Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 234 of 433
Found at i:72858184 original size:26 final size:26
Alignment explanation
Indices: 72858155--72858230 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
72858145 GGAGGAAGTG
72858155 GAAAAGGGCTTATGCCCCAGTTTATT
1 GAAAAGGGCTTATGCCCCAGTTTATT
72858181 GAAAAGGGCTTATGCCCCAGTTTATT
1 GAAAAGGGCTTATGCCCCAGTTTATT
* *
72858207 AAAAAGGGCTT-TGCCCCAATTTAT
1 GAAAAGGGCTTATGCCCCAGTTTAT
72858231 CAAAACTGCT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 12 0.25
26 36 0.75
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (26 bp):
GAAAAGGGCTTATGCCCCAGTTTATT
Found at i:72864848 original size:27 final size:27
Alignment explanation
Indices: 72864809--72864921 Score: 124
Period size: 27 Copynumber: 4.2 Consensus size: 27
72864799 CAGCATGGCT
* * *
72864809 ACCAGA-ATAGATAATGTGATAGAGTC
1 ACCAGATACAGATAATGTGGTAGAGCC
*
72864835 ATCAGATACAGATAATCGTGGTAGAGCC
1 ACCAGATACAGATAAT-GTGGTAGAGCC
72864863 ACCAGA-ACAGATATATGTGGTAGAGCC
1 ACCAGATACAGATA-ATGTGGTAGAGCC
* *
72864890 ACCAGAT-CAGATAATTGTGGCATAGCC
1 ACCAGATACAGATAA-TGTGGTAGAGCC
72864917 ACCAG
1 ACCAG
72864922 GATGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.08
27 53 0.71
28 16 0.21
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (27 bp):
ACCAGATACAGATAATGTGGTAGAGCC
Found at i:72864901 original size:54 final size:54
Alignment explanation
Indices: 72864809--72864921 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
72864799 CAGCATGGCT
* * * *
72864809 ACCAGAATAGATAATGTGATAGAGTCATCAGATACAGATAATCGTGGTAGAGCC
1 ACCAGAACAGATAATGTGATAGAGCCACCAGATACAGATAATCGTGGCAGAGCC
* * *
72864863 ACCAGAACAGATATATGTGGTAGAGCCACCAGAT-CAGATAATTGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGATAGAGCCACCAGATACAGATAATCGTGGCAGAGCC
72864917 ACCAG
1 ACCAG
72864922 GATGCTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
ACCAGAACAGATAATGTGATAGAGCCACCAGATACAGATAATCGTGGCAGAGCC
Found at i:72866100 original size:16 final size:16
Alignment explanation
Indices: 72866075--72866123 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
72866065 GCTAAAAGAA
*
72866075 AAGAAAAGATGAGCAG
1 AAGAAGAGATGAGCAG
72866091 AAGAAGAGATGAGCAG
1 AAGAAGAGATGAGCAG
72866107 AAGAAGAGATGAGCAG
1 AAGAAGAGATGAGCAG
72866123 A
1 A
72866124 GAATTCAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.53, C:0.06, G:0.35, T:0.06
Consensus pattern (16 bp):
AAGAAGAGATGAGCAG
Found at i:72867694 original size:49 final size:48
Alignment explanation
Indices: 72867622--72867785 Score: 166
Period size: 49 Copynumber: 3.3 Consensus size: 48
72867612 TGAGGTCACG
* *
72867622 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGCTAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAG-TAATTGGTCGCA
* * * * * ***
72867671 TGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGAAAGCTGTGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGTAA--T-TGGTCGCA
**
72867722 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTCTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAG-TAATTGGTCGCA
*
72867771 TGTGTAGTAGTAAGT
1 TGTGTAGTACTAAGT
72867786 AAGGGCTACT
Statistics
Matches: 91, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
48 2 0.02
49 50 0.55
50 2 0.02
51 37 0.41
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGTAATTGGTCGCA
Found at i:72867773 original size:51 final size:51
Alignment explanation
Indices: 72867621--72867782 Score: 179
Period size: 51 Copynumber: 3.2 Consensus size: 51
72867611 GTGAGGTCAC
* * * *
72867621 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGCTAATTGGTCGCA-
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATACTTGGTCGCAT
* * * * *
72867671 -TGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGAAAGCTGTGAT--CAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATA-CT-TGGTCGCAT
*
72867721 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTCTTGGTCGCAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATACTTGGTCGCAT
72867772 GTGTAGTAGTA
1 GTGT-GTAGTA
72867783 AGTAAGGGCT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
49 38 0.42
50 3 0.03
51 44 0.48
52 6 0.07
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (51 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATACTTGGTCGCAT
Found at i:72867794 original size:100 final size:100
Alignment explanation
Indices: 72867621--72867804 Score: 280
Period size: 100 Copynumber: 1.8 Consensus size: 100
72867611 GTGAGGTCAC
* * *
72867621 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGCTAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
*
72867686 GCAGGCTACTATACGTACCCGAAAGCTGTGATCAT
66 GAAGGCTACTATACGTACCCGAAAGCTGTGATCAT
** *
72867721 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTCTTGGTCGCATGTGTAGTAGTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
*
72867786 -AAGGGCTACTATGCGTACC
66 GAA-GGCTACTATACGTACC
72867805 AGATAGCTTC
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
99 1 0.01
100 74 0.99
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
GAAGGCTACTATACGTACCCGAAAGCTGTGATCAT
Found at i:72876043 original size:23 final size:23
Alignment explanation
Indices: 72876004--72876159 Score: 63
Period size: 23 Copynumber: 6.8 Consensus size: 23
72875994 CATTTAAGTA
*
72876004 CTGCAATTTGA-AGTGTTTAGTTG
1 CTGCAAATTGAGA-TGTTTAGTTG
* *
72876027 CTGGAAATTGAGATGTTTTA-TTT
1 CTGCAAATTGAGATG-TTTAGTTG
* * * ***
72876050 CTGTAAATTGAGGTGTATAAACG
1 CTGCAAATTGAGATGTTTAGTTG
* ** *
72876073 TTGTTAATTGAGATGTTAAAG-TG
1 CTGCAAATTGAGATGTT-TAGTTG
* *
72876096 CTGCAAATT-AAAGTGTTTAAG-TA
1 CTGCAAATTGAGA-TGTTT-AGTTG
*
72876119 CCGCAAATTGA-AGTGTTTAGTTG
1 CTGCAAATTGAGA-TGTTTAGTTG
*
72876142 CTGGAAATTGAGATGTTT
1 CTGCAAATTGAGATGTTT
72876160 TATCACTGTA
Statistics
Matches: 98, Mismatches: 26, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
22 7 0.07
23 83 0.85
24 8 0.08
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.39
Consensus pattern (23 bp):
CTGCAAATTGAGATGTTTAGTTG
Found at i:72876159 original size:46 final size:46
Alignment explanation
Indices: 72876109--72876333 Score: 224
Period size: 46 Copynumber: 4.9 Consensus size: 46
72876099 CAAATTAAAG
* * ** * *
72876109 TGTTTAAGTACCGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGA
1 TGTTAAAGTACTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAGA
** * * * *
72876155 TGTTTTA-TCACTGTAAA-TGAGGTGTATAAATGTTGTTAATTGAGA
1 TGTTAAAGT-ACTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAGA
*
72876200 TGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGA-A
1 TGTTAAAGTACTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAGA
** * *
72876245 GTGTTAAAGTGTTGCAAATTGAAGTGTTTAAATGTTGTGAGTTGA-A
1 -TGTTAAAGTACTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAGA
* *
72876291 CTGCTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATT
1 -TGTTAAAGTACTGCAAATTGAAGTGTTTAAATGTTGTAAATT
72876334 AAAGTGTTTT
Statistics
Matches: 150, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
45 34 0.23
46 116 0.77
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (46 bp):
TGTTAAAGTACTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAGA
Found at i:72876218 original size:23 final size:24
Alignment explanation
Indices: 72876078--72876318 Score: 120
Period size: 23 Copynumber: 10.5 Consensus size: 24
72876068 AAACGTTGTT
72876078 AATTGAGA-TGTTAAAGTGCTGCA
1 AATTGAGAGTGTTAAAGTGCTGCA
* * * *
72876101 AATT-AAAGTGTTTAAGTACCGCA
1 AATTGAGAGTGTTAAAGTGCTGCA
* *
72876124 AATTGA-AGTGTT-TAGTTGCTGGA
1 AATTGAGAGTGTTAAAG-TGCTGCA
** * *
72876147 AATTGAGA-TGTTTTA-TCACTGTA
1 AATTGAGAGTGTTAAAGT-GCTGCA
* **
72876170 AA-TGAG-GTGTATAAA-TGTTGTT
1 AATTGAGAGTGT-TAAAGTGCTGCA
72876192 AATTGAGA-TGTTAAAGTGCTGCA
1 AATTGAGAGTGTTAAAGTGCTGCA
* *
72876215 AATTGA-AGTGTTTAAA-TGTTGTA
1 AATTGAGAGTG-TTAAAGTGCTGCA
*
72876238 AATTGA-AGTGTTAAAGTGTTGCA
1 AATTGAGAGTGTTAAAGTGCTGCA
* **
72876261 AATTGA-AGTGTTTAAA-TGTTGTG
1 AATTGAGAGTG-TTAAAGTGCTGCA
* * *
72876284 AGTTGA-ACTGCTAAAGTGCTGCA
1 AATTGAGAGTGTTAAAGTGCTGCA
72876307 AATTGA-AGTGTT
1 AATTGAGAGTGTT
72876319 TAAATGTTGT
Statistics
Matches: 170, Mismatches: 32, Indels: 32
0.73 0.14 0.14
Matches are distributed among these distances:
22 31 0.18
23 125 0.74
24 14 0.08
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (24 bp):
AATTGAGAGTGTTAAAGTGCTGCA
Found at i:72876241 original size:114 final size:115
Alignment explanation
Indices: 72875996--72876249 Score: 393
Period size: 114 Copynumber: 2.2 Consensus size: 115
72875986 TAAAGCCCCA
* * * **
72875996 TTTAAGTACTGCAATTTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATTTCTGTAAATTGA
1 TTTAAATACCGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAAATTGA
72876061 GGTGTATAAACGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTAAAGTG
66 GGTGTATAAACGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTAAAGTG
*
72876111 TTTAAGTACCGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAAA-TGA
1 TTTAAATACCGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAAATTGA
* *
72876175 GGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTG
66 GGTGTATAAACGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTAAAGTG
*** *
72876225 TTTAAATGTTGTAAATTGAAGTGTT
1 TTTAAATACCGCAAATTGAAGTGTT
72876250 AAAGTGTTGC
Statistics
Matches: 128, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
114 71 0.55
115 57 0.45
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (115 bp):
TTTAAATACCGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAAATTGA
GGTGTATAAACGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTAAAGTG
Found at i:72876332 original size:23 final size:23
Alignment explanation
Indices: 72876166--72876342 Score: 166
Period size: 23 Copynumber: 7.7 Consensus size: 23
72876156 GTTTTATCAC
* *
72876166 TGTAAA-TGAGGTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAATGT
* *
72876188 TGTTAATTG-AGATG-TTAAAGTGC
1 TGTAAATTGAAG-TGTTTAAA-TGT
*
72876211 TGCAAATTGAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAATGT
72876234 TGTAAATTGAAGTG-TTAAAGTGT
1 TGTAAATTGAAGTGTTTAAA-TGT
*
72876257 TGCAAATTGAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAATGT
* * * * *
72876280 TGTGAGTTGAACTG-CTAAAGTGC
1 TGTAAATTGAAGTGTTTAAA-TGT
*
72876303 TGCAAATTGAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAATGT
*
72876326 TGTAAATTAAAGTGTTT
1 TGTAAATTGAAGTGTTT
72876343 TAAGAATTGG
Statistics
Matches: 123, Mismatches: 23, Indels: 17
0.75 0.14 0.10
Matches are distributed among these distances:
22 19 0.15
23 88 0.72
24 16 0.13
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.38
Consensus pattern (23 bp):
TGTAAATTGAAGTGTTTAAATGT
Found at i:72876932 original size:54 final size:55
Alignment explanation
Indices: 72876849--72876962 Score: 185
Period size: 54 Copynumber: 2.1 Consensus size: 55
72876839 GTCGAATCTG
* *
72876849 ACTTAGGCCACATGGCTAGCCACACGCCCATGTACCTTAGCCGTGCTCAAGCCT-
1 ACTTAGGCCACACGACTAGCCACACGCCCATGTACCTTAGCCGTGCTCAAGCCTA
* *
72876903 ACTTAGGCCACACGACTAGCCACATGCCCATGTACCTTGGCCGTGCTCAAGCCTA
1 ACTTAGGCCACACGACTAGCCACACGCCCATGTACCTTAGCCGTGCTCAAGCCTA
72876958 ACTTA
1 ACTTA
72876963 AAATTGTAGG
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
54 50 0.91
55 5 0.09
ACGTcount: A:0.24, C:0.36, G:0.19, T:0.21
Consensus pattern (55 bp):
ACTTAGGCCACACGACTAGCCACACGCCCATGTACCTTAGCCGTGCTCAAGCCTA
Found at i:72880925 original size:18 final size:18
Alignment explanation
Indices: 72880902--72880941 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
72880892 GGCAATTTTT
72880902 GGGCATAGTGGG-CTACAC
1 GGGCAT-GTGGGTCTACAC
*
72880920 GGGCATGTGGGTCTACAT
1 GGGCATGTGGGTCTACAC
72880938 GGGC
1 GGGC
72880942 CCACATTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.17, C:0.20, G:0.42, T:0.20
Consensus pattern (18 bp):
GGGCATGTGGGTCTACAC
Found at i:72891030 original size:40 final size:40
Alignment explanation
Indices: 72890980--72891157 Score: 182
Period size: 40 Copynumber: 4.4 Consensus size: 40
72890970 TAGTGATTCG
* * *
72890980 CACAATTGCCTTTGGGAATTAGCCCGGA-TTTAGTAACTCA
1 CACAAATGCCTTCGGGAATTAACCC-GATTTTAGTAACTCA
* * * *
72891020 CACGAATGCCTTCGGGACTTAACCCGATTTTGGTAACTCG
1 CACAAATGCCTTCGGGAATTAACCCGATTTTAGTAACTCA
* *
72891060 CACAAATGCCTTCGGGACTTAACCCGATTTTGGTAACT-A
1 CACAAATGCCTTCGGGAATTAACCCGATTTTAGTAACTCA
* * *
72891099 GCACAAATGCCTTCGGGAATTGACCCGGA-TTTAGTCACTTA
1 -CACAAATGCCTTCGGGAATTAACCC-GATTTTAGTAACTCA
*
72891140 GCACAAAAGCCTTCGGGA
1 -CACAAATGCCTTCGGGA
72891158 CTTAGCCGGG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.82
41 20 0.17
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (40 bp):
CACAAATGCCTTCGGGAATTAACCCGATTTTAGTAACTCA
Found at i:72894483 original size:39 final size:39
Alignment explanation
Indices: 72894413--72894562 Score: 232
Period size: 38 Copynumber: 3.9 Consensus size: 39
72894403 AATGTTCGAG
72894413 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
72894451 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
72894489 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
72894528 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
72894563 GGTTACCATA
Statistics
Matches: 103, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
38 53 0.51
39 33 0.32
40 17 0.17
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:72894522 original size:77 final size:77
Alignment explanation
Indices: 72894413--72894561 Score: 237
Period size: 77 Copynumber: 1.9 Consensus size: 77
72894403 AATGTTCGAG
*
72894413 TGATATCCGGGCTAAGCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGCA
1 TGATACCCGGGCTAAGCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGCA
72894477 ATTGTGCAGCTA
66 ATTGTGCAGCTA
* * *
72894489 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATACCCGGGCTAAG-CCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
*
72894554 ATTTGTGC
65 AATTGTGC
72894562 GGGTTACCAT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
76 15 0.23
77 35 0.53
78 16 0.24
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (77 bp):
TGATACCCGGGCTAAGCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCAGCTA
Found at i:72902399 original size:40 final size:39
Alignment explanation
Indices: 72902250--72902401 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
72902240 AATGTTCGAG
*
72902250 TGATATCCGGGCTAAGCCTGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
72902289 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
72902328 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
72902367 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
72902402 GGTTACCATA
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:72902417 original size:40 final size:39
Alignment explanation
Indices: 72902250--72902431 Score: 220
Period size: 39 Copynumber: 4.6 Consensus size: 39
72902240 AATGTTCGAG
* * *
72902250 TGATATCCGGGCTAAGCCTGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
72902289 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
72902328 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
72902367 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
72902407 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
72902432 TGTTTTGAAT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:72910157 original size:6 final size:6
Alignment explanation
Indices: 72910130--72910219 Score: 69
Period size: 6 Copynumber: 15.3 Consensus size: 6
72910120 AATCCTCCTA
* * *
72910130 TTTTCT TTTTCT TTTTA- -TTTAT TCTTAT TTTTAT TTTTAT TTTT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
** * * * *
72910175 ATTTTAT TCATAT TTTTCT TTTGAT TTTGAT TTTTAT TTTCAT TT
1 -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
72910220 CAATTTTCTT
Statistics
Matches: 68, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
4 4 0.06
5 1 0.01
6 62 0.91
7 1 0.01
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:72910183 original size:30 final size:29
Alignment explanation
Indices: 72910141--72910202 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
72910131 TTTCTTTTTC
* *
72910141 TTTTTATTTATTCTTATTTTTATTTTTAT
1 TTTTTATTTATTCATATTTTTATTTTGAT
*
72910170 TTTTTATTTTATTCATATTTTTCTTTTGAT
1 TTTTTA-TTTATTCATATTTTTATTTTGAT
72910200 TTT
1 TTT
72910203 GATTTTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 6 0.21
30 23 0.79
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (29 bp):
TTTTTATTTATTCATATTTTTATTTTGAT
Found at i:72910210 original size:30 final size:30
Alignment explanation
Indices: 72910147--72910212 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
72910137 TTTCTTTTTA
* * *
72910147 TTTATTCTTATTTTTATTTTTATTTTTTAT
1 TTTATTCATATTTTTATTTTGATTTTATAT
*
72910177 TTTATTCATATTTTTCTTTTGATTTTGAT-T
1 TTTATTCATATTTTTATTTTGATTTT-ATAT
72910207 TTTATT
1 TTTATT
72910213 TTCATTTCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.76
Consensus pattern (30 bp):
TTTATTCATATTTTTATTTTGATTTTATAT
Found at i:72910225 original size:18 final size:17
Alignment explanation
Indices: 72910170--72910226 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
72910160 TTATTTTTAT
72910170 TTTTTATTTTA-TTCATA
1 TTTTTATTTTATTTCA-A
* **
72910187 TTTTTCTTTTGATTTTGA
1 TTTTTATTTT-ATTTCAA
72910205 TTTTTATTTTCATTTCAA
1 TTTTTATTTT-ATTTCAA
72910223 TTTT
1 TTTT
72910227 CTTATTTTGA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
17 9 0.29
18 20 0.65
19 2 0.06
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.72
Consensus pattern (17 bp):
TTTTTATTTTATTTCAA
Found at i:72918811 original size:22 final size:21
Alignment explanation
Indices: 72918776--72918824 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
72918766 TTACAAATCA
*
72918776 ATACACAT-CATTTAACATAC
1 ATACTCATACATTTAACATAC
* *
72918796 ATAACTCATACATTTAGCATTC
1 AT-ACTCATACATTTAACATAC
72918818 ATACTCA
1 ATACTCA
72918825 AATACCATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 10 0.42
22 12 0.50
ACGTcount: A:0.41, C:0.24, G:0.02, T:0.33
Consensus pattern (21 bp):
ATACTCATACATTTAACATAC
Found at i:72920840 original size:68 final size:66
Alignment explanation
Indices: 72920768--72920917 Score: 169
Period size: 64 Copynumber: 2.2 Consensus size: 66
72920758 CATCATGTGT
* * * *
72920768 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-T-ACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGCTCGCATGCGTGATACCAGGTGATGACACCA
72920831 TGTAG
62 TGTAG
** * *
72920836 ACAAGAGAGCTACGGGATATATGTAGCTAGCTCGCATGCGTGGTTCCAGGTGAATGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGCTCGCATGCGTGATACCAGGTG-ATGACACCATGT
72920901 AG
65 AG
72920903 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
72920918 GATAAACTAG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 26 0.37
65 3 0.04
66 3 0.04
67 25 0.36
68 13 0.19
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGCTCGCATGCGTGATACCAGGTGATGACACCATGTA
G
Found at i:72925090 original size:27 final size:27
Alignment explanation
Indices: 72925060--72925155 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
72925050 GTAGGCTAGT
72925060 ATTACTGAAATACCCCTGTAAGGTAGA
1 ATTACTGAAATACCCCTGTAAGGTAGA
* *
72925087 ATTATTGAAATACCCCTGTAGGGTAGA
1 ATTACTGAAATACCCCTGTAAGGTAGA
* *
72925114 ATTACTGAAATGCTCCTGT-AGGATAGA
1 ATTACTGAAATACCCCTGTAAGG-TAGA
72925141 ATTACTGAAATACCC
1 ATTACTGAAATACCC
72925156 TTAATTTAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.03
27 58 0.97
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (27 bp):
ATTACTGAAATACCCCTGTAAGGTAGA
Found at i:72925170 original size:27 final size:27
Alignment explanation
Indices: 72925140--72925399 Score: 147
Period size: 27 Copynumber: 9.7 Consensus size: 27
72925130 TGTAGGATAG
* *
72925140 AATTACTGAAATACCCTTAATTTAAAA
1 AATTACCGAAATACCCTTAATTTACAA
* **
72925167 AATTACTG-AATACCCTTGGTTTACAA
1 AATTACCGAAATACCCTTAATTTACAA
* * * *
72925193 AGTTACCAAAATACCATTGA-TTAGCAA
1 AATTACCGAAATACCCTTAATTTA-CAA
* * * **
72925220 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCGAAATACCCTTAATTTACAA
* * *
72925247 AATTACCAAAATACTCCTAAATTGT--TA
1 AATTACCGAAATAC-CCTTAATT-TACAA
* **
72925274 AATTACCGAAATACCCTTGATTTGGAA
1 AATTACCGAAATACCCTTAATTTACAA
*
72925301 AATATA--GAAATACCCCTAATTTACAA
1 AAT-TACCGAAATACCCTTAATTTACAA
** * *
72925327 AATTACAAAAATACCATTGACTTT-CAAA
1 AATTACCGAAATACCCTT-AATTTAC-AA
* * * **
72925355 AATTACAGAAATAACATTGGTTTACAA
1 AATTACCGAAATACCCTTAATTTACAA
72925382 AATTACCGAAATACCCTT
1 AATTACCGAAATACCCTT
72925400 GGTTTGTAGA
Statistics
Matches: 182, Mismatches: 38, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
25 3 0.02
26 48 0.26
27 98 0.54
28 32 0.18
29 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCGAAATACCCTTAATTTACAA
Found at i:72925366 original size:28 final size:27
Alignment explanation
Indices: 72925320--72925396 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 27
72925310 ATACCCCTAA
*
72925320 TTTACAAAATTACAAAAATACCATTGAC
1 TTTACAAAATTACAGAAATACCATTG-C
* *
72925348 TTT-CAAAAATTACAGAAATAACATTGG
1 TTTAC-AAAATTACAGAAATACCATTGC
*
72925375 TTTACAAAATTACCGAAATACC
1 TTTACAAAATTACAGAAATACC
72925397 CTTGGTTTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
27 19 0.45
28 23 0.55
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.29
Consensus pattern (27 bp):
TTTACAAAATTACAGAAATACCATTGC
Found at i:72925721 original size:41 final size:41
Alignment explanation
Indices: 72925670--72925870 Score: 278
Period size: 41 Copynumber: 4.9 Consensus size: 41
72925660 GAAGAAATTG
* *
72925670 AGGACCGCATGGTTGCTTGATGA-CTGTGGATCCACCGATTA
1 AGGATCGCATGGTTGCTTGACGATC-GTGGATCCACCGATTA
* *
72925711 AGGATTGCATGGTTGCTTGACGATCGTGGATCTACCGATTA
1 AGGATCGCATGGTTGCTTGACGATCGTGGATCCACCGATTA
* * *
72925752 AGGATCGCATGGTTGCTTGACGACCGTAGATCCACCGATTG
1 AGGATCGCATGGTTGCTTGACGATCGTGGATCCACCGATTA
* * * **
72925793 AGGATCGCATGGTTTCTTTATGATCGTGGATCCGTCGATTA
1 AGGATCGCATGGTTGCTTGACGATCGTGGATCCACCGATTA
72925834 AGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
1 AGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
72925871 GTGGCTTTTA
Statistics
Matches: 137, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
41 136 0.99
42 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (41 bp):
AGGATCGCATGGTTGCTTGACGATCGTGGATCCACCGATTA
Found at i:72930345 original size:15 final size:15
Alignment explanation
Indices: 72930321--72930379 Score: 93
Period size: 15 Copynumber: 4.0 Consensus size: 15
72930311 TTCGTACTTA
*
72930321 GAGTAGGTGACAAGG
1 GAGTAGGTGACGAGG
*
72930336 GAGTAAGTGACGA-G
1 GAGTAGGTGACGAGG
72930350 GAGTAGGTGACGAGG
1 GAGTAGGTGACGAGG
72930365 GAGTAGGTGACGAGG
1 GAGTAGGTGACGAGG
72930380 AAATGATCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
14 13 0.32
15 27 0.68
ACGTcount: A:0.31, C:0.07, G:0.49, T:0.14
Consensus pattern (15 bp):
GAGTAGGTGACGAGG
Found at i:72930355 original size:29 final size:29
Alignment explanation
Indices: 72930321--72930380 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
72930311 TTCGTACTTA
72930321 GAGTAGGTGACAAGGGAGTAAGTGACGAG
1 GAGTAGGTGACAAGGGAGTAAGTGACGAG
* *
72930350 GAGTAGGTGACGAGGGAGTAGGTGACGAG
1 GAGTAGGTGACAAGGGAGTAAGTGACGAG
72930379 GA
1 GA
72930381 AATGATCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.48, T:0.13
Consensus pattern (29 bp):
GAGTAGGTGACAAGGGAGTAAGTGACGAG
Found at i:72935436 original size:13 final size:13
Alignment explanation
Indices: 72935420--72935447 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
72935410 TGTGACCACA
72935420 CCCCCTAACCAAG
1 CCCCCTAACCAAG
72935433 CCCCCTAACCAAG
1 CCCCCTAACCAAG
72935446 CC
1 CC
72935448 TCATTACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.57, G:0.07, T:0.07
Consensus pattern (13 bp):
CCCCCTAACCAAG
Found at i:72937660 original size:40 final size:40
Alignment explanation
Indices: 72937585--72937799 Score: 330
Period size: 40 Copynumber: 5.4 Consensus size: 40
72937575 ACCAAGTACA
* *
72937585 TTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATGCC
1 TTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCC
*
72937624 TTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
*
72937664 TTCGGG-CCTAGCCCGGATATAGTAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
72937703 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
1 TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
* *
72937743 TTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCC
1 TTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCC
72937783 TTCGGGACTTAGCCCGG
1 TTCGGGACTTAGCCCGG
72937800 TTATCATCCG
Statistics
Matches: 164, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 50 0.30
40 114 0.70
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
TTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
Found at i:72937716 original size:79 final size:79
Alignment explanation
Indices: 72937597--72937803 Score: 328
Period size: 79 Copynumber: 2.6 Consensus size: 79
72937587 CGGGATTTAG
*
72937597 CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
72937662 CCTTCGGG-CCTAGC
65 CCTTCGGGACCTAGC
*
72937676 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
72937741 CCTTCGGGACTTAGC
65 CCTTCGGGACCTAGC
*
72937756 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
72937804 CATCCGGATA
Statistics
Matches: 119, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
78 1 0.01
79 70 0.59
80 48 0.40
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (79 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
CTTCGGGACCTAGC
Found at i:72944611 original size:40 final size:40
Alignment explanation
Indices: 72944477--72944628 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 40
72944467 GTAACCACAT
* * * **
72944477 GCACGAATGCCCTCGGGTCTTAGCCCGGATAGAA-CGACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACCA
* * * *
72944517 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * **
72944557 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
72944597 GCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
72944629 CATTCAATTG
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 92 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:72945883 original size:20 final size:20
Alignment explanation
Indices: 72945858--72945895 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72945848 GGATGAACAC
72945858 TTTTCTTCCTTTCTTTTTTT
1 TTTTCTTCCTTTCTTTTTTT
* *
72945878 TTTTCTTTCTTTGTTTTT
1 TTTTCTTCCTTTCTTTTT
72945896 GTTTCTCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTCTTCCTTTCTTTTTTT
Found at i:72945885 original size:16 final size:18
Alignment explanation
Indices: 72945866--72945901 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
72945856 ACTTTTCTTC
72945866 CTTTCTTT-TTTTT-TTT
1 CTTTCTTTGTTTTTGTTT
72945882 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
72945900 CT
1 CT
72945902 CTCATGTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 5 0.28
18 5 0.28
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.81
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:72949129 original size:40 final size:40
Alignment explanation
Indices: 72949052--72949309 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
72949042 AAACCAAGTA
* *
72949052 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
72949091 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72949131 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72949171 CCTTCGGGACTTAGCTCAGATATAGTAACTCCCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72949211 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72949251 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72949291 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72949310 TTATCATCCG
Statistics
Matches: 198, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 15 0.08
40 183 0.92
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72951580 original size:14 final size:14
Alignment explanation
Indices: 72951561--72951587 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
72951551 ATATTTAACT
72951561 TGTTCTTAATTATG
1 TGTTCTTAATTATG
72951575 TGTTCTTAATTAT
1 TGTTCTTAATTAT
72951588 TGCTTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:72958411 original size:39 final size:39
Alignment explanation
Indices: 72958357--72958518 Score: 234
Period size: 39 Copynumber: 4.1 Consensus size: 39
72958347 TGTGTATGAA
* *
72958357 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGAAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
72958396 TGTGCGAGTTGTGATATCCAGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
72958435 GGTACGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
72958474 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
72958514 TGTGC
1 TGTGC
72958519 CGGTTACCAT
Statistics
Matches: 108, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 92 0.85
40 16 0.15
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:72960509 original size:20 final size:21
Alignment explanation
Indices: 72960453--72960512 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
72960443 CGGAGTGTAG
72960453 TCAGGGGCACGAATGTGC-TA
1 TCAGGGGCACGAATGTGCATA
*
72960473 TC-GGGGCATC-AAAGTGCAT-
1 TCAGGGGCA-CGAATGTGCATA
72960492 TCAGGGGCACGAATGTGCATA
1 TCAGGGGCACGAATGTGCATA
72960513 CAAGGACACC
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
19 15 0.45
20 18 0.55
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (21 bp):
TCAGGGGCACGAATGTGCATA
Found at i:72960538 original size:40 final size:40
Alignment explanation
Indices: 72960493--72960581 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
72960483 AAAGTGCATT
* *
72960493 CAGGGGCAC-GAATGTGCATACAAGGACACCAAAGTGTTTA
1 CAGGGGCACAG-ATGTGCAAACAAGAACACCAAAGTGTTTA
* * * *
72960533 TAGGGGCACAGTTGTGCAAATATGAACACCAAAGTGTTTA
1 CAGGGGCACAGATGTGCAAACAAGAACACCAAAGTGTTTA
*
72960573 CAAGGGCAC
1 CAGGGGCAC
72960582 CGAGGTGAAG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
40 39 0.98
41 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (40 bp):
CAGGGGCACAGATGTGCAAACAAGAACACCAAAGTGTTTA
Found at i:72966163 original size:24 final size:24
Alignment explanation
Indices: 72966136--72966202 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
72966126 CTATCCGGAG
72966136 CTTCCCGATATGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
*
72966160 CTTCCCGATAAGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
* *
72966184 CTTCACGATTATGGCTCTT
1 CTTCCCGA-TATGGTTCTT
72966203 ATGAGCTTCC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
24 30 0.79
25 8 0.21
ACGTcount: A:0.18, C:0.22, G:0.19, T:0.40
Consensus pattern (24 bp):
CTTCCCGATATGGTTCTTTGTGAA
Found at i:72969527 original size:40 final size:39
Alignment explanation
Indices: 72969482--72969689 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
72969472 CGGAATACAA
*
72969482 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72969522 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72969562 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
72969602 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
72969642 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
72969682 CCGGATAT
1 CCGGATAT
72969690 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
39 4 0.03
40 136 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72969622 original size:80 final size:81
Alignment explanation
Indices: 72969482--72969687 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
72969472 CGGAATACAA
* * *
72969482 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
72969546 -GCCTTCGGGTATTAGC
65 GGCCTTCGGGTATTAAC
* *
72969562 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
72969625 GGCCTTCGGGTCTTAAC
65 GGCCTTCGGGTATTAAC
** * ** * *
72969642 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
72969688 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 101 0.94
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
GCCTTCGGGTATTAAC
Found at i:72977523 original size:40 final size:39
Alignment explanation
Indices: 72977478--72977685 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
72977468 CGGAATACAA
*
72977478 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72977518 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72977558 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
72977598 CCGGATGTAGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
72977638 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
72977678 CCGGATAT
1 CCGGATAT
72977686 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
39 4 0.03
40 136 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72977618 original size:80 final size:81
Alignment explanation
Indices: 72977478--72977683 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
72977468 CGGAATACAA
* * *
72977478 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
72977542 -GCCTTCGGGTATTAGC
65 GGCCTTCGGGTATTAAC
* *
72977558 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
72977621 GGCCTTCGGGTCTTAAC
65 GGCCTTCGGGTATTAAC
** * ** * *
72977638 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
72977684 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 101 0.94
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
GCCTTCGGGTATTAAC
Found at i:72983347 original size:19 final size:20
Alignment explanation
Indices: 72983323--72983360 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72983313 GGTACCACCA
72983323 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
72983342 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
72983361 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:72983699 original size:93 final size:93
Alignment explanation
Indices: 72983589--72983759 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
72983579 GCCCCTAAGT
* *
72983589 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
72983654 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
72983682 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
72983747 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72983760 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72983756 original size:46 final size:46
Alignment explanation
Indices: 72983584--72983756 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
72983574 AACCCGCCCC
* * * *
72983584 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
72983630 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
72983678 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
72983723 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72983757 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:72984210 original size:30 final size:30
Alignment explanation
Indices: 72984176--72984235 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
72984166 ATTTAATACG
72984176 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
72984206 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
72984236 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:72990892 original size:19 final size:20
Alignment explanation
Indices: 72990868--72990905 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72990858 GGTACCACCA
72990868 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
72990887 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
72990906 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:72991201 original size:46 final size:42
Alignment explanation
Indices: 72991134--72991294 Score: 171
Period size: 46 Copynumber: 3.7 Consensus size: 42
72991124 CGCCCCTAAG
*
72991134 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TT-ACAT-CAT-AA
* ** *
72991180 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C
1 TGAACTCGGACTCAACTCAACGAGTTCGG--GCTTACAT-CATAA
* * *
72991224 TCAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TTACATCATAA
72991267 TGAACTCGGACTCAACTCAACGAGTTCG
1 TGAACTCGGACTCAACTCAACGAGTTCG
72991295 NTACTGTGAT
Statistics
Matches: 97, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 4 0.04
43 29 0.30
44 28 0.29
46 33 0.34
47 1 0.01
48 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (42 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCTTACATCATAA
Found at i:72991254 original size:20 final size:20
Alignment explanation
Indices: 72991229--72991294 Score: 53
Period size: 20 Copynumber: 3.1 Consensus size: 20
72991219 ACATCTCAAC
72991229 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
* * **
72991249 TCGGACATTGCATCAT-AATGAAC
1 TCGGAC--T-CAAC-TCAACGAGT
72991272 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
72991292 TCG
1 TCG
72991295 NTACTGTGAT
Statistics
Matches: 33, Mismatches: 8, Indels: 10
0.65 0.16 0.20
Matches are distributed among these distances:
19 1 0.03
20 16 0.48
21 1 0.03
22 1 0.03
23 13 0.39
24 1 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (20 bp):
TCGGACTCAACTCAACGAGT
Found at i:72998312 original size:40 final size:40
Alignment explanation
Indices: 72998185--72998314 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
72998175 ATGCTGGAAA
* *
72998185 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
72998225 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
72998265 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
72998305 TTATATCCGG
1 TTATATCCGG
72998315 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73006297 original size:40 final size:40
Alignment explanation
Indices: 73006170--73006299 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
73006160 ATGCTGGAAA
* *
73006170 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
73006210 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73006250 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73006290 TTATATCCGG
1 TTATATCCGG
73006300 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73016379 original size:42 final size:42
Alignment explanation
Indices: 73016320--73016483 Score: 163
Period size: 42 Copynumber: 3.9 Consensus size: 42
73016310 TTAGGGTTAC
*
73016320 TGAGATTACGTGCAAGACCATATCTGCGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGCGATATGGCATCGATA
*
73016362 TGAGACTT-CGTGTAAGA-CAGTATCTGGGATATGGCATCGATA
1 TGAGA-TTACGTGTAAGACCA-TATCTGCGATATGGCATCGATA
* * * ** * *
73016404 TGATATTTCGTGTAAGACTATAGATAAGCTAT-TGGCATCTATA
1 TGAGATTACGTGTAAGACCAT--ATCTGCGATATGGCATCGATA
* * *
73016447 CGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGCGATATGGCAT
73016484 TGGTAAGGTA
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 9 0.09
42 54 0.56
43 29 0.30
44 5 0.05
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGCGATATGGCATCGATA
Found at i:73018262 original size:221 final size:222
Alignment explanation
Indices: 73017878--73018324 Score: 824
Period size: 221 Copynumber: 2.0 Consensus size: 222
73017868 TTATACACAT
*
73017878 ACTTAATAAAAGAAAACATACATCATTTAATTTCATAAAAAATGAAATATTCCGTAATAGCATTT
1 ACTTAATAAAAGAAAACATACATCATTTAATTTCATAAAAAATGAAATATTCCATAATAGCATTT
*
73017943 GTTACCTAAAAACAACATTTGCATATCATACATGAACATAAATATGTCATCAACTCAAATAATTA
66 GTTACCTAAAAACAACATTTGCATATCATACATGAACATAAATATGTCATCAACTCAAACAATTA
73018008 AACCACTCATATGAACTAATCAAAATTTCCAAACAGTTTGCCATTTTAATCCGACTCAAGTACCA
131 AACCACTCATATGAACTAATCAAAATTTCCAAACAGTTTGCCATTTTAATCCGACTCAAGTACCA
73018073 CATTCATAAATCAGCTTTCATTGCCCA
196 CATTCATAAATCAGCTTTCATTGCCCA
* *
73018100 ACTTAATAAAAGCAAACATACTTCATTTAATTTCAT-AAAAATGAAATATTCCATAATAGCATTT
1 ACTTAATAAAAGAAAACATACATCATTTAATTTCATAAAAAATGAAATATTCCATAATAGCATTT
*
73018164 GTTACCTAAAAACAACATTTGCATATCATACATGAATATAAATATGTCATCAACTCAAACAATTA
66 GTTACCTAAAAACAACATTTGCATATCATACATGAACATAAATATGTCATCAACTCAAACAATTA
*
73018229 AACCACTCATATGAACTAATCAAAATTTCCAAACAGTTTTCCATTTTAATCCGACTCAAGTACCA
131 AACCACTCATATGAACTAATCAAAATTTCCAAACAGTTTGCCATTTTAATCCGACTCAAGTACCA
*
73018294 CATTCATAAATCAGTTTTCATTGCCCA
196 CATTCATAAATCAGCTTTCATTGCCCA
73018321 ACTT
1 ACTT
73018325 TATCCACAAA
Statistics
Matches: 218, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
221 184 0.84
222 34 0.16
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.31
Consensus pattern (222 bp):
ACTTAATAAAAGAAAACATACATCATTTAATTTCATAAAAAATGAAATATTCCATAATAGCATTT
GTTACCTAAAAACAACATTTGCATATCATACATGAACATAAATATGTCATCAACTCAAACAATTA
AACCACTCATATGAACTAATCAAAATTTCCAAACAGTTTGCCATTTTAATCCGACTCAAGTACCA
CATTCATAAATCAGCTTTCATTGCCCA
Found at i:73018350 original size:16 final size:16
Alignment explanation
Indices: 73018329--73018359 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73018319 CAACTTTATC
*
73018329 CACAAATATTCAATAG
1 CACAAATATTAAATAG
73018345 CACAAATATTAAATA
1 CACAAATATTAAATA
73018360 AGACATAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.16, G:0.03, T:0.26
Consensus pattern (16 bp):
CACAAATATTAAATAG
Found at i:73020851 original size:40 final size:40
Alignment explanation
Indices: 73020743--73020952 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
73020733 CGGGATTTAA
* * * * *
73020743 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
73020783 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73020823 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73020863 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73020903 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73020943 CCGGATATAT
1 CCGGATATAT
73020953 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:73028916 original size:40 final size:40
Alignment explanation
Indices: 73028808--73029017 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
73028798 CGGGATTTAA
* * * * *
73028808 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
73028848 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73028888 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73028928 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73028968 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
73029008 CCGGATATAT
1 CCGGATATAT
73029018 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:73039407 original size:29 final size:28
Alignment explanation
Indices: 73039375--73039477 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
73039365 GTGACGAGAT
* *
73039375 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
73039404 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
73039433 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
73039462 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73039478 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:73041393 original size:27 final size:27
Alignment explanation
Indices: 73041355--73041408 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
73041345 CGTTGTAGAA
* *
73041355 GTTGGTGAGGTTGTACATCGCTGAGAT
1 GTTGGTGAGGTTCTACATCACTGAGAT
73041382 GTTGGTGAGGTTCTACATCACTGAGAT
1 GTTGGTGAGGTTCTACATCACTGAGAT
73041409 TGTGAGACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.20, C:0.13, G:0.33, T:0.33
Consensus pattern (27 bp):
GTTGGTGAGGTTCTACATCACTGAGAT
Found at i:73042533 original size:39 final size:39
Alignment explanation
Indices: 73042479--73042556 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
73042469 ATTTTTAGCA
*
73042479 TGTGCTAGCTAGCCTTTCCGTCCACCTATGTTGCCATAT
1 TGTGCTAGCTAGCCTTGCCGTCCACCTATGTTGCCATAT
* *
73042518 TGTGCTAGCTAGCCTTGCTGTCCAGCTATGTTGCCATAT
1 TGTGCTAGCTAGCCTTGCCGTCCACCTATGTTGCCATAT
73042557 AGGGAGGACT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.15, C:0.28, G:0.21, T:0.36
Consensus pattern (39 bp):
TGTGCTAGCTAGCCTTGCCGTCCACCTATGTTGCCATAT
Found at i:73045037 original size:13 final size:13
Alignment explanation
Indices: 73045017--73045049 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
73045007 TTATCTAGCC
73045017 TTAT-TAAACTAA
1 TTATCTAAACTAA
73045029 TTATCTAAACTAA
1 TTATCTAAACTAA
*
73045042 TTAACTAA
1 TTATCTAA
73045050 TTTAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:73051849 original size:30 final size:30
Alignment explanation
Indices: 73051815--73051875 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
73051805 TCCTTAACTC
73051815 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
73051845 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
73051875 A
1 A
73051876 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:73053012 original size:26 final size:26
Alignment explanation
Indices: 73052982--73053034 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
73052972 ATACCTCCTT
*
73052982 CTTTGGTACGCACTAGACCAGACTTA
1 CTTTGGTACGCACTAGACCAAACTTA
* *
73053008 CTTTGGTATGCATTAGACCAAACTTA
1 CTTTGGTACGCACTAGACCAAACTTA
73053034 C
1 C
73053035 CCATCAACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
CTTTGGTACGCACTAGACCAAACTTA
Found at i:73054213 original size:13 final size:13
Alignment explanation
Indices: 73054195--73054220 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73054185 ATATTATAAT
73054195 TATTTTATGTTAA
1 TATTTTATGTTAA
73054208 TATTTTATGTTAA
1 TATTTTATGTTAA
73054221 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:73055833 original size:39 final size:40
Alignment explanation
Indices: 73055736--73055833 Score: 144
Period size: 40 Copynumber: 2.5 Consensus size: 40
73055726 CGGATGATAA
*
73055736 CCGGGCTAAGTCCCAAAGGCAATTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
* *
73055776 CCGGGCTAGGTCCCGAAGGCAATTGTGCTAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
* *
73055816 CC-GGCTAATTCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73055834 TACTTGGGTT
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 13 0.25
40 39 0.75
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
Found at i:73060792 original size:14 final size:14
Alignment explanation
Indices: 73060773--73060800 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73060763 GAGAATAATT
73060773 TTAAAACTTGCATC
1 TTAAAACTTGCATC
73060787 TTAAAACTTGCATC
1 TTAAAACTTGCATC
73060801 ACTATCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
TTAAAACTTGCATC
Found at i:73061715 original size:27 final size:27
Alignment explanation
Indices: 73061613--73061729 Score: 110
Period size: 27 Copynumber: 4.3 Consensus size: 27
73061603 GGGCAAATCA
* * * *
73061613 GTCATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTATAAGGGTATTTCG
* *
73061640 GTCATTTTACCCTATACGGATATTTCG
1 GTCATTTTACCCTATAAGGGTATTTCG
* * * *
73061667 GTTATTCTACCCTA-AGAAGGTATTTTG
1 GTCATTTTACCCTATA-AGGGTATTTCG
* *
73061694 GTCATCTTACCCTATAAGGGTATATCG
1 GTCATTTTACCCTATAAGGGTATTTCG
73061721 GTCATTTTA
1 GTCATTTTA
73061730 TCACATAAGG
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
26 1 0.01
27 68 0.97
28 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATAAGGGTATTTCG
Found at i:73061737 original size:27 final size:26
Alignment explanation
Indices: 73061707--73062007 Score: 302
Period size: 27 Copynumber: 11.3 Consensus size: 26
73061697 ATCTTACCCT
*
73061707 ATAAGGGTATATCGGTCATTTTATCAC
1 ATAAGGGTAAATC-GTCATTTTATCAC
*
73061734 ATAAGGGCAAAATCGTCATTTTATCAC
1 ATAAGGG-TAAATCGTCATTTTATCAC
* * *
73061761 GTGAGGGCAAAATCGTCATTTTATCAC
1 ATAAGGG-TAAATCGTCATTTTATCAC
* * *
73061788 GTGAGGGCAAAATCGTCATTTTATCAC
1 ATAAGGG-TAAATCGTCATTTTATCAC
* * *
73061815 ATGAGGGCAATATTGTCATTTTATCAC
1 ATAAGGGTAA-ATCGTCATTTTATCAC
*
73061842 ATAAGGGTAAAATCGTCACTTTATCAC
1 ATAAGGGT-AAATCGTCATTTTATCAC
* *
73061869 ATAA-GGTAATATCCTCATCTTATCAC
1 ATAAGGGTAA-ATCGTCATTTTATCAC
*
73061895 ATAAGGGTAAAATCATCATTTTATCAC
1 ATAAGGGT-AAATCGTCATTTTATCAC
* * *
73061922 TTCA-GGTAATATCGTCATCTTATCAC
1 ATAAGGGTAA-ATCGTCATTTTATCAC
73061948 ATAAGGGTAAAATCGTCATTTTATCAC
1 ATAAGGGT-AAATCGTCATTTTATCAC
* *
73061975 ATAA-GGCAATATCGTCATCTTATCAC
1 ATAAGGGTAA-ATCGTCATTTTATCAC
73062001 ATAAGGG
1 ATAAGGG
73062008 GGTCTAGTAT
Statistics
Matches: 238, Mismatches: 25, Indels: 22
0.84 0.09 0.08
Matches are distributed among these distances:
25 6 0.03
26 62 0.26
27 160 0.67
28 10 0.04
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.33
Consensus pattern (26 bp):
ATAAGGGTAAATCGTCATTTTATCAC
Found at i:73061902 original size:53 final size:53
Alignment explanation
Indices: 73061715--73062007 Score: 388
Period size: 53 Copynumber: 5.5 Consensus size: 53
73061705 CTATAAGGGT
* * * *
73061715 ATATCGGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACGTGAGGGCA
1 ATATC-GTCATCTTATCACATAAGGGTAAAATCGTCATTTTATCACAT-AAGGCA
* * * * * *
73061770 AAATCGTCATTTTATCACGTGAGGGCAAAATCGTCATTTTATCACATGAGGGCA
1 ATATCGTCATCTTATCACATAAGGGTAAAATCGTCATTTTATCACAT-AAGGCA
* * * *
73061824 ATATTGTCATTTTATCACATAAGGGTAAAATCGTCACTTTATCACATAAGGTA
1 ATATCGTCATCTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGCA
* * * * *
73061877 ATATCCTCATCTTATCACATAAGGGTAAAATCATCATTTTATCACTTCAGGTA
1 ATATCGTCATCTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGCA
73061930 ATATCGTCATCTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGCA
1 ATATCGTCATCTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGCA
73061983 ATATCGTCATCTTATCACATAAGGG
1 ATATCGTCATCTTATCACATAAGGG
73062008 GGTCTAGTAT
Statistics
Matches: 214, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 123 0.57
54 87 0.41
55 4 0.02
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (53 bp):
ATATCGTCATCTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGCA
Found at i:73064367 original size:28 final size:27
Alignment explanation
Indices: 73064316--73064377 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
73064306 CCTATTAAAT
*
73064316 AACAGTAAAGTCTGGGCCATAGCCCTA
1 AACAGTAAAGTCTGGGCCATAGCCCAA
* *
73064343 TACAGTAACAGTGTGGGCC-TAAGCCCAA
1 AACAGTAA-AGTCTGGGCCAT-AGCCCAA
73064371 AACAGTA
1 AACAGTA
73064378 TTAGTACAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (27 bp):
AACAGTAAAGTCTGGGCCATAGCCCAA
Found at i:73072288 original size:18 final size:19
Alignment explanation
Indices: 73072251--73072288 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
73072241 GATTTGATAC
*
73072251 GATATGCACATGATATGTAT
1 GATATACACATGA-ATGTAT
73072271 GATATACACATG-ATGTAT
1 GATATACACATGAATGTAT
73072289 TCATTTATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (19 bp):
GATATACACATGAATGTAT
Found at i:73072427 original size:25 final size:25
Alignment explanation
Indices: 73072331--73072425 Score: 156
Period size: 25 Copynumber: 3.8 Consensus size: 25
73072321 GAGGAAGTGC
*
73072331 AAAAGGGCTATGCCCCAG-TTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
73072355 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
73072380 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
73072405 AAAAGGGCCTTTGCCCCAGTT
1 AAAAGGG-CTTTGCCCCAGTT
73072426 ATTAAAAGAG
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
24 17 0.25
25 37 0.55
26 13 0.19
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:73072683 original size:31 final size:31
Alignment explanation
Indices: 73072645--73072719 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 31
73072635 TTGTTACATT
*
73072645 AAAGGCTTCAGTCC-AGTGATACGAATAATGA
1 AAAGGCTTC-GGCCTAGTGATACGAATAATGA
* *
73072676 AAAGGCTTCGGCCTAGTGATATGAATAATGT
1 AAAGGCTTCGGCCTAGTGATACGAATAATGA
*
73072707 GAAGGCTTCGGCC
1 AAAGGCTTCGGCC
73072720 CAGTATATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 3 0.08
31 36 0.92
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCTAGTGATACGAATAATGA
Found at i:73072991 original size:5 final size:5
Alignment explanation
Indices: 73072981--73073005 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
73072971 CCATTTTAAC
73072981 TTTCT TTTCT TTTCT TTTCT TTTCT
1 TTTCT TTTCT TTTCT TTTCT TTTCT
73073006 GGGATTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTCT
Found at i:73079016 original size:41 final size:41
Alignment explanation
Indices: 73078959--73079040 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
73078949 TGGAAATCTC
*
73078959 GTATAACTCATACAATGCCATATCCTAGATATGGTCTTACA
1 GTATAACTCATACAATGCCATATCCTAAATATGGTCTTACA
73079000 GTATAACTCATACAATGCCATATCCTAAATATGGTCTTACA
1 GTATAACTCATACAATGCCATATCCTAAATATGGTCTTACA
73079041 TTTTATAGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (41 bp):
GTATAACTCATACAATGCCATATCCTAAATATGGTCTTACA
Found at i:73079146 original size:43 final size:43
Alignment explanation
Indices: 73079056--73079203 Score: 171
Period size: 43 Copynumber: 3.5 Consensus size: 43
73079046 TAGTATATCG
* *
73079056 ATGCCAATAG-CCCAG-CTATGGTCTTACAC-AAATC-TCATATCG
1 ATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAAATCAT-ATAACA
* *
73079098 ATGCCAATGTCCAAGACATGGTCTTACACGAAATCATATAACT
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATAACA
* *
73079141 ATGCCAATGTCCCAGAAATGGTCTTACACGTAATCATA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATA-ACA
73079184 ATGCCAATGTCCCAGACATG
1 ATGCCAATGTCCCAGACATG
73079204 TAATCACATC
Statistics
Matches: 93, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 66 0.71
44 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATAACA
Found at i:73089729 original size:27 final size:27
Alignment explanation
Indices: 73089281--73089728 Score: 591
Period size: 27 Copynumber: 16.6 Consensus size: 27
73089271 AAAGTACTCC
73089281 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
73089308 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
73089335 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
***
73089362 C-AGTTTACAGAATTATTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
73089389 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73089416 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73089443 CGATTT-CTAAAATTACCGTTTTACCCT
1 CGATTTAC-AGAATTACCGTTTTACCCT
73089470 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
73089497 CAATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73089524 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
73089550 CTAATTTACATAATTACCATTTTACCC-
1 C-GATTTACAGAATTACCGTTTTACCCT
* * *
73089577 CAAATTTACATAATTATCGTTTTACCCT
1 C-GATTTACAGAATTACCGTTTTACCCT
73089605 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73089632 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73089659 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73089686 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73089713 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
73089729 TAAAATACCC
Statistics
Matches: 372, Mismatches: 41, Indels: 16
0.87 0.10 0.04
Matches are distributed among these distances:
26 3 0.01
27 365 0.98
28 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:73091070 original size:9 final size:9
Alignment explanation
Indices: 73091058--73091134 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
73091048 TTTGATAAAC
73091058 ATGATATGT
1 ATGATATGT
*
73091067 ATGATATGCAC
1 ATGATATG--T
73091078 ATGATATGT
1 ATGATATGT
*
73091087 ATGATATGCAC
1 ATGATATG--T
*
73091098 ATGACATGT
1 ATGATATGT
*
73091107 ATGATATGCAC
1 ATGATATG--T
73091118 ATGATATGT
1 ATGATATGT
73091127 ATGATATG
1 ATGATATG
73091135 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:73091083 original size:11 final size:11
Alignment explanation
Indices: 73091067--73091138 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
73091057 CATGATATGT
73091067 ATGATATGCAC
1 ATGATATGCAC
*
73091078 ATGATATG--T
1 ATGATATGCAC
73091087 ATGATATGCAC
1 ATGATATGCAC
* *
73091098 ATGACATG--T
1 ATGATATGCAC
73091107 ATGATATGCAC
1 ATGATATGCAC
*
73091118 ATGATATG--T
1 ATGATATGCAC
73091127 ATGATATGCAC
1 ATGATATGCAC
73091138 A
1 A
73091139 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:73091146 original size:20 final size:20
Alignment explanation
Indices: 73091056--73091138 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
73091046 ATTTTGATAA
73091056 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73091076 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
73091096 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
73091116 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73091136 ACA
1 ACA
73091139 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:73091247 original size:24 final size:23
Alignment explanation
Indices: 73091192--73091361 Score: 250
Period size: 24 Copynumber: 7.2 Consensus size: 23
73091182 GGAGGAAGTG
*
73091192 AAAAAGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
73091215 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
73091238 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
73091262 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
73091285 CAAAAGGGCTTACGTCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
73091309 TAAAGGGCTTATGCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
73091332 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
73091357 AAAAG
1 AAAAG
73091362 ATGCTAGGCC
Statistics
Matches: 133, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
23 64 0.48
24 68 0.51
25 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:73091261 original size:47 final size:47
Alignment explanation
Indices: 73091192--73091361 Score: 268
Period size: 47 Copynumber: 3.6 Consensus size: 47
73091182 GGAGGAAGTG
*
73091192 AAAAAGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
73091239 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * * * *
73091286 AAAAGGGCTTACGTCCCAGTTATTAAAGGGCTTATGCTCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
*
73091333 AAAAGGGCTTTTGCCCCAGTTATTAAAAG
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG
73091362 ATGCTAGGCC
Statistics
Matches: 112, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 107 0.96
48 5 0.04
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:73091608 original size:31 final size:31
Alignment explanation
Indices: 73091573--73091636 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
73091563 CGTTTACCGT
* *
73091573 AAAGGCTTCGGCCGAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
73091604 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
73091635 AA
1 AA
73091637 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:73096553 original size:15 final size:15
Alignment explanation
Indices: 73096524--73096568 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
73096514 AGTGCTGTAA
73096524 ATGGTATTTCCTTATC
1 ATGG-ATTTCCTTATC
*
73096540 ATGGATTTCTTTATC
1 ATGGATTTCCTTATC
*
73096555 TTGGATTTCCTTAT
1 ATGGATTTCCTTAT
73096569 TCTGGGCTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (15 bp):
ATGGATTTCCTTATC
Found at i:73099147 original size:49 final size:50
Alignment explanation
Indices: 73099057--73099289 Score: 276
Period size: 49 Copynumber: 4.7 Consensus size: 50
73099047 ATCTATTGCG
*
73099057 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATT
* * * *
73099107 -GGTCGCATGTGTAGTACTAAGTGCAGGCAACTA-TTCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGT-GTACCTGATAA-TT
* * * * **
73099157 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TTAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCT-GATAATT
* *
73099207 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATT
* *
73099257 -GGTCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
73099290 TGCGTACCAA
Statistics
Matches: 154, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
48 1 0.01
49 70 0.45
50 47 0.31
51 35 0.23
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATT
Found at i:73101280 original size:20 final size:21
Alignment explanation
Indices: 73101238--73101280 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
73101228 TTTCTAGTTT
73101238 AATTATGTTATAATTGTTGTA
1 AATTATGTTATAATTGTTGTA
*
73101259 AATTGTGTT-TAATT-TTGCTA
1 AATTATGTTATAATTGTTG-TA
73101279 AA
1 AA
73101281 ATCGATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 3 0.15
20 9 0.45
21 8 0.40
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.51
Consensus pattern (21 bp):
AATTATGTTATAATTGTTGTA
Found at i:73102944 original size:29 final size:29
Alignment explanation
Indices: 73102911--73103042 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
73102901 GTGACGAGAT
*
73102911 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
73102940 TGGCACTAAGTGTGCGTGCTGGAGATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
73102969 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
73102998 TGGCACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
73103027 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
73103043 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:73104545 original size:40 final size:40
Alignment explanation
Indices: 73104419--73104584 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
73104409 CGGAATATAA
* *
73104419 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
* * *
73104458 CCGGATAGAATAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCAC-AATTGCCTTCGGGTCTTAGC
* *
73104498 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
** * * *
73104538 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
73104577 CCGGATAT
1 CCGGATAT
73104585 CATTCAATTT
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
39 27 0.25
40 80 0.73
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:73105427 original size:17 final size:19
Alignment explanation
Indices: 73105404--73105449 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
73105394 AAGAAGCATG
73105404 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
73105422 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
73105440 AATCATGCTC
1 AATCATGCTC
73105450 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73116542 original size:22 final size:22
Alignment explanation
Indices: 73116494--73116545 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
73116484 TACTTCATGG
* * *
73116494 AGTGTGAACACATTTATGTTTT
1 AGTGTGAACACAATTAAGTGTT
73116516 AGTGTGAACA-AATTAAGTGTT
1 AGTGTGAACACAATTAAGTGTT
73116537 AGGTGTGAA
1 A-GTGTGAA
73116546 TGTGTTTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (22 bp):
AGTGTGAACACAATTAAGTGTT
Found at i:73116943 original size:19 final size:19
Alignment explanation
Indices: 73116916--73116954 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
73116906 TTATTCCAGC
73116916 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
*
73116935 AACTTAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
73116954 A
1 A
73116955 GTAATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.28
Consensus pattern (19 bp):
AACTAAATTAACTAAGATG
Found at i:73116966 original size:54 final size:54
Alignment explanation
Indices: 73116906--73117023 Score: 200
Period size: 54 Copynumber: 2.2 Consensus size: 54
73116896 CAACAAGAAA
*
73116906 TTATTCCAGCAACTAAATTAACTAAGATGAACTTAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
* * *
73116960 TTATTCCAGCAATTTAATTAACTAGGATGAACTCAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
73117014 TTATTCCAGC
1 TTATTCCAGC
73117024 GACTTAAGTA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (54 bp):
TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
Found at i:73127162 original size:25 final size:25
Alignment explanation
Indices: 73127134--73127183 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
73127124 TGGTTCGAGA
73127134 CTAAACCAATAACACAAGAAATTTT
1 CTAAACCAATAACACAAGAAATTTT
* *
73127159 CTAAACTAATAACGCAAGAAATTTT
1 CTAAACCAATAACACAAGAAATTTT
73127184 TTTACAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.50, C:0.18, G:0.06, T:0.26
Consensus pattern (25 bp):
CTAAACCAATAACACAAGAAATTTT
Found at i:73130654 original size:22 final size:23
Alignment explanation
Indices: 73130637--73130680 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
73130627 TATCAATTTC
73130637 ATAATCTAAAGGTTTCAAAGTCT
1 ATAATCTAAAGGTTTCAAAGTCT
* *
73130660 ATAGTCTAAAGTTTTCAAAGT
1 ATAATCTAAAGGTTTCAAAGT
73130681 TTTCCAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (23 bp):
ATAATCTAAAGGTTTCAAAGTCT
Found at i:73137047 original size:27 final size:26
Alignment explanation
Indices: 73136993--73137103 Score: 123
Period size: 27 Copynumber: 4.2 Consensus size: 26
73136983 AGCATTGCTG
* **
73136993 CCAGAACAGATAATGTGACAGAATCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
73137019 CCAGAATAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
*
73137046 CCAGAACAGATATATGTCGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
73137073 GCAGATCAGATGAATGTGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAGAGCCA
73137100 CCAG
1 CCAG
73137104 GATGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
26 12 0.17
27 57 0.80
28 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:73138526 original size:24 final size:24
Alignment explanation
Indices: 73138491--73138591 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
73138481 CCAACACTGT
* *
73138491 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
73138515 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
73138539 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
73138563 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
73138587 TCTCC
1 TCTCC
73138592 TGACAGACTT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.25, C:0.41, G:0.02, T:0.33
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:73144818 original size:26 final size:26
Alignment explanation
Indices: 73144789--73144895 Score: 142
Period size: 27 Copynumber: 4.0 Consensus size: 26
73144779 TTGCTGCCAT
* *
73144789 AACAGATAATGTGACAGAGTCACCAG
1 AACAGATAATGTGGCAGAGCCACCAG
*
73144815 AACAGATAATTGTGGTAGAGCCACCAG
1 AACAGATAA-TGTGGCAGAGCCACCAG
73144842 AACAGATATATGTGGCAGAGCCACCAG
1 AACAGATA-ATGTGGCAGAGCCACCAG
* *
73144869 ATCAGATAAATGTGGCATAGCCACCAG
1 AACAGAT-AATGTGGCAGAGCCACCAG
73144896 GACGCTTTCT
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 9 0.12
27 61 0.85
28 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (26 bp):
AACAGATAATGTGGCAGAGCCACCAG
Found at i:73148341 original size:24 final size:24
Alignment explanation
Indices: 73148306--73148406 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
73148296 CCAACACTGT
* *
73148306 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
73148330 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
73148354 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* *
73148378 TATCCCTTATCAACTCTTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
73148402 TCTCC
1 TCTCC
73148407 TGACAGACTT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.25, C:0.40, G:0.02, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:73154728 original size:27 final size:27
Alignment explanation
Indices: 73154671--73154781 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
73154661 AGCATTGCTG
* * *
73154671 CCAGAATAGATAA-TGTTGCAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
73154697 CCAGAACAGATAATTGTGGCAAAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
73154724 CCAGAACAGAT-ATATGTGGCAGAGCTA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
73154751 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
73154778 CCAG
1 CCAG
73154782 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.19
27 57 0.79
28 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:73154761 original size:54 final size:53
Alignment explanation
Indices: 73154671--73154781 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 53
73154661 AGCATTGCTG
* * *
73154671 CCAGAATAGATAATGTTGCAGAGTCACCAGAACAGATAATTGTGGCAAAGCCA
1 CCAGAACAGATAATGTGGCAGAGTCACCAGAACAGATAAATGTGGCAAAGCCA
* *
73154724 CCAGAACAGATATATGTGGCAGAG-CTACCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGTC-ACCAGAACAGATAAATGTGGCAAAGCCA
73154778 CCAG
1 CCAG
73154782 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
53 12 0.24
54 39 0.76
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (53 bp):
CCAGAACAGATAATGTGGCAGAGTCACCAGAACAGATAAATGTGGCAAAGCCA
Found at i:73156202 original size:24 final size:24
Alignment explanation
Indices: 73156182--73156264 Score: 116
Period size: 24 Copynumber: 3.5 Consensus size: 24
73156172 ATCAGCTTTC
73156182 AAATCCTCTCCCTTATAAGCTCCT
1 AAATCCTCTCCCTTATAAGCTCCT
*
73156206 AAATCCTATCCCTTATCAA-CTCCT
1 AAATCCTCTCCCTTAT-AAGCTCCT
*
73156230 AAATCCTATCCCTTATCAA-CTCCT
1 AAATCCTCTCCCTTAT-AAGCTCCT
73156254 AAATCCTCTCC
1 AAATCCTCTCC
73156265 TGACAGACTT
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
24 54 0.96
25 2 0.04
ACGTcount: A:0.28, C:0.39, G:0.01, T:0.33
Consensus pattern (24 bp):
AAATCCTCTCCCTTATAAGCTCCT
Found at i:73160004 original size:43 final size:43
Alignment explanation
Indices: 73159942--73160156 Score: 299
Period size: 43 Copynumber: 5.0 Consensus size: 43
73159932 TATGTGATTC
*
73159942 CGATATGTGATTACGTGTAAGAACACGTCTGGGAAGTTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGAAGTTGGCAT
* * * *
73159985 TGATATGTGATTATGTGTAAGACCATGTCTGGGATGTTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGAAGTTGGCAT
* *
73160028 CGATATGTGATTACGTATAAGACCACGTCTGGGATGTTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGAAGTTGGCAT
* *
73160071 CGATATGTGATTACGTGTGAGACC-CTATCTGGGATAG-TGGCAT
1 CGATATGTGATTACGTGTAAGACCAC-GTCTGGGA-AGTTGGCAT
* *
73160114 CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGAAGTTGGCAT
73160157 TGTACGATAT
Statistics
Matches: 151, Mismatches: 17, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
42 2 0.01
43 147 0.97
44 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCACGTCTGGGAAGTTGGCAT
Found at i:73166274 original size:15 final size:14
Alignment explanation
Indices: 73166256--73166311 Score: 58
Period size: 15 Copynumber: 3.8 Consensus size: 14
73166246 ATAATAAAGA
73166256 AATCCAAGATAGAGG
1 AATCCAAGATA-AGG
*
73166271 AATCCAAGATAAAG
1 AATCCAAGATAAGG
* *
73166285 ATATCCAAGGTATAGA
1 A-ATCCAAGATA-AGG
73166301 AATCCAAGATA
1 AATCCAAGATA
73166312 CCATATCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 3 0.09
15 29 0.85
16 2 0.06
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.18
Consensus pattern (14 bp):
AATCCAAGATAAGG
Found at i:73166284 original size:30 final size:30
Alignment explanation
Indices: 73166249--73166311 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
73166239 GAAAACCATA
*
73166249 ATAAAGAAATCCAAGATAGAGGAATCCAAG
1 ATAAAGAAATCCAAGATAGAGAAATCCAAG
* * *
73166279 ATAAAGATATCCAAGGTATAGAAATCCAAG
1 ATAAAGAAATCCAAGATAGAGAAATCCAAG
73166309 ATA
1 ATA
73166312 CCATATCATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.17
Consensus pattern (30 bp):
ATAAAGAAATCCAAGATAGAGAAATCCAAG
Found at i:73167897 original size:20 final size:20
Alignment explanation
Indices: 73167847--73167890 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
73167837 GTGTGGTCAC
*
73167847 ACACGCCCGTGTGGCTTGGG
1 ACACACCCGTGTGGCTTGGG
73167867 ACACACCCGTGTGGCTTGGG
1 ACACACCCGTGTGGCTTGGG
73167887 ACAC
1 ACAC
73167891 GTTCGTGCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (20 bp):
ACACACCCGTGTGGCTTGGG
Found at i:73171383 original size:2 final size:2
Alignment explanation
Indices: 73171376--73171407 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
73171366 TCGGTTAAAT
73171376 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
73171408 AACTTGTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:73178177 original size:43 final size:43
Alignment explanation
Indices: 73178059--73178178 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 43
73178049 TATGTGATTC
* * * *
73178059 CGATATTTGATTACGTCTAAGACCACGTCTGGAACATTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCAT
* *
73178102 CGATATGTGATTATGTGTTAGACC-CTGTCTGGGACAGTGGCAT
1 CGATATGTGATTACGTGTAAGACCAC-GTCTGGGACAGTGGCAT
*
73178145 CGATATGTGATTACATGTAAGACCACGTCTGGGA
1 CGATATGTGATTACGTGTAAGACCACGTCTGGGA
73178179 TGTCGGCATT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.02
43 64 0.97
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCAT
Found at i:73180004 original size:49 final size:49
Alignment explanation
Indices: 73179934--73180281 Score: 590
Period size: 49 Copynumber: 7.3 Consensus size: 49
73179924 CCCTTCGGGA
*
73179934 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
73179981 CTTATCACATATATATACACTTTCACATTCATCAC-TCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
73180029 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
73180078 CTTATCACATATATACACACTTTCACATTCATCACATCGGCC---A---
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
73180121 -TTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
73180169 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
73180218 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
73180267 CTTATCACATATATA
1 CTTATCACATATATA
73180282 TATCTCATAC
Statistics
Matches: 288, Mismatches: 3, Indels: 18
0.93 0.01 0.06
Matches are distributed among these distances:
42 40 0.14
45 1 0.00
46 1 0.00
47 10 0.03
48 49 0.17
49 187 0.65
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73180105 original size:18 final size:18
Alignment explanation
Indices: 73180082--73180147 Score: 53
Period size: 18 Copynumber: 3.3 Consensus size: 18
73180072 TTAGGCCTTA
73180082 TCACATATATACACACTT
1 TCACATATATACACACTT
*
73180100 TCACAT-TCATCACATCGGCCATT
1 TCACATAT-AT-ACA-C--AC-TT
73180123 ATCACATATATACACACTT
1 -TCACATATATACACACTT
73180142 TCACAT
1 TCACAT
73180148 TCTTCACATC
Statistics
Matches: 38, Mismatches: 2, Indels: 16
0.68 0.04 0.29
Matches are distributed among these distances:
17 1 0.03
18 14 0.37
19 5 0.13
20 2 0.05
22 2 0.05
23 5 0.13
24 8 0.21
25 1 0.03
ACGTcount: A:0.35, C:0.30, G:0.03, T:0.32
Consensus pattern (18 bp):
TCACATATATACACACTT
Found at i:73180185 original size:91 final size:93
Alignment explanation
Indices: 73179933--73180281 Score: 537
Period size: 91 Copynumber: 3.7 Consensus size: 93
73179923 GCCCTTCGGG
*
73179933 ACTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 ACTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
73179996 TACACTTTCACATTCATCAC-TCGGCCATT
66 CACACTTTCACATTCATCACATCGGCC--T
*
73180025 AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 A---CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
73180090 ATACACACTTTCACATTCATCACATCGGCC-
63 ATACACACTTTCACATTCATCACATCGGCCT
*
73180120 A-TTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCACATATATA
1 ACTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
73180184 CACACTTTCACATTCATCACATCGGCCATT
66 CACACTTTCACATTCATCACATCGGCC--T
73180214 AGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 A---CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
73180279 ATA
63 ATA
73180282 TATCTCATAC
Statistics
Matches: 240, Mismatches: 4, Indels: 20
0.91 0.02 0.08
Matches are distributed among these distances:
91 88 0.37
92 1 0.00
94 1 0.00
95 11 0.05
96 1 0.00
97 70 0.29
98 68 0.28
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (93 bp):
ACTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACACTTTCACATTCATCACATCGGCCT
Found at i:73180190 original size:140 final size:139
Alignment explanation
Indices: 73179934--73180263 Score: 538
Period size: 140 Copynumber: 2.3 Consensus size: 139
73179924 CCCTTCGGGA
* *
73179934 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCC---A----TTATCACATATATAC
*
73179997 ACACTTTCACATTCATCACTCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
59 ACACTTTCACATTCATCACTCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATC
73180062 ACATCGGCCATTAGGC
124 ACATCGGCCATTAGGC
73180078 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTATCACATATATACACACTTT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTATCACATATATACACACTTT
*
73180143 CACATTCTTCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
66 CACATTCATCAC-TCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
73180208 GCCATTAGGC
130 GCCATTAGGC
73180218 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTA
73180264 GGCCTTATCA
Statistics
Matches: 179, Mismatches: 4, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
139 32 0.18
140 107 0.60
143 1 0.01
144 10 0.06
145 1 0.01
146 28 0.16
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (139 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTATCACATATATACACACTTT
CACATTCATCACTCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
CCATTAGGC
Found at i:73184021 original size:40 final size:40
Alignment explanation
Indices: 73183961--73184120 Score: 277
Period size: 40 Copynumber: 4.0 Consensus size: 40
73183951 GCCTGAATAC
* *
73183961 ACATCACCAGCAT-AATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCATGAA-TGCTCTTCGGGACTTAGCCCGGAT
*
73184001 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGAT
1 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
73184041 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
73184081 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
73184121 CGTCGTCGAG
Statistics
Matches: 115, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
40 113 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:73186564 original size:49 final size:49
Alignment explanation
Indices: 73186485--73186791 Score: 582
Period size: 49 Copynumber: 6.3 Consensus size: 49
73186475 CCCTTCGGGA
*
73186485 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
73186532 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
73186581 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
73186630 CTTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
73186679 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
73186728 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
73186777 CTTATCACATATATA
1 CTTATCACATATATA
73186792 TATCTCATAC
Statistics
Matches: 255, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
47 10 0.04
48 1 0.00
49 244 0.96
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73197403 original size:40 final size:39
Alignment explanation
Indices: 73197359--73197551 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
73197349 GTTCAAAACA
* * ** * *
73197359 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73197399 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73197439 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73197478 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73197517 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
73197552 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73197470 original size:39 final size:39
Alignment explanation
Indices: 73197389--73197551 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
73197379 TATGGTAACC
* *
73197389 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73197429 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73197468 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73197507 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73197546 CGCACA
1 CGCACA
73197552 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73205148 original size:40 final size:39
Alignment explanation
Indices: 73205104--73205296 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
73205094 GTTCAAAACA
* * ** * *
73205104 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73205144 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73205184 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73205223 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73205262 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
73205297 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Done.