Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 233 of 433
Found at i:72495186 original size:14 final size:13
Alignment explanation
Indices: 72495163--72495192 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
72495153 ATTTTCACCG
72495163 AAAATCATTTAAC
1 AAAATCATTTAAC
72495176 AAAAGTCATTTAAC
1 AAAA-TCATTTAAC
72495190 AAA
1 AAA
72495193 CCATAAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (13 bp):
AAAATCATTTAAC
Found at i:72498352 original size:46 final size:44
Alignment explanation
Indices: 72498248--72498355 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
72498238 TGTCTTTGAC
** * * *
72498248 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
72498292 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
72498338 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
72498356 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:72504233 original size:40 final size:40
Alignment explanation
Indices: 72504105--72504235 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
72504095 TATGCTGGAA
* * * *
72504105 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
72504145 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
72504185 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
72504225 ATTATATCCGG
1 ATTATATCCGG
72504236 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:72509063 original size:40 final size:40
Alignment explanation
Indices: 72509004--72509211 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
72508994 CAATTGAATG
* * * *
72509004 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72509044 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
72509084 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72509124 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72509164 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
72509204 ATATCCGG
1 ATATCCGG
72509212 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:72509142 original size:80 final size:80
Alignment explanation
Indices: 72509006--72509211 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
72508996 ATTGAATGAT
* * ** * * *
72509006 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
72509070 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
72509086 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
72509151 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
72509166 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
72509212 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:72518165 original size:6 final size:6
Alignment explanation
Indices: 72518154--72518188 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
72518144 TTCAAACTAC
72518154 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
72518189 TAGCAGATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:72524059 original size:49 final size:47
Alignment explanation
Indices: 72524006--72524193 Score: 146
Period size: 50 Copynumber: 3.8 Consensus size: 47
72523996 AACCAAAGCT
*
72524006 ATCTGTTACACATAGTAGCCTGCACTTAGTACTACACATACATCCAAG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACAT-CATCCAAG
* * * *
72524054 AATCT-GTCACACGTAGTAACCTGCACTTAGTACTACACACGTGATCGAAG
1 -ATCTGGT-ACACATAGTAGCCTGCACTTAGTACTACACA--TCATCCAAG
* * * * *
72524104 TTGTTGGGTACGCATAGTAGCCTGCACTTATTACTACACATGCGA-CCTAACC
1 AT-CT-GGTACACATAGTAGCCTGCACTTAGTACTACACAT-C-ATCC-AA-G
* * *
72524156 ATCTGGTACACGTAGTAGCTTGCACTTAGTACTGCACA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
72524194 CGTGACCTAA
Statistics
Matches: 108, Mismatches: 21, Indels: 19
0.73 0.14 0.13
Matches are distributed among these distances:
48 1 0.01
49 35 0.32
50 37 0.34
51 32 0.30
52 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (47 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATCATCCAAG
Found at i:72524194 original size:101 final size:100
Alignment explanation
Indices: 72524016--72524198 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 100
72524006 ATCTGTTACA
*
72524016 CATAGTAGCCTGCACTTAGTACTACACATACATCCAAGAATCTGTCACACGTAGTAACCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACATACATCCAACAATCTGTCACACGTAGTAACCTGCACT
72524081 TAGTACTACACACGTGATCGAAGTTGTTGGGTACG
66 TAGTACTACACACGTGATCGAAGTTGTTGGGTACG
* * * * *
72524116 CATAGTAGCCTGCACTTATTACTACACATGCGA-CCTAACCATCTGGT-ACACGTAGTAGCTTGC
1 CATAGTAGCCTGCACTTAGTACTACACATAC-ATCC-AACAATCT-GTCACACGTAGTAACCTGC
*
72524179 ACTTAGTACTGCACACGTGA
63 ACTTAGTACTACACACGTGA
72524199 CCTAAAACCA
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
100 31 0.42
101 40 0.55
102 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACATACATCCAACAATCTGTCACACGTAGTAACCTGCACT
TAGTACTACACACGTGATCGAAGTTGTTGGGTACG
Found at i:72526561 original size:31 final size:31
Alignment explanation
Indices: 72526520--72526583 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72526510 CCTTTTCATA
*
72526520 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
72526551 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
72526582 TT
1 TT
72526584 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:72526822 original size:23 final size:24
Alignment explanation
Indices: 72526775--72526979 Score: 281
Period size: 23 Copynumber: 9.0 Consensus size: 24
72526765 GCTTTATCAT
*
72526775 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
72526800 ACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72526823 ATAACTGGGGCA-AAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72526845 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72526868 ATAACTGGGGCATAAGCCC-TTT-
1 ATAACTGGGGCATAAGCCCTTTTA
72526890 -TAA-T-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72526910 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
72526934 ATAAGTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
72526957 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72526980 TGCACTTCCT
Statistics
Matches: 165, Mismatches: 5, Indels: 21
0.86 0.03 0.11
Matches are distributed among these distances:
19 15 0.09
20 1 0.01
21 6 0.04
22 19 0.12
23 83 0.50
24 34 0.21
25 7 0.04
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:72526948 original size:47 final size:47
Alignment explanation
Indices: 72526775--72526979 Score: 284
Period size: 47 Copynumber: 4.5 Consensus size: 47
72526765 GCTTTATCAT
* *
72526775 ATAACTGGAGGCCT-AGCCTCTTTTAACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTA
*
72526823 ATAACTGGGGCA-AAGCCC-TTTAATAACTGGGGCATAAGCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
72526868 ATAACTGGGGCATAAGCCC-TTT--TAA-T-GGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
*
72526910 ATAACTGGGGCATAAGCCCTTTTAATAAGTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
72526957 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
72526980 TGCACTTCCT
Statistics
Matches: 145, Mismatches: 4, Indels: 17
0.87 0.02 0.10
Matches are distributed among these distances:
42 34 0.23
43 4 0.03
44 3 0.02
45 34 0.23
46 16 0.11
47 46 0.32
48 8 0.06
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:72526951 original size:89 final size:87
Alignment explanation
Indices: 72526807--72526979 Score: 294
Period size: 89 Copynumber: 2.0 Consensus size: 87
72526797 TTAACAACTG
*
72526807 GGGCAAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGGCATAAGCCTTTTAATAA
1 GGGCAAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAA
72526872 CTGGGGCATAAGCCCTTTTAAT
66 CTGGGGCATAAGCCCTTTTAAT
*
72526894 GGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTAATAAGTGGGGCATAAGCCCTTTAA
1 GGGCA-AAGCCCTTTTAATAACTGGGGCA-AAGCCC-TTTAATAACTGGGGCATAAGCCCTTTAA
72526958 TAACTGGGGCATAAGCCCTTTT
63 TAACTGGGGCATAAGCCCTTTT
72526980 TGCACTTCCT
Statistics
Matches: 81, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
87 21 0.26
88 12 0.15
89 48 0.59
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (87 bp):
GGGCAAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGGCATAAGCCCTTTAATAA
CTGGGGCATAAGCCCTTTTAAT
Found at i:72527052 original size:9 final size:9
Alignment explanation
Indices: 72527038--72527094 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
72527028 ATCTCATGTG
72527038 CATATCATA
1 CATATCATA
*
72527047 CATATCATGTG
1 CATATCA--TA
72527058 CATATCATA
1 CATATCATA
* *
72527067 CATGTCATGTG
1 CATATCA--TA
72527078 CATATCATA
1 CATATCATA
72527087 CATATCAT
1 CATATCAT
72527095 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:72527054 original size:20 final size:20
Alignment explanation
Indices: 72527026--72527096 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
72527016 ACATTTATAA
*
72527026 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
72527046 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
72527066 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
72527086 ACATATCATGT
1 ACATATCATGT
72527097 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:72527061 original size:11 final size:11
Alignment explanation
Indices: 72527031--72527085 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
72527021 TATAAACATC
72527031 TCATGTGCATA
1 TCATGTGCATA
*
72527042 TCA--TACATA
1 TCATGTGCATA
72527051 TCATGTGCATA
1 TCATGTGCATA
* *
72527062 TCA--TACATG
1 TCATGTGCATA
72527071 TCATGTGCATA
1 TCATGTGCATA
72527082 TCAT
1 TCAT
72527086 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:72528445 original size:27 final size:27
Alignment explanation
Indices: 72528416--72528755 Score: 441
Period size: 27 Copynumber: 12.6 Consensus size: 27
72528406 GGGTATTTTA
* *
72528416 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
** *
72528443 GTAATTCTGTAAATTAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
72528470 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
72528497 GTAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
72528524 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
72528551 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
72528578 GTAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
72528605 GTAATTCTGTAAATCGAGGTTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
72528632 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
72528659 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
72528686 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
72528713 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
72528740 GTAATTATGTAAATCG
1 GTAATTCTGTAAATCG
72528756 GGAGTACTTT
Statistics
Matches: 274, Mismatches: 35, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.01
27 266 0.97
28 4 0.01
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:72531561 original size:31 final size:31
Alignment explanation
Indices: 72531520--72531583 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
72531510 CCTTTTCATA
*
72531520 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
72531551 TTTCAAATTTCATATTACTGGGCTGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
72531582 TT
1 TT
72531584 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:72531722 original size:23 final size:24
Alignment explanation
Indices: 72531671--72531861 Score: 295
Period size: 23 Copynumber: 8.2 Consensus size: 24
72531661 GACTACTCCT
*
72531671 CTTTTAACAACTGGGGCA-AAG-C
1 CTTTTAATAACTGGGGCATAAGCC
72531693 CTTTTAATAACTGGGGCA-AAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
72531716 CTTTTAATAATTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
72531740 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
72531763 CTTTTAATAACTGAGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
72531787 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
72531810 CTTTTAATAACTGGGGCATAAG-C
1 CTTTTAATAACTGGGGCATAAGCC
* *
72531833 CATTTAATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
72531857 CTTTT
1 CTTTT
72531862 TGCACTTCCT
Statistics
Matches: 156, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
22 20 0.13
23 83 0.53
24 53 0.34
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:72531765 original size:47 final size:47
Alignment explanation
Indices: 72531671--72531861 Score: 314
Period size: 47 Copynumber: 4.1 Consensus size: 47
72531661 GACTACTCCT
* *
72531671 CTTTTAACAACTGGGGCA-AAGCCTTTTAATAACTGGGGCA-AAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
72531716 CTTTTAATAATTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
72531763 CTTTTAATAACTGAGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* *
72531810 CTTTTAATAACTGGGGCATAAGCCATTTAATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
72531857 CTTTT
1 CTTTT
72531862 TGCACTTCCT
Statistics
Matches: 136, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
45 16 0.12
46 21 0.15
47 99 0.73
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:72531792 original size:70 final size:70
Alignment explanation
Indices: 72531671--72531860 Score: 289
Period size: 70 Copynumber: 2.7 Consensus size: 70
72531661 GACTACTCCT
* * *
72531671 CTTTTAACAACTGGGGCA-AAGCCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAATTGGGGCA
1 CTTTTAATAACTGGGGCATAAGCCTTTTAATAACTGAGGCATAAGCCC-TTTAATAACTGGGGCA
72531734 TAAGCC
65 TAAGCC
72531740 C-TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGAGGCATAAGCCCTTTAATAACTGGGGCA
1 CTTTTAATAACTGGGGCATAAG-CCTTTTAATAACTGAGGCATAAGCCCTTTAATAACTGGGGCA
72531804 TAAGCC
65 TAAGCC
*
72531810 CTTTTAATAACTGGGGCATAAGCCATTTAATAACT-AGGGCATAAGCCCTTT
1 CTTTTAATAACTGGGGCATAAGCCTTTTAATAACTGA-GGCATAAGCCCTTT
72531861 TTGCACTTCC
Statistics
Matches: 112, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
68 15 0.13
69 5 0.04
70 66 0.59
71 26 0.23
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (70 bp):
CTTTTAATAACTGGGGCATAAGCCTTTTAATAACTGAGGCATAAGCCCTTTAATAACTGGGGCAT
AAGCC
Found at i:72531934 original size:9 final size:9
Alignment explanation
Indices: 72531920--72531976 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
72531910 ATCTCATGTG
72531920 CATATCATA
1 CATATCATA
*
72531929 CATATCATGTG
1 CATATCA--TA
72531940 CATATCATA
1 CATATCATA
* *
72531949 CATGTCATGTG
1 CATATCA--TA
72531960 CATATCATA
1 CATATCATA
72531969 CATATCAT
1 CATATCAT
72531977 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:72531936 original size:20 final size:20
Alignment explanation
Indices: 72531908--72531978 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
72531898 GCATTTATGA
*
72531908 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
72531928 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
72531948 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
72531968 ACATATCATGT
1 ACATATCATGT
72531979 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:72531943 original size:11 final size:11
Alignment explanation
Indices: 72531913--72531967 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
72531903 TATGAACATC
72531913 TCATGTGCATA
1 TCATGTGCATA
*
72531924 TCA--TACATA
1 TCATGTGCATA
72531933 TCATGTGCATA
1 TCATGTGCATA
* *
72531944 TCA--TACATG
1 TCATGTGCATA
72531953 TCATGTGCATA
1 TCATGTGCATA
72531964 TCAT
1 TCAT
72531968 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:72532057 original size:25 final size:24
Alignment explanation
Indices: 72532015--72532062 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
72532005 ATATATAAAC
* * *
72532015 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
72532040 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72532063 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:72533321 original size:27 final size:27
Alignment explanation
Indices: 72533301--72533641 Score: 404
Period size: 27 Copynumber: 12.6 Consensus size: 27
72533291 AGGGTATTTT
*
72533301 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72533328 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
72533355 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72533382 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72533409 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72533436 -GATAATTATGTAAATCG-GAGGTAAAAC
1 AG-TAATTCTGTAAATCGAG-GGTAAAAC
* * * *
72533463 GGTAATTATGTAAATTGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
72533490 -GATAATTCTGTAAATCGAGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
72533517 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
72533544 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
72533571 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
72533598 GGTAATTCTAT-AACCTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
72533625 GGTAATTATGTAAATCG
1 AGTAATTCTGTAAATCG
72533642 GGAGTCCTTT
Statistics
Matches: 279, Mismatches: 25, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
26 7 0.03
27 265 0.95
28 7 0.03
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:72533387 original size:81 final size:82
Alignment explanation
Indices: 72533302--72533641 Score: 465
Period size: 81 Copynumber: 4.2 Consensus size: 82
72533292 GGGTATTTTA
* * *
72533302 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
72533367 AATC-GAGGGTAAAATG
66 AATCTGAGGGTAAAACG
* * *
72533383 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGT
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTAT
*
72533447 AAATCGGA-GGTAAAACG
65 AAATCTGAGGGTAAAACG
* * * * *
72533464 GTAATTATGTAAATTGGGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
72533529 AA-CTGAGGGTAAAACG
66 AATCTGAGGGTAAAACG
* * ** *
72533545 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT-
1 GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
*
72533609 AACCTGAGGGTAAAACG
66 AATCTGAGGGTAAAACG
72533626 GTAATTATGTAAATCG
1 GTAATTATGTAAATCG
72533642 GGAGTCCTTT
Statistics
Matches: 230, Mismatches: 24, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
80 6 0.03
81 221 0.96
82 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (82 bp):
GTAATTATGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCTGAGGGTAAAACG
Found at i:72548536 original size:51 final size:51
Alignment explanation
Indices: 72548474--72548655 Score: 224
Period size: 51 Copynumber: 3.6 Consensus size: 51
72548464 ATCTGATACA
72548474 CATAGTAGCCTGCACTTAGTACTACACATGTGATTGAAGTTGTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGATTGAAGTTGTCGGGTACG
* * *** * *
72548525 CATAGTAGCCTGCACTTTGTACTACACATGTGACCT-AA-CCATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-TTGAAGTTGTCGGGTACG
** * * * *
72548575 TGTAGTAGCCTACACTTAGTACTATACATATGATCGAAGTTGTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGATTGAAGTTGTCGGGTACG
72548626 CATAGTAGCCTGCACTTAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
72548656 CGACCTAACC
Statistics
Matches: 103, Mismatches: 25, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
50 36 0.35
51 66 0.64
52 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGATTGAAGTTGTCGGGTACG
Found at i:72548583 original size:101 final size:101
Alignment explanation
Indices: 72548427--72548708 Score: 422
Period size: 101 Copynumber: 2.8 Consensus size: 101
72548417 CCAGTACATG
* * * * *
72548427 TAGTAGCCTACACTTAGTACTA-ACACGTGACCTAAGCATCTGATACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACGTAGTAGCCTGCACTT
*
72548491 AGTACTACACATGTGATTGAAGTTGTCGGGTACGCA
66 AGTACTACACATGTGATCGAAGTTGTCGGGTACGCA
* * *
72548527 TAGTAGCCTGCACTTTGTACTACACATGTGACCTAACCATCTGGTACATGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACGTAGTAGCCTGCACTT
* *
72548592 AGTACTATACATATGATCGAAGTTGTCGGGTACGCA
66 AGTACTACACATGTGATCGAAGTTGTCGGGTACGCA
* *
72548628 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGGAACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACGTAGTAGCCTGCACTT
* *
72548693 ATTACTACACACGTGA
66 AGTACTACACATGTGA
72548709 CCTAAAACCA
Statistics
Matches: 161, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
100 20 0.12
101 141 0.88
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACGTAGTAGCCTGCACTT
AGTACTACACATGTGATCGAAGTTGTCGGGTACGCA
Found at i:72548597 original size:50 final size:50
Alignment explanation
Indices: 72548376--72548759 Score: 333
Period size: 50 Copynumber: 7.6 Consensus size: 50
72548366 ATCTGTTATG
* * * **
72548376 CATAGTAGCCTGTACTTAGTACTACACATGTTACC-AACAATCCAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACA
** * * * *
72548425 TGTAGTAGCCTACACTTAGTACTA-ACACGTGACCTAAGCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACA
* *** * *
72548474 CATAGTAGCCTGCACTTAGTACTACACATGTGA-TTGAAGTTGTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CCATCTGGTACA
*
72548525 CATAGTAGCCTGCACTTTGTACTACACATGTGACCTAACCATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACA
** * * * * * *** * *
72548575 TGTAGTAGCCTACACTTAGTACTATACATATGATCGAAGTTGTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CCATCTGGTACA
* *
72548626 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGGAACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACA
* * * * ***
72548676 CGTAGTAGCCTGCACTTATTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATCTGGTACA
* *
72548728 CATAGTAGCCTGCACATAGTATTACACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
72548760 TTGTAATATC
Statistics
Matches: 259, Mismatches: 68, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
48 8 0.03
49 51 0.20
50 84 0.32
51 77 0.30
52 39 0.15
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACA
Found at i:72550106 original size:46 final size:46
Alignment explanation
Indices: 72550056--72550232 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
72550046 TGGTTGAGCA
*
72550056 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
72550102 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* * *
72550147 CATCCAAACTCTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
72550195 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
72550233 CGGGTTACAT
Statistics
Matches: 107, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:72550212 original size:93 final size:93
Alignment explanation
Indices: 72550053--72550224 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
72550043 GGATGGTTGA
* * *
72550053 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
72550118 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
72550146 GCATCCAAACTCT-TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GCATCCAAACT-TGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
72550210 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
72550225 CTTATGGACG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
93 73 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:72554174 original size:40 final size:40
Alignment explanation
Indices: 72554109--72554244 Score: 145
Period size: 40 Copynumber: 3.4 Consensus size: 40
72554099 ATTATGCTTG
* *
72554109 GCACTTAGTGTGCGTATCGAGATAGCTTTGGCTATATAAA
1 GCACTTAGTGTGCGAATCGAGATAGCTTCGGCTATATAAA
* **
72554149 GCACTTAGTGTGTGAATCG-GAATAGCTTCGGCTATATATG
1 GCACTTAGTGTGCGAATCGAG-ATAGCTTCGGCTATATAAA
*
72554189 GCACTTAAG-GTGCGAGA-CTGAGATAGCTTCGGCTATGA-AAG
1 GCACTT-AGTGTGCGA-ATC-GAGATAGCTTCGGCTAT-ATAAA
72554230 GCACTTAGTGTGCGA
1 GCACTTAGTGTGCGA
72554245 GATTATAATA
Statistics
Matches: 82, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
39 1 0.01
40 47 0.57
41 32 0.39
42 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATCGAGATAGCTTCGGCTATATAAA
Found at i:72556215 original size:24 final size:24
Alignment explanation
Indices: 72556188--72556233 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
72556178 AAGAGCCATA
72556188 ATTGGGAAATTCACAAAGAACCTT
1 ATTGGGAAATTCACAAAGAACCTT
** *
72556212 ATTGGGATGTTCATAAAGAACC
1 ATTGGGAAATTCACAAAGAACC
72556234 ATATCGGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (24 bp):
ATTGGGAAATTCACAAAGAACCTT
Found at i:72556353 original size:25 final size:26
Alignment explanation
Indices: 72556283--72556355 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
72556273 AGCGAGCATT
*
72556283 ATCGGGAAGCTCACAAAGAGCCAATTTA
1 ATCGGGAAGCTCA-TAAGAGCC-ATTTA
*
72556311 A-CAGGAAGCTCATGAAGAGCC-TTTA
1 ATCGGGAAGCTCAT-AAGAGCCATTTA
*
72556336 ATCGGGATGCTCATAAGAGC
1 ATCGGGAAGCTCATAAGAGC
72556356 TAAGGTGTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 11 0.28
26 10 0.26
27 17 0.44
28 1 0.03
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
ATCGGGAAGCTCATAAGAGCCATTTA
Found at i:72556817 original size:21 final size:21
Alignment explanation
Indices: 72556793--72556833 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
72556783 AAATTTAACA
*
72556793 TCAATTTAATCCATTTCATAC
1 TCAATTTAATCCAATTCATAC
*
72556814 TCAATTTAATTCAATTCATA
1 TCAATTTAATCCAATTCATA
72556834 TCTGAGGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.44
Consensus pattern (21 bp):
TCAATTTAATCCAATTCATAC
Found at i:72567903 original size:23 final size:23
Alignment explanation
Indices: 72567873--72567918 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
72567863 ATGTCTTCAG
72567873 CCCGTGTAACTCTCTATTTATGA
1 CCCGTGTAACTCTCTATTTATGA
*
72567896 CCCGTGTAACTCTCTGTTTATGA
1 CCCGTGTAACTCTCTATTTATGA
72567919 TGTCATCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (23 bp):
CCCGTGTAACTCTCTATTTATGA
Found at i:72569182 original size:48 final size:48
Alignment explanation
Indices: 72569107--72569234 Score: 157
Period size: 48 Copynumber: 2.7 Consensus size: 48
72569097 CACATGGTAG
* * **
72569107 GATGCCAATGCCATATCACAGATATGGTCTTACATGGGATCACCTATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACAGATC
* * ** *
72569155 GATGCCAATGCCATCTCCCAGACATGGTCTTACGTGGGATCGTAGATT
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACAGATC
* *
72569203 GATGCAAATGCCATGTCCCAGACATGGTCTTA
1 GATGCCAATGCCATATCCCAGACATGGTCTTA
72569235 TATTGATGCC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACAGATC
Found at i:72582432 original size:29 final size:29
Alignment explanation
Indices: 72582342--72582501 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
72582332 ACTCGATTTC
* * **
72582342 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
72582371 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
72582399 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
72582429 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
72582458 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
72582487 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
72582502 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:72597237 original size:39 final size:39
Alignment explanation
Indices: 72597106--72597296 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
72597096 GGATATAACG
* ** **
72597106 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
72597146 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
72597186 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
72597224 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
72597264 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
72597297 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:72597241 original size:78 final size:80
Alignment explanation
Indices: 72597146--72597296 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
72597136 GGTTATAGCG
* * * *
72597146 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
72597208 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
72597224 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
72597289 AGCCCGGA
66 AGCCCGGA
72597297 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:72605266 original size:39 final size:39
Alignment explanation
Indices: 72605135--72605325 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
72605125 GGATATAACG
* ** **
72605135 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
72605175 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
72605215 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
72605253 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
72605293 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
72605326 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:72605270 original size:78 final size:80
Alignment explanation
Indices: 72605175--72605325 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
72605165 GGTTATAGCG
* * * *
72605175 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
72605237 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
72605253 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
72605318 AGCCCGGA
66 AGCCCGGA
72605326 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:72617569 original size:26 final size:26
Alignment explanation
Indices: 72617533--72617584 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
72617523 CCATGCCCAG
72617533 GGTCGTGTCCCTCTCACAGCTGAGAC
1 GGTCGTGTCCCTCTCACAGCTGAGAC
72617559 GGTCGTGTCCCTCTCACAGCTGAGAC
1 GGTCGTGTCCCTCTCACAGCTGAGAC
72617585 ACACGCCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.35, G:0.27, T:0.23
Consensus pattern (26 bp):
GGTCGTGTCCCTCTCACAGCTGAGAC
Found at i:72619822 original size:42 final size:41
Alignment explanation
Indices: 72619704--72619823 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 41
72619694 AACTTATGAT
* * *
72619704 TTACGTGTAAGACCACGTCTGGGACGTTGGCATCG-TATTTGA
1 TTACGTGTAA-ACCATGTCTGGGTCGTT-GCATTGTTATTTGA
* * * * *
72619746 TTTCGTGTAAAACCCTATCTGGGATAGTAGCATTGTTATTTGA
1 TTACGTGT-AAACCATGTCTGGG-TCGTTGCATTGTTATTTGA
*
72619789 TTACATGTAAACCATGTCTGGGTCGTTGCCATTGT
1 TTACGTGTAAACCATGTCTGGGTCGTTG-CATTGT
72619824 ACGAGCTTTT
Statistics
Matches: 60, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
41 4 0.07
42 39 0.65
43 17 0.28
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (41 bp):
TTACGTGTAAACCATGTCTGGGTCGTTGCATTGTTATTTGA
Found at i:72623789 original size:687 final size:687
Alignment explanation
Indices: 72622476--72623848 Score: 2602
Period size: 687 Copynumber: 2.0 Consensus size: 687
72622466 GACAGAATTA
* *
72622476 GTCAGTTGAATAATGATTGAATTGTATTGATGGCTGCATACAATGGTTATAGTTAGGTAGTTACT
1 GTCAGTTGAATAATGATTGAATTGTATTGATGGCTGCATACAATGGTTATAGTCAGGCAGTTACT
72622541 ATGATTCCTTATGGGCATTCTATGTGTACATTTAACCTCAGAAGTATATATGACTATTAGTTTCA
66 ATGATTCCTTATGGGCATTCTATGTGTACATTTAACCTCAGAAGTATATATGACTATTAGTTTCA
72622606 GAAAGAATTCTTATCGTATGAGAACATTAGCTAAACATACTAATAGATGAAAGTATTGCTGGTCT
131 GAAAGAATTCTTATCGTATGAGAACATTAGCTAAACATACTAATAGATGAAAGTATTGCTGGTCT
*
72622671 GTTTGGGTTATATTCGACATTGCTATGTCTTTCTCTGGTATTTATTCCCATGTGGGAATAAGAAA
196 GTTTGGGTTATATTCAACATTGCTATGTCTTTCTCTGGTATTTATTCCCATGTGGGAATAAGAAA
* *
72622736 ATCAATGGTAAAAGTTTATATGATGCTAGTACTCTGTTTCTACTGGCTATTGGTCTGATGAATGT
261 ATCAACGGTAAAAGTTTATATGATGCTAGTACTCTATTTCTACTGGCTATTGGTCTGATGAATGT
*
72622801 AAGTGAAGATTATATTGCTTCTGTTACTGTGGATTTCAATATTTATGAGTGACATTGTTCTTTCT
326 AAGTGAAGATTATATTGCTTCTGTTACTGTGGATTTCAATATTTATGAGTGACATTGCTCTTTCT
*
72622866 GGATCTTATCTAGGATATCATCGGAATTGATATCATTCTACATGAGTTGTAACTTTCTGATATTC
391 GGATCTTATCTAGGATATCATCGGAATTGATATCATTCTACATGAGTTGTAACTTTCTAATATTC
*
72622931 TATGTAGCTTCAGACATTGAAATTTCGCTATTCTGGTTTTCTTATGATTCTATGTGATTATCTAT
456 TATGTAGCTTCAGACATTGAAATTTCGCTATTCTGGTTTCCTTATGATTCTATGTGATTATCTAT
72622996 AAGAAATATCTATTTGACGAAAATGGTTATATTTATTATAATCATAATTTATGTTCTGAAATTTG
521 AAGAAATATCTATTTGACGAAAATGGTTATATTTATTATAATCATAATTTATGTTCTGAAATTTG
72623061 GGAGTACTGCAGTACCGTTATCAGAGTTATAAAAGTTGTGCTTCTGCATTGGTTGTTGTCCAAAT
586 GGAGTACTGCAGTACCGTTATCAGAGTTATAAAAGTTGTGCTTCTGCATTGGTTGTTGTCCAAAT
*
72623126 CATATTTGATTTTCTTCTGGGTTCAAATTCTTTATTC
651 CATATTTGATTTTCTTCTGGGTTCAAATGCTTTATTC
*
72623163 GTCAGTTGAATAATGATTGAATTGTATTGATGGCTGCATATAATGGTTATAGTCAGGCAGTTACT
1 GTCAGTTGAATAATGATTGAATTGTATTGATGGCTGCATACAATGGTTATAGTCAGGCAGTTACT
*
72623228 ATGATTCCTTATGGGCATTCTATGTGTACATTTAACCTCAGAAGTATATATGACTGTTAGTTTCA
66 ATGATTCCTTATGGGCATTCTATGTGTACATTTAACCTCAGAAGTATATATGACTATTAGTTTCA
*
72623293 GAAAGAATTCTTATCGTATGAGAACATTAGCTAAACATACTAATAGATGAAAGTATTGTTGGTCT
131 GAAAGAATTCTTATCGTATGAGAACATTAGCTAAACATACTAATAGATGAAAGTATTGCTGGTCT
72623358 GTTTGGGTTATATTCAACATTGCTATGTCTTTCTCTGGTATTTATTCCCATGTGGGAATAAGAAA
196 GTTTGGGTTATATTCAACATTGCTATGTCTTTCTCTGGTATTTATTCCCATGTGGGAATAAGAAA
* *
72623423 ATCAACGGTAAAAGTTTTTATGATGCTAGTACTCTATTTCTACTGGCTATTGTTCTGATGAATGT
261 ATCAACGGTAAAAGTTTATATGATGCTAGTACTCTATTTCTACTGGCTATTGGTCTGATGAATGT
72623488 AAGTGAAGATTATATTGCTTCTGTTACTGTGGATTTCAATATTTATGAGTGACATTGCTCTTTCT
326 AAGTGAAGATTATATTGCTTCTGTTACTGTGGATTTCAATATTTATGAGTGACATTGCTCTTTCT
72623553 GGATCTTATCTAGGATATCATCGGAATTGATATCATTCTACATGAGTTGTAACTTTCTAATATTC
391 GGATCTTATCTAGGATATCATCGGAATTGATATCATTCTACATGAGTTGTAACTTTCTAATATTC
* *
72623618 TGTGTAGCTTCAGACATTGAAATTTTGCTATTCTGGTTTCCTTATGATTCTATGTGATTATCTAT
456 TATGTAGCTTCAGACATTGAAATTTCGCTATTCTGGTTTCCTTATGATTCTATGTGATTATCTAT
72623683 AAGAAATATCTATTTGACGAAAATGGTTATATTTATTATAATCATAATTTATGTTCTGAAATTTG
521 AAGAAATATCTATTTGACGAAAATGGTTATATTTATTATAATCATAATTTATGTTCTGAAATTTG
72623748 GGAGTACTGCAGTACCGTTATCAGAGTTATAAAAGTTGTGCTTCTGCATTGGTTGTTGTCCAAAT
586 GGAGTACTGCAGTACCGTTATCAGAGTTATAAAAGTTGTGCTTCTGCATTGGTTGTTGTCCAAAT
72623813 CATATTTGATTTTCTTCTGGGTTCAAATGCTTTATT
651 CATATTTGATTTTCTTCTGGGTTCAAATGCTTTATT
72623849 AACAGCCAGG
Statistics
Matches: 670, Mismatches: 16, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
687 670 1.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (687 bp):
GTCAGTTGAATAATGATTGAATTGTATTGATGGCTGCATACAATGGTTATAGTCAGGCAGTTACT
ATGATTCCTTATGGGCATTCTATGTGTACATTTAACCTCAGAAGTATATATGACTATTAGTTTCA
GAAAGAATTCTTATCGTATGAGAACATTAGCTAAACATACTAATAGATGAAAGTATTGCTGGTCT
GTTTGGGTTATATTCAACATTGCTATGTCTTTCTCTGGTATTTATTCCCATGTGGGAATAAGAAA
ATCAACGGTAAAAGTTTATATGATGCTAGTACTCTATTTCTACTGGCTATTGGTCTGATGAATGT
AAGTGAAGATTATATTGCTTCTGTTACTGTGGATTTCAATATTTATGAGTGACATTGCTCTTTCT
GGATCTTATCTAGGATATCATCGGAATTGATATCATTCTACATGAGTTGTAACTTTCTAATATTC
TATGTAGCTTCAGACATTGAAATTTCGCTATTCTGGTTTCCTTATGATTCTATGTGATTATCTAT
AAGAAATATCTATTTGACGAAAATGGTTATATTTATTATAATCATAATTTATGTTCTGAAATTTG
GGAGTACTGCAGTACCGTTATCAGAGTTATAAAAGTTGTGCTTCTGCATTGGTTGTTGTCCAAAT
CATATTTGATTTTCTTCTGGGTTCAAATGCTTTATTC
Found at i:72625835 original size:50 final size:51
Alignment explanation
Indices: 72625708--72625839 Score: 149
Period size: 52 Copynumber: 2.6 Consensus size: 51
72625698 GTTGTGAGAA
* * **
72625708 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGG-TTTAGGT
* * * * * *
72625760 CACGTGTGTAGTCCTAATTGTAGGCTACTACGTGTACCAGATGG-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTTTAGGT
*
72625810 CACATGTGTAGTAGTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
72625840 TGCGTACCCT
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
50 31 0.48
52 34 0.52
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (51 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAAATGGTTTAGGT
Found at i:72625847 original size:50 final size:50
Alignment explanation
Indices: 72625708--72625896 Score: 171
Period size: 50 Copynumber: 3.7 Consensus size: 50
72625698 GTTGTGAGAA
* ***
72625708 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGG--TTAGGT
* * * * * *
72625760 CACGTGTGTAGTCCTAATTGTAGGCTACTACGTGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGGTTAGGT
* * ** * * *
72625810 CACATGTGTAGTAGTAAGTGCAGGCTACTATGCGTACCCTATAGATTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAAT-GGTTAGGT
* * *
72625861 CACATGTGTGGTACTAAGTGCATGCCACTATGTGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA
72625897 AAAGATAGCT
Statistics
Matches: 109, Mismatches: 27, Indels: 3
0.78 0.19 0.02
Matches are distributed among these distances:
50 39 0.36
51 36 0.33
52 34 0.31
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGGTTAGGT
Found at i:72625939 original size:51 final size:51
Alignment explanation
Indices: 72625867--72625989 Score: 135
Period size: 51 Copynumber: 2.4 Consensus size: 51
72625857 CGATCACATG
* * *
72625867 TGTGGTACTAAGTGCATGCCACTATGTGT-AA-AAGATAGCTTT-AGTCACAAC
1 TGTGGTACTATGTGCAGGCCACT-T-TGTAAAGAAGATAGCTTTGACT-ACAAC
* * *
72625918 TGTGGTACTATGTGAAGGCCACTTTGTAAAGAAGGTAGCTTTGACTACAAG
1 TGTGGTACTATGTGCAGGCCACTTTGTAAAGAAGATAGCTTTGACTACAAC
*
72625969 GGTGGTACTATGTGCAGGCCA
1 TGTGGTACTATGTGCAGGCCA
72625990 TCGGGCATTC
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
49 3 0.05
50 3 0.05
51 53 0.87
52 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (51 bp):
TGTGGTACTATGTGCAGGCCACTTTGTAAAGAAGATAGCTTTGACTACAAC
Found at i:72630900 original size:43 final size:43
Alignment explanation
Indices: 72630807--72630926 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
72630797 GACTTATGCT
* ** *
72630807 TTACGTGTAAGACCACGA-CTGGGACGTTTCCATCG-TATTTGA
1 TTACATGTAAGACCAC-ATCTGGGACGTTGGCATTGATATTTGA
* *
72630849 TTTCATGTAAGA-CACTGTCTGGGACAG-TGGCATTGATATTTGA
1 TTACATGTAAGACCAC-ATCTGGGAC-GTTGGCATTGATATTTGA
72630892 TTACATGTAAGACCACATCTGGGACGTTGGCATTG
1 TTACATGTAAGACCACATCTGGGACGTTGGCATTG
72630927 TACGAGCTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
41 3 0.05
42 23 0.36
43 35 0.55
44 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TTACATGTAAGACCACATCTGGGACGTTGGCATTGATATTTGA
Found at i:72633428 original size:28 final size:28
Alignment explanation
Indices: 72633359--72633459 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72633349 GACAAGATTG
* * * *
72633359 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72633389 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72633417 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
72633446 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72633460 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72641388 original size:28 final size:28
Alignment explanation
Indices: 72641319--72641419 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72641309 GACAAGATTG
* * * *
72641319 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72641349 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72641377 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
72641406 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72641420 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72644046 original size:22 final size:22
Alignment explanation
Indices: 72644021--72644064 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
72644011 AAAAAGGGAA
*
72644021 AAATCAAGCAAAATTTTCTCAT
1 AAATCAAGCAAAATTTGCTCAT
72644043 AAATCAAGCAAAATTTGCTCAT
1 AAATCAAGCAAAATTTGCTCAT
72644065 CTTCTCCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (22 bp):
AAATCAAGCAAAATTTGCTCAT
Found at i:72646502 original size:40 final size:40
Alignment explanation
Indices: 72646255--72646500 Score: 307
Period size: 40 Copynumber: 6.2 Consensus size: 40
72646245 TGGAATACAA
* * *
72646255 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
72646295 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
*
72646335 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
*
72646375 CCGGATTTAACGACTTGCCCGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
* * * * *
72646415 CCGGATGTAGTC-ACTAGCAC-AATTGCCTTCAGGTCTTAAC
1 CCGGATTTA-ACGACTTGCACGAA-TGCCTTCGGGTCTTAGC
* * * ** * *
72646455 CCGGATATAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
72646495 CCGGAT
1 CCGGAT
72646501 ATCATTCAAT
Statistics
Matches: 183, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 177 0.97
41 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:72648347 original size:93 final size:93
Alignment explanation
Indices: 72648236--72648406 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
72648226 TTGGCATCGT
* *
72648236 TATGTAATCCCATGTAAGACCATGT-TCGGGACATGGCATTGACACCGATATG-AGACATCGTGT
1 TATGTAATCCCATATAAGACCATGTCT-GGGACATGGCATTGACACCGATATGCAGAC-TCATGT
72648299 AAGACCATAGCTGGGCTATCGGCTTTGATA
64 AAGACCATAGCTGGGCTATCGGCTTTGATA
* * *
72648329 TATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGACATCGATATGCAGTCTCATGTAA
1 TATGTAATCCCATATAAGACCATGTCTGGGACATGGCATTGACACCGATATGCAGACTCATGTAA
*
72648394 GACCATATCTGGG
66 GACCATAGCTGGG
72648407 ATATGGCATT
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
93 66 0.94
94 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (93 bp):
TATGTAATCCCATATAAGACCATGTCTGGGACATGGCATTGACACCGATATGCAGACTCATGTAA
GACCATAGCTGGGCTATCGGCTTTGATA
Found at i:72648396 original size:48 final size:47
Alignment explanation
Indices: 72648175--72648417 Score: 185
Period size: 48 Copynumber: 5.1 Consensus size: 47
72648165 CTAGGATATA
* * * *
72648175 GCATTGGCATTGATGTGAGATCCCATGTCAA-ACCTTGTCTGGGACATG
1 GCATTGACATCGATATGAG-TCCCATGT-AAGACCATGTCTGGGACATG
* * * *
72648223 GCTTTGGCATCGTTATGTAATCCCATGTAAGACCATGT-TCGGGACATG
1 GCATTGACATCGATATG-AGTCCCATGTAAGACCATGTCT-GGGACATG
* * * *
72648271 GCATTGACACCGATATGAGACATCGTGTAAGACCATAG-CTGGG-CTATCG
1 GCATTGACATCGATATGAGTC-CCATGTAAGACCAT-GTCTGGGAC-AT-G
* * * *
72648320 GCTTTGATAT--ATGTGA-TCCCATATAAGACCATGTCTGGGACATG
1 GCATTGACATCGATATGAGTCCCATGTAAGACCATGTCTGGGACATG
* * *
72648364 GCATTGACATCGATATGCAGTCTCATGTAAGACCATATCTGGGATATG
1 GCATTGACATCGATATG-AGTCCCATGTAAGACCATGTCTGGGACATG
72648412 GCATTG
1 GCATTG
72648418 GCACCTTACC
Statistics
Matches: 152, Mismatches: 29, Indels: 28
0.73 0.14 0.13
Matches are distributed among these distances:
44 10 0.07
45 18 0.12
46 6 0.04
47 12 0.08
48 95 0.62
49 11 0.07
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (47 bp):
GCATTGACATCGATATGAGTCCCATGTAAGACCATGTCTGGGACATG
Found at i:72650721 original size:40 final size:40
Alignment explanation
Indices: 72650659--72650915 Score: 326
Period size: 40 Copynumber: 6.5 Consensus size: 40
72650649 AAGCCAAGTA
* * *
72650659 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAA-TG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCAC-AACTG
* * *
72650698 CCTTCGGGACATAGCCCGGATATAGTAACTCGTACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAACTG
* *
72650738 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAACTG
72650778 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAACTG
*
72650818 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAACTG
* * * * *
72650858 CCTTC-GGACTTAGCCC-GAAACTAGTAATTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAACTG
72650897 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72650916 TTATCGTCCG
Statistics
Matches: 195, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
38 3 0.02
39 43 0.22
40 148 0.76
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAACTG
Found at i:72658858 original size:40 final size:40
Alignment explanation
Indices: 72658796--72659011 Score: 305
Period size: 40 Copynumber: 5.4 Consensus size: 40
72658786 AAGCCAAGTA
* * * *
72658796 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
72658835 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72658875 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72658915 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72658955 CCTTCGGGACTTAGCCCGGA-ACTAGT-ACTTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAAC-TCGCACAAATG
72658995 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
72659012 AGTTATCATC
Statistics
Matches: 163, Mismatches: 10, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
39 15 0.09
40 148 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72667022 original size:25 final size:25
Alignment explanation
Indices: 72666988--72667051 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
72666978 TCTGTAAAAT
72666988 CAATTGAAACGGTGCGTGGT-GGAAA
1 CAATTGAAACGGTGCGTGGTAGG-AA
72667013 CAATTGAAACGGTGCGTGGTAGGAA
1 CAATTGAAACGGTGCGTGGTAGGAA
72667038 CAATTGAAACGGTG
1 CAATTGAAACGGTG
72667052 AGTTTTGAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 36 0.95
26 2 0.05
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.20
Consensus pattern (25 bp):
CAATTGAAACGGTGCGTGGTAGGAA
Found at i:72668219 original size:7 final size:7
Alignment explanation
Indices: 72668207--72668318 Score: 68
Period size: 7 Copynumber: 15.7 Consensus size: 7
72668197 ACTAATTAAT
72668207 CTAAACC
1 CTAAACC
72668214 CTAAACC
1 CTAAACC
*
72668221 TCTTAACTC
1 -CTAAAC-C
*
72668230 CT-ATCC
1 CTAAACC
*
72668236 CATAAACA
1 C-TAAACC
72668244 CTAAACC
1 CTAAACC
72668251 CTAAACC
1 CTAAACC
*
72668258 CTTAACC
1 CTAAACC
*
72668265 CTTAACC
1 CTAAACC
*
72668272 CCAAACC
1 CTAAACC
*
72668279 CTTACACC
1 C-TAAACC
*
72668287 TTAAACTC
1 CTAAAC-C
72668295 C--AACC
1 CTAAACC
*
72668300 CTAACCC
1 CTAAACC
72668307 CTAAACC
1 CTAAACC
*
72668314 TTAAA
1 CTAAA
72668319 TATAATCCCT
Statistics
Matches: 81, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
5 2 0.02
6 5 0.06
7 58 0.72
8 15 0.19
9 1 0.01
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:72668414 original size:46 final size:46
Alignment explanation
Indices: 72668361--72668454 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
72668351 CTTCAAATAC
* * * *
72668361 TAGTTAACTCCTAAACCTTGAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCATAAACCCTAAACCATATATATTAAACCA
*
72668407 TAGTTAACTCATAAACCATAAACCCTAAATCATATATATTAAACCA
1 TAGTTAACTCATAAACCATAAACCCTAAACCATATATATTAAACCA
72668453 TA
1 TA
72668455 AACCATAAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.44, C:0.24, G:0.03, T:0.29
Consensus pattern (46 bp):
TAGTTAACTCATAAACCATAAACCCTAAACCATATATATTAAACCA
Found at i:72668721 original size:40 final size:40
Alignment explanation
Indices: 72668634--72668751 Score: 146
Period size: 41 Copynumber: 2.9 Consensus size: 40
72668624 ACTTTTAGCA
* * *
72668634 GCGTTTTTCCAAAAGCGCCGCTAATGGTCTGGTTTTTTGCG
1 GCGTTTTTCCAAAAGCGCCGCTAATGCTCT-ATTTTTCGCG
72668675 GCGTTTTTCCAAAAGCGCCGCTAATGCTCTATTTTTCGCG
1 GCGTTTTTCCAAAAGCGCCGCTAATGCTCTATTTTTCGCG
** * * *
72668715 GCGTTTTTGGTAAAAACGCTGCTATTGCTCTATTTTT
1 GCGTTTTT-CCAAAAGCGCCGCTAATGCTCTATTTTT
72668752 AGTGGTGTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 16 0.24
41 52 0.76
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (40 bp):
GCGTTTTTCCAAAAGCGCCGCTAATGCTCTATTTTTCGCG
Found at i:72668782 original size:40 final size:41
Alignment explanation
Indices: 72668626--72668783 Score: 133
Period size: 41 Copynumber: 3.9 Consensus size: 41
72668616 GTTATATGAC
* ** * * * *
72668626 TTTTAGCAGCGTTTTT-CCAAAAGCGCCGCTAATGGTCTGGT
1 TTTTAGCGGCGTTTTTGGTAAAAACGCCGCTATTGCTCT-AT
* ** * *
72668667 TTTTTGCGGCGTTTTT-CCAAAAGCGCCGCTAATGCTCTAT
1 TTTTAGCGGCGTTTTTGGTAAAAACGCCGCTATTGCTCTAT
* *
72668707 TTTTCGCGGCGTTTTTGGTAAAAACGCTGCTATTGCTCTAT
1 TTTTAGCGGCGTTTTTGGTAAAAACGCCGCTATTGCTCTAT
* * *
72668748 TTTTAGTGGTGTTTTTGGT-AAAACGCCACTATTGCT
1 TTTTAGCGGCGTTTTTGGTAAAAACGCCGCTATTGCT
72668784 ATGTGTTTTA
Statistics
Matches: 101, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
40 31 0.31
41 70 0.69
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.39
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTGGTAAAAACGCCGCTATTGCTCTAT
Found at i:72670055 original size:69 final size:69
Alignment explanation
Indices: 72669969--72670127 Score: 246
Period size: 69 Copynumber: 2.3 Consensus size: 69
72669959 AAAAATGTAC
* * **
72669969 AAGACCATGGTTGGACCATGGCAATGTTTGCGTAAGACCATAGCGAGGCTATGGTAGTTTTTCAA
1 AAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCATAGCGAGACTATGACAGTTTTTCAA
72670034 ATGT
66 ATGT
** *
72670038 AAGATGATGGTTGGACCATGGCAATGTTTATGTAAGACCATAGCGAGACTATGACAGTTTTTCAA
1 AAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCATAGCGAGACTATGACAGTTTTTCAA
72670103 ATGT
66 ATGT
*
72670107 AAGACCATGATTGGACCATGG
1 AAGACCATGGTTGGACCATGG
72670128 AAGTGTATAT
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 80 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (69 bp):
AAGACCATGGTTGGACCATGGCAATGTTTACGTAAGACCATAGCGAGACTATGACAGTTTTTCAA
ATGT
Found at i:72675485 original size:2 final size:2
Alignment explanation
Indices: 72675478--72675502 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
72675468 ACAGCTTTAC
72675478 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
72675503 AATGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72678693 original size:16 final size:17
Alignment explanation
Indices: 72678672--72678705 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
72678662 TGAATTAAAA
*
72678672 TTTAAAAT-TTATTTAT
1 TTTAAAATATTATATAT
72678688 TTTAAAATATTATATAT
1 TTTAAAATATTATATAT
72678705 T
1 T
72678706 AATTATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTAAAATATTATATAT
Found at i:72682306 original size:33 final size:34
Alignment explanation
Indices: 72682255--72682321 Score: 118
Period size: 33 Copynumber: 2.0 Consensus size: 34
72682245 CTAAGCGTGG
*
72682255 CAATTGAGTTTTTCAAAAAGAGTGAAATTGCTTT
1 CAATTAAGTTTTTCAAAAAGAGTGAAATTGCTTT
72682289 CAATTAAG-TTTTCAAAAAGAGTGAAATTGCTTT
1 CAATTAAGTTTTTCAAAAAGAGTGAAATTGCTTT
72682322 TCTTTAATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 25 0.78
34 7 0.22
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (34 bp):
CAATTAAGTTTTTCAAAAAGAGTGAAATTGCTTT
Found at i:72682494 original size:17 final size:17
Alignment explanation
Indices: 72682465--72682515 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
72682455 AAATTATAAA
72682465 AAAAATTCA-AAATTTT
1 AAAAATTCATAAATTTT
* *
72682481 AAAAATTTATAAATTAT
1 AAAAATTCATAAATTTT
72682498 AAAAAGTTCATAAATTTT
1 AAAAA-TTCATAAATTTT
72682516 TTTTTTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 8 0.28
17 11 0.38
18 10 0.34
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (17 bp):
AAAAATTCATAAATTTT
Found at i:72686359 original size:39 final size:39
Alignment explanation
Indices: 72686316--72686393 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
72686306 CTAGGATAGA
*
72686316 GACTCACCATATACTTACCTATACTGTAGCTTGAAGTTT
1 GACTCACCAGATACTTACCTATACTGTAGCTTGAAGTTT
72686355 GACTCACCAGATACTTACCTATACTGTAGCTTGAAGTTT
1 GACTCACCAGATACTTACCTATACTGTAGCTTGAAGTTT
72686394 CAAACTTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (39 bp):
GACTCACCAGATACTTACCTATACTGTAGCTTGAAGTTT
Found at i:72689984 original size:30 final size:30
Alignment explanation
Indices: 72689829--72689984 Score: 104
Period size: 30 Copynumber: 5.3 Consensus size: 30
72689819 TTATCGACAA
* *
72689829 ATGAAAAGGGATAGCTTCGGCTATCGAA-T
1 ATGAAAAGGGATAGCTTTGGCTATCAAATT
* * **
72689858 ATGAAAAGGGATATCTTTGGTTAT-TGATT
1 ATGAAAAGGGATAGCTTTGGCTATCAAATT
* * * * * *
72689887 ATGCAAAGGGAT-GGTGATGACCATCAAACT
1 ATGAAAAGGGATAGCT-TTGGCTATCAAATT
* * **
72689917 ATGAAAAGGGATGGCTTCGGCTAT-TGATCT
1 ATGAAAAGGGATAGCTTTGGCTATCAAAT-T
* *
72689947 ATAAAAAGGGATAGCTTTGGTTATCAAATT
1 ATGAAAAGGGATAGCTTTGGCTATCAAATT
72689977 ATGAAAAG
1 ATGAAAAG
72689985 CGATGGTGAC
Statistics
Matches: 90, Mismatches: 31, Indels: 11
0.68 0.23 0.08
Matches are distributed among these distances:
28 2 0.02
29 38 0.42
30 46 0.51
31 4 0.04
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTTGGCTATCAAATT
Found at i:72690001 original size:30 final size:30
Alignment explanation
Indices: 72689967--72690024 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
72689957 ATAGCTTTGG
**
72689967 TTATCAAATTATGAAAAGCGATGGTGACAA
1 TTATCAAACAATGAAAAGCGATGGTGACAA
* * *
72689997 TTATCGAGCAATGAAAAGGGATGGTGAC
1 TTATCAAACAATGAAAAGCGATGGTGAC
72690025 GACCATTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.40, C:0.10, G:0.26, T:0.24
Consensus pattern (30 bp):
TTATCAAACAATGAAAAGCGATGGTGACAA
Found at i:72700417 original size:30 final size:30
Alignment explanation
Indices: 72700353--72700423 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
72700343 AGACTCACTG
* * *
72700353 TTAACTTAATTTAATAACATTGTATATATT
1 TTAATTTAATTTAATAACATTATATATATA
*
72700383 TTAATTTAATTTAATCACATTATATA-ATAA
1 TTAATTTAATTTAATAACATTATATATAT-A
*
72700413 TTAATTAAATT
1 TTAATTTAATT
72700424 AAGTTAACTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 2 0.06
30 33 0.94
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (30 bp):
TTAATTTAATTTAATAACATTATATATATA
Found at i:72707889 original size:79 final size:79
Alignment explanation
Indices: 72707758--72707916 Score: 300
Period size: 79 Copynumber: 2.0 Consensus size: 79
72707748 ATGAAAGATC
*
72707758 GTCCTATTTTTATGATGCTTTTATTGGTCTTGCATTGTATCTTTTACACTTTACATTCAAGCTAA
1 GTCCTATTTTTATGATGCTTTTATTGGTCTCGCATTGTATCTTTTACACTTTACATTCAAGCTAA
72707823 AAATGAATATGAAA
66 AAATGAATATGAAA
*
72707837 GTCCTATTTTTATGATGCTTTTATTGTTCTCGCATTGTATCTTTTACACTTTACATTCAAGCTAA
1 GTCCTATTTTTATGATGCTTTTATTGGTCTCGCATTGTATCTTTTACACTTTACATTCAAGCTAA
72707902 AAATGAATATGAAA
66 AAATGAATATGAAA
72707916 G
1 G
72707917 AGACATCGAT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (79 bp):
GTCCTATTTTTATGATGCTTTTATTGGTCTCGCATTGTATCTTTTACACTTTACATTCAAGCTAA
AAATGAATATGAAA
Found at i:72710067 original size:20 final size:20
Alignment explanation
Indices: 72710044--72710084 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
72710034 AGCAACTAAA
72710044 ATAAACTACATTCAACTTAT
1 ATAAACTACATTCAACTTAT
*
72710064 ATAAACTATATTCAACTTAT
1 ATAAACTACATTCAACTTAT
72710084 A
1 A
72710085 CTATTATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (20 bp):
ATAAACTACATTCAACTTAT
Found at i:72710284 original size:13 final size:13
Alignment explanation
Indices: 72710266--72710290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72710256 TACCATTCAT
72710266 ACACATATCCAAA
1 ACACATATCCAAA
72710279 ACACATATCCAA
1 ACACATATCCAA
72710291 TGAATTCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (13 bp):
ACACATATCCAAA
Found at i:72715375 original size:40 final size:40
Alignment explanation
Indices: 72715270--72715460 Score: 220
Period size: 40 Copynumber: 4.8 Consensus size: 40
72715260 CGAATGGTGT
* * * * * *
72715270 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * * * *
72715311 CTGGGTCAATTCCCGAAGGAATTTGTGCTAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
72715351 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
72715391 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
72715431 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
72715461 ATCACTATAA
Statistics
Matches: 128, Mismatches: 22, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
40 106 0.83
41 22 0.17
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:72715445 original size:80 final size:80
Alignment explanation
Indices: 72715269--72715488 Score: 235
Period size: 80 Copynumber: 2.7 Consensus size: 80
72715259 TCGAATGGTG
* * * * * *
72715269 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCTGGGTCAATTCCCGAAGGAATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAAGTCCCGAAGGAATT
* *
72715334 TGTGCTAGTTACCAAA
65 CGTGCGAGTTACCAAA
* * * * *
72715350 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGAATTC
*
72715415 GTGCGAGTTACTAAA
66 GTGCGAGTTACCAAA
* * * * * *
72715430 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAA-GTCCCGAAG
72715489 ACAATCGAGC
Statistics
Matches: 115, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 2 0.02
80 87 0.76
81 26 0.23
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGAATTC
GTGCGAGTTACCAAA
Found at i:72715475 original size:40 final size:39
Alignment explanation
Indices: 72715270--72715502 Score: 186
Period size: 40 Copynumber: 5.8 Consensus size: 39
72715260 CGAATGGTGT
** * *
72715270 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * * *
72715310 TCTGGG-TCAATTCCCGAAGG-AATTTGTGCTAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCAA-TTGTGCGAGTTA-CTAAA
* * *
72715351 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
*
72715391 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* * *
72715430 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
* * *
72715471 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAA-GTCCCGAAGGCAATTGTGCGAGT
72715503 CGCTATATCC
Statistics
Matches: 160, Mismatches: 22, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
39 8 0.05
40 120 0.75
41 32 0.20
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:72715484 original size:120 final size:121
Alignment explanation
Indices: 72715270--72715488 Score: 275
Period size: 120 Copynumber: 1.8 Consensus size: 121
72715260 CGAATGGTGT
* * *
72715270 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCTGGGTCAATTCCCGAAGGAATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGAATTT
* * * *
72715335 GTGCTAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
72715391 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAA-
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGG-AAT
* *
72715453 TTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
64 TTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAAG
72715489 ACAATCGAGC
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 3 0.04
120 53 0.64
121 27 0.33
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGAATTT
GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:72723248 original size:47 final size:43
Alignment explanation
Indices: 72723184--72723349 Score: 138
Period size: 47 Copynumber: 3.6 Consensus size: 43
72723174 ATGATAGCCC
*
72723184 GTGTAAGACCACGTCTGGGACATGGCATCGGTATAGAGGTGAGTGCCA
1 GTGTAAGA-CATGTCTGGGACAT-GCATC-G-ATAGA-GTGAGTGCCA
* *
72723232 GTGTAAGACATGTCTGGGACATGCATCAGCCTTGA-TGATGTTAGCCA
1 GTGTAAGACATGTCTGGGACATGCATC-G-ATAGAGTGA-G-T-GCCA
* * ** *
72723279 GTGTAAGACATGTCTCGGACATTCATCGACTA-AGTTTCGTGCTA
1 GTGTAAGACATGTCTGGGACATGCATCGA-TAGAG-TGAGTGCCA
72723323 GTGTAAGACATGTCTGGGACATGCATC
1 GTGTAAGACATGTCTGGGACATGCATC
72723350 AGCACGTATA
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
44 31 0.32
45 3 0.03
46 13 0.13
47 43 0.44
48 8 0.08
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
GTGTAAGACATGTCTGGGACATGCATCGATAGAGTGAGTGCCA
Found at i:72723254 original size:94 final size:93
Alignment explanation
Indices: 72723093--72723397 Score: 273
Period size: 94 Copynumber: 3.3 Consensus size: 93
72723083 AGAACTAGTA
* * * * ** *
72723093 TAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGAGGTGTCTAGGAC
1 TAAGACCATGTCTGGGACATGGCATCG-GATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
*
72723158 ATGCATCAGCC-GCACCATGATAGCCCGTG
65 ATGCATCAGCCTG-ACCATGATAGCCAGTG
* * *
72723187 TAAGACCACGTCTGGGACATGGCATCGGTATAGAGGTGAGTGCCAGTGTAAGACATGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGG-ATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
** *
72723252 ATGCATCAGCCTTGATGATGTTAGCCAGTG
65 ATGCATCAGCC-TGACCATGATAGCCAGTG
* * * **
72723282 TAAGA-CATGTCTCGGACAT-TCATC-GACTA-AGTTTCGTGCTAGTGTAAGACATGTCTGGGAC
1 TAAGACCATGTCTGGGACATGGCATCGGA-TAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
* * *
72723343 ATGCATCAGCACGTATACACA--AGAGCTAGTG
65 ATGCATCAGC-C-T-GAC-CATGATAGCCAGTG
*
72723374 TAAGACCATGTCTGGGACACGGCA
1 TAAGACCATGTCTGGGACATGGCA
72723398 GCGGCAACTT
Statistics
Matches: 171, Mismatches: 31, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
91 39 0.23
92 17 0.10
93 17 0.10
94 80 0.47
95 17 0.10
96 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (93 bp):
TAAGACCATGTCTGGGACATGGCATCGGATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACA
TGCATCAGCCTGACCATGATAGCCAGTG
Found at i:72730828 original size:44 final size:45
Alignment explanation
Indices: 72730716--72730889 Score: 149
Period size: 44 Copynumber: 3.7 Consensus size: 45
72730706 ATAGAGGTGA
*
72730716 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATGAT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAATGAT
* * * **
72730761 GCTAGCCAGTGTAAGA-AGTGTCTGGGAAATGCATTAG-CT-AAGTTTT
1 G-T-GCTAGTGTAAGACA-TGTCTGGGACATGCATCAGCCTCAA-TGAT
* *
72730807 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGTATACACGA-
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGC-C-T-CA-ATGAT
*
72730855 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
72730890 CGCTTCGATA
Statistics
Matches: 103, Mismatches: 13, Indels: 21
0.75 0.09 0.15
Matches are distributed among these distances:
44 28 0.27
45 5 0.05
46 8 0.08
47 28 0.27
48 13 0.13
49 15 0.15
50 6 0.06
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (45 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAATGAT
Found at i:72747777 original size:2 final size:2
Alignment explanation
Indices: 72747770--72747799 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
72747760 TGATTTGTGC
72747770 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72747800 AGTTAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72767532 original size:28 final size:29
Alignment explanation
Indices: 72767479--72767533 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
72767469 TACTGTGGTT
72767479 TTCACATGGCCAAGCACACGCCCGTGTCC
1 TTCACATGGCCAAGCACACGCCCGTGTCC
*
72767508 TTCACATGGCCTAG-ACACGCCCGTGT
1 TTCACATGGCCAAGCACACGCCCGTGT
72767534 GGTCGCCCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.20, C:0.38, G:0.22, T:0.20
Consensus pattern (29 bp):
TTCACATGGCCAAGCACACGCCCGTGTCC
Found at i:72781788 original size:15 final size:14
Alignment explanation
Indices: 72781770--72781824 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 14
72781760 TCCATAACGG
72781770 AGAAATCCAAAATA
1 AGAAATCCAAAATA
*
72781784 TAGAAATCCAACATAA
1 -AGAAATCCAAAAT-A
*
72781800 AGAAATCCAAAACA
1 AGAAATCCAAAATA
72781814 AGAAAATCCAA
1 AG-AAATCCAA
72781825 TCACGATACC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
14 3 0.09
15 31 0.89
16 1 0.03
ACGTcount: A:0.62, C:0.18, G:0.07, T:0.13
Consensus pattern (14 bp):
AGAAATCCAAAATA
Found at i:72792481 original size:18 final size:18
Alignment explanation
Indices: 72792458--72792497 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
72792448 TGTAATTATG
72792458 TGAATTACTGGATGAGTA
1 TGAATTACTGGATGAGTA
72792476 TGAATTACTGGATGAGTA
1 TGAATTACTGGATGAGTA
72792494 TGAA
1 TGAA
72792498 CCATCTCGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.33
Consensus pattern (18 bp):
TGAATTACTGGATGAGTA
Found at i:72794963 original size:46 final size:45
Alignment explanation
Indices: 72794913--72795088 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
72794903 TGGTTGAGCA
*
72794913 TCTGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
72794959 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTTA--GATGTAACTAGG
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
72795004 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
72795052 CCTGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72795089 GCGGGTTAAA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 60 0.55
47 28 0.26
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.33
Consensus pattern (45 bp):
TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:72795069 original size:93 final size:93
Alignment explanation
Indices: 72794910--72795081 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
72794900 GGATGGTTGA
* * * *
72794910 GCATCTGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
72794975 TGAGTCCGAGTTCGTTAGATGTAACTAG
66 TGAGTCCGAGTTCGTTAGATGTAACTAG
* * *
72795003 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCTGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
72795068 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
72795082 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTTAGATGTAACTAG
Found at i:72796881 original size:68 final size:67
Alignment explanation
Indices: 72796809--72796958 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
72796799 CATCATGTGT
* * * *
72796809 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
72796871 ATGTAG
62 ATGTAG
** * *
72796877 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
72796942 AG
66 AG
72796944 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
72796959 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:72796914 original size:64 final size:64
Alignment explanation
Indices: 72796833--72797016 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
72796823 AGACATTATG
* *
72796833 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
72796897 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
72796962 AA
63 AA
* * * *
72796964 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
72797017 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:72801323 original size:68 final size:67
Alignment explanation
Indices: 72801251--72801400 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
72801241 CATCATGTGT
* * * *
72801251 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
72801313 ATGTAG
62 ATGTAG
** * *
72801319 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
72801384 AG
66 AG
72801386 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
72801401 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:72801356 original size:64 final size:64
Alignment explanation
Indices: 72801275--72801458 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
72801265 AGACATTATG
* *
72801275 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
72801339 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
72801404 AA
63 AA
* * * *
72801406 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
72801459 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:72809246 original size:21 final size:19
Alignment explanation
Indices: 72809204--72809246 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
72809194 TTTGTTTATC
* *
72809204 TTTCTTTTCTTCCTGCCAA
1 TTTCTATTCTTCCTACCAA
72809223 TTTCTATTCTTCTCTACACAA
1 TTTCTATTCTTC-CTAC-CAA
72809244 TTT
1 TTT
72809247 TCTTTGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 3 0.15
21 6 0.30
ACGTcount: A:0.16, C:0.28, G:0.02, T:0.53
Consensus pattern (19 bp):
TTTCTATTCTTCCTACCAA
Found at i:72813779 original size:8 final size:8
Alignment explanation
Indices: 72813769--72813804 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
72813759 GGCAAAAGCT
*
72813769 GAAATGCT
1 GAAATGCC
72813777 GAAATGCC
1 GAAATGCC
72813785 GAAATGCC
1 GAAATGCC
*
72813793 GAAATACC
1 GAAATGCC
72813801 GAAA
1 GAAA
72813805 AGCCAAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.14
Consensus pattern (8 bp):
GAAATGCC
Found at i:72814083 original size:29 final size:29
Alignment explanation
Indices: 72814051--72814132 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 29
72814041 CGAACAGGCT
72814051 ATATAAATGTGATTTGGGCCTAATGAGCC
1 ATATAAATGTGATTTGGGCCTAATGAGCC
* * * *
72814080 ATATACAGGTGATTTGGGCCTAGTGGGCC
1 ATATAAATGTGATTTGGGCCTAATGAGCC
* * *
72814109 ATATGAATATGA-TTGGGCTTAATG
1 ATATAAATGTGATTTGGGCCTAATG
72814133 GGTCAGATGC
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
28 10 0.23
29 33 0.77
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGAGCC
Found at i:72816533 original size:9 final size:9
Alignment explanation
Indices: 72816519--72816543 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
72816509 TGGATTAAAT
72816519 TGAATGAAA
1 TGAATGAAA
72816528 TGAATGAAA
1 TGAATGAAA
72816537 TGAATGA
1 TGAATGA
72816544 TTGAATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (9 bp):
TGAATGAAA
Found at i:72816934 original size:42 final size:42
Alignment explanation
Indices: 72816832--72816973 Score: 126
Period size: 43 Copynumber: 3.3 Consensus size: 42
72816822 ATCTGAGACA
* * * * * *
72816832 TCGTGTAAGACCGTGTGTAGGACACAGGCCTCGAT-TGAGATT
1 TCGTGTAAGACCATGTCTGGGACAAAGGCATCGATAT-TGATT
* **
72816874 TACGTATAAGACCATGTCTGGGACATCGGCATCG-TATCTGATT
1 T-CGTGTAAGACCATGTCTGGGACAAAGGCATCGATAT-TGATT
*
72816917 TCGTGTAAGACCCTGTCTGGGACAAAGGCATCGATATTGAATT
1 TCGTGTAAGACCATGTCTGGGACAAAGGCATCGATATTG-ATT
* *
72816960 ACATGTAAGACCAT
1 TCGTGTAAGACCAT
72816974 ATCCGAGACG
Statistics
Matches: 80, Mismatches: 16, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
42 32 0.40
43 48 0.60
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACAAAGGCATCGATATTGATT
Found at i:72821551 original size:16 final size:18
Alignment explanation
Indices: 72821530--72821562 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
72821520 CATACTAGCT
72821530 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
72821546 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
72821563 GTGATGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:72822125 original size:41 final size:42
Alignment explanation
Indices: 72822051--72822158 Score: 121
Period size: 41 Copynumber: 2.6 Consensus size: 42
72822041 TTTATCAAAC
* **
72822051 CACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAGT-TCA-TT
1 CACCGGCATTTAGCCTGCTAGGCTCGAAACCCGA-TATCATTT
* *
72822092 CACCGGCATTTCGCCTGCTAGGCTCGAAGCCCGATATCATTT
1 CACCGGCATTTAGCCTGCTAGGCTCGAAACCCGATATCATTT
* *
72822134 CACCGGTATGATAGCCTGCTAGGCT
1 CACCGGCAT-TTAGCCTGCTAGGCT
72822159 TAAAGGCCCG
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
40 1 0.02
41 32 0.57
42 10 0.18
43 13 0.23
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (42 bp):
CACCGGCATTTAGCCTGCTAGGCTCGAAACCCGATATCATTT
Found at i:72831137 original size:49 final size:49
Alignment explanation
Indices: 72831024--72831360 Score: 595
Period size: 49 Copynumber: 6.9 Consensus size: 49
72831014 GTATGAGATA
*
72831024 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTG-AAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
72831072 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
72831121 TATATATGTGATAAGGCCTAATGGCCGATCTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
72831170 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
72831219 TATATCTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
72831268 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
72831317 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
72831361 TATATGTGTG
Statistics
Matches: 276, Mismatches: 12, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
48 39 0.14
49 237 0.86
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:72831501 original size:37 final size:37
Alignment explanation
Indices: 72831447--72831537 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
72831437 AATTTGGAAA
*
72831447 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
72831485 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
72831522 TATGTCTGGGTAAGAC
1 TATGTCCGGGTAAGAC
72831538 TTTGTAATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 47 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:72833402 original size:40 final size:40
Alignment explanation
Indices: 72833357--72833668 Score: 543
Period size: 40 Copynumber: 7.8 Consensus size: 40
72833347 GAGAATTGAG
* *
72833357 AGTGATGTATCCGGACAAAGTTCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
72833397 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
72833437 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
72833477 AGTGATGTATCCGAACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
72833517 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
72833557 AGTGTTGTATCCGGACTAAGTTTCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
72833597 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
72833637 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
72833669 ATCATGCTGG
Statistics
Matches: 259, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 259 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:72834510 original size:40 final size:41
Alignment explanation
Indices: 72834412--72834517 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 41
72834402 TTCAAATGGT
* ** * *
72834412 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
*
72834453 ATCCGGGTCAAT-TCCCGAAGGCAATTGTGCGAA-TCACTATA
1 ATCCGGG-CTATGTCCCGAAGGCAATTGTGCGAAGTCACTA-A
*
72834494 A-CCGGGCTATGTCCCGAAGACAAT
1 ATCCGGGCTATGTCCCGAAGGCAAT
72834518 CGAGCGAGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
39 3 0.06
40 22 0.41
41 27 0.50
42 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
Found at i:72837449 original size:49 final size:49
Alignment explanation
Indices: 72837395--72837726 Score: 584
Period size: 49 Copynumber: 6.9 Consensus size: 49
72837385 GTATGAGATA
*
72837395 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
*
72837444 ATATATGTGATAAGGCCTAATGGCC-ATCTGATGAATGTGAAAGTGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
*
72837492 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
72837541 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
* *
72837590 ATATCTGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
72837637 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
72837684 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
72837727 TATATGTGTG
Statistics
Matches: 273, Mismatches: 9, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
47 92 0.34
48 46 0.17
49 135 0.49
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGT
Found at i:72837867 original size:37 final size:37
Alignment explanation
Indices: 72837821--72837903 Score: 157
Period size: 37 Copynumber: 2.2 Consensus size: 37
72837811 AATATGTTCT
*
72837821 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
72837858 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
72837895 GGGTAAGAC
1 GGGTAAGAC
72837904 TTTGTAATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.23
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:72840442 original size:27 final size:27
Alignment explanation
Indices: 72840409--72840695 Score: 376
Period size: 27 Copynumber: 10.6 Consensus size: 27
72840399 TTAGTTTACC
72840409 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
72840436 AATTTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
72840463 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
72840490 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
72840517 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
72840544 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
72840571 AAATTACCCAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
72840598 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
72840625 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
72840652 AAATTACCAAAATACCTCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
72840679 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
72840696 TCGACCTGTA
Statistics
Matches: 222, Mismatches: 38, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 222 1.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:72840706 original size:81 final size:80
Alignment explanation
Indices: 72840409--72840748 Score: 317
Period size: 81 Copynumber: 4.2 Consensus size: 80
72840399 TTAGTTTACC
* * * * * * * *
72840409 AAATTACCAAAATACCCCTGGTTTGTAAATTTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-CGATTTGTAAAATTATCAAA
*
72840474 ATACCCCTGGTTTGTA
65 ATACCCCTAGTTTGTA
* ** *
72840490 AAATTACCAAAATA-CCCTTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCC-GATTTGTAAAATTATC-A
* * *
72840553 AAATACCCTTTGTTTATA
63 AAATACCCCTAGTTTGTA
* * *
72840571 AAATTACCCAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGA-TTTGTAAAATTATCAAA
72840636 ATACCCCTAGTTTGTA
65 ATACCCCTAGTTTGTA
* * ** ** ***
72840652 AAATTACCAAAATACCTCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGGA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-CGATTTGTAAAATTATCAAA
* *
72840717 ATA-CCCTCGAATTGTA
65 ATACCCCTAG-TTTGTA
*
72840733 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
72840749 TTTGATTTAC
Statistics
Matches: 214, Mismatches: 37, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
80 10 0.05
81 197 0.92
82 7 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGATTTGTAAAATTATCAAAA
TACCCCTAGTTTGTA
Found at i:72840748 original size:27 final size:27
Alignment explanation
Indices: 72840409--72840804 Score: 261
Period size: 27 Copynumber: 14.7 Consensus size: 27
72840399 TTAGTTTACC
*
72840409 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * *
72840436 AATTTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
72840463 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* **
72840490 AAATTACCAAAATACCCT-TAGTTTACA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
72840517 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
72840544 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
* *
72840571 AAATTACCCAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
*
72840598 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
72840625 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
72840652 AAATTACCAAAATA-CCTCTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** **
72840679 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
**** *
72840706 AAATTATTGGAATACCCTCGAATTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * **
72840733 AAATTACCAAAGTACCTTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** **
72840760 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
72840787 AAATTACCGAAATACCCT
1 AAATTACCAAAATACCCT
72840805 TGTAGGGTAG
Statistics
Matches: 293, Mismatches: 62, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
26 3 0.01
27 284 0.97
28 6 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:72840821 original size:27 final size:27
Alignment explanation
Indices: 72840795--72841013 Score: 249
Period size: 27 Copynumber: 7.8 Consensus size: 27
72840785 CAAAATTACC
* *
72840795 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACT
**
72840822 GAAATACCTTTGTAGGGTAGAAATACCGAAATACT
1 GAAATACCCCTGTAGGGTAG--------AAATACT
* *
72840857 AAAATACCCCTATAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAAATACT
*
72840884 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACT
* *
72840911 AAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACT
*
72840938 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAAATACT
*
72840965 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACT
* *
72840992 GAAATACTCCTGTAAGGTAGAA
1 GAAATACCCCTGTAGGGTAGAA
72841014 TTACCTAGGG
Statistics
Matches: 167, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
27 145 0.87
35 22 0.13
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAAATACT
Found at i:72840862 original size:35 final size:35
Alignment explanation
Indices: 72840814--72840891 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 35
72840804 TTGTAGGGTA
* ** *
72840814 GAAATACCGAAATACCTTTGTAGGGTAGAAATACC
1 GAAATACCAAAATACCCCTATAGGGTAGAAATACC
* *
72840849 GAAATACTAAAATACCCCTATAGGGTAGAAATACT
1 GAAATACCAAAATACCCCTATAGGGTAGAAATACC
72840884 GAAATACC
1 GAAATACC
72840892 CCTGTAGGGT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.44, C:0.18, G:0.17, T:0.22
Consensus pattern (35 bp):
GAAATACCAAAATACCCCTATAGGGTAGAAATACC
Found at i:72841014 original size:27 final size:27
Alignment explanation
Indices: 72840853--72841017 Score: 258
Period size: 27 Copynumber: 6.1 Consensus size: 27
72840843 AATACCGAAA
* * *
72840853 TACTAAAATACCCCTATAGGGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAT
72840880 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
*
72840907 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
72840934 TACTGAAATACCCTTGTAGGGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAT
72840961 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
72840988 TACTGAAATACTCCTGTAAGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
72841015 TAC
1 TAC
72841018 CTAGGGTGTT
Statistics
Matches: 127, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
TACTGAAATACCCCTGTAGGGTAGAAT
Found at i:72841552 original size:6 final size:6
Alignment explanation
Indices: 72841521--72841623 Score: 84
Period size: 6 Copynumber: 16.8 Consensus size: 6
72841511 TTGCATTCAC
* * *
72841521 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
72841570 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTA ATTCTG ATTTTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
72841619 ATTCT
1 ATTCT
72841624 AGTTTTGATA
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
5 3 0.04
6 66 0.86
7 6 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:72841594 original size:49 final size:49
Alignment explanation
Indices: 72841521--72841623 Score: 143
Period size: 49 Copynumber: 2.1 Consensus size: 49
72841511 TTGCATTCAC
* * *
72841521 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTAATTCTGATTCTAATTCTG
* * * *
72841570 ATTCTGATTCTGATTCTGTCACCTGATTCTAATTCTGATTTTCATTTTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTAATTCTGATTCTAATTCTG
72841619 ATTCT
1 ATTCT
72841624 AGTTTTGATA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (49 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTAATTCTGATTCTAATTCTG
Found at i:72842672 original size:16 final size:18
Alignment explanation
Indices: 72842651--72842683 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
72842641 CATACTAGCT
72842651 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
72842667 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
72842684 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:72843319 original size:45 final size:45
Alignment explanation
Indices: 72843209--72843339 Score: 164
Period size: 45 Copynumber: 3.0 Consensus size: 45
72843199 AAACCCGAGT
* *
72843209 TCAT-TCACCAGCATT-TCGCCTGCTAGGCTCGAAGG-CCG-ATA
1 TCATCTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
* *
72843250 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCATCTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
* *
72843295 GT-ATCTCACCAGCATTATAGCCTGCTACGCTCAAAGGCCCAAATA
1 -TCATCTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
72843340 ATACTGTACG
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
41 4 0.05
42 10 0.13
43 18 0.23
44 3 0.04
45 42 0.54
46 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.24
Consensus pattern (45 bp):
TCATCTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
Found at i:72849545 original size:17 final size:17
Alignment explanation
Indices: 72849523--72849580 Score: 80
Period size: 17 Copynumber: 3.4 Consensus size: 17
72849513 GGTTGAAGTT
* *
72849523 GGGCCCAATAGGCTTTA
1 GGGCCCAATGGGCTTTC
*
72849540 GGGCCCAATGGGCTGTC
1 GGGCCCAATGGGCTTTC
*
72849557 GAGCCCAATGGGCTTTC
1 GGGCCCAATGGGCTTTC
72849574 GGGCCCA
1 GGGCCCA
72849581 TTTGGGTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.19
Consensus pattern (17 bp):
GGGCCCAATGGGCTTTC
Found at i:72849990 original size:20 final size:20
Alignment explanation
Indices: 72849914--72849989 Score: 125
Period size: 20 Copynumber: 3.8 Consensus size: 20
72849904 ACATGGTTGA
72849914 TATGATATGCACATGACATG
1 TATGATATGCACATGACATG
72849934 TATGATATGCACATGACATG
1 TATGATATGCACATGACATG
*
72849954 TATGATATGCACATGATATG
1 TATGATATGCACATGACATG
* *
72849974 TATGAAATGCTCATGA
1 TATGATATGCACATGA
72849990 TGTATTCATA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.32
Consensus pattern (20 bp):
TATGATATGCACATGACATG
Found at i:72850113 original size:25 final size:26
Alignment explanation
Indices: 72850042--72850150 Score: 156
Period size: 26 Copynumber: 4.3 Consensus size: 26
72850032 GAGGAAGTGC
72850042 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
72850068 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
72850094 AAAAGGGCTT-TGCCCCAGTTTA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
72850118 AAAAGGGCTT-TGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
72850141 AAAAGAGGCT
1 AAAAG-GGCT
72850151 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
23 8 0.10
24 23 0.29
25 12 0.15
26 36 0.46
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:72857943 original size:25 final size:25
Alignment explanation
Indices: 72857915--72857962 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
72857905 TTATAATATG
* * *
72857915 AAAATGACTATTTTTCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
72857940 AAAATTACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72857963 GTTTACTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.31
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72858001 original size:16 final size:17
Alignment explanation
Indices: 72857980--72858015 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
72857970 TATAAATTTG
72857980 ATACGTGG-GATATGAT
1 ATACGTGGTGATATGAT
72857996 ATACGTGGTTGATATGAT
1 ATACGTGG-TGATATGAT
72858014 AT
1 AT
72858016 GCACATGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.36
Consensus pattern (17 bp):
ATACGTGGTGATATGAT
Found at i:72858104 original size:20 final size:20
Alignment explanation
Indices: 72858008--72858103 Score: 156
Period size: 20 Copynumber: 4.8 Consensus size: 20
72857998 ACGTGGTTGA
72858008 TATGATATGCACATGACATG
1 TATGATATGCACATGACATG
72858028 TATGATATGCACATGACATG
1 TATGATATGCACATGACATG
72858048 TATGATATGCACATGACATG
1 TATGATATGCACATGACATG
* * *
72858068 TATTAAATGCACATGATATG
1 TATGATATGCACATGACATG
*
72858088 TATGAAATGCACATGA
1 TATGATATGCACATGA
72858104 TGTATTCATA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 72 1.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (20 bp):
TATGATATGCACATGACATG
Done.