTAAGA-TCATGTCTGGGACA-TCGGCATCG-TGTTTGA
1 TTACATGTAAGACTCATGTCTAGGACAGT-GGCATCGATATTTGA
* *
72385204 TTTCATGTAAGACTC-TGTCTAGGATAGTGGCATCGATATTTGA
1 TTACATGTAAGACTCATGTCTAGGACAGTGGCATCGATATTTGA
72385247 TTACATGTAAGAC
1 TTACATGTAAGAC
72385260 CAAGTTTGGG
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
42 26 0.55
43 21 0.45
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (44 bp):
TTACATGTAAGACTCATGTCTAGGACAGTGGCATCGATATTTGA
Found at i:72391775 original size:52 final size:52
Alignment explanation
Indices: 72391718--72391821 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
72391708 CCAATCAAAA
72391718 GATAGTCTTTTGCAAGTAGAAGTCAATTATATCTTTGATTCCTTTTCACCTT
1 GATAGTCTTTTGCAAGTAGAAGTCAATTATATCTTTGATTCCTTTTCACCTT
* * *
72391770 GATAGTCTTTTGCGAGTGGCAGTCAATTATATCTTTGATTCCTTTTCACCTT
1 GATAGTCTTTTGCAAGTAGAAGTCAATTATATCTTTGATTCCTTTTCACCTT
72391822 TTCCATCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.44
Consensus pattern (52 bp):
GATAGTCTTTTGCAAGTAGAAGTCAATTATATCTTTGATTCCTTTTCACCTT
Found at i:72392104 original size:22 final size:23
Alignment explanation
Indices: 72392079--72392122 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
72392069 TTATAATTTA
*
72392079 TACATTATAATT-TTTTATTTCC
1 TACATAATAATTATTTTATTTCC
72392101 TACATAATAATTAATTTTATTT
1 TACATAATAATT-ATTTTATTT
72392123 TTATGATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
24 8 0.42
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (23 bp):
TACATAATAATTATTTTATTTCC
Found at i:72396187 original size:50 final size:50
Alignment explanation
Indices: 72396115--72396345 Score: 236
Period size: 46 Copynumber: 4.9 Consensus size: 50
72396105 ATAGGGCATA
*
72396115 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCC
* *
72396165 ATGCCGATGCCATGTCCTAGACATGGTCTTACACT-G---ACACATCT-C
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCC
* * *
72396210 GTAGCCGATG-CATGTCCCATACAT-GTCTTACACTAGCT-T-ACATCTCG
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCC
* * ** *
72396257 AGGTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT--TGTCTCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCC
* * *
72396303 ATGCCGATGCGATGTCCCAGATATGGTCTTACACTGGCTCTCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA
72396346 TAATATGGCT
Statistics
Matches: 151, Mismatches: 20, Indels: 20
0.79 0.10 0.10
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 63 0.42
47 13 0.09
48 15 0.10
49 1 0.01
50 34 0.23
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (50 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCC
Found at i:72396360 original size:94 final size:92
Alignment explanation
Indices: 72396114--72396389 Score: 264
Period size: 94 Copynumber: 3.0 Consensus size: 92
72396104 CATAGGGCAT
* *
72396114 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCAT-GCCGATGCCAT
1 AATGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCATA-AT-CATGGCTGATG-CAT
*
72396178 GTCCTAGACATGGTCTTACACT-GACACATCTC
62 GTCCCAGACAT-GTCTTACACTAG-CACATCTC
* * *
72396210 -GTAGCCGATGCATGTCCCATACAT-GTCTTACACTAGCT-TACAT-CTCGA-GG-TCGATGCAT
1 AAT-GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAATC-ATGGCT-GATGCAT
* *
72396269 GTCCCAGACATGTCTTACACTAGCTCTTGTCTC
62 GTCCCAGACATGTCTTACACTAGCAC--ATCTC
* * *
72396302 AATGCCGATGCGATGTCCCAGATATGGTCTTACACTGGCTCTCATAAT-ATGGCTGATGCATGTT
1 AATGCCGATGC-ATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCATGGCTGATGCATGTC
*
72396366 CCAAACATGTCTTACACTAGCACA
65 CCAGACATGTCTTACACTAGCACA
72396390 CAAATAACCC
Statistics
Matches: 148, Mismatches: 17, Indels: 34
0.74 0.09 0.17
Matches are distributed among these distances:
90 12 0.08
91 15 0.10
92 19 0.13
93 14 0.09
94 64 0.43
95 17 0.11
96 7 0.05
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (92 bp):
AATGCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCATGGCTGATGCATGTCC
CAGACATGTCTTACACTAGCACATCTC
Found at i:72396378 original size:140 final size:141
Alignment explanation
Indices: 72396119--72396386 Score: 346
Period size: 140 Copynumber: 1.9 Consensus size: 141
72396109 GGCATAATGC
* *
72396119 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATGCCGATGCCATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATATCAATGCCGATGCCATGTCCCA
** *
72396184 GACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCATACATGTCTTACACTAGCTT
65 GACATGGTCTTACACTGACACATCTAATAGCCGATGCATGTCCCAAACATGTCTTACACTAGCTT
72396249 ACATCTCGAGGT
130 ACATCTCGAGGT
** * *
72396261 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-TGTCTCAATGCCGATGCGATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAG
* * * * *
72396323 ATATGGTCTTACACTGGCTC-TCATAATATGGCTGATGCATGTTCCAAACATGTCTTACACTAGC
66 ACATGGTCTTACACTGACACATC-TAATA--GCCGATGCATGTCCCAAACATGTCTTACACTAGC
72396387 ACACAAATAA
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
137 2 0.02
138 41 0.38
140 47 0.43
141 14 0.13
142 5 0.05
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGACACATCTAATAGCCGATGCATGTCCCAAACATGTCTTACACTAGCTTA
CATCTCGAGGT
Found at i:72398058 original size:25 final size:24
Alignment explanation
Indices: 72398024--72398076 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
72398014 AAGTTCAAGC
*
72398024 GAGCCATATCATGAAGCTCACAAA
1 GAGCCATATCAGGAAGCTCACAAA
* *
72398048 GAGCCTATATCAGGATGCTCATAAA
1 GAGCC-ATATCAGGAAGCTCACAAA
72398073 GAGC
1 GAGC
72398077 TACATTTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.19
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCACAAA
Found at i:72404685 original size:12 final size:12
Alignment explanation
Indices: 72404668--72404699 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
72404658 ACTTAATCTT
72404668 TTTAATATTAAA
1 TTTAATATTAAA
72404680 TTTAATATTAAA
1 TTTAATATTAAA
72404692 TCTTAATA
1 T-TTAATA
72404700 AAATAATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:72409020 original size:40 final size:39
Alignment explanation
Indices: 72408855--72409038 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
72408845 AAATTGAATG
* * *
72408855 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
72408895 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
72408935 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
72408975 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
72409014 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
72409039 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:72409063 original size:80 final size:81
Alignment explanation
Indices: 72408895--72409083 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
72408885 GCTGGAAATT
* * * *
72408895 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
72408960 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
72408976 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
72409039 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
72409055 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
72409084 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:72411612 original size:20 final size:19
Alignment explanation
Indices: 72411565--72411612 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
72411555 TTTATTGAAG
*
72411565 ATGAATCAATATATATGTT
1 ATGAAACAATATATATGTT
* * *
72411584 ATTACACAATTTATCATGTT
1 ATGAAACAATATAT-ATGTT
72411604 ATGAAACAA
1 ATGAAACAA
72411613 CGTAAATCCA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (19 bp):
ATGAAACAATATATATGTT
Found at i:72423594 original size:23 final size:23
Alignment explanation
Indices: 72423576--72423763 Score: 211
Period size: 23 Copynumber: 8.2 Consensus size: 23
72423566 GGCTACATCT
72423576 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
*
72423599 CAGTGGTAGCTTTGGCTAC-AT-
1 CAGTGGTAGCTTCGGCTACAATA
*
72423620 CTTACTGGTAGCTTCGGCTACAATA
1 C--AGTGGTAGCTTCGGCTACAATA
*
72423645 CAGTGGTAGCTTCGGCTAC-ATCT
1 CAGTGGTAGCTTCGGCTACAAT-A
* * *
72423668 CCGTGGTGGCTTCAGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
*
72423691 CAGTGGTAGCTTTGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
***
72423714 CAGTGGTAGCTTCGGCTATGTTA
1 CAGTGGTAGCTTCGGCTACAATA
* * *
72423737 CAGTGGTAGCTTCAGCTATATTA
1 CAGTGGTAGCTTCGGCTACAATA
72423760 CAGT
1 CAGT
72423764 ATGGCACTTT
Statistics
Matches: 140, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.01
22 4 0.03
23 130 0.93
24 4 0.03
25 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACAATA
Found at i:72423762 original size:46 final size:46
Alignment explanation
Indices: 72423564--72423763 Score: 237
Period size: 46 Copynumber: 4.3 Consensus size: 46
72423554 TAGGAATCTA
72423564 TCGGCTACATCT-CAGTGGTAGCTTCGGCTACAATACAGTGGTAGCT
1 TCGGCTACAT-TACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCT
*
72423610 TTGGCTACATCTTAC--TGGTAGCTTCGGCTACAATACAGTGGTAGCT
1 TCGGCTACA--TTACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCT
* * *
72423656 TCGGCTACATCT-CCGTGGTGGCTTCAGCTACAATACAGTGGTAGCT
1 TCGGCTACAT-TACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCT
* * ***
72423702 TTGGCTACAATACAGTGGTAGCTTCGGCTATGTTACAGTGGTAGCT
1 TCGGCTACATTACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCT
* *
72423748 TCAGCTATATTACAGT
1 TCGGCTACATTACAGT
72423764 ATGGCACTTT
Statistics
Matches: 131, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 124 0.95
47 1 0.01
48 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (46 bp):
TCGGCTACATTACAGTGGTAGCTTCGGCTACAATACAGTGGTAGCT
Found at i:72426129 original size:38 final size:35
Alignment explanation
Indices: 72426068--72426185 Score: 126
Period size: 31 Copynumber: 3.5 Consensus size: 35
72426058 TCAATCATGC
*
72426068 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
*
72426107 ACTGGGCCGAAGCATTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
72426138 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
72426169 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
72426186 ACTGTAAACG
Statistics
Matches: 76, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
31 48 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 13 0.17
39 11 0.14
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:72426182 original size:31 final size:31
Alignment explanation
Indices: 72426091--72426185 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
72426081 CCTTTTCATA
* *
72426091 TTTCATATTTCATAATACTGGGCCGAAGCAT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
72426122 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
72426153 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
72426184 TT
1 TT
72426186 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:72426456 original size:47 final size:48
Alignment explanation
Indices: 72426377--72426495 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
72426367 GCTTTATCAT
*
72426377 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
72426426 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
72426473 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72426496 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:72426496 original size:24 final size:24
Alignment explanation
Indices: 72426377--72426495 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
72426367 GCTTTATCAT
*
72426377 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
72426402 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
72426426 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
72426449 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
72426473 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72426496 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72426567 original size:9 final size:9
Alignment explanation
Indices: 72426553--72426629 Score: 55
Period size: 9 Copynumber: 7.9 Consensus size: 9
72426543 ATCTCGTGTG
72426553 CATATCATA
1 CATATCATA
*
72426562 CATATCATGTG
1 CATATCA--TA
72426573 CATATCATA
1 CATATCATA
* * *
72426582 CGTGTCATGTG
1 CATATCA--TA
72426593 CATATCATA
1 CATATCATA
*
72426602 CATATCATGTG
1 CATATCA--TA
72426613 CATATCATA
1 CATATCATA
72426622 CATATCAT
1 CATATCAT
72426630 GTTTATCAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
9 30 0.58
11 22 0.42
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:72426572 original size:20 final size:20
Alignment explanation
Indices: 72426549--72426631 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
72426539 GAACATCTCG
72426549 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
* *
72426569 TGTGCATATCATACGTGTCA
1 TGTGCATATCATACATATCA
72426589 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
72426609 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
72426629 TGT
1 TGT
72426632 TTATCAAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:72426578 original size:11 final size:11
Alignment explanation
Indices: 72426549--72426620 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 11
72426539 GAACATCTCG
72426549 TGTGCATATCA
1 TGTGCATATCA
*
72426560 --TACATATCA
1 TGTGCATATCA
72426569 TGTGCATATCA
1 TGTGCATATCA
* * *
72426580 --TACGTGTCA
1 TGTGCATATCA
72426589 TGTGCATATCA
1 TGTGCATATCA
*
72426600 --TACATATCA
1 TGTGCATATCA
72426609 TGTGCATATCA
1 TGTGCATATCA
72426620 T
1 T
72426621 ACATATCATG
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
9 22 0.49
11 23 0.51
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:72426696 original size:25 final size:25
Alignment explanation
Indices: 72426668--72426715 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72426658 ATGTATAAAC
* * *
72426668 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72426693 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72426716 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72427909 original size:27 final size:27
Alignment explanation
Indices: 72427848--72427911 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
72427838 GGCATATTCG
*
72427848 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGA
* *
72427875 TCACTTTACCCTACAGGGGCT-TTACGA
1 TCATTTTACCATACAGGGG-TATTACGA
*
72427902 TCTTTTTACC
1 TCATTTTACC
72427912 TTTTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:72427995 original size:27 final size:26
Alignment explanation
Indices: 72427965--72428020 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
72427955 GTAAATCAAC
*
72427965 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
72427992 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
72428018 AAA
1 AAA
72428021 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:72428105 original size:27 final size:28
Alignment explanation
Indices: 72428029--72428105 Score: 77
Period size: 27 Copynumber: 2.8 Consensus size: 28
72428019 AAAAGTCAAG
* * *
72428029 GGTATTTCTGTAACTTTGTAAA-TCAGG
1 GGTATTTCGGTAATTTTGTAAATTCAGC
* ** *
72428056 GGTATTTTGGTAATTTTACAAATTGA-C
1 GGTATTTCGGTAATTTTGTAAATTCAGC
72428083 GGTATTTCGGTAATTTTGTAAAT
1 GGTATTTCGGTAATTTTGTAAAT
72428106 CGAGGGTAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 37 0.95
28 2 0.05
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (28 bp):
GGTATTTCGGTAATTTTGTAAATTCAGC
Found at i:72428113 original size:27 final size:27
Alignment explanation
Indices: 72428090--72428320 Score: 277
Period size: 27 Copynumber: 8.6 Consensus size: 27
72428080 GACGGTATTT
72428090 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAA
* * *
72428117 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAA
* *
72428144 CAGTAATTTTATAAATCGAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAA
* *
72428171 CGGTAA-TCTATAAATCGAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAA
* *
72428197 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAA
* *
72428224 CGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTTTGTAAATCGA-GGGTAAAA
* * *
72428251 CGGTAATTATGTAAATTGTGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAA
* *
72428278 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAA
* *
72428305 CGATAATTATGTAAAT
1 CGGTAATTTTGTAAAT
72428321 TAGGGGTATT
Statistics
Matches: 178, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 26 0.15
27 152 0.85
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
CGGTAATTTTGTAAATCGAGGGTAAAA
Found at i:72428219 original size:80 final size:80
Alignment explanation
Indices: 72428090--72428328 Score: 322
Period size: 81 Copynumber: 3.0 Consensus size: 80
72428080 GACGGTATTT
* * * * *
72428090 CGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAAC-AGTAATTTT
1 CGGTAA-TTAGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGA-TAATTAT
72428154 ATAAATC-GAGGGTAAAA
64 ATAAATCAG-GGGTAAAA
*
72428171 CGGTAATCTA-TAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATG
1 CGGTAAT-TAGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATA
72428235 TAAATCAGGGGTAAAA
65 TAAATCAGGGGTAAAA
* * *
72428251 CGGTAATTATGTAAATTGTGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATG
1 CGGTAATTA-GTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATA
*
72428316 TAAATTAGGGGTA
65 TAAATCAGGGGTA
72428329 TTTTGGTAAT
Statistics
Matches: 144, Mismatches: 9, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
79 2 0.01
80 69 0.48
81 73 0.51
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.28
Consensus pattern (80 bp):
CGGTAATTAGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATAT
AAATCAGGGGTAAAA
Found at i:72428224 original size:107 final size:108
Alignment explanation
Indices: 72428090--72428320 Score: 322
Period size: 107 Copynumber: 2.1 Consensus size: 108
72428080 GACGGTATTT
* * *
72428090 CGGTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAACAGTAATTTT
1 CGGTAATTATGTAAATCGAGGGTAAAACGA-TAATTATGTAAATCAAGGGTAAAACAGTAATTAT
72428154 ATAAATCGAGGGTAAAACGGTAA-TCTATAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
* * * * *
72428197 CGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATG
1 CGGTAATTATGTAAATCGAGGGTAAAACGATAATTATGTAAATCAAGGGTAAAACAGTAATTATA
* * * *
72428262 TAAATTGTGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAA
66 TAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
*
72428305 CGATAATTATGTAAAT
1 CGGTAATTATGTAAAT
72428321 TAGGGGTATT
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
107 76 0.70
108 32 0.30
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (108 bp):
CGGTAATTATGTAAATCGAGGGTAAAACGATAATTATGTAAATCAAGGGTAAAACAGTAATTATA
TAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
Found at i:72431664 original size:15 final size:15
Alignment explanation
Indices: 72431644--72431673 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72431634 ATTATGAAAG
72431644 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
72431659 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
72431674 GAATATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:72432887 original size:23 final size:23
Alignment explanation
Indices: 72432861--72432906 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
72432851 ATTTGCTTAA
72432861 GGCTTACTAAGCTAAGTTAGCTT
1 GGCTTACTAAGCTAAGTTAGCTT
72432884 GGCTTACTAAGCTAAGTTAGCTT
1 GGCTTACTAAGCTAAGTTAGCTT
72432907 ACTCTGTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (23 bp):
GGCTTACTAAGCTAAGTTAGCTT
Found at i:72433599 original size:2 final size:2
Alignment explanation
Indices: 72433592--72433628 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
72433582 AAGTAACAAG
* *
72433592 TA TA TA TA TA TT TT TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
72433629 CTATTTTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (2 bp):
TA
Found at i:72438302 original size:48 final size:48
Alignment explanation
Indices: 72438247--72438659 Score: 328
Period size: 48 Copynumber: 8.6 Consensus size: 48
72438237 TATGTGTGCG
* * * *
72438247 AGTGTAAGACCATGTCTGGGATATGGCATCGACCAAAGTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCATAGTATGAGAGCT
* * * * * * *
72438295 AGTGTAAGACCATATTTGGGACATGGCATTGA-CGTTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCATAG-TATGAGAGCT
* * * * * *
72438343 AGTGTAAGACCATGTCTGGGACGTGGCATTGA-CGTTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCATAG-TATGAGAGCT
* * * *
72438391 AGTGTAAGACCATGTCTGGGACATGACATC-ATCCATATTATGAGATCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CCATAGTATGAGAGCT
**
72438439 AGTGTAAGACCATGT-TGGGAACATGGCATC-AGTATAGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGG-ACATGGCATCGACCATAG-TATGAGAGCT
* * * *
72438487 AGTGTAAGACCATGTCTGGAACATGGCATC-AGCC-TCGACATGTGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CCATAG-TATGAGAGCT
* *
72438535 AGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGAG-ACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-T-AGTATGAGAGCT
* * * *
72438583 AGTGTGAA-ACCATGTCTGGGACATGGCATCTG--CATCGACATGTGAGCC
1 AGTGT-AAGACCATGTCTGGGACATGGCATC-GACCATAG-TATGAGAGCT
*
72438631 AGTGTAAGACTATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
72438660 TGGCAATTTA
Statistics
Matches: 302, Mismatches: 47, Indels: 32
0.79 0.12 0.08
Matches are distributed among these distances:
46 1 0.00
47 14 0.05
48 278 0.92
49 8 0.03
50 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCATAGTATGAGAGCT
Found at i:72438396 original size:96 final size:96
Alignment explanation
Indices: 72438233--72438661 Score: 381
Period size: 96 Copynumber: 4.5 Consensus size: 96
72438223 GCACATTTGG
* * * *** * *
72438233 TTGATATGTGTGCGAGTGTAAGACCATGTCTGGGATATGGCATCGAC-CAAAGTGTGAGAGCCAG
1 TTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACGTTGA-TATGAGAGCTAG
* * * *
72438297 TGTAAGACCATATTTGGGACATGGCAT-TGACG
65 TGTAAGACCATGTCTGGGACATGGCATCAG-CC
* * * *
72438329 TTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACGTGGCATTGACGTTGATATGTGTGCTAGT
1 TTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACGTTGATATGAGAGCTAGT
* *
72438394 GTAAGACCATGTCTGGGACATGACATCATCC
66 GTAAGACCATGTCTGGGACATGGCATCAGCC
* * * *
72438425 AT-ATTATGAGAT-CCAGTGTAAGACCATGT-TGGGAACATGGCA-TCA-GTATAGTTATGAGAG
1 TTGA-TATGTG-TGCCAGTGTAAGACCATGTCTGGG-ACATGGCATTGACGT-T-GATATGAGAG
*
72438485 CTAGTGTAAGACCATGTCTGGAACATGGCATCAGCC
61 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCC
* * * * * * * *
72438521 TCGACATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCA-TCAGCATTGAGACGAGAGCTAG
1 TTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGA-CGTTGATATGAGAGCTAG
* *
72438585 TGTGAA-ACCATGTCTGGGACATGGCATCTGCA
65 TGT-AAGACCATGTCTGGGACATGGCATCAGCC
* * * *
72438617 TCGACATGTGAGCCAGTGTAAGACTATGTCTGGGACATGGCATTG
1 TTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTG
72438662 GCAATTTACC
Statistics
Matches: 275, Mismatches: 44, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
94 2 0.01
95 8 0.03
96 253 0.92
97 11 0.04
98 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (96 bp):
TTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGACGTTGATATGAGAGCTAGT
GTAAGACCATGTCTGGGACATGGCATCAGCC
Found at i:72438492 original size:144 final size:142
Alignment explanation
Indices: 72438232--72438661 Score: 465
Period size: 144 Copynumber: 3.0 Consensus size: 142
72438222 TGCACATTTG
* * * * *
72438232 GTTGATATGTGTGCGAGTGTAAGACCATGTCTGGGATATGGCATCGACCAAAGTGTGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATC-ACCATATTATGAGAGCCAG
* * *
72438297 TGTAAGACCATATTTGGGACATGGCATTGACGT-TGATATGTGTGCTAGTGTAAGACCATGTCTG
65 TGTAAGACCAT-GTTGGGACATGGCA-TCA-GTATGATATGTGAGCTAGTGTAAGACCATGTCTG
*
72438361 GGACGTGGCATTGA-C
127 GGACATGGCATTGAGC
* *
72438376 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGACATCATCCATATTATGAGATCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCA-CCATATTATGAGAGCCAG
* *
72438441 TGTAAGACCATGTTGGGAACATGGCATCAGTATAGTTATGAGAGCTAGTGTAAGACCATGTCTGG
65 TGTAAGACCATGTTGGG-ACATGGCATCAGTAT-GATATGTGAGCTAGTGTAAGACCATGTCTGG
* *
72438506 AACATGGCA-TCAGC
128 GACATGGCATTGAGC
* * * * * * * *
72438520 CTCGACATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-TGAGACGAGAGCTA
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCACCATAT--TATGAGAGCCA
* * * * *
72438584 GTGTGAA-ACCATGTCTGGGACATGGCATCTGCATCGACATGTGAGCCAGTGTAAGACTATGTCT
64 GTGT-AAGACCATGT-TGGGACATGGCATCAGTAT-GATATGTGAGCTAGTGTAAGACCATGTCT
72438648 GGGACATGGCATTG
126 GGGACATGGCATTG
72438662 GCAATTTACC
Statistics
Matches: 241, Mismatches: 35, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
142 3 0.01
143 14 0.06
144 217 0.90
145 7 0.03
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (142 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCACCATATTATGAGAGCCAGT
GTAAGACCATGTTGGGACATGGCATCAGTATGATATGTGAGCTAGTGTAAGACCATGTCTGGGAC
ATGGCATTGAGC
Found at i:72449714 original size:27 final size:27
Alignment explanation
Indices: 72449676--72449729 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
72449666 TGAGATTGAG
*
72449676 CTTAAGCCCGATATGACATACTAAGAA
1 CTTAAGCCCGATATGACATACGAAGAA
72449703 CTTAAGCCCGATATGACATACGAAGAA
1 CTTAAGCCCGATATGACATACGAAGAA
72449730 GAACCGATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (27 bp):
CTTAAGCCCGATATGACATACGAAGAA
Found at i:72461927 original size:43 final size:43
Alignment explanation
Indices: 72461808--72461929 Score: 156
Period size: 43 Copynumber: 2.8 Consensus size: 43
72461798 ATACATATCG
* * * *
72461808 ATGCCACTGTCCCAGACAAGGTCTTACACGAAATCATAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATACA
* *
72461851 ATGCCAATGTCCTAGCCATGGTCTTACACGTAATC-TCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAT-AATACA
* *
72461894 ATGTCAATGTCCCAGACATGGTCTTACATGTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
72461930 CATCTCGATA
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.01
43 66 0.99
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATACA
Found at i:72466757 original size:58 final size:56
Alignment explanation
Indices: 72466611--72466757 Score: 154
Period size: 56 Copynumber: 2.6 Consensus size: 56
72466601 CGTATAACAG
* * *
72466611 GATTACCAGTCCAGGCTAAATCCTTTATATAACGTATGCTTAAAGAGTTTAATTAG
1 GATTACCAGTCCAGGCTAAATCCTTTATATAACGTATACTCAAAGAGTTTAATTAA
* * * * *
72466667 GGTTACTAGTCCAAGCTAAA-CCCTGATCATAACGTATACTC-AAGAGGTATTATATTAA
1 GATTACCAGTCCAGGCTAAATCCTTTAT-ATAACGTATACTCAAAGA-GT-TTA-ATTAA
* *
72466725 GATTACCAATCTAGGCTAAATCCTTTATATAAC
1 GATTACCAGTCCAGGCTAAATCCTTTATATAAC
72466758 AAGGTTAATG
Statistics
Matches: 71, Mismatches: 15, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
55 9 0.13
56 30 0.42
57 3 0.04
58 24 0.34
59 5 0.07
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (56 bp):
GATTACCAGTCCAGGCTAAATCCTTTATATAACGTATACTCAAAGAGTTTAATTAA
Found at i:72471934 original size:13 final size:13
Alignment explanation
Indices: 72471916--72471944 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
72471906 CAACAATTTG
72471916 AAGTCACATGGCC
1 AAGTCACATGGCC
72471929 AAGTCACATGGCC
1 AAGTCACATGGCC
72471942 AAG
1 AAG
72471945 GCCGTGTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.28, G:0.24, T:0.14
Consensus pattern (13 bp):
AAGTCACATGGCC
Found at i:72482751 original size:40 final size:39
Alignment explanation
Indices: 72482706--72482835 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 39
72482696 CGGAATATAA
72482706 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72482746 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGGCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72482786 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
72482826 CCGGATATAA
1 CCGGATATAA
72482836 TTTCCAGCAT
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72482850 original size:40 final size:40
Alignment explanation
Indices: 72482722--72482873 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
72482712 ATAACCATGT
* * *
72482722 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* * ** * *
72482762 GCACGAA-TGCCTTCGGGGCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72482802 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72482842 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
72482874 CATTCAATTT
Statistics
Matches: 89, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:72482856 original size:80 final size:80
Alignment explanation
Indices: 72482722--72482871 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
72482712 ATAACCATGT
* *
72482722 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGACTTAGCC
72482787 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * * *
72482802 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGACTTAG
72482865 CCCGGAT
64 CCCGGAT
72482872 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGACTTAGCC
CGGATGTAGCCACTA
Found at i:72486998 original size:15 final size:15
Alignment explanation
Indices: 72486978--72487008 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
72486968 CGAGGGCGTT
72486978 ACATTTAGTGGTATC
1 ACATTTAGTGGTATC
72486993 ACATTTAGTGGTATC
1 ACATTTAGTGGTATC
72487008 A
1 A
72487009 GAGCTATGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (15 bp):
ACATTTAGTGGTATC
Found at i:72488481 original size:15 final size:15
Alignment explanation
Indices: 72488463--72488495 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
72488453 TGGATTTTCG
72488463 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
72488478 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
72488493 TAT
1 TAT
72488496 TCTTGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:72488507 original size:30 final size:29
Alignment explanation
Indices: 72488473--72488530 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
72488463 TATCATGGAT
* *
72488473 TTCTTTATCTTGGATTTCTTTATTCTTGGC
1 TTCTTTATCTTAGATTTCTCTA-TCTTGGC
* *
72488503 TTCTTTGTTTTAGATTTCTCTATCTTGG
1 TTCTTTATCTTAGATTTCTCTATCTTGG
72488531 TTTTTCTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.10, C:0.16, G:0.14, T:0.60
Consensus pattern (29 bp):
TTCTTTATCTTAGATTTCTCTATCTTGGC
Found at i:72489867 original size:13 final size:13
Alignment explanation
Indices: 72489849--72489883 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
72489839 TGATTTCGTG
72489849 AAAATTTCGTTCA
1 AAAATTTCGTTCA
72489862 AAAATTTCGTTCA
1 AAAATTTCGTTCA
72489875 AAAATTTCG
1 AAAATTTCG
72489884 ACGTTTGGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (13 bp):
AAAATTTCGTTCA
Found at i:72494655 original size:41 final size:42
Alignment explanation
Indices: 72494523--72494699 Score: 212
Period size: 42 Copynumber: 4.2 Consensus size: 42
72494513 TACCATACAA
* ***
72494523 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCCAAATATGGTCTTACACAAAATCTCATATCG
* * *
72494565 ATGCCAATAGCCCAACTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAAATATGGTCTTACACAAAATCTCATATCG
* *
72494608 ATGCCATATCCCAAATATGGTCTTACAC-AATTCTCATATTG
1 ATGCCATATCCCAAATATGGTCTTACACAAAATCTCATATCG
* * * *
72494649 ATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATAACG
1 ATGCCATATCCCAAATATGGTCTTACACAAAATCTCATATCG
*
72494691 ATGTCATAT
1 ATGCCATAT
72494700 ACAAGATATC
Statistics
Matches: 116, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
41 36 0.31
42 43 0.37
43 37 0.32
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTACACAAAATCTCATATCG
Found at i:72494693 original size:83 final size:84
Alignment explanation
Indices: 72494523--72494699 Score: 236
Period size: 83 Copynumber: 2.1 Consensus size: 84
72494513 TACCATACAA
* *
72494523 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGCCAATAGCCCAACTATGGTC
1 ATGCCATATCCCAAATATGGTCTTACA-GCAATCTCATATCGATGCCAATAGCCCAACTATGGTC
* *
72494588 TTACACGAAATCTCATATCG
65 TTACACAAAATCTCATAACG
*
72494608 ATGCCATATCCCAAATATGGTCTTACA-CAATTCTCATATTGATGCC-AT-GTCCCAGAC-ATGG
1 ATGCCATATCCCAAATATGGTCTTACAGCAA-TCTCATATCGATGCCAATAG-CCCA-ACTATGG
72494669 TCTTACACAAAATCTCATAACG
63 TCTTACACAAAATCTCATAACG
*
72494691 ATGTCATAT
1 ATGCCATAT
72494700 ACAAGATATC
Statistics
Matches: 83, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
82 1 0.01
83 40 0.48
84 16 0.19
85 26 0.31
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (84 bp):
ATGCCATATCCCAAATATGGTCTTACAGCAATCTCATATCGATGCCAATAGCCCAACTATGGTCT
TACACAAAATCTCATAACG
Found at i:72494715 original size:83 final size:84
Alignment explanation
Indices: 72494555--72494719 Score: 212
Period size: 83 Copynumber: 2.0 Consensus size: 84
72494545 TTACATGTAA
* * *
72494555 TCTCATATCGATGCCAATAGCCCAACTATGGTCTTACACGAAATCTCATATCGATGCCATATCCC
1 TCTCATATCGATGCCAATAGCCCAACTATGGTCTTACACAAAATCTCATAACGATGCCATATCAC
**
72494620 AAATATGGTCTTACACAAT
66 AAATATCATCTTACACAAT
* *
72494639 TCTCATATTGATGCC-AT-GTCCCAGAC-ATGGTCTTACACAAAATCTCATAACGATGTCATAT-
1 TCTCATATCGATGCCAATAG-CCCA-ACTATGGTCTTACACAAAATCTCATAACGATGCCATATC
72494700 ACAAGATATCATCTTACACA
64 ACAA-ATATCATCTTACACA
72494720 TAAAATCATA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
82 4 0.06
83 51 0.72
84 16 0.23
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (84 bp):
TCTCATATCGATGCCAATAGCCCAACTATGGTCTTACACAAAATCTCATAACGATGCCATATCAC
AAATATCATCTTACACAAT
Done.