Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 235 of 433
Found at i:73205215 original size:39 final size:39
Alignment explanation
Indices: 73205134--73205296 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
73205124 TATGGTAACC
* *
73205134 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73205174 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73205213 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73205252 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73205291 CGCACA
1 CGCACA
73205297 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73209005 original size:27 final size:27
Alignment explanation
Indices: 73208931--73209104 Score: 93
Period size: 27 Copynumber: 6.4 Consensus size: 27
73208921 TGTCTCTCAG
* * * *
73208931 TGTTTGTCACACGCACTATTCCTTCAG
1 TGTTTGCCATACGTACTATTCCTTCAA
** * *
73208958 TGTTCACCGTATGTA-TCATTCCTTCAA
1 TGTTTGCCATACGTACT-ATTCCTTCAA
* * *
73208985 TGTTTTCCATACGAACTATTCCTTCAG
1 TGTTTGCCATACGTACTATTCCTTCAA
* * * * *
73209012 TGTTCT-CCTTACGCACTACTCTTTTAGA
1 TGTT-TGCCATACGTACTATTCCTTCA-A
* * *
73209040 -GTTTGCCATATGTATTATTCCTTCAG
1 TGTTTGCCATACGTACTATTCCTTCAA
* * *
73209066 TGTCTGCCATATGTACTATTCGTTCAA
1 TGTTTGCCATACGTACTATTCCTTCAA
*
73209093 TGTTTACCATAC
1 TGTTTGCCATAC
73209105 CATCCAGTCT
Statistics
Matches: 106, Mismatches: 35, Indels: 12
0.69 0.23 0.08
Matches are distributed among these distances:
26 2 0.02
27 102 0.96
28 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.13, T:0.41
Consensus pattern (27 bp):
TGTTTGCCATACGTACTATTCCTTCAA
Found at i:73209103 original size:54 final size:53
Alignment explanation
Indices: 73208945--73209104 Score: 135
Period size: 54 Copynumber: 3.0 Consensus size: 53
73208935 TGTCACACGC
* * *
73208945 ACTATTCCTTCAGTGTTCACCGTATGTA-TCATTCCTTCAATGTTTTCCATACGA
1 ACTATTCCTTCAGTG-TCTCCATATGTACT-ATTCCTTCAATGTTTACCATACGA
* * * * * * * * *
73208999 ACTATTCCTTCAGTGTTCTCCTTACGCACTACTCTTTTAGA-GTTTGCCATATGT
1 ACTATTCCTTCAGTG-TCTCCATATGTACTATTCCTTCA-ATGTTTACCATACGA
* *
73209053 ATTATTCCTTCAGTGTCTGCCATATGTACTATTCGTTCAATGTTTACCATAC
1 ACTATTCCTTCAGTGTCT-CCATATGTACTATTCCTTCAATGTTTACCATAC
73209105 CATCCAGTCT
Statistics
Matches: 83, Mismatches: 19, Indels: 8
0.75 0.17 0.07
Matches are distributed among these distances:
53 4 0.05
54 77 0.93
55 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.42
Consensus pattern (53 bp):
ACTATTCCTTCAGTGTCTCCATATGTACTATTCCTTCAATGTTTACCATACGA
Found at i:73209334 original size:27 final size:27
Alignment explanation
Indices: 73209302--73209391 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
73209292 CCACGAATCG
*
73209302 TCCATTTCATAAATTGCCACAAAGACT
1 TCCATTTCATAAATTGCCACAAAGGCT
* * * *
73209329 TCCATTTCATGGATTTGCTACAAAGGGT
1 TCCATTTCAT-AAATTGCCACAAAGGCT
* * *
73209357 TTCATTTCATAGATTGCCACAAGGGCT
1 TCCATTTCATAAATTGCCACAAAGGCT
73209384 TCCATTTC
1 TCCATTTC
73209392 TCCGGCATTG
Statistics
Matches: 49, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
27 28 0.57
28 21 0.43
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (27 bp):
TCCATTTCATAAATTGCCACAAAGGCT
Found at i:73212449 original size:80 final size:80
Alignment explanation
Indices: 73212365--73212513 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
73212355 TATGGTAACC
* * * *
73212365 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
73212429 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
73212445 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
73212510 CCGG
66 CCGG
73212514 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:73212455 original size:40 final size:38
Alignment explanation
Indices: 73212406--73212513 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
73212396 ATCACGATTT
*
73212406 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
73212446 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
73212486 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
73212514 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:73213404 original size:17 final size:19
Alignment explanation
Indices: 73213381--73213426 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
73213371 AAGAAGCATG
73213381 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
73213399 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
73213417 AATCATGCTC
1 AATCATGCTC
73213427 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73218792 original size:40 final size:40
Alignment explanation
Indices: 73218747--73218876 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
73218737 CGGAATACAA
73218747 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
73218787 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
73218827 CCGGATGTAGCCACTAGCAC-AGTTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGA-ATGCCTTCGGGTCTTAGC
*
73218867 CTGGATATAA
1 CCGGATATAA
73218877 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.03
40 74 0.97
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73231571 original size:35 final size:35
Alignment explanation
Indices: 73231514--73231606 Score: 91
Period size: 35 Copynumber: 2.7 Consensus size: 35
73231504 TATGGTTTTG
* *
73231514 AGTTTAGGAT-TTAGTTTATAGGGGTTAAGGT-TTAA
1 AGTTTAGGGTATTAGGTT-TAGGGGTTAAGGTATT-A
* ** *
73231549 AGTTTAGGGTATTAGGTTTAGGGTTTCGGGTATTG
1 AGTTTAGGGTATTAGGTTTAGGGGTTAAGGTATTA
*
73231584 GGTTTAGGGTATTAGGTTTAGGG
1 AGTTTAGGGTATTAGGTTTAGGG
73231607 TTTGGTCTAT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
35 41 0.84
36 8 0.16
ACGTcount: A:0.22, C:0.01, G:0.35, T:0.42
Consensus pattern (35 bp):
AGTTTAGGGTATTAGGTTTAGGGGTTAAGGTATTA
Found at i:73231573 original size:7 final size:7
Alignment explanation
Indices: 73231493--73231609 Score: 66
Period size: 7 Copynumber: 17.0 Consensus size: 7
73231483 TGCATGGATC
73231493 AGGGTTT
1 AGGGTTT
73231500 AGGG--T
1 AGGGTTT
*
73231505 ATGGTTT
1 AGGGTTT
* *
73231512 TGAGTTT
1 AGGGTTT
*
73231519 AGGATTT
1 AGGGTTT
*
73231526 A-GTTTAT
1 AGGGTT-T
*
73231533 AGGGGTT
1 AGGGTTT
*
73231540 AAGGTTT
1 AGGGTTT
**
73231547 AAAGTTT
1 AGGGTTT
73231554 AGGGTATT
1 AGGGT-TT
73231562 A-GGTTT
1 AGGGTTT
73231568 AGGGTTT
1 AGGGTTT
*
73231575 CGGGTATT
1 AGGGT-TT
73231583 -GGGTTT
1 AGGGTTT
73231589 AGGGTATT
1 AGGGT-TT
73231597 A-GGTTT
1 AGGGTTT
73231603 AGGGTTT
1 AGGGTTT
73231610 GGTCTATTGG
Statistics
Matches: 84, Mismatches: 16, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
5 4 0.05
6 11 0.13
7 59 0.70
8 10 0.12
ACGTcount: A:0.20, C:0.01, G:0.36, T:0.44
Consensus pattern (7 bp):
AGGGTTT
Found at i:73231590 original size:21 final size:21
Alignment explanation
Indices: 73231541--73231599 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
73231531 ATAGGGGTTA
**
73231541 AGGTTTAAAGTTTAGGGTATT
1 AGGTTTAGGGTTTAGGGTATT
*
73231562 AGGTTTAGGGTTTCGGGTATT
1 AGGTTTAGGGTTTAGGGTATT
*
73231583 GGGTTTAGGGTATTAGG
1 AGGTTTAGGGT-TTAGG
73231600 TTTAGGGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 28 0.88
22 4 0.12
ACGTcount: A:0.20, C:0.02, G:0.37, T:0.41
Consensus pattern (21 bp):
AGGTTTAGGGTTTAGGGTATT
Found at i:73231607 original size:35 final size:34
Alignment explanation
Indices: 73231550--73231626 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 34
73231540 AAGGTTTAAA
*
73231550 GTTTAGGGTATTAGGTTTAGGGTTTCGG-GTATTGG
1 GTTTAGGGTATTAGGTTTAGGGTTT-GGTCTATT-G
73231585 GTTTAGGGTATTAGGTTTAGGGTTTGGTCTATTG
1 GTTTAGGGTATTAGGTTTAGGGTTTGGTCTATTG
73231619 GTTTAGGG
1 GTTTAGGG
73231627 CTTAATTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
34 11 0.28
35 29 0.73
ACGTcount: A:0.14, C:0.03, G:0.39, T:0.44
Consensus pattern (34 bp):
GTTTAGGGTATTAGGTTTAGGGTTTGGTCTATTG
Found at i:73232021 original size:123 final size:122
Alignment explanation
Indices: 73231824--73232105 Score: 361
Period size: 123 Copynumber: 2.3 Consensus size: 122
73231814 AAAATTTCGC
* * * * *
73231824 AAAAA-ATGATAAATTGAATGAAAATGACGTT-GTTTTAGTTGGTGGGTAGTGGAGTTAGTGGCG
1 AAAAATATGAGAAATTGAATGGAAACGGC-TTCGTTTTAGTTGGTGGGTAGTGGAATTAGTGGCG
* * * *
73231887 CTAGGCAATAAACGCCGCAATAGCTCAGAATTAGAGGTGCTTACTAGAAAACGCCGCT
65 CTAGGCAATAAACGCAGCAATAGATCAGAATTAGAGGAGCTTACTAGAAAACGCCACT
73231945 AAAAATATGAGAAATTGAATGGAAACGGCTTCGTTTTAGTTGGTGGGGTAGTGGAATTAGTGGCG
1 AAAAATATGAGAAATTGAATGGAAACGGCTTCGTTTTAGTTGGT-GGGTAGTGGAATTAGTGGCG
* * * * * * *
73232010 TTATGTAATAAATGCAGCAATAGATCAGCATTAGCGGAGCTTATTAGAAAACGCCACT
65 CTAGGCAATAAACGCAGCAATAGATCAGAATTAGAGGAGCTTACTAGAAAACGCCACT
* * *
73232068 AAAAATATGAGAAGTTGAATGGAAACAGCGTCGTTTTA
1 AAAAATATGAGAAATTGAATGGAAACGGCTTCGTTTTA
73232106 TGTGGCTCGG
Statistics
Matches: 139, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
121 7 0.05
122 31 0.22
123 101 0.73
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.27
Consensus pattern (122 bp):
AAAAATATGAGAAATTGAATGGAAACGGCTTCGTTTTAGTTGGTGGGTAGTGGAATTAGTGGCGC
TAGGCAATAAACGCAGCAATAGATCAGAATTAGAGGAGCTTACTAGAAAACGCCACT
Found at i:73232175 original size:123 final size:122
Alignment explanation
Indices: 73231824--73232177 Score: 308
Period size: 123 Copynumber: 2.9 Consensus size: 122
73231814 AAAATTTCGC
* * * *
73231824 AAAAA-ATGATAAATTGAAT-GAAA-ATGACGTTGTTTTAGTTGGT-GGGTAGTGGAGTTAGTGG
1 AAAAATATGAGAAATTGAATGGAAACA-G-CGTCGTTTTAGTTGGTGGGGTAG-GGAATTAGCGG
* * * * * ** * * * *
73231885 CGCTAGGCAATAAACGCCGCAATAGCTCAGAATTAGAGGTGCTTACTAGAAAACGCCGCT
63 CGCTATGTAAGAAACGCAGCAAAAAATCAGCATTAGCGGTGCTTATTAGAAAACGCCACT
* * *
73231945 AAAAATATGAGAAATTGAATGGAAACGGCTTCGTTTTAGTTGGTGGGGTAGTGGAATTAGTGGCG
1 AAAAATATGAGAAATTGAATGGAAACAGCGTCGTTTTAGTTGGTGGGGTAG-GGAATTAGCGGCG
* * * * * *
73232010 TTATGTAATAAATGCAGCAATAGATCAGCATTAGCGGAGCTTATTAGAAAACGCCACT
65 CTATGTAAGAAACGCAGCAAAAAATCAGCATTAGCGGTGCTTATTAGAAAACGCCACT
* **
73232068 AAAAATATGAGAAGTTGAATGGAAACAGCGTCGTTTTA-TGTGGCTCGGTTTA-GGAATTAGCGG
1 AAAAATATGAGAAATTGAATGGAAACAGCGTCGTTTTAGT-TGG-T-GGGGTAGGGAATTAGCGG
** * *
73232131 CGCTATGTTGGAAACGCTGCAAAAAATTAGCATTA-CTGGTGCTTATT
63 CGCTATGTAAGAAACGCAGCAAAAAATCAGCATTAGC-GGTGCTTATT
73232178 CAAAAATGCC
Statistics
Matches: 193, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
121 5 0.03
122 29 0.15
123 154 0.80
124 1 0.01
125 4 0.02
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (122 bp):
AAAAATATGAGAAATTGAATGGAAACAGCGTCGTTTTAGTTGGTGGGGTAGGGAATTAGCGGCGC
TATGTAAGAAACGCAGCAAAAAATCAGCATTAGCGGTGCTTATTAGAAAACGCCACT
Found at i:73233493 original size:5 final size:5
Alignment explanation
Indices: 73233483--73233509 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
73233473 ATTTTGTCCT
73233483 TATAC TATAC TATAC TATAC TATAC TA
1 TATAC TATAC TATAC TATAC TATAC TA
73233510 GACTGCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAC
Found at i:73235065 original size:37 final size:36
Alignment explanation
Indices: 73235019--73235157 Score: 109
Period size: 37 Copynumber: 3.5 Consensus size: 36
73235009 ATTTTAAATA
73235019 TTTTA-TTTTATTTTATTTTAATCACTAAAAATATT
1 TTTTACTTTTATTTTATTTTAATCACTAAAAATATT
*
73235054 TTTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATT
1 TTT-TACTTTTATTTTA-TTTT-AATCA-CTAA--AAA-T--ATT
* * *
73235099 GTATTTAAAGTTTTATTTTAATTTAATCACGAAAAATATTT
1 -T-TTT--ACTTTTATTTTATTTTAATCACTAAAAATA-TT
73235140 TTTTACTTTTATTTTATT
1 TTTTACTTTTATTTTATT
73235158 GGTAAATTAC
Statistics
Matches: 82, Mismatches: 7, Indels: 28
0.70 0.06 0.24
Matches are distributed among these distances:
35 3 0.04
36 2 0.02
37 22 0.27
38 4 0.05
39 7 0.09
40 6 0.07
41 2 0.02
42 4 0.05
43 4 0.05
45 6 0.07
46 6 0.07
47 5 0.06
48 11 0.13
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.58
Consensus pattern (36 bp):
TTTTACTTTTATTTTATTTTAATCACTAAAAATATT
Found at i:73235074 original size:104 final size:105
Alignment explanation
Indices: 73234850--73235119 Score: 445
Period size: 104 Copynumber: 2.6 Consensus size: 105
73234840 TTTTTAAATA
*
73234850 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAA-TAGTATTTAAAGTTTTATTTTGAATGTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTA-TATTTAAAGTTTTATTTT-AA-GAT
73234914 ATTTTATTTTATTTTATTTTAATAACGAAAAATATTTGTCTAC
63 ATTTTATTTTATTTTATTTTAATAACGAAAAATATTTGTCTAC
*
73234957 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATTTTTAAAGTTTTATTTTAA-ATATT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAGATATT
* * *
73235021 TTATTTTATTTTATTTTAATCACTAAAAATATTTTTCTAC
66 TTATTTTATTTTATTTTAATAACGAAAAATATTTGTCTAC
*
73235061 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAA
73235120 TTTAATCACG
Statistics
Matches: 155, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
104 98 0.63
106 2 0.01
107 53 0.34
108 2 0.01
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAGATATT
TTATTTTATTTTATTTTAATAACGAAAAATATTTGTCTAC
Found at i:73235115 original size:85 final size:85
Alignment explanation
Indices: 73235024--73235189 Score: 287
Period size: 85 Copynumber: 2.0 Consensus size: 85
73235014 AAATATTTTA
* * **
73235024 TTTTATTTTATTTTAATCACTAAAAATATTTTTCTACTTTTATTTTATTTTTAAATTACCTAATT
1 TTTTATTTTAATTTAATCACGAAAAATATTTTTCTACTTTTATTTTATTGGTAAATTACCTAATT
73235089 AAATTAAATTGTATTTAAAG
66 AAATTAAATTGTATTTAAAG
*
73235109 TTTTATTTTAATTTAATCACGAAAAATATTTTTTTACTTTTATTTTATTGGTAAATTACCTAATT
1 TTTTATTTTAATTTAATCACGAAAAATATTTTTCTACTTTTATTTTATTGGTAAATTACCTAATT
73235174 AAATTAAATTGTATTT
66 AAATTAAATTGTATTT
73235190 TTAATTATTT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 76 1.00
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.55
Consensus pattern (85 bp):
TTTTATTTTAATTTAATCACGAAAAATATTTTTCTACTTTTATTTTATTGGTAAATTACCTAATT
AAATTAAATTGTATTTAAAG
Found at i:73235155 original size:42 final size:42
Alignment explanation
Indices: 73235019--73235157 Score: 117
Period size: 42 Copynumber: 3.3 Consensus size: 42
73235009 ATTTTAAATA
*
73235019 TTTTATTTTATTTTATTTTAATCACTAAAAATATTTTTCTAC
1 TTTTATTTTATTTTAATTTAATCACTAAAAATATTTTTCTAC
* ** *
73235061 TTTTATTTTATTTTTAAATT-A-C-CTAATTAAAT-TAAATTGTA-
1 TTTTATTTTA-TTTTAATTTAATCACTAA--AAATAT-TTTTCTAC
* * *
73235102 TTTAAAGTTTTATTTTAATTTAATCACGAAAAATATTTTTTTAC
1 TTT-TA-TTTTATTTTAATTTAATCACTAAAAATATTTTTCTAC
73235146 TTTTATTTTATT
1 TTTTATTTTATT
73235158 GGTAAATTAC
Statistics
Matches: 74, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
40 4 0.05
41 5 0.07
42 35 0.47
43 22 0.30
44 5 0.07
45 3 0.04
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.58
Consensus pattern (42 bp):
TTTTATTTTATTTTAATTTAATCACTAAAAATATTTTTCTAC
Found at i:73235487 original size:18 final size:18
Alignment explanation
Indices: 73235455--73235573 Score: 78
Period size: 18 Copynumber: 7.1 Consensus size: 18
73235445 CAACATAAAT
*
73235455 ATATATCATATCTTACATA
1 ATATA-CATAACTTACATA
*
73235474 ATTTACATAACTTACA-A
1 ATATACATAACTTACATA
*
73235491 A-ATACATAA---ATAT-
1 ATATACATAACTTACATA
*
73235504 ATAT-CATATCTTACATA
1 ATATACATAACTTACATA
*
73235521 ATTTACATAACTTACAT-
1 ATATACATAACTTACATA
* * *
73235538 A-ATACATAAATATATATC
1 ATATACATAACT-TACATA
73235556 ATAT-CATAACTTACATA
1 ATATACATAACTTACATA
73235573 A
1 A
73235574 CTTAATTATA
Statistics
Matches: 76, Mismatches: 14, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
13 7 0.09
14 2 0.03
16 18 0.24
17 15 0.20
18 28 0.37
19 6 0.08
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (18 bp):
ATATACATAACTTACATA
Found at i:73235516 original size:47 final size:47
Alignment explanation
Indices: 73235447--73235560 Score: 219
Period size: 47 Copynumber: 2.4 Consensus size: 47
73235437 AATCCCATCA
73235447 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
*
73235494 ACATAAATATATATCATATCTTACATAATTTACATAACTTACATAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
73235541 ACATAAATATATATCATATC
1 ACATAAATATATATCATATC
73235561 ATAACTTACA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (47 bp):
ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
Found at i:73235539 original size:9 final size:9
Alignment explanation
Indices: 73235461--73235577 Score: 64
Period size: 9 Copynumber: 13.0 Consensus size: 9
73235451 AAATATATAT
*
73235461 CATATCTTA
1 CATAACTTA
*
73235470 CATAATTTA
1 CATAACTTA
73235479 CATAACTTA
1 CATAACTTA
*
73235488 CA-AA-ATA
1 CATAACTTA
*
73235495 CATAAATATATA
1 CAT-AA-CT-TA
*
73235507 TCATATCTTA
1 -CATAACTTA
*
73235517 CATAATTTA
1 CATAACTTA
73235526 CATAACTTA
1 CATAACTTA
73235535 CATAA--TA
1 CATAACTTA
*
73235542 CATAA-ATA
1 CATAACTTA
* * *
73235550 TATATCATA
1 CATAACTTA
73235559 TCATAACTTA
1 -CATAACTTA
73235569 CATAACTTA
1 CATAACTTA
73235578 ATTATACTTA
Statistics
Matches: 84, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
7 11 0.13
8 7 0.08
9 51 0.61
10 8 0.10
11 1 0.01
12 3 0.04
13 3 0.04
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:73241447 original size:19 final size:17
Alignment explanation
Indices: 73241398--73241448 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
73241388 AAATAGATAT
73241398 TTATTTTAATATTA-AA
1 TTATTTTAATATTATAA
*
73241414 TTATTTTTATAATTATTAA
1 TTATTTTAAT-ATTA-TAA
73241433 TTATTATTAATATTAT
1 TTATT-TTAATATTAT
73241449 CTTATATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 9 0.31
17 4 0.14
18 1 0.03
19 11 0.38
20 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTTTAATATTATAA
Found at i:73242323 original size:27 final size:27
Alignment explanation
Indices: 73242293--73242357 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
73242283 ACCCCTGGTT
*
73242293 TGTAAATTTACTGAAATACCCTCGACC
1 TGTAAAATTACTGAAATACCCTCGACC
* *
73242320 TGTAAAATTATTGAAATACCCTCGACT
1 TGTAAAATTACTGAAATACCCTCGACC
73242347 TGTAAAATTAC
1 TGTAAAATTAC
73242358 CAAAGTACCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTCGACC
Found at i:73242366 original size:27 final size:26
Alignment explanation
Indices: 73242270--73242367 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 26
73242260 TTAGTTTACC
**
73242270 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACC-AAATACCCTC-GACTTGTA
* * *
73242297 AATTTACTGAAATACCCTCGACCTGTA
1 AAATTAC-CAAATACCCTCGACTTGTA
**
73242324 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTA-CCAAATACCCTCGACTTGTA
73242351 AAATTACCAAAGTACCC
1 AAATTACCAAA-TACCC
73242368 CTAATTTACA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.05
27 53 0.93
28 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGACTTGTA
Found at i:73242436 original size:27 final size:27
Alignment explanation
Indices: 73242406--73242850 Score: 512
Period size: 27 Copynumber: 16.2 Consensus size: 27
73242396 CAATTTACAA
* *
73242406 AATTACCGAAATAACCCTGTAGGGAAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73242433 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
73242460 AAATACTGAAATACCGAAATACCCCTGTAGGGTAG
1 --A-A-T----TACCGAAATACCCCTGTAGGGTAG
** * *
73242495 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73242522 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73242549 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
73242576 AATTACTAAAAAACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
73242603 AATTATCGAAATATCCTTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73242630 AAATACCGAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
73242657 AATAACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73242684 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73242711 AAATACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
73242738 GATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73242765 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
73242792 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
73242819 AATTACTGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
73242846 AATTA
1 AATTA
73242851 TCGAGACACC
Statistics
Matches: 349, Mismatches: 61, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
27 321 0.92
29 1 0.00
30 1 0.00
31 2 0.01
32 1 0.00
33 1 0.00
35 22 0.06
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:73242482 original size:35 final size:35
Alignment explanation
Indices: 73242436--73242509 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 35
73242426 AGGGAAGAAT
* *
73242436 TACCGAAATACCCTTATAGGGTAGAAATACTGAAA
1 TACCGAAATACCCCTATAGGGTAGAAATACTAAAA
* *
73242471 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAA
1 TACCGAAATACCCCTATAGGGTAGAAATACTAAAA
73242506 TACC
1 TACC
73242510 CCTATAAGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (35 bp):
TACCGAAATACCCCTATAGGGTAGAAATACTAAAA
Found at i:73242602 original size:81 final size:81
Alignment explanation
Indices: 73242467--73242865 Score: 627
Period size: 81 Copynumber: 4.9 Consensus size: 81
73242457 TAGAAATACT
* *
73242467 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCGAA
1 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
73242532 ATACCCTTGTAGGGTA
66 ATACCCTTGTAGGGTA
* * *
73242548 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAAAACCCCTATAGGGTAGAATTATCGAA
1 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
* *
73242613 ATATCCTTGTTGGGTA
66 ATACCCTTGTAGGGTA
* * *
73242629 GAAATACCGAAATACCCCTGTAGAGTAGAATAACTAAAATACCCCTGTAGGGTAGAAATACCGAA
1 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
73242694 ATACCCTTGTAGGGTA
66 ATACCCTTGTAGGGTA
* * *
73242710 GAAATACCGAAATACCCCTGTAAGGTAGGATTACTGAAATACCCCTGTAGGGTAGAATTACCGAA
1 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
73242775 ATACCCTTGTAGGGTA
66 ATACCCTTGTAGGGTA
* * * * *
73242791 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAAAATTATCGAG
1 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
*
73242856 ACACCCTTGT
66 ATACCCTTGT
73242866 GGGGCTAGGG
Statistics
Matches: 292, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 292 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
GAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
ATACCCTTGTAGGGTA
Found at i:73243284 original size:6 final size:6
Alignment explanation
Indices: 73243275--73243467 Score: 101
Period size: 6 Copynumber: 31.3 Consensus size: 6
73243265 TTGCATTCAC
* * * *
73243275 ATTCTG ATTCTA ATTCTG -TTACCTG ATACCG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* ** *
73243325 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ACACTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * *
73243374 ATTCTG -TTACCTA ATTCTA ATTCTA ATTTTG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
73243424 ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
73243468 AATGTTTCTA
Statistics
Matches: 144, Mismatches: 26, Indels: 34
0.71 0.13 0.17
Matches are distributed among these distances:
5 10 0.07
6 114 0.79
7 14 0.10
8 6 0.04
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:73243328 original size:19 final size:19
Alignment explanation
Indices: 73243306--73243397 Score: 80
Period size: 19 Copynumber: 4.6 Consensus size: 19
73243296 CCTGATACCG
73243306 ATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGTTACCTA
*
73243325 ATTCTGATTCTGGTT--CTG
1 ATTCTGATTCT-GTTACCTA
73243343 ATTCTGATTCTGTTACCTGACA
1 ATTCTGATTCTGTTACCT---A
*
73243365 CTGATTCTAATTCTGTTACCTA
1 ---ATTCTGATTCTGTTACCTA
*
73243387 ATTCTAATTCT
1 ATTCTGATTCT
73243398 AATTTTGATT
Statistics
Matches: 61, Mismatches: 3, Indels: 18
0.74 0.04 0.22
Matches are distributed among these distances:
17 3 0.05
18 13 0.21
19 24 0.39
20 3 0.05
22 1 0.02
25 17 0.28
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.47
Consensus pattern (19 bp):
ATTCTGATTCTGTTACCTA
Found at i:73243333 original size:25 final size:25
Alignment explanation
Indices: 73243275--73243342 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
73243265 TTGCATTCAC
* *
73243275 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
* *
73243300 ATACCGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
73243325 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
73243343 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:73243378 original size:62 final size:62
Alignment explanation
Indices: 73243276--73243467 Score: 244
Period size: 62 Copynumber: 3.1 Consensus size: 62
73243266 TGCATTCACA
* * *
73243276 TTCTGATTCTAATTCTGTTACCTGATACCGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTAG
* * * *
73243338 TTCTGATTCTGATTCTGTTACCTGACACTGATTCTAATTCTGTTACCTAATTCTAATTCTAA
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTAG
* * * * * *
73243400 TTTTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTGATT--CTCATTTTGATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG-TTACCTAATTCTGATTCTAG
73243461 TTCTGAT
1 TTCTGAT
73243468 AATGTTTCTA
Statistics
Matches: 111, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
61 18 0.16
62 91 0.82
63 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTAG
Found at i:73243379 original size:37 final size:37
Alignment explanation
Indices: 73243305--73243379 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
73243295 ACCTGATACC
** **
73243305 GATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCT
1 GATTCTGATTCTGTTACCTAACACTGATTCTAATTCT
*
73243342 GATTCTGATTCTGTTACCTGACACTGATTCTAATTCT
1 GATTCTGATTCTGTTACCTAACACTGATTCTAATTCT
73243379 G
1 G
73243380 TTACCTAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.45
Consensus pattern (37 bp):
GATTCTGATTCTGTTACCTAACACTGATTCTAATTCT
Found at i:73243396 original size:25 final size:25
Alignment explanation
Indices: 73243338--73243401 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
73243328 CTGATTCTGG
* *
73243338 TTCTGATTCTGATTCTGTTACCTGA
1 TTCTGATTCTAATTCTGTTACCTAA
**
73243363 CACTGATTCTAATTCTGTTACCTAA
1 TTCTGATTCTAATTCTGTTACCTAA
*
73243388 TTCTAATTCTAATT
1 TTCTGATTCTAATT
73243402 TTGATTTTGA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.23, C:0.20, G:0.09, T:0.47
Consensus pattern (25 bp):
TTCTGATTCTAATTCTGTTACCTAA
Found at i:73243407 original size:37 final size:37
Alignment explanation
Indices: 73243365--73243446 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
73243355 TTACCTGACA
*
73243365 CTGATTCTAATTCTGTTACCTAATTCTAATTCTAATT
1 CTGATTCTAATTCTGTCACCTAATTCTAATTCTAATT
* * * * * *
73243402 TTGATTTTGATTCTGTCACCTGATTCTGATTCTGATT
1 CTGATTCTAATTCTGTCACCTAATTCTAATTCTAATT
73243439 CTGATTCT
1 CTGATTCT
73243447 CATTTTGATT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.50
Consensus pattern (37 bp):
CTGATTCTAATTCTGTCACCTAATTCTAATTCTAATT
Found at i:73243476 original size:18 final size:17
Alignment explanation
Indices: 73243455--73243488 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
73243445 CTCATTTTGA
*
73243455 TTCTAGTTCTGATAATGT
1 TTCTAATTCTG-TAATGT
73243473 TTCTAATTCTGTAATG
1 TTCTAATTCTGTAATG
73243489 GGCTAAGGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.50
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:73247214 original size:39 final size:39
Alignment explanation
Indices: 73247063--73247256 Score: 253
Period size: 40 Copynumber: 4.9 Consensus size: 39
73247053 TGTTCAAACA
* * * * * *
73247063 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
*
73247103 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
* * * *
73247143 CCTTCGGAGTTTATCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGG-GCTTAGCCCGGATATCACAACTCGCACAATTG
73247183 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
*
73247222 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
73247257 TTCATACACA
Statistics
Matches: 137, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 62 0.45
40 74 0.54
41 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
Found at i:73255382 original size:40 final size:39
Alignment explanation
Indices: 73255324--73255516 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
73255314 CGTTCAAACA
* * ** * *
73255324 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73255364 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73255404 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73255443 CCTTCGGGCTTAGCCCGGATATCACAACTTGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73255482 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
73255517 TTCATACACA
Statistics
Matches: 137, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73255435 original size:39 final size:39
Alignment explanation
Indices: 73255354--73255516 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
73255344 TATGGTAACC
* *
73255354 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73255394 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73255433 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
73255472 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73255511 CGCACA
1 CGCACA
73255517 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73257278 original size:40 final size:40
Alignment explanation
Indices: 73257223--73257350 Score: 195
Period size: 40 Copynumber: 3.2 Consensus size: 40
73257213 GGCTGTCATA
*
73257223 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
*
73257263 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
* * *
73257303 ATATCTGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CT
73257343 ATATCCGG
1 ATATCCGG
73257351 TTAAATTCCG
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.02
40 79 0.98
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT
Found at i:73265380 original size:40 final size:40
Alignment explanation
Indices: 73265325--73265541 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
73265315 TGGATGATAA
* * *
73265325 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
73265365 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73265405 -CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73265444 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
73265484 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
73265524 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73265542 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
39 54 0.33
40 108 0.67
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73265457 original size:79 final size:80
Alignment explanation
Indices: 73265325--73265541 Score: 291
Period size: 79 Copynumber: 2.7 Consensus size: 80
73265315 TGGATGATAA
* *
73265325 CCGGGCTAAGTCCCGAAGGCATTTGCGCT-AGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAG-TGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATT
*
73265388 TGTGCGAGTTACTATAT
64 GGTGCGAGTTACTATAT
*
73265405 -CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
73265469 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * * * *
73265484 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
73265542 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
78 2 0.02
79 88 0.71
80 34 0.27
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTATAT
Found at i:73265537 original size:119 final size:119
Alignment explanation
Indices: 73265325--73265541 Score: 312
Period size: 119 Copynumber: 1.8 Consensus size: 119
73265315 TGGATGATAA
* * *
73265325 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTCG
* * *
73265390 TGCGAGTTACTATATCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
66 AGCGAGTTACTATATCCGGCTAAATCCCGAAGGCATTTGTGTGAGTTACTATAT
* * *
73265444 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-TATCCGGGCTATGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTC
*
73265508 GAGCGAG-TAGCTATATCCGGTTAAATCCCGAAGG
65 GAGCGAGTTA-CTATATCCGGCTAAATCCCGAAGG
73265542 TACTTGGCTT
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
118 3 0.03
119 83 0.97
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTCG
AGCGAGTTACTATATCCGGCTAAATCCCGAAGGCATTTGTGTGAGTTACTATAT
Found at i:73268266 original size:16 final size:17
Alignment explanation
Indices: 73268242--73268275 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
73268232 GTATTGATGT
*
73268242 TTGAGTTGAAT-GAGAA
1 TTGAATTGAATGGAGAA
73268258 TTGAATTGAATGGAGAA
1 TTGAATTGAATGGAGAA
73268275 T
1 T
73268276 GTGTATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.32
Consensus pattern (17 bp):
TTGAATTGAATGGAGAA
Found at i:73269627 original size:21 final size:21
Alignment explanation
Indices: 73269585--73269628 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
73269575 TGGCAACAAT
*
73269585 GAGAGAGGCAACGGTAGCAGC
1 GAGAGAGGCAACGGCAGCAGC
*
73269606 GAGAGAGGCAGA-GGCAGTAGC
1 GAGAGAGGCA-ACGGCAGCAGC
73269627 GA
1 GA
73269629 TGGCAGCAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.34, C:0.16, G:0.45, T:0.05
Consensus pattern (21 bp):
GAGAGAGGCAACGGCAGCAGC
Found at i:73285285 original size:40 final size:39
Alignment explanation
Indices: 73285241--73285422 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
73285231 GTTCAAAACA
* * ** * *
73285241 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73285281 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73285321 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73285360 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73285399 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
73285423 CAATTCACAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73285428 original size:39 final size:39
Alignment explanation
Indices: 73285271--73285425 Score: 256
Period size: 39 Copynumber: 3.9 Consensus size: 39
73285261 TATGGTAACC
* *
73285271 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73285311 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73285350 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73285389 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
73285426 TTCACACATT
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 91 0.84
40 17 0.16
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73292137 original size:40 final size:40
Alignment explanation
Indices: 73292013--73292139 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 40
73292003 GCTGGAAATT
* * * * **
73292013 TATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTA
* * ** *
73292053 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTA
73292093 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATTA
73292133 TATCCGG
1 TATCCGG
73292140 TTATATTCCG
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTA
Found at i:73293813 original size:40 final size:40
Alignment explanation
Indices: 73293745--73293950 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
73293735 GGGATTTAGT
** * *
73293745 CGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
* * *
73293784 CGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
* * *
73293824 CGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCT
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
* * * *
73293864 CGGATATAG-CAACTCGCACAAATGCCTTCGGATCTCAGTC
1 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCC
* * *
73293904 CGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
73293944 CGGATAT
1 CGGATAT
73293951 CATTCGAATA
Statistics
Matches: 137, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 15 0.11
40 121 0.88
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
Found at i:73297534 original size:66 final size:68
Alignment explanation
Indices: 73297405--73297534 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 68
73297395 GGGATGTATC
* *
73297405 CCATGTACACAAGAGAGCTACGTGAGAGATAAATGTGGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTACACAAGAGAGCTAC--G-GAGATAAATGCGGCTAGGTCGCATGAGTGATACCAAGTGA
73297470 AGGACA
63 AGGACA
* * *
73297476 CCATGTAGACAAGAGAGCTAC-GAGATAAAT-CGGCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTACACAAGAGAGCTACGGAGATAAATGCGGCTAGGTCGCATGAGTGATACCAAGTG
73297535 TTCACCAAGT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
66 25 0.46
67 9 0.17
71 20 0.37
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (68 bp):
CCATGTACACAAGAGAGCTACGGAGATAAATGCGGCTAGGTCGCATGAGTGATACCAAGTGAAGG
ACA
Found at i:73304223 original size:39 final size:38
Alignment explanation
Indices: 73304180--73304303 Score: 142
Period size: 39 Copynumber: 3.2 Consensus size: 38
73304170 AGATAGGCTA
* * *
73304180 AATAATCACCGGTACACAGCCTGTTAGGCACACAGCCC
1 AATAATCACCAGTACACAGCCTGCTAGGCACATAGCCC
* * *
73304218 TAATAATCACCAGTACATAGCCTACTAGGCATATAGCCC
1 -AATAATCACCAGTACACAGCCTGCTAGGCACATAGCCC
* *
73304257 GAATAATCA-CAGCATACAGCCTGCTAGGCACATAGCCC
1 -AATAATCACCAGTACACAGCCTGCTAGGCACATAGCCC
*
73304295 AAAAATCAC
1 AATAATCAC
73304304 TATATTTCTA
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
37 7 0.10
38 24 0.34
39 40 0.56
ACGTcount: A:0.36, C:0.31, G:0.15, T:0.18
Consensus pattern (38 bp):
AATAATCACCAGTACACAGCCTGCTAGGCACATAGCCC
Found at i:73308704 original size:29 final size:29
Alignment explanation
Indices: 73308671--73308801 Score: 113
Period size: 29 Copynumber: 4.5 Consensus size: 29
73308661 GTGACGAGAT
73308671 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
73308700 TGGCACTAAGTGTGCATGCTGGAAATTTA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
73308729 CGGCACTGGGTGTGCGA-GCTTGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
73308758 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
73308787 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
73308802 GAAATCGAGT
Statistics
Matches: 81, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
28 2 0.02
29 78 0.96
30 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:73317734 original size:15 final size:15
Alignment explanation
Indices: 73317678--73317740 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 15
73317668 TATAGTTTCT
*
73317678 TATAGTCTCACAATC
1 TATAGTTTCACAATC
73317693 TATAGTTTTCACAATTC
1 TATAG-TTTCACAA-TC
**
73317710 TATACCTTCA-AAGTC
1 TATAGTTTCACAA-TC
73317725 TATAGTTTCAC-ATC
1 TATAGTTTCACAATC
73317739 TA
1 TA
73317741 ACAACACTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
14 4 0.10
15 18 0.46
16 11 0.28
17 6 0.15
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (15 bp):
TATAGTTTCACAATC
Found at i:73322573 original size:26 final size:26
Alignment explanation
Indices: 73322544--73322606 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
73322534 CTAAAGAAGT
* * *
73322544 GCCTTTGTGGCAATTTTCGTTAGGTA
1 GCCTTTGTGGCAATTTTCATAAGGAA
* *
73322570 GCCTTTGTGGTAGTTTTCATAAGGAA
1 GCCTTTGTGGCAATTTTCATAAGGAA
73322596 GCCTTTGTGGC
1 GCCTTTGTGGC
73322607 TATCTTTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.16, C:0.16, G:0.29, T:0.40
Consensus pattern (26 bp):
GCCTTTGTGGCAATTTTCATAAGGAA
Found at i:73322629 original size:29 final size:29
Alignment explanation
Indices: 73322590--73322692 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
73322580 TAGTTTTCAT
* *
73322590 AAGGAAGCCTTTGTGGCTATCTTTGTTAG
1 AAGGAAGCCTTTGTGGCTATCTCTATTAG
* *
73322619 AAGGAAGCCTTTATGGCTATATCTATTAG
1 AAGGAAGCCTTTGTGGCTATCTCTATTAG
* * *
73322648 AAGGAAGCC-TTGTGGCAATCTGTATTAA
1 AAGGAAGCCTTTGTGGCTATCTCTATTAG
* *
73322676 AAGGATGCATTTGTGGC
1 AAGGAAGCCTTTGTGGC
73322693 AAGACTCTAG
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
28 21 0.34
29 41 0.66
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (29 bp):
AAGGAAGCCTTTGTGGCTATCTCTATTAG
Found at i:73327019 original size:124 final size:124
Alignment explanation
Indices: 73326797--73327021 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
73326787 GAATTATGTT
* * * * * * * *
73326797 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
73326862 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
73326921 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
73326986 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTAGAAATTATAT
73327022 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (124 bp):
AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:73327143 original size:40 final size:40
Alignment explanation
Indices: 73327016--73327145 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
73327006 ATGCTGGAAA
* *
73327016 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
73327056 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
73327096 TTCTATCCGGGCTAAGACCCGAAGGCATTCGAGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73327136 TTATATCCGG
1 TTATATCCGG
73327146 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73338663 original size:124 final size:124
Alignment explanation
Indices: 73338441--73338665 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
73338431 GAATTATGTG
* * * * * * * *
73338441 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
73338506 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
73338565 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
73338630 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTAGAAATTATAT
73338666 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (124 bp):
AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:73338787 original size:40 final size:40
Alignment explanation
Indices: 73338660--73338789 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
73338650 ATGCTGGAAA
* *
73338660 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
73338700 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73338740 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73338780 TTATATCCGG
1 TTATATCCGG
73338790 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73343573 original size:20 final size:21
Alignment explanation
Indices: 73343538--73343581 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
73343528 ACCCGGAGTC
*
73343538 ACTAAAGGACAATTTTTGCAA
1 ACTAAAGGACAATTTTAGCAA
*
73343559 ACTAAA-GACAGTTTTAGCAA
1 ACTAAAGGACAATTTTAGCAA
73343579 ACT
1 ACT
73343582 TTATCAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (21 bp):
ACTAAAGGACAATTTTAGCAA
Found at i:73344857 original size:12 final size:12
Alignment explanation
Indices: 73344841--73344870 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
73344831 ATTTGGGATT
73344841 AGGTGGGGGTGG
1 AGGTGGGGGTGG
*
73344853 GGGTGGGGGTGG
1 AGGTGGGGGTGG
73344865 AGGTGG
1 AGGTGG
73344871 AGGTTATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.77, T:0.17
Consensus pattern (12 bp):
AGGTGGGGGTGG
Found at i:73350439 original size:47 final size:47
Alignment explanation
Indices: 73350217--73350528 Score: 248
Period size: 47 Copynumber: 6.6 Consensus size: 47
73350207 TTGCCCATGC
*
73350217 CATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATCGAGGGCGATGG
1 CATGTCCCAGACAT-GTCTTACACTGGC-ACTCATCATCGAGGCCGAT-G
* * * * *
73350266 CATGTCCCAGACATGGTCTTATACTAGCTCTCATATATACGTA--CTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CAT-CG-AGGCCGATG
* * * *
73350315 CATGTCCCGGACATGTCTTACACTAGCA--CAAC-TCTTA-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCACTCATCATC-GAGGCCGATG
* ** *
73350359 CATATCCCAGACACATCTTACACTGGCTA-TCATCGTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGC-ACTCATCATCGAGGCCGATG
* * ** *
73350406 CATGTCCCAGAGATGTCTTACACTGGCACTCATC-TCTACACCGCTG
1 CATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAGGCCGATG
* * *
73350452 CCATGTCCCAGACATGGTCTTCCACTGGCACTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCACTCATCATCGAGGCCGATG
*
73350500 CATGTCCCAAACATGTCTTACACTGGCAC
1 CATGTCCCAGACATGTCTTACACTGGCAC
73350529 ACAAGAAATC
Statistics
Matches: 211, Mismatches: 38, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
43 2 0.01
44 28 0.13
45 1 0.00
46 29 0.14
47 63 0.30
48 35 0.17
49 45 0.21
50 5 0.02
51 2 0.01
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAGGCCGATG
Found at i:73350497 original size:141 final size:140
Alignment explanation
Indices: 73350233--73350526 Score: 326
Period size: 141 Copynumber: 2.1 Consensus size: 140
73350223 CCAGACATGG
* * *
73350233 TCTTACACTGGCTATCATCATCGAGGGCGATGGCATGTCCCAGACATGGTCTTATACTAGCTCTC
1 TCTTACACTGGCTATCATCATCGAGGCCGATGGCATGTCCCAGACATGGTCTTACACTAGCACTC
* * * *
73350298 ATATATACGTACTGATGCATGTCCCGGACATGTCTTACACTAGCACAACTCTTAGCCGATGCATA
66 ATATATACG-ACCGATGCATGTCCCAGACATGTCTTACACTAGCACAAATCGTAGCCGATGCATA
*
73350363 TCCCAGACACA
130 TCCCAAACACA
* * *
73350374 TCTTACACTGGCTATCATCGTCGAGGCCGAT-GCATGTCCCAGAGAT-GTCTTACACTGGCACTC
1 TCTTACACTGGCTATCATCATCGAGGCCGATGGCATGTCCCAGACATGGTCTTACACTAGCACTC
* * * * * *
73350437 ATCTCTAC-ACCGCTGCCATGTCCCAGACATGGTCTTCCACTGGCACTCATAAT-GTGGCCGATG
66 ATATATACGACCGATG-CATGTCCCAGACAT-GTCTTACACTAGCA--CA-AATCGTAGCCGATG
* **
73350500 CATGTCCCAAACATG
126 CATATCCCAAACACA
73350515 TCTTACACTGGC
1 TCTTACACTGGC
73350527 ACACAAGAAA
Statistics
Matches: 128, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
137 5 0.04
138 13 0.10
139 32 0.25
140 14 0.11
141 62 0.48
142 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (140 bp):
TCTTACACTGGCTATCATCATCGAGGCCGATGGCATGTCCCAGACATGGTCTTACACTAGCACTC
ATATATACGACCGATGCATGTCCCAGACATGTCTTACACTAGCACAAATCGTAGCCGATGCATAT
CCCAAACACA
Found at i:73352262 original size:55 final size:53
Alignment explanation
Indices: 73352144--73352264 Score: 136
Period size: 54 Copynumber: 2.2 Consensus size: 53
73352134 AGGATACCAA
* * *
73352144 GTAAGACCATGCCAAGACATGGCATTGGTAAGTTCCACAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGACATGGCATTGATAACTACCACAAGGCAA-GAAATCAT
* * * *
73352198 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAA-ATATCCCAT
1 GTAAGACCATGCCAAGACATGGCATTGAT-AACTACCACAAGGCAAGAAAT--CAT
73352253 GTAAGACCATGC
1 GTAAGACCATGC
73352265 TAAGGCATCG
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
53 3 0.05
54 27 0.48
55 26 0.46
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGCCAAGACATGGCATTGATAACTACCACAAGGCAAGAAATCAT
Found at i:73367527 original size:70 final size:70
Alignment explanation
Indices: 73367414--73367554 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
73367404 TGAGTTTTAG
*
73367414 TATAGCTTTCCATCTTCAAACTGATGGTCAGTCGGAGAGAGTTATTCAGATACTTGAGGATATGC
1 TATAGCTTTCCATCTTCAAACTGATGGTCAGTCGGAGAGAGTTATTCAAATACTTGAGGATATGC
73367479 TCAGA
66 TCAGA
73367484 TATAGCTTTCCATCTTCAAACTGATGGTCAGTCGGAGAGAGTTATTCAAATACTTGAGGATATGC
1 TATAGCTTTCCATCTTCAAACTGATGGTCAGTCGGAGAGAGTTATTCAAATACTTGAGGATATGC
73367549 TCAGA
66 TCAGA
73367554 T
1 T
73367555 GTTGTGTCTT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (70 bp):
TATAGCTTTCCATCTTCAAACTGATGGTCAGTCGGAGAGAGTTATTCAAATACTTGAGGATATGC
TCAGA
Found at i:73368543 original size:18 final size:18
Alignment explanation
Indices: 73368520--73368557 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
73368510 TAAAGGATTA
73368520 AATTGAAGAGTATAATTG
1 AATTGAAGAGTATAATTG
73368538 AATTGAAGAGTATAATTG
1 AATTGAAGAGTATAATTG
73368556 AA
1 AA
73368558 GTAGAAGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (18 bp):
AATTGAAGAGTATAATTG
Found at i:73369720 original size:53 final size:54
Alignment explanation
Indices: 73369527--73369756 Score: 239
Period size: 53 Copynumber: 4.3 Consensus size: 54
73369517 TTAGGGTTTG
* * * * * *
73369527 AGGATACCAAGTAAGACCATGGCAAGGCATGGCATTGGTAATTTCTACAAGGCA
1 AGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCA
* * * * * * *
73369581 AGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCA
1 AGGATACCACGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCTATAAGGCA
* * * * * *
73369636 AAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCA
1 AGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCA
* * *
73369689 AGGATACCACGTAAGATCAAGTCAAGACATGGCAATGGTGAGTTC-ATAAGGCA
1 AGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCA
73369742 AGGATACCACGTAAG
1 AGGATACCACGTAAG
73369757 TTTAAAAAGG
Statistics
Matches: 148, Mismatches: 27, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
53 69 0.47
54 36 0.24
55 43 0.29
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (54 bp):
AGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCA
Found at i:73372992 original size:40 final size:40
Alignment explanation
Indices: 73372899--73373090 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
73372889 CGGATATACG
* ** *
73372899 ACTCGCTCAAATGCCTTCGGGACGAAGCCC-GATTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
73372939 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
73372979 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * * * *
73373018 TCTCACACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
*
73373058 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
73373091 CATCATTCGA
Statistics
Matches: 120, Mismatches: 27, Indels: 10
0.76 0.17 0.06
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 77 0.64
41 12 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:73373030 original size:79 final size:80
Alignment explanation
Indices: 73372944--73373090 Score: 201
Period size: 79 Copynumber: 1.9 Consensus size: 80
73372934 TAGTGACTCG
* * *
73372944 CACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAATGCCTTCGGG-CTTAGC
1 CACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGC
73373006 CCGGATTTATTATCTCA
64 CCGGATTTATTATCTCA
** *
73373023 CACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCC
73373088 GGA
66 GGA
73373091 CATCATTCGA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.05
79 38 0.64
80 18 0.31
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCC
GGATTTATTATCTCA
Found at i:73375122 original size:40 final size:40
Alignment explanation
Indices: 73375077--73375244 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
73375067 CGGAATACAA
*
73375077 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
73375117 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
73375157 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
73375197 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
73375237 CCGGATAT
1 CCGGATAT
73375245 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:73375217 original size:80 final size:80
Alignment explanation
Indices: 73375077--73375244 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 80
73375067 CGGAATACAA
* * *
73375077 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
73375142 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
73375157 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
73375220 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
73375237 CCGGATAT
1 CCGGATAT
73375245 CATTCAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 75 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:73383467 original size:30 final size:30
Alignment explanation
Indices: 73383433--73383493 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
73383423 TTCCCGAGCC
73383433 TAGGGACAAAAGTGTAAATATGCAAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
* * * * *
73383463 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
73383493 T
1 T
73383494 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGACAAAAGTGTAAATATGCAAAAGTT
Found at i:73388268 original size:39 final size:40
Alignment explanation
Indices: 73388168--73388349 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
73388158 TCGAATGATG
* * *
73388168 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
73388208 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
73388248 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
73388286 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
73388327 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
73388350 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:73388313 original size:78 final size:80
Alignment explanation
Indices: 73388168--73388349 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
73388158 TCGAATGATG
* * * *
73388168 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
73388233 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
73388248 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
73388310 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
73388327 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
73388350 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:73396780 original size:40 final size:39
Alignment explanation
Indices: 73396735--73396941 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
73396725 CGGAATACAA
*
73396735 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73396775 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73396815 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
73396855 CCGGATGTGGTCACTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
73396894 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
73396934 CCGGATAT
1 CCGGATAT
73396942 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
39 34 0.24
40 107 0.76
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73396875 original size:80 final size:79
Alignment explanation
Indices: 73396735--73396940 Score: 243
Period size: 79 Copynumber: 2.6 Consensus size: 79
73396725 CGGAATACAA
* * *
73396735 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
73396800 CCTTCGGGTATTAGC
65 CCTTCGGGTATTAAC
* * **
73396815 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
73396879 CCTTCGGGTCTTAAC
65 CCTTCGGGTATTAAC
** * ** * *
73396894 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
73396941 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 55 0.51
80 50 0.47
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGC
CTTCGGGTATTAAC
Found at i:73407188 original size:33 final size:33
Alignment explanation
Indices: 73407146--73407209 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
73407136 TGTTGTGTTT
*
73407146 CATAAATGTATGCTTGTTCCAGTGGTCGAGTTG
1 CATAAATGTATACTTGTTCCAGTGGTCGAGTTG
73407179 CATAAATGTATACTTGTTCCAGTGGTCGAGT
1 CATAAATGTATACTTGTTCCAGTGGTCGAGT
73407210 GTCCTAAGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (33 bp):
CATAAATGTATACTTGTTCCAGTGGTCGAGTTG
Found at i:73408418 original size:75 final size:75
Alignment explanation
Indices: 73408295--73408445 Score: 239
Period size: 75 Copynumber: 2.0 Consensus size: 75
73408285 AGAGCATTGG
* *
73408295 GGAGATTGCATTGGTTCTAGTTCAGAAAGGGGTTCTGCGACTGTTCAATTGGTAAGTATTGTTGA
1 GGAGATTGCATTGGTTCTAGTTCAGAAAGGGGTTCTGCGACTATTCAATTGGTAAGTACTGTTGA
73408360 ATAGGGTTAA
66 ATAGGGTTAA
** * * *
73408370 GGAGATTGTGTTGGTTCTAGTTCAGGAGGGGGTTCTGCGACTATTCAATTGGTAAGTACTGTTGC
1 GGAGATTGCATTGGTTCTAGTTCAGAAAGGGGTTCTGCGACTATTCAATTGGTAAGTACTGTTGA
73408435 ATAGGGTTAA
66 ATAGGGTTAA
73408445 G
1 G
73408446 TATATCCACT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.23, C:0.10, G:0.32, T:0.34
Consensus pattern (75 bp):
GGAGATTGCATTGGTTCTAGTTCAGAAAGGGGTTCTGCGACTATTCAATTGGTAAGTACTGTTGA
ATAGGGTTAA
Found at i:73416094 original size:41 final size:41
Alignment explanation
Indices: 73416016--73416176 Score: 143
Period size: 41 Copynumber: 4.0 Consensus size: 41
73416006 AATACTCGAT
*** **
73416016 ATCTTGCACACTAAGTGCCAACGCATAGCTGAAGCTATTATA
1 ATCTTGCACACTAAGTGCCATTTCATAGCCAAAGCTATT-TA
* *
73416058 ATCTCGCACACTAAGTGCC-TTTCATAGCCGAAGCTATCTTA
1 ATCTTGCACACTAAGTGCCATTTCATAGCCAAAGCTAT-TTA
* ** *
73416099 GTCTTGCACACTAAGTGCCACAT-ATAGCCAAAGCTATTTCG
1 ATCTTGCACACTAAGTGCCATTTCATAGCCAAAGCTATTT-A
*
73416140 AT-TTGCACACTAAGTG-C-TTTATATAGCCAAAGCTATT
1 ATCTTGCACACTAAGTGCCATTT-CATAGCCAAAGCTATT
73416177 CCGATTCACA
Statistics
Matches: 100, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 31 0.31
41 47 0.47
42 20 0.20
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (41 bp):
ATCTTGCACACTAAGTGCCATTTCATAGCCAAAGCTATTTA
Found at i:73416164 original size:40 final size:40
Alignment explanation
Indices: 73416063--73416206 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
73416053 TTATAATCTC
* * *
73416063 GCACACTAAGTGCCTTT-CATAGCCGAAGCTATCTTAG-TCTT
1 GCACACTAAGTG-CTTTATATAGCCAAAGCTAT-TTCGAT-TT
***
73416104 GCACACTAAGTGCCACATATAGCCAAAGCTATTTCGATTT
1 GCACACTAAGTGCTTTATATAGCCAAAGCTATTTCGATTT
* *
73416144 GCACACTAAGTGCTTTATATAGCCAAAGCTATTCCGATTC
1 GCACACTAAGTGCTTTATATAGCCAAAGCTATTTCGATTT
*
73416184 ACACACTAAGTGCTTTATATAGC
1 GCACACTAAGTGCTTTATATAGC
73416207 TGAAACTATC
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 63 0.71
41 26 0.29
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (40 bp):
GCACACTAAGTGCTTTATATAGCCAAAGCTATTTCGATTT
Found at i:73416167 original size:81 final size:83
Alignment explanation
Indices: 73416017--73416175 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 83
73416007 ATACTCGATA
* **
73416017 TCTTGCACACTAAGTGCCAACGCATAGCTGAAGCTATTATAATCTCGCACACTAAGTGCCTTTCA
1 TCTTGCACACTAAGTGCCAACACATAGCCAAAGCTATTATAATCTCGCACACTAAGTGCCTTTCA
*
73416082 TAGCCGAAGCTATCTTAG
66 TAGCCAAAGCTATCTTAG
* * *
73416100 TCTTGCACACTAAGTGCC-ACATATAGCCAAAGCTATT-TCGAT-TTGCACACTAAGTG-CTTTA
1 TCTTGCACACTAAGTGCCAACACATAGCCAAAGCTATTAT-AATCTCGCACACTAAGTGCCTTT-
*
73416161 TATAGCCAAAGCTAT
64 CATAGCCAAAGCTAT
73416176 TCCGATTCAC
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 4 0.06
81 27 0.41
82 17 0.26
83 18 0.27
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (83 bp):
TCTTGCACACTAAGTGCCAACACATAGCCAAAGCTATTATAATCTCGCACACTAAGTGCCTTTCA
TAGCCAAAGCTATCTTAG
Found at i:73416228 original size:40 final size:40
Alignment explanation
Indices: 73416105--73416236 Score: 135
Period size: 40 Copynumber: 3.3 Consensus size: 40
73416095 CTTAGTCTTG
*** * * **
73416105 CACACTAAGTGCCACATATAGCCAAAGCTATTTCGATTTG
1 CACACTAAGTGCTTTATATAGCCAAAGCTATTCCAATTCA
*
73416145 CACACTAAGTGCTTTATATAGCCAAAGCTATTCCGATTCA
1 CACACTAAGTGCTTTATATAGCCAAAGCTATTCCAATTCA
*
73416185 CACACTAAGTGCTTTATATAGCTGAAA-CTA-TCTCAATAT-A
1 CACACTAAGTGCTTTATATAGC-CAAAGCTATTC-CAAT-TCA
73416225 CACACTAAGTGC
1 CACACTAAGTGC
73416237 CAAACATAAT
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
39 2 0.02
40 75 0.93
41 4 0.05
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (40 bp):
CACACTAAGTGCTTTATATAGCCAAAGCTATTCCAATTCA
Found at i:73420549 original size:79 final size:81
Alignment explanation
Indices: 73420425--73420616 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
73420415 GGATATAACG
* **
73420425 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATC
* *
73420488 TTAACCCGGGTTTAGTA
65 TTAACCCGGATATAGTA
* *
73420505 ACTCGCACAAATGCCTTCGGG-CTTAGCTCGGATT-TATTAACTCGCACGAATGCCTTCGGATCT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCT
** *
73420568 TAGTCCGGATATAGTC
66 TAACCCGGATATAGTA
*
73420584 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
73420617 CATCATTCGA
Statistics
Matches: 96, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.55
80 40 0.42
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCT
TAACCCGGATATAGTA
Found at i:73420557 original size:39 final size:40
Alignment explanation
Indices: 73420425--73420616 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
73420415 GGATATAACG
* * *
73420425 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCCGG-TTATAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
*
73420465 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * *
73420505 ACTCGCACAAATGCCTTCGGG-CTTAGCTCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
** * *
73420544 ACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAGTA
* * *
73420584 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
73420617 CATCATTCGA
Statistics
Matches: 129, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.24
40 84 0.65
41 12 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:73431790 original size:40 final size:40
Alignment explanation
Indices: 73431746--73431884 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
73431736 GGATATAATG
73431746 ACTCGCTA-AAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGC-ACAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* *
73431786 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* * * *
73431826 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* *
73431865 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
73431885 ATCTTAGTCC
Statistics
Matches: 88, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
39 34 0.39
40 48 0.55
41 6 0.07
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:73431867 original size:79 final size:81
Alignment explanation
Indices: 73431730--73431937 Score: 232
Period size: 79 Copynumber: 2.6 Consensus size: 81
73431720 CCTTCAAAAT
* * **
73431730 TTAA-CCGGATATAATGACTCGCTA-AAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGC
1 TTAACCCGGATATAGTAACTCGC-ACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGC
*
73431792 ACGAATGCCTTCGGGA-C
65 ACGAACGCCTTC-GGATC
* * *
73431809 TTAACCCGGGTTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCA
1 TTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
73431872 CGAACGCCTTCGGATC
66 CGAACGCCTTCGGATC
** * *
73431888 TTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
73431938 CATCATTTGA
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.53
80 48 0.44
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
TTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCA
CGAACGCCTTCGGATC
Found at i:73434567 original size:23 final size:24
Alignment explanation
Indices: 73434536--73434646 Score: 108
Period size: 23 Copynumber: 4.7 Consensus size: 24
73434526 GCTGATGGAT
73434536 AGTAAGCTCTAT-TGAGCTGAAAC
1 AGTAAGCTCTATATGAGCTGAAAC
*
73434559 GGTAAGCTCTGA-A-GAGCTGAAAC
1 AGTAAGCTCT-ATATGAGCTGAAAC
*
73434582 AGTAAGCTC-ATACGAGCTGAGAAC
1 AGTAAGCTCTATATGAGCTGA-AAC
*
73434606 AGCAAGCTCT-TATGAGCTGATATATC
1 AGTAAGCTCTATATGAGCTGA-A-A-C
73434632 AGTAAGCTC-ATATGA
1 AGTAAGCTCTATATGA
73434647 ACTGCGGTGA
Statistics
Matches: 73, Mismatches: 6, Indels: 15
0.78 0.06 0.16
Matches are distributed among these distances:
21 1 0.01
22 1 0.01
23 34 0.47
24 22 0.30
25 1 0.01
26 14 0.19
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (24 bp):
AGTAAGCTCTATATGAGCTGAAAC
Found at i:73447260 original size:40 final size:40
Alignment explanation
Indices: 73447215--73447382 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73447205 CGGAATACAA
73447215 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
73447255 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73447295 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
73447335 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
73447375 CCGGATAT
1 CCGGATAT
73447383 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73455310 original size:40 final size:40
Alignment explanation
Indices: 73455265--73455432 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73455255 CGGAATACAA
73455265 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
73455305 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73455345 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
73455385 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
73455425 CCGGATAT
1 CCGGATAT
73455433 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73458617 original size:37 final size:37
Alignment explanation
Indices: 73458561--73458703 Score: 225
Period size: 37 Copynumber: 3.9 Consensus size: 37
73458551 TCAGACGAAG
*
73458561 TCTCCACACGA-AGTTATCGGGTCTTACCCGGACAAAA
1 TCTCCACAC-ATAGTCATCGGGTCTTACCCGGACAAAA
*
73458598 TCTCCACACATAGTCATCGGGTTTTACCCGGACAAAA
1 TCTCCACACATAGTCATCGGGTCTTACCCGGACAAAA
* *
73458635 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
1 TCTCCACACATAGTCATCGGGTCTTACCCGGACAAAA
*
73458672 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACATAGTCATCGGGTCTTACCCGGA
73458704 ATATATTTCC
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
36 1 0.01
37 99 0.99
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
TCTCCACACATAGTCATCGGGTCTTACCCGGACAAAA
Found at i:73458979 original size:48 final size:48
Alignment explanation
Indices: 73458849--73459129 Score: 456
Period size: 48 Copynumber: 5.8 Consensus size: 48
73458839 ACACATCGCC
*
73458849 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
73458899 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
**
73458947 TACATATCGCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
73458995 TACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATACCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73459043 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
73459091 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
73459130 TGCATGTTCA
Statistics
Matches: 214, Mismatches: 15, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
48 171 0.80
49 2 0.01
50 41 0.19
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.34
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:73459178 original size:47 final size:47
Alignment explanation
Indices: 73459099--73459292 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
73459089 CATACATATT
* * * *
73459099 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
73459146 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
73459193 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
73459240 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
73459287 TCACAT
1 TCACAT
73459293 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:73459219 original size:22 final size:22
Alignment explanation
Indices: 73459192--73459263 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
73459182 GCTCACATTC
73459192 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
73459214 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
73459238 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
73459261 ATC
1 ATC
73459264 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:73459223 original size:94 final size:94
Alignment explanation
Indices: 73459052--73459292 Score: 290
Period size: 94 Copynumber: 2.6 Consensus size: 94
73459042 ATACATATTT
* * * *
73459052 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* *
73459114 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
73459147 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
73459212 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
73459241 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
73459293 AAAATCCTAA
Statistics
Matches: 127, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
93 1 0.01
94 93 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:73462060 original size:27 final size:26
Alignment explanation
Indices: 73461998--73462067 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 26
73461988 TGTCACATTA
73461998 GCTC-TTATGAGCATCCCGATTAAAG
1 GCTCTTTATGAGCATCCCGATTAAAG
*
73462023 GCTCTTTATGAGCATCCTG-TTAAAGTG
1 GCTCTTTATGAGCATCCCGATTAAA--G
*
73462050 GCTCTTTATGAGCTTCCC
1 GCTCTTTATGAGCATCCC
73462068 AATAATGCTC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
25 9 0.23
26 13 0.33
27 17 0.44
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.34
Consensus pattern (26 bp):
GCTCTTTATGAGCATCCCGATTAAAG
Found at i:73473037 original size:25 final size:26
Alignment explanation
Indices: 73473009--73473058 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
73472999 ATAGATTTCA
73473009 TATAATT-TTAATGGG-TATATTTTAC
1 TATAATTATTAA-GGGATATATTTTAC
*
73473034 TATAATTATTAAGGGATTTATTTTA
1 TATAATTATTAAGGGATATATTTTA
73473059 ATTTCGATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (26 bp):
TATAATTATTAAGGGATATATTTTAC
Found at i:73477783 original size:47 final size:47
Alignment explanation
Indices: 73477729--73478148 Score: 626
Period size: 47 Copynumber: 9.0 Consensus size: 47
73477719 TTAGGATTTT
** *
73477729 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73477776 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73477823 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73477870 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73477917 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
73477964 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73478011 ATGTGATAAATGTGAGCATGCATATATGTGATAAGG-CGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73478057 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
73478104 ATGTGGTGAATATGAAAATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
73478149 TAGTGTGAAA
Statistics
Matches: 336, Mismatches: 36, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
46 44 0.13
47 292 0.87
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73478203 original size:187 final size:187
Alignment explanation
Indices: 73477750--73478156 Score: 611
Period size: 187 Copynumber: 2.2 Consensus size: 187
73477740 GTGAATGTGT
* * * * * *
73477750 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTG
1 ATATATGTGATAAAGCCGAATGGCCTATGTGATAAATGTGAACATGCATATATGTGAT-AGGCCG
* * * * * *
73477815 AATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
65 AACGACCAATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
*
73477880 TGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGC
130 TGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAATGC
* *
73477938 ATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATATGTGATGAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCTATGTGATAAATGTGAACATGCATATATGTGAT-AGGCCG
* *
73478003 AATGGCCAATGTGATAAATGTGAGCATGCATATATGTGATAAGG-CGAATGGCCAATGTGATGAA
65 AACGACCAATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
73478067 TGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAATGC
130 TGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAATGC
*
73478125 ATATATGTGGTAAAGCCGAATGG-CTAGTGTGA
1 ATATATGTGATAAAGCCGAATGGCCTA-TGTGA
73478157 AATATGTAGG
Statistics
Matches: 206, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
186 3 0.01
187 103 0.50
188 100 0.49
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (187 bp):
ATATATGTGATAAAGCCGAATGGCCTATGTGATAAATGTGAACATGCATATATGTGATAGGCCGA
ACGACCAATGTGATAAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
GTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAATGC
Found at i:73478364 original size:37 final size:37
Alignment explanation
Indices: 73478321--73478497 Score: 291
Period size: 37 Copynumber: 4.8 Consensus size: 37
73478311 CCGGGTGAAA
73478321 CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
1 CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
*
73478358 CCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGAC
1 CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
* *
73478395 CCGATGACTACATGTGGAGATTTTGTCCGGGTAAGAC
1 CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
*
73478432 CCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGAC
1 CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
* * *
73478469 CCGATAACTTCGTGTGGAGATTACGTCCG
1 CCGATGACTACGTGTGGAGATTATGTCCG
73478498 AGCTAAAAGT
Statistics
Matches: 131, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 131 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
CCGATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
Found at i:73479892 original size:80 final size:80
Alignment explanation
Indices: 73479759--73480003 Score: 364
Period size: 80 Copynumber: 3.1 Consensus size: 80
73479749 GAGAATTGAG
* *
73479759 AGTGAAATGTCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
73479824 AAGAGCATTCATGCT
66 AAGAGCATTCATGCT
73479839 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
*
73479904 AAGAGCATTCGTGCT
66 AAGAGCATTCATGCT
* * * * * * * * *
73479919 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGCGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
*
73479984 AAGAGCAATCATGCT
66 AAGAGCATTCATGCT
*
73479999 GGTGA
1 AGTGA
73480004 CGTGTATTCG
Statistics
Matches: 150, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 150 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCATGCT
Found at i:73480000 original size:40 final size:40
Alignment explanation
Indices: 73479759--73479990 Score: 302
Period size: 40 Copynumber: 5.8 Consensus size: 40
73479749 GAGAATTGAG
* *
73479759 AGTGAAATGTCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * * * *
73479799 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
73479839 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * * *
73479879 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* *
73479919 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * * **
73479959 GGCGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCA
73479991 ATCATGCTGG
Statistics
Matches: 163, Mismatches: 29, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 163 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:73484102 original size:47 final size:47
Alignment explanation
Indices: 73484048--73484374 Score: 438
Period size: 47 Copynumber: 7.0 Consensus size: 47
73484038 TTAGGATTTT
** *
73484048 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
73484095 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATAGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73484142 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73484189 ATGTGATGAATGTGAACATACATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
73484236 ATGTGATAAACGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73484283 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
73484330 ATGTGGTGAATATGAAAATGCATTTATGTGGTAAAGCCAAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
73484375 TAGTGTGAAA
Statistics
Matches: 244, Mismatches: 36, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 244 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73484338 original size:25 final size:25
Alignment explanation
Indices: 73484263--73484338 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
73484253 ATGCATATAT
73484263 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
73484288 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
73484310 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
73484335 GTGA
1 GTGA
73484339 ATATGAAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:73484587 original size:37 final size:37
Alignment explanation
Indices: 73484537--73484725 Score: 315
Period size: 37 Copynumber: 5.1 Consensus size: 37
73484527 GGAAATATAT
*
73484537 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73484574 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73484611 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73484648 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
73484685 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
73484722 TCCG
1 TCCG
73484726 AGCTAAAGGT
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 144 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:73485682 original size:35 final size:36
Alignment explanation
Indices: 73485635--73485713 Score: 144
Period size: 35 Copynumber: 2.2 Consensus size: 36
73485625 TAAATTAAAC
73485635 TATAGA-AGATAAGGGAAAAGATAGCTTTTGATTGG
1 TATAGATAGATAAGGGAAAAGATAGCTTTTGATTGG
73485670 TATAGATA-ATAAGGGAAAAGATAGCTTTTGATTGG
1 TATAGATAGATAAGGGAAAAGATAGCTTTTGATTGG
73485705 TATAGATAG
1 TATAGATAG
73485714 TGCGAATAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
35 41 0.98
36 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.27, T:0.30
Consensus pattern (36 bp):
TATAGATAGATAAGGGAAAAGATAGCTTTTGATTGG
Found at i:73486403 original size:20 final size:21
Alignment explanation
Indices: 73486380--73486451 Score: 82
Period size: 20 Copynumber: 3.7 Consensus size: 21
73486370 AAAAATTACA
*
73486380 AAAAAATT-AAATTAATTTTT
1 AAAAAATTCAAAATAATTTTT
73486400 -AAAAATTCAAAATAATTTTT
1 AAAAAATTCAAAATAATTTTT
*
73486420 --AAAATTCAAAAT-ATTTAT
1 AAAAAATTCAAAATAATTTTT
*
73486438 AAAAATTTCAAAAT
1 AAAAAATTCAAAAT
73486452 TTATATGTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.11
19 19 0.41
20 22 0.48
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (21 bp):
AAAAAATTCAAAATAATTTTT
Found at i:73486405 original size:19 final size:20
Alignment explanation
Indices: 73486381--73486493 Score: 103
Period size: 19 Copynumber: 5.6 Consensus size: 20
73486371 AAAATTACAA
*
73486381 AAAAATT-AAATTAATTTTT
1 AAAAATTCAAAATAATTTTT
73486400 AAAAATTCAAAATAATTTTT
1 AAAAATTCAAAATAATTTTT
*
73486420 -AAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTTTT
73486438 AAAAATTTCAAAATTTATATGTTTT
1 AAAAA-TTCAAAA--TA-AT-TTTT
73486463 AAAAATT-ATAAAT--TTTTT
1 AAAAATTCA-AAATAATTTTT
73486481 AAAAATTCTAAAA
1 AAAAATTC-AAAA
73486494 ATATATAAAA
Statistics
Matches: 80, Mismatches: 3, Indels: 22
0.76 0.03 0.21
Matches are distributed among these distances:
18 16 0.20
19 27 0.34
20 19 0.24
22 2 0.03
23 1 0.01
24 7 0.09
25 8 0.10
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTT
Found at i:73496030 original size:40 final size:41
Alignment explanation
Indices: 73495972--73496168 Score: 140
Period size: 40 Copynumber: 4.9 Consensus size: 41
73495962 GGATATAGCG
* * *
73495972 ACTCGCTCG-ATTGTCTTCGAGACATT-GCCCGG-TTATAGTG
1 ACTCGCACGAATTGCCTTCGAGA-ATTAGCCCGGATT-TAGTA
* *
73496012 ATTCGCAC-AATTGCCTTCGGGAATTAGCCCGGATTTAGTA
1 ACTCGCACGAATTGCCTTCGAGAATTAGCCCGGATTTAGTA
* * * * * *
73496052 ACTCGCACGAA-TGCCTTTGGGACTTAACCCGGTTTTGGTA
1 ACTCGCACGAATTGCCTTCGAGAATTAGCCCGGATTTAGTA
* * * * * *
73496092 ACTCGCAC-AAATGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCACGAATTGCCTTCGAGAATTAGCCCGGATTTAGTA
* *
73496132 ACTCGCAC-AAATGCCTTCGGGAATT-GACCCGGATTTA
1 ACTCGCACGAATTGCCTTCGAGAATTAG-CCCGGATTTA
73496169 ATCACTTAGC
Statistics
Matches: 135, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
39 5 0.04
40 126 0.93
41 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.29
Consensus pattern (41 bp):
ACTCGCACGAATTGCCTTCGAGAATTAGCCCGGATTTAGTA
Found at i:73496084 original size:80 final size:79
Alignment explanation
Indices: 73495999--73496205 Score: 234
Period size: 80 Copynumber: 2.6 Consensus size: 79
73495989 CGAGACATTG
* * * *
73495999 CCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAAT
1 CCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAAT
* *
73496064 GCCTTTGGGACTTAA
65 GCCTTCGGGAATTAA
* * * * *
73496079 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAAT
1 CCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAAT
*
73496144 GCCTTCGGGAATTGA
65 GCCTTCGGGAATTAA
* * * *
73496159 CCCGGATTTAATCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCCGG-TTTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
73496206 CACCATTCGA
Statistics
Matches: 104, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
80 74 0.71
81 30 0.29
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (79 bp):
CCCGGTTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG
CCTTCGGGAATTAA
Found at i:73496193 original size:41 final size:40
Alignment explanation
Indices: 73496016--73496205 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
73496006 ATAGTGATTC
* * * *
73496016 GCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTC
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAATAACTA
* * * * ** *
73496056 GCACGAATGCCTTTGGGACTTAACCCGGTTTTGGTAACTC
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAATAACTA
* * ** *
73496096 GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTC
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAATAACTA
* *
73496136 GCACAAATGCCTTCGGGAATTGACCCGGATTTAATCACTTA
1 GCACAAATGCCTTCGGGAATTAACCCGGATTTAATAAC-TA
* * *
73496177 GCACAAAAGCCTTCGGGACTTAGCCCGGA
1 GCACAAATGCCTTCGGGAATTAACCCGGA
73496206 CACCATTCGA
Statistics
Matches: 129, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 103 0.80
41 26 0.20
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGAATTAACCCGGATTTAATAACTA
Found at i:73501705 original size:15 final size:15
Alignment explanation
Indices: 73501685--73501715 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
73501675 TCCACTTTTT
73501685 GTTTTTCTTTTCTAA
1 GTTTTTCTTTTCTAA
73501700 GTTTTTCTTTTCTAA
1 GTTTTTCTTTTCTAA
73501715 G
1 G
73501716 CTCTTCGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.10, T:0.65
Consensus pattern (15 bp):
GTTTTTCTTTTCTAA
Found at i:73504087 original size:40 final size:40
Alignment explanation
Indices: 73504031--73504250 Score: 239
Period size: 40 Copynumber: 5.5 Consensus size: 40
73504021 GCTCGATTGT
* * *
73504031 CTTCGGGACATT-GCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCACAAATGC
*
73504071 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
73504111 CTTCGGGACTTAACCTGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
73504151 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
73504191 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
73504232 CTTCGGGACTTAGCCCGGA
1 CTTCGGGAATTAGCCCGGA
73504251 CACCATTCGA
Statistics
Matches: 156, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 124 0.79
41 28 0.18
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:73507259 original size:13 final size:13
Alignment explanation
Indices: 73507241--73507266 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73507231 TTTTATGTAA
73507241 TAAGGACTAAATT
1 TAAGGACTAAATT
73507254 TAAGGACTAAATT
1 TAAGGACTAAATT
73507267 GTAAAAGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
TAAGGACTAAATT
Found at i:73507741 original size:24 final size:24
Alignment explanation
Indices: 73507704--73507772 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 24
73507694 TACTGATATA
*
73507704 TCAGCTCGTAAGAGCTTATTGTTT
1 TCAGCTCGAAAGAGCTTATTGTTT
** **
73507728 TCAGCTCGCCAGAGCTTACCG-TT
1 TCAGCTCGAAAGAGCTTATTGTTT
73507751 TCAGCTC-AATAGAGCTTATTGT
1 TCAGCTCGAA-AGAGCTTATTGT
73507773 CCATCAGCTC
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
23 18 0.51
24 17 0.49
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (24 bp):
TCAGCTCGAAAGAGCTTATTGTTT
Found at i:73507970 original size:19 final size:19
Alignment explanation
Indices: 73507938--73508017 Score: 63
Period size: 19 Copynumber: 4.2 Consensus size: 19
73507928 AAAAGCTATG
* *
73507938 TGTTACACGGATAAATTAC
1 TGTTATACGAATAAATTAC
* *
73507957 TGTTATATGAATAAAGTAC
1 TGTTATACGAATAAATTAC
* * * *
73507976 TATTTATACGGATGAGTTAC
1 T-GTTATACGAATAAATTAC
*
73507996 TGTTAT-CGAATGAATTAC
1 TGTTATACGAATAAATTAC
73508014 TGTT
1 TGTT
73508018 TATATGATTG
Statistics
Matches: 47, Mismatches: 13, Indels: 3
0.75 0.21 0.05
Matches are distributed among these distances:
18 14 0.30
19 20 0.43
20 13 0.28
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (19 bp):
TGTTATACGAATAAATTAC
Found at i:73511514 original size:14 final size:14
Alignment explanation
Indices: 73511495--73511528 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
73511485 AGGTATGGGC
73511495 ATTATGAATTTCTT
1 ATTATGAATTTCTT
73511509 ATTATGAATTTCTT
1 ATTATGAATTTCTT
*
73511523 GTTATG
1 ATTATG
73511529 CTTTCTAGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (14 bp):
ATTATGAATTTCTT
Found at i:73513774 original size:14 final size:14
Alignment explanation
Indices: 73513755--73513785 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
73513745 TTTTCTTAAC
*
73513755 CGGTTCGGTTCACT
1 CGGTTCGGTTCAAT
73513769 CGGTTCGGTTCAAT
1 CGGTTCGGTTCAAT
73513783 CGG
1 CGG
73513786 ACCATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.26, G:0.32, T:0.32
Consensus pattern (14 bp):
CGGTTCGGTTCAAT
Found at i:73515059 original size:2 final size:2
Alignment explanation
Indices: 73515052--73515085 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
73515042 GAGACTAGTC
*
73515052 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73515086 CATGATACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:73518881 original size:40 final size:39
Alignment explanation
Indices: 73518721--73518914 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
73518711 TGTGTATGAA
* *
73518721 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
73518760 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
73518799 TGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGCGAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
73518838 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * * *
73518878 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
73518915 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:73518941 original size:79 final size:78
Alignment explanation
Indices: 73518738--73518952 Score: 209
Period size: 78 Copynumber: 2.7 Consensus size: 78
73518728 ATTGTGATAT
* * ** * * *
73518738 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTG
1 CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAAATGTG
* *
73518803 CGAGATATGATAT
66 CGAGATATCATAA
** * **
73518816 CCGGGCTAAGCCCGAAGGCGATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAAATGT
* *
73518881 GCGGGTTATCATAA
65 GCGAGATATCATAA
* * *
73518895 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCGATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
73518953 TATGTGATTT
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 46 0.39
79 45 0.38
80 25 0.21
81 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAAATGTG
CGAGATATCATAA
Done.