Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 236 of 433
Found at i:73530256 original size:40 final size:39
Alignment explanation
Indices: 73530212--73530429 Score: 226
Period size: 40 Copynumber: 5.5 Consensus size: 39
73530202 GCTCGATTGT
* * *
73530212 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTT-TAGTAACTCGCACAAATGC
* *
73530252 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* *
73530292 CTT-GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* *
73530331 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
73530371 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
73530412 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
73530430 ACACCATTCG
Statistics
Matches: 154, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 36 0.23
40 90 0.58
41 27 0.18
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:73530309 original size:79 final size:79
Alignment explanation
Indices: 73530212--73530430 Score: 244
Period size: 79 Copynumber: 2.7 Consensus size: 79
73530202 GCTCGATTGT
* * * *
73530212 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAG
1 CTTCGGGA-ATTAACCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAG
*
73530276 TAACTCGCACGAATGC
64 TAACTCGCACAAATGC
* * * * * *
73530292 CTT-GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGT
1 CTTCGGGAATTAACCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
73530356 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* * * *
73530371 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CTTCGGGAATTAACCCGG-TTTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
73530431 CACCATTCGA
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
78 2 0.02
79 62 0.54
80 22 0.19
81 28 0.25
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (79 bp):
CTTCGGGAATTAACCCGGTTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
ACTCGCACAAATGC
Found at i:73538341 original size:40 final size:41
Alignment explanation
Indices: 73538297--73538515 Score: 227
Period size: 40 Copynumber: 5.5 Consensus size: 41
73538287 GCTCGATTGT
* * * *
73538297 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
73538337 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
73538377 CTTCGGGAC-TTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
73538417 CTTCGGGAC-TTAACCCGGTTTTGGTAACTCGTACAAATGC
1 CTTCGGGACATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * * *
73538457 CTTCGGGA-ATT-GACCCGGATTTAATCACTTAGCACAAAAGC
1 CTTCGGGACATTAG-CCCGGTTTTAGTAAC-TCGCACAAATGC
73538498 CTTCGGGAC-TTAGCCCGG
1 CTTCGGGACATTAGCCCGG
73538516 ACACCATTCG
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.02
40 125 0.82
41 24 0.16
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (41 bp):
CTTCGGGACATTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:73540284 original size:40 final size:40
Alignment explanation
Indices: 73540229--73540380 Score: 225
Period size: 40 Copynumber: 3.8 Consensus size: 40
73540219 ATTGACTAGT
*
73540229 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGTGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
73540269 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
73540309 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
73540349 TCCAGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
73540381 AGTTATATCT
Statistics
Matches: 101, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 8 0.08
40 93 0.92
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:73542434 original size:43 final size:43
Alignment explanation
Indices: 73542309--73542513 Score: 222
Period size: 43 Copynumber: 4.8 Consensus size: 43
73542299 CGGAAAGCTC
* *
73542309 ATACAATGCCAACATCCCAGACGTGGTCTTGCATGT-AATCAA
1 ATACGATGCCAACATCCCAGACGTGGTCTTACATGTAAATCAA
* * *
73542351 ATATCGATGCC-ACTGTCCCAGGCAG-GGTCTTATATG-AAATCAA
1 ATA-CGATGCCAAC-ATCCCAGAC-GTGGTCTTACATGTAAATCAA
* * *
73542394 ATACGATGCCAACATCCTAGACGTGGCCTTACACGTAAATCAA
1 ATACGATGCCAACATCCCAGACGTGGTCTTACATGTAAATCAA
73542437 ATACGATGCCAACATCCCAGACGTGGTCTTACATGTAAATCGTAA
1 ATACGATGCCAACATCCCAGACGTGGTCTTACATGTAAATC--AA
* ** *
73542482 GT-CGATGCCAATGTCCCAGGCGTGGTCTTACA
1 ATACGATGCCAACATCCCAGACGTGGTCTTACA
73542514 CGAAAACACA
Statistics
Matches: 136, Mismatches: 18, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 26 0.19
43 78 0.57
44 28 0.21
45 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
ATACGATGCCAACATCCCAGACGTGGTCTTACATGTAAATCAA
Found at i:73542465 original size:85 final size:86
Alignment explanation
Indices: 73542309--73542477 Score: 211
Period size: 85 Copynumber: 2.0 Consensus size: 86
73542299 CGGAAAGCTC
* * * * *
73542309 ATACAATGCCAACATCCCAGACGTGGTCTTGCATGTAATCAAATATCGATGCCACTGTCCCAGGC
1 ATACAATGCCAACATCCCAGACGTGGCCTTACACGTAATCAAATATCGATGCCACTATCCCAGAC
*
73542374 AGGGTCTTATATG-AAATCAA
66 AGGGTCTTACATGTAAATCAA
* *
73542394 ATACGATGCCAACATCCTAGACGTGGCCTTACACGTAAATCAAATA-CGATGCCAAC-ATCCCAG
1 ATACAATGCCAACATCCCAGACGTGGCCTTACACGT-AATCAAATATCGATGCC-ACTATCCCAG
73542457 AC-GTGGTCTTACATGTAAATC
64 ACAG-GGTCTTACATGTAAATC
73542478 GTAAGTCGAT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
84 1 0.01
85 55 0.76
86 16 0.22
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (86 bp):
ATACAATGCCAACATCCCAGACGTGGCCTTACACGTAATCAAATATCGATGCCACTATCCCAGAC
AGGGTCTTACATGTAAATCAA
Found at i:73545998 original size:20 final size:20
Alignment explanation
Indices: 73545972--73546129 Score: 79
Period size: 20 Copynumber: 8.0 Consensus size: 20
73545962 TGGACAAGCA
73545972 ACCAGTAATGCAGATAAAC-
1 ACCAGTAATGCAGATAAACT
* * *
73545991 AGCCAGTAATGTAGACAAGCT
1 A-CCAGTAATGCAGATAAACT
*
73546012 ACCAGTAATGCAGATAAAAT
1 ACCAGTAATGCAGATAAACT
* * * * * * *
73546032 TCTAGCAGTGTAGACAAGCT
1 ACCAGTAATGCAGATAAACT
* *
73546052 GCCAGTAATGCAAATAAACT
1 ACCAGTAATGCAGATAAACT
* * * *
73546072 -GC-GTAATGCAAACAAGCT
1 ACCAGTAATGCAGATAAACT
** * * *
73546090 ACCAGTAATGTGGACAAGCC
1 ACCAGTAATGCAGATAAACT
*
73546110 ACCAGTGATGCAGATAAACT
1 ACCAGTAATGCAGATAAACT
73546130 GTTAATACTT
Statistics
Matches: 98, Mismatches: 37, Indels: 7
0.69 0.26 0.05
Matches are distributed among these distances:
18 14 0.14
19 3 0.03
20 80 0.82
21 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (20 bp):
ACCAGTAATGCAGATAAACT
Found at i:73546008 original size:40 final size:40
Alignment explanation
Indices: 73545964--73546099 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 40
73545954 CCAATTTATG
*
73545964 GACAAGCAACCAGTAATGCAGATAAACAGCCAGTAATGTA
1 GACAAGCTACCAGTAATGCAGATAAACAGCCAGTAATGTA
* * * *
73546004 GACAAGCTACCAGTAATGCAGATAAA-ATTCTAGCAGTGTA
1 GACAAGCTACCAGTAATGCAGATAAACA-GCCAGTAATGTA
* * * *
73546044 GACAAGCTGCCAGTAATGCAAATAAACTG-C-GTAATGCA
1 GACAAGCTACCAGTAATGCAGATAAACAGCCAGTAATGTA
*
73546082 AACAAGCTACCAGTAATG
1 GACAAGCTACCAGTAATG
73546100 TGGACAAGCC
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
38 21 0.27
39 1 0.01
40 57 0.72
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (40 bp):
GACAAGCTACCAGTAATGCAGATAAACAGCCAGTAATGTA
Found at i:73549518 original size:40 final size:40
Alignment explanation
Indices: 73549458--73549601 Score: 200
Period size: 40 Copynumber: 3.6 Consensus size: 40
73549448 TATTCGAATC
* *
73549458 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
** * * *
73549498 ATATCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
*
73549538 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
73549578 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
73549602 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.02
40 85 0.96
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:73549591 original size:80 final size:79
Alignment explanation
Indices: 73549458--73549637 Score: 247
Period size: 80 Copynumber: 2.3 Consensus size: 79
73549448 TATTCGAATC
* * * *
73549458 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGAACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGAACTAAGACCCGAAGGC-
* *
73549523 TTTGTGCGAGTTGCT
65 CTTGTGCGAGTGGCT
**
73549538 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGAACTAAGACCCGAAGGCC
*
73549603 TTGTGCGAGTGGTT
66 TTGTGCGAGTGGCT
73549617 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
73549638 ATACTTGGGT
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
77 1 0.01
78 13 0.14
79 18 0.20
80 58 0.64
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGAACTAAGACCCGAAGGCC
TTGTGCGAGTGGCT
Found at i:73551237 original size:19 final size:19
Alignment explanation
Indices: 73551213--73551251 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
73551203 AAATGTGTAA
73551213 GTTATGCCTACAAATTTAT
1 GTTATGCCTACAAATTTAT
**
73551232 GTTATGCCTATGAATTTAT
1 GTTATGCCTACAAATTTAT
73551251 G
1 G
73551252 ATGACACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (19 bp):
GTTATGCCTACAAATTTAT
Found at i:73554453 original size:13 final size:13
Alignment explanation
Indices: 73554435--73554459 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73554425 TAAGTAATCA
73554435 CACACGGGCGTGC
1 CACACGGGCGTGC
73554448 CACACGGGCGTG
1 CACACGGGCGTG
73554460 TCCCTATCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
CACACGGGCGTGC
Found at i:73568159 original size:22 final size:22
Alignment explanation
Indices: 73568131--73568203 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
73568121 CTATAAGTCA
*
73568131 ACAGGACGGCTCAACGCTGTAG
1 ACAGGACGGCTCAACGCCGTAG
* * *
73568153 ACAGGACGACTAAAGGCCGTAG
1 ACAGGACGGCTCAACGCCGTAG
* **
73568175 ACAGGACAGCTCAACATCGTAG
1 ACAGGACGGCTCAACGCCGTAG
*
73568197 GCAGGAC
1 ACAGGAC
73568204 AACTAAAGGC
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.33, C:0.26, G:0.30, T:0.11
Consensus pattern (22 bp):
ACAGGACGGCTCAACGCCGTAG
Found at i:73568180 original size:44 final size:44
Alignment explanation
Indices: 73568131--73568217 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
73568121 CTATAAGTCA
* * *
73568131 ACAGGACGGCTCAAC-GCTGTAGACAGGACGACTAAAGGCCGTAG
1 ACAGGACAGCTCAACATC-GTAGACAGGACAACTAAAGGCCGTAG
*
73568175 ACAGGACAGCTCAACATCGTAGGCAGGACAACTAAAGGCCGTA
1 ACAGGACAGCTCAACATCGTAGACAGGACAACTAAAGGCCGTA
73568218 AATAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 37 0.97
45 1 0.03
ACGTcount: A:0.34, C:0.25, G:0.29, T:0.11
Consensus pattern (44 bp):
ACAGGACAGCTCAACATCGTAGACAGGACAACTAAAGGCCGTAG
Found at i:73568217 original size:22 final size:22
Alignment explanation
Indices: 73568149--73568217 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
73568139 GCTCAACGCT
*
73568149 GTAGACAGGACGACTAAAGGCC
1 GTAGACAGGACAACTAAAGGCC
* * ***
73568171 GTAGACAGGACAGCTCAACATC
1 GTAGACAGGACAACTAAAGGCC
*
73568193 GTAGGCAGGACAACTAAAGGCC
1 GTAGACAGGACAACTAAAGGCC
73568215 GTA
1 GTA
73568218 AATAATGCAA
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.36, C:0.23, G:0.29, T:0.12
Consensus pattern (22 bp):
GTAGACAGGACAACTAAAGGCC
Found at i:73570723 original size:22 final size:22
Alignment explanation
Indices: 73570698--73570754 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 22
73570688 TTTCTTATTG
* *
73570698 TTTTCTTCTTATTTTGCTACTA
1 TTTTCTTATTATTTTGCCACTA
*
73570720 TTTTAC-TATTATGTTGCCACTA
1 TTTT-CTTATTATTTTGCCACTA
* *
73570742 TTTTGTTGTTATT
1 TTTTCTTATTATT
73570755 GTTTGGATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.16, C:0.14, G:0.09, T:0.61
Consensus pattern (22 bp):
TTTTCTTATTATTTTGCCACTA
Found at i:73570819 original size:30 final size:30
Alignment explanation
Indices: 73570783--73570844 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
73570773 ACTTCTTTTA
* *
73570783 TTGTTAATTTTTTTATTGTTTTA-AAGACAT
1 TTGTTAATTTTGTTATTATTTTAGAA-ACAT
73570813 TTGTTAATTTTGTTATTATTTTAGAAACAT
1 TTGTTAATTTTGTTATTATTTTAGAAACAT
73570843 TT
1 TT
73570845 TCTTGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.03, G:0.10, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAAACAT
Found at i:73570994 original size:12 final size:11
Alignment explanation
Indices: 73570966--73570999 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
73570956 ATATATATTT
73570966 TAAAATT-ATA
1 TAAAATTAATA
73570976 TAAAATTAATA
1 TAAAATTAATA
73570987 TAAAAATTAATA
1 T-AAAATTAATA
73570999 T
1 T
73571000 GGGCGGGCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 7 0.32
11 4 0.18
12 11 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TAAAATTAATA
Found at i:73577814 original size:27 final size:28
Alignment explanation
Indices: 73577771--73577827 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
73577761 TTCCGAAACC
73577771 TTTTGTTTTCCACGGTCGACCATCGAAA
1 TTTTGTTTTCCACGGTCGACCATCGAAA
* *
73577799 TTTT-TTTTCCATGGTCGACCATCGGAA
1 TTTTGTTTTCCACGGTCGACCATCGAAA
73577826 TT
1 TT
73577828 AGTTCCTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (28 bp):
TTTTGTTTTCCACGGTCGACCATCGAAA
Found at i:73591899 original size:24 final size:24
Alignment explanation
Indices: 73591861--73591926 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
73591851 TACTGATATA
* *
73591861 TCAACTCGTAAGAGCTTATTGTTT
1 TCAACTCGTATGAGCTTATTGTTC
*
73591885 TCAGCTCGT-TGGAGCTTATTGTTC
1 TCAACTCGTAT-GAGCTTATTGTTC
73591909 TCAACTCGTATGAGCTTA
1 TCAACTCGTATGAGCTTA
73591927 GCGATTCATC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 35 0.97
25 1 0.03
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (24 bp):
TCAACTCGTATGAGCTTATTGTTC
Found at i:73599199 original size:33 final size:33
Alignment explanation
Indices: 73599157--73599223 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
73599147 CCGTTTCGTT
73599157 TCTTCCATATGAAAGTAGACTCATCAAGGTTCA
1 TCTTCCATATGAAAGTAGACTCATCAAGGTTCA
73599190 TCTTCCATATGAAAGTAGACTCATCAAGGTTCA
1 TCTTCCATATGAAAGTAGACTCATCAAGGTTCA
73599223 T
1 T
73599224 TTACATAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (33 bp):
TCTTCCATATGAAAGTAGACTCATCAAGGTTCA
Found at i:73600176 original size:39 final size:39
Alignment explanation
Indices: 73600092--73600244 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
73600082 TATGGTAACC
** * *
73600092 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73600132 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73600171 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
73600210 TGCACAATTACCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
73600245 TCGAACATTC
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.85
40 15 0.15
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73600217 original size:78 final size:79
Alignment explanation
Indices: 73600061--73600243 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
73600051 TCGTTCAAAC
* * **
73600061 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
73600126 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
73600141 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
73600205 CAATTTGCACAATT
66 CAATTTGCACAATT
*
73600219 ACCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
73600244 CTCGAACATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:73607404 original size:39 final size:39
Alignment explanation
Indices: 73607320--73607472 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
73607310 TATGGTAACC
** * *
73607320 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73607360 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73607399 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73607438 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
73607473 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73607445 original size:78 final size:79
Alignment explanation
Indices: 73607289--73607471 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
73607279 TCGTTCAAAC
* * **
73607289 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
73607354 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
73607369 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
73607433 CAATTTGCACAATT
66 CAATTTGCACAATT
73607447 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
73607472 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:73609098 original size:49 final size:49
Alignment explanation
Indices: 73609026--73609125 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
73609016 GGGTTAGAGT
73609026 ACTGCAATGAATAAGATGATAAAGAATTGATCATTAGTGTTTGGTGGGC
1 ACTGCAATGAATAAGATGATAAAGAATTGATCATTAGTGTTTGGTGGGC
*
73609075 ACTGCAATGAATAAGTTGATAAAGAATTGATCATTAGTGTTTGGTGGGC
1 ACTGCAATGAATAAGATGATAAAGAATTGATCATTAGTGTTTGGTGGGC
73609124 AC
1 AC
73609126 ACATTTTTGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (49 bp):
ACTGCAATGAATAAGATGATAAAGAATTGATCATTAGTGTTTGGTGGGC
Found at i:73610263 original size:14 final size:15
Alignment explanation
Indices: 73610239--73610267 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
73610229 AGCGAGTGTA
73610239 TGTGTGTTAGAAGAT
1 TGTGTGTTAGAAGAT
73610254 TGTG-GTTAGAAGAT
1 TGTGTGTTAGAAGAT
73610268 GTCTTTCGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (15 bp):
TGTGTGTTAGAAGAT
Found at i:73610494 original size:27 final size:28
Alignment explanation
Indices: 73610459--73610512 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
73610449 TGAAATTCAT
*
73610459 ACTTTAATTA-TAAAATAATTAATTTTC
1 ACTTAAATTATTAAAATAATTAATTTTC
* *
73610486 ACTTAAATTATTAACATATTTAATTTT
1 ACTTAAATTATTAAAATAATTAATTTT
73610513 AATTATTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (28 bp):
ACTTAAATTATTAAAATAATTAATTTTC
Found at i:73611063 original size:14 final size:14
Alignment explanation
Indices: 73611044--73611070 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73611034 TCTTGCCTTC
73611044 CTCATTTCACACAA
1 CTCATTTCACACAA
73611058 CTCATTTCACACA
1 CTCATTTCACACA
73611071 CATCACTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (14 bp):
CTCATTTCACACAA
Found at i:73615410 original size:9 final size:9
Alignment explanation
Indices: 73615385--73615436 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
73615375 TTCATATCCT
73615385 TCTCTCAAC
1 TCTCTCAAC
* *
73615394 TCTATCAAT
1 TCTCTCAAC
73615403 TCTCTCAAAC
1 TCTCTC-AAC
* *
73615413 CCTCTCAAG
1 TCTCTCAAC
*
73615422 TCTCTCAAG
1 TCTCTCAAC
73615431 TCTCTC
1 TCTCTC
73615437 GTTTTTAATA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
9 28 0.80
10 7 0.20
ACGTcount: A:0.23, C:0.38, G:0.04, T:0.35
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:73615425 original size:19 final size:19
Alignment explanation
Indices: 73615385--73615429 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
73615375 TTCATATCCT
* *
73615385 TCTCTC-AACTCTATCAAT
1 TCTCTCAAACCCTATCAAG
*
73615403 TCTCTCAAACCCTCTCAAG
1 TCTCTCAAACCCTATCAAG
73615422 TCTCTCAA
1 TCTCTCAA
73615430 GTCTCTCGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.27, C:0.38, G:0.02, T:0.33
Consensus pattern (19 bp):
TCTCTCAAACCCTATCAAG
Found at i:73616853 original size:2 final size:2
Alignment explanation
Indices: 73616846--73616873 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
73616836 GATTAAATCA
73616846 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73616874 GTTATTATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73618728 original size:50 final size:50
Alignment explanation
Indices: 73618669--73618877 Score: 355
Period size: 50 Copynumber: 4.2 Consensus size: 50
73618659 CATTTAGCCA
* *
73618669 AATACACAAGATCAAATATAACATCACATATGTACATAACTATATGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATATGGCCG
* * *
73618719 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTAGCTG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATATGGCCG
*
73618769 AATATACAAGATCAAATATAACATCACATATGTACATACCTTTATGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATATGGCCG
73618819 AATATACAAGATCAAATATAACATCACATATGTACATACCTATAGTGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATA-TGGCCG
73618870 AATATACA
1 AATATACA
73618878 TGGTCATTTA
Statistics
Matches: 148, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 134 0.91
51 14 0.09
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.26
Consensus pattern (50 bp):
AATATACAAGATCAAATATAACATCACATATGTACATACCTATATGGCCG
Found at i:73624656 original size:42 final size:43
Alignment explanation
Indices: 73624566--73624710 Score: 150
Period size: 43 Copynumber: 3.4 Consensus size: 43
73624556 TAAAACCACG
** * * * * * *
73624566 TCTGGGATGTTGGCATCGATCTGTGCTATACATGTGAGACCATT
1 TCTGGGACATTGGCATCGATATTTGAT-TACATGTAAGACCCTA
*
73624610 TCTGGGACATTGGCATC-ATATTTGATTTCATGTAAGACCCTA
1 TCTGGGACATTGGCATCGATATTTGATTACATGTAAGACCCTA
* *
73624652 TCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACCAC-G
1 TCTGGGACATTGGCATCGATATTTGATTACATGTAAGACC-CTA
*
73624695 TCTGGGACGTTGGCAT
1 TCTGGGACATTGGCAT
73624711 TGTATGAGCT
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
42 28 0.33
43 41 0.48
44 16 0.19
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (43 bp):
TCTGGGACATTGGCATCGATATTTGATTACATGTAAGACCCTA
Found at i:73628633 original size:32 final size:32
Alignment explanation
Indices: 73628597--73628661 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
73628587 GTTGTATAGT
73628597 GTATGGTGAAAATAATTTTAATCATGCATTCA
1 GTATGGTGAAAATAATTTTAATCATGCATTCA
*
73628629 GTATGGTGCAAATAATTTTAATCATGCATTCA
1 GTATGGTGAAAATAATTTTAATCATGCATTCA
73628661 G
1 G
73628662 AACTCATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (32 bp):
GTATGGTGAAAATAATTTTAATCATGCATTCA
Found at i:73632132 original size:10 final size:10
Alignment explanation
Indices: 73632117--73632165 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
73632107 TAATTTTAGG
*
73632117 ATTTATTTTT
1 ATTTATCTTT
73632127 ATTTATCTTT
1 ATTTATCTTT
*
73632137 AATTATCTTT
1 ATTTATCTTT
73632147 ATTTAT-TTGT
1 ATTTATCTT-T
73632157 ATTTATCTT
1 ATTTATCTT
73632166 GTAAAATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.69
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:73638566 original size:40 final size:40
Alignment explanation
Indices: 73638511--73638760 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
73638501 AACATTGGAA
73638511 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73638551 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73638591 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73638631 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
73638671 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
73638710 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
73638751 CTATATCCGG
1 ATATATCCGG
73638761 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:73646673 original size:40 final size:40
Alignment explanation
Indices: 73646618--73646867 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
73646608 AACATTGGAA
73646618 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73646658 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73646698 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73646738 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
73646778 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
73646817 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
73646858 CTATATCCGG
1 ATATATCCGG
73646868 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:73649978 original size:17 final size:18
Alignment explanation
Indices: 73649956--73650010 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 18
73649946 TTTTTATTTC
73649956 TCTTTATTTTTATTCTTA
1 TCTTTATTTTTATTCTTA
73649974 T-TTTATTTATTATT-TTA
1 TCTTTATTT-TTATTCTTA
*
73649991 TCTTAATTATTTATTACTTA
1 TCTTTATT-TTTATT-CTTA
73650011 ATTATTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
17 11 0.35
18 16 0.52
19 1 0.03
20 3 0.10
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (18 bp):
TCTTTATTTTTATTCTTA
Found at i:73649984 original size:21 final size:22
Alignment explanation
Indices: 73649963--73650006 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
73649953 TTCTCTTTAT
73649963 TTTTATTCTTATTTTATTTATTA
1 TTTTA-TCTTATTTTATTTATTA
*
73649986 TTTTATCTTA-ATTATTTATTA
1 TTTTATCTTATTTTATTTATTA
73650007 CTTAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 10 0.50
22 5 0.25
23 5 0.25
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTTATCTTATTTTATTTATTA
Found at i:73650012 original size:15 final size:15
Alignment explanation
Indices: 73649992--73650020 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73649982 ATTATTTTAT
73649992 CTTAATTATTTATTA
1 CTTAATTATTTATTA
73650007 CTTAATTATTTATT
1 CTTAATTATTTATT
73650021 TGATTTTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (15 bp):
CTTAATTATTTATTA
Found at i:73653474 original size:10 final size:10
Alignment explanation
Indices: 73653456--73653489 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
73653446 ATTTTAGAAT
*
73653456 TTATTTTTAA
1 TTATCTTTAA
73653466 TTATCTTTAA
1 TTATCTTTAA
*
73653476 TTATCTTTAT
1 TTATCTTTAA
73653486 TTAT
1 TTAT
73653490 TTGTGGTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:73654407 original size:8 final size:8
Alignment explanation
Indices: 73654394--73654422 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
73654384 TTTTGTTTAG
73654394 TATATTAT
1 TATATTAT
73654402 TATATTAT
1 TATATTAT
73654410 TATATTAT
1 TATATTAT
73654418 TATAT
1 TATAT
73654423 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:73654455 original size:5 final size:5
Alignment explanation
Indices: 73654445--73654477 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
73654435 TTATGTTTTA
73654445 ATTAT ATTAT ATTAT ATTAT ATTAT ATATAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT AT-TAT AT
73654478 AAACTAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:73655649 original size:15 final size:15
Alignment explanation
Indices: 73655626--73655675 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
73655616 TTTATTGAAT
73655626 TTATATTGATTCAAA
1 TTATATTGATTCAAA
* * *
73655641 TTATTTTGATTGAAT
1 TTATATTGATTCAAA
*
73655656 TTATATTGATT-GAA
1 TTATATTGATTCAAA
73655670 TTATAT
1 TTATAT
73655676 AATATATATG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
14 7 0.24
15 22 0.76
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (15 bp):
TTATATTGATTCAAA
Found at i:73656095 original size:21 final size:21
Alignment explanation
Indices: 73656071--73656155 Score: 107
Period size: 21 Copynumber: 4.0 Consensus size: 21
73656061 GTGTTGTATT
73656071 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
*
73656092 TCAGTCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
* *
73656113 TCAGGCACCTTGTGTGTCGTT
1 TCAGGCACCTCGTGTGTCGTA
* * **
73656134 TTAGGCACTTTATGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
73656155 T
1 T
73656156 ATTGATCAGG
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.14, C:0.24, G:0.26, T:0.36
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCGTA
Found at i:73656150 original size:42 final size:42
Alignment explanation
Indices: 73656047--73656155 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 42
73656037 GGCTTTATCG
* *
73656047 ATCAGGCATTTTATGTGTTGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
* * ** *
73656091 ATCAGTCACCTCGTGTGTCGTATCAGGCACCTTGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
* *
73656133 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
73656156 ATTGATCAGG
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 36 0.69
44 16 0.31
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.39
Consensus pattern (42 bp):
ATCAGGCACTTTATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:73658337 original size:24 final size:24
Alignment explanation
Indices: 73658310--73658356 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
73658300 CCTAAGCTCA
73658310 GAAAATGAAATTTATGCAATTTAG
1 GAAAATGAAATTTATGCAATTTAG
73658334 GAAAATGAAATTTATGCAATTTA
1 GAAAATGAAATTTATGCAATTTA
73658357 CTCCTTATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.04, G:0.15, T:0.34
Consensus pattern (24 bp):
GAAAATGAAATTTATGCAATTTAG
Found at i:73658420 original size:35 final size:35
Alignment explanation
Indices: 73658374--73658444 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
73658364 TTCCAAGCCT
73658374 AACCAAAATCCCATTACAACATTTATAGCACATGC
1 AACCAAAATCCCATTACAACATTTATAGCACATGC
73658409 AACCAAAATCCCATTACAACATTTATAGCACATGC
1 AACCAAAATCCCATTACAACATTTATAGCACATGC
73658444 A
1 A
73658445 TTCATAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.44, C:0.28, G:0.06, T:0.23
Consensus pattern (35 bp):
AACCAAAATCCCATTACAACATTTATAGCACATGC
Found at i:73658470 original size:20 final size:20
Alignment explanation
Indices: 73658445--73658486 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
73658435 AGCACATGCA
73658445 TTCATAAAATTTCAGAATTT
1 TTCATAAAATTTCAGAATTT
73658465 TTCATAAAATTTCAGAATTT
1 TTCATAAAATTTCAGAATTT
73658485 TT
1 TT
73658487 AACCAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.48
Consensus pattern (20 bp):
TTCATAAAATTTCAGAATTT
Found at i:73658494 original size:20 final size:20
Alignment explanation
Indices: 73658450--73658498 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
73658440 ATGCATTCAT
* *
73658450 AAAATTTCAGAATTTTTCAT
1 AAAATTTCAGAATTTTTAAC
73658470 AAAATTTCAGAATTTTTAAC
1 AAAATTTCAGAATTTTTAAC
*
73658490 CAAATTTCA
1 AAAATTTCA
73658499 CAACTTTACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.43, C:0.12, G:0.04, T:0.41
Consensus pattern (20 bp):
AAAATTTCAGAATTTTTAAC
Found at i:73660158 original size:5 final size:5
Alignment explanation
Indices: 73660148--73660191 Score: 63
Period size: 5 Copynumber: 9.0 Consensus size: 5
73660138 AACATTAACA
* *
73660148 TTATT TTATT TTATT TTATT TTATT TTATA TT-TT ATATT TTATT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT
73660192 ATTTAATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 2 0.06
5 32 0.94
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:73660182 original size:22 final size:22
Alignment explanation
Indices: 73660147--73660200 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
73660137 TAACATTAAC
73660147 ATTATTT--TATTTTAT-TTTAT
1 ATTATTTAATATTTTATATTT-T
* *
73660167 TTTATTTTATATTTTATATTTT
1 ATTATTTAATATTTTATATTTT
73660189 ATTATTTAATAT
1 ATTATTTAATAT
73660201 AAGTATGGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 6 0.21
22 19 0.68
23 3 0.11
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (22 bp):
ATTATTTAATATTTTATATTTT
Found at i:73660567 original size:2 final size:2
Alignment explanation
Indices: 73660560--73660591 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
73660550 TAGCTGCTTA
73660560 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
73660592 ATATATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:73667196 original size:24 final size:23
Alignment explanation
Indices: 73667169--73667223 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
73667159 AAATAGCAAG
*
73667169 TAAATAA-GAAAATAAAATAAAAAT
1 TAAATAATGAAAAT--AATAAAAAA
*
73667193 TAAAGAGATGAAAATAATAAAAAA
1 TAAATA-ATGAAAATAATAAAAAA
73667217 TAAATAA
1 TAAATAA
73667224 ATAAACACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
23 1 0.04
24 18 0.69
25 1 0.04
26 6 0.23
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (23 bp):
TAAATAATGAAAATAATAAAAAA
Found at i:73667587 original size:12 final size:12
Alignment explanation
Indices: 73667570--73667595 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73667560 GAAGAAGGCC
73667570 AAGAAAAAACAA
1 AAGAAAAAACAA
73667582 AAGAAAAAACAA
1 AAGAAAAAACAA
73667594 AA
1 AA
73667596 CAACGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (12 bp):
AAGAAAAAACAA
Found at i:73668311 original size:21 final size:21
Alignment explanation
Indices: 73668287--73668332 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
73668277 ACATTTCTTC
73668287 CAAATTTCTCAAAAAATCTCT
1 CAAATTTCTCAAAAAATCTCT
* *
73668308 CAAATTTCTCTATAAATCTCT
1 CAAATTTCTCAAAAAATCTCT
73668329 CAAA
1 CAAA
73668333 GCTCTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (21 bp):
CAAATTTCTCAAAAAATCTCT
Found at i:73668536 original size:26 final size:24
Alignment explanation
Indices: 73668507--73668559 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
73668497 TTTAATATTA
*
73668507 TTTAATTATATTTTCATTTATGTAAT
1 TTTAATTA-ATTTTCATTT-TATAAT
*
73668533 TTTAATTAATTTTTATTTTATAAT
1 TTTAATTAATTTTCATTTTATAAT
73668557 TTT
1 TTT
73668560 TGTAACAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 8 0.32
25 9 0.36
26 8 0.32
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (24 bp):
TTTAATTAATTTTCATTTTATAAT
Found at i:73673370 original size:126 final size:125
Alignment explanation
Indices: 73673089--73673482 Score: 551
Period size: 126 Copynumber: 3.1 Consensus size: 125
73673079 GGCCAGACAT
73673089 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * * * * *
73673154 CTGCTTAAAGTGTTTTTGATACTATTTTTTCAAAACTGGCTTCTC-AAATTATTTTTTTAG
66 CTGCTTGAAGTGTTTTTGA-ACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
* * *
73673214 GAACTACTGTAGAAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTACATT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* *
73673279 CTGCTTGAAGTGTTTTTGAAGCTATTTTTTCAGAACCATCTTTTCAAAATTATTTTTTCAA
66 CTGCTTGAAGTGTTTTTGAA-CTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
* * *
73673340 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGTAATTTTGCTGATAATGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * * * *
73673405 CTGTTTGAAGCGTTTTTG-ACATTTTCTTTTCAGAACCGTCTTCTCAAAATTAATTTTTC-T
66 CTGCTTGAAGTGTTTTTGAAC-TATT-TTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
73673465 GAAACTACTGTAGAAAAA
1 G-AACTACTGTAGAAAAA
73673483 AAAAAACAAA
Statistics
Matches: 240, Mismatches: 24, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
124 2 0.01
125 104 0.43
126 134 0.56
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (125 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
CTGCTTGAAGTGTTTTTGAACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAA
Found at i:73673583 original size:34 final size:33
Alignment explanation
Indices: 73673541--73673650 Score: 121
Period size: 34 Copynumber: 3.3 Consensus size: 33
73673531 CTAAACACAA
* *
73673541 AATTATTTTTTTAAAAAAACTGAACCCTAATTT
1 AATTATTTTTTTAAAAAAACTAAAACCTAATTT
* * *
73673574 AATTAATTTTTTAAAAAACTCTAAATCCTAATTT
1 AATTATTTTTTTAAAAAA-ACTAAAACCTAATTT
* ***
73673608 AATTAATTTTCTTAAAACCCCTAAAACCTAATTT
1 AATT-ATTTTTTTAAAAAAACTAAAACCTAATTT
73673642 AATTATTTT
1 AATTATTTT
73673651 AAAAAAACTC
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
33 22 0.34
34 33 0.51
35 10 0.15
ACGTcount: A:0.42, C:0.14, G:0.01, T:0.44
Consensus pattern (33 bp):
AATTATTTTTTTAAAAAAACTAAAACCTAATTT
Found at i:73683231 original size:6 final size:6
Alignment explanation
Indices: 73683222--73683262 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
73683212 TCATCCTTAG
* *
73683222 TTTAAT TTTAAT TTTAAT TTCAAT TTCAAT TTT-AT TTTAAT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT
73683263 AGGTTGTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (6 bp):
TTTAAT
Found at i:73704393 original size:43 final size:41
Alignment explanation
Indices: 73704344--73704486 Score: 128
Period size: 43 Copynumber: 3.4 Consensus size: 41
73704334 TAAGGGCACA
* *
73704344 TCTGGGACGTTGGCATCGGTATGTGATTATGTGTAAGACAATG
1 TCTGGGACGTTGGCATCGATATGTGATTA--TGTAAGACCATG
* * * * *
73704387 TTTGGGACATTAGCATC-ATATTTGATTCATGTAAGACCCTG
1 TCTGGGACGTTGGCATCGATATGTGATT-ATGTAAGACCATG
* * *
73704428 TCTGAGACAG-TGGCATCGATATGTGATGACATGTAAGACCACG
1 TCTGGGAC-GTTGGCATCGATATGTGAT--TATGTAAGACCATG
73704471 TCTGGGACGTTGGCAT
1 TCTGGGACGTTGGCAT
73704487 TGTACGATAT
Statistics
Matches: 78, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
41 22 0.28
42 17 0.22
43 39 0.50
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (41 bp):
TCTGGGACGTTGGCATCGATATGTGATTATGTAAGACCATG
Found at i:73705487 original size:24 final size:24
Alignment explanation
Indices: 73705460--73705507 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
73705450 TTTAATATAA
73705460 GGCATGTATGTGGTAGTGTTTGAT
1 GGCATGTATGTGGTAGTGTTTGAT
73705484 GGCATGTATGTGGTAGTGTTTGAT
1 GGCATGTATGTGGTAGTGTTTGAT
73705508 CACATGATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.04, G:0.38, T:0.42
Consensus pattern (24 bp):
GGCATGTATGTGGTAGTGTTTGAT
Found at i:73705513 original size:24 final size:24
Alignment explanation
Indices: 73705462--73705513 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
73705452 TAATATAAGG
**
73705462 CATGTATGTGGTAGTGTTTGATGG
1 CATGTATGTGGTAGTGTTTGATCA
73705486 CATGTATGTGGTAGTGTTTGATCA
1 CATGTATGTGGTAGTGTTTGATCA
73705510 CATG
1 CATG
73705514 ATTCGACAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.19, C:0.08, G:0.33, T:0.40
Consensus pattern (24 bp):
CATGTATGTGGTAGTGTTTGATCA
Found at i:73705944 original size:2 final size:2
Alignment explanation
Indices: 73705937--73705969 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
73705927 TATTTTGTAT
73705937 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73705970 GATTAATCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73708808 original size:46 final size:47
Alignment explanation
Indices: 73708664--73709026 Score: 162
Period size: 46 Copynumber: 7.7 Consensus size: 47
73708654 TTTGTGCGCT
* * * *
73708664 AGTGTAAGA-CATGTCTGAGACATGCATCGGCCAT--ATTATG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATTGGCC-TCGA-GATGTA-AGCC
* * * * * * * *
73708710 AGTATAAGACCATGTATGAGACATTGCATTGACATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACA-TGCATTGGCCTCGAGATGTA-AGCC
*
73708758 AGTGTAAGA-CATGTTTGGGACATGCATTGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGAGATGTAAGCC
* * * *
73708804 AGTGTAAGA-CATGTCTGGAACATGCA-TCGACTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATTGGCCT-CGAGATGTAAGCC
* * * *
73708848 AGTGTAAGACCATGTCTGGGACATGGCATCGACAC-GGAGATGTGAGAGCA
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGC-CTCGAGATGT-A-AGCC
* ** * * * *
73708898 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCTA-TTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGCCTCGAGATGT-A-AGCC
* * * *
73708947 AGTGTAAGACCATGTCTGGGACACGGCA-TCGACTTGATGGATG--AGCC
1 AGTGTAAGACCATGTCTGGGACA-TGCATTGGCCTCGA--GATGTAAGCC
* *
73708994 AGTGCAAGACCATGTCTGGGACGTGGCATTGGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGC
73709027 ATTACACCTT
Statistics
Matches: 243, Mismatches: 53, Indels: 40
0.72 0.16 0.12
Matches are distributed among these distances:
44 11 0.05
45 17 0.07
46 67 0.28
47 52 0.21
48 30 0.12
49 33 0.14
50 32 0.13
51 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATTGGCCTCGAGATGTAAGCC
Found at i:73708957 original size:99 final size:96
Alignment explanation
Indices: 73708845--73709020 Score: 255
Period size: 96 Copynumber: 1.8 Consensus size: 96
73708835 TACGAGATGT
* *
73708845 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGAGATGTGA-GAGCAAGTGTAAGACC
1 GTCAGTGTAAGACCATGTCTGGGACACGGCATCG--AC-GAGATG-GATGAGCAAGTGCAAGACC
73708909 ATGTCTGGGACATGGCGTCAGCCTCTATTTTGATA
62 ATGTCTGGGACATGGCGTCAGCCTCTATTTTGATA
** *
73708944 GTCAGTGTAAGACCATGTCTGGGACACGGCATCGACTTGATGGATGAGCCAGTGCAAGACCATGT
1 GTCAGTGTAAGACCATGTCTGGGACACGGCATCGACGAGATGGATGAGCAAGTGCAAGACCATGT
*
73709009 CTGGGACGTGGC
66 CTGGGACATGGC
73709021 ATTGGCATTA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
95 2 0.03
96 33 0.47
97 2 0.03
99 33 0.47
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (96 bp):
GTCAGTGTAAGACCATGTCTGGGACACGGCATCGACGAGATGGATGAGCAAGTGCAAGACCATGT
CTGGGACATGGCGTCAGCCTCTATTTTGATA
Found at i:73711090 original size:18 final size:18
Alignment explanation
Indices: 73711067--73711103 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
73711057 GCTCAGAAGT
73711067 ATGTGAGAAAGGGTTGTG
1 ATGTGAGAAAGGGTTGTG
73711085 ATGTGAGAAAGGGTTGTG
1 ATGTGAGAAAGGGTTGTG
73711103 A
1 A
73711104 AGCTTACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.43, T:0.27
Consensus pattern (18 bp):
ATGTGAGAAAGGGTTGTG
Found at i:73715737 original size:29 final size:29
Alignment explanation
Indices: 73715635--73715736 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
73715625 GTGACGAGAT
73715635 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
73715664 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
73715693 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
73715722 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
73715737 GGGTTTAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 61 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:73715793 original size:28 final size:28
Alignment explanation
Indices: 73715724--73715824 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
73715714 GAAGGGTATG
* * * *
73715724 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
73715754 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73715782 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
73715811 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
73715825 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73718471 original size:43 final size:43
Alignment explanation
Indices: 73718424--73718576 Score: 183
Period size: 43 Copynumber: 3.6 Consensus size: 43
73718414 TGTTCTCATA
73718424 TAAGACCACT-TCTGGGACGTTGGCATCGATATGTGATTACGTG
1 TAAGACCACTGTCTGGGACGTTGGCATCGATATGTGATT-CGTG
* *
73718467 TAAGACCA-TGTCTGGGACATTGGCATCG-TATTTGATTCGTG
1 TAAGACCACTGTCTGGGACGTTGGCATCGATATGTGATTCGTG
* * * *
73718508 TAAGACC-CTGTCTCGGATAG-TGGCATCGATATGTGATGGCATG
1 TAAGACCACTGTCTGGGA-CGTTGGCATCGATATGTGAT-TCGTG
73718551 TAAGACCAC-GTCTGGGACGTTGGCAT
1 TAAGACCACTGTCTGGGACGTTGGCAT
73718577 TGTATGATAT
Statistics
Matches: 93, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
41 27 0.29
42 17 0.18
43 48 0.52
44 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (43 bp):
TAAGACCACTGTCTGGGACGTTGGCATCGATATGTGATTCGTG
Found at i:73719575 original size:24 final size:24
Alignment explanation
Indices: 73719548--73719597 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
73719538 AATTTAATAT
*
73719548 ATGGCATGTATGTGGTAGTGTTTG
1 ATGGAATGTATGTGGTAGTGTTTG
73719572 ATGGAATGTATGTGGTAGTGTTTG
1 ATGGAATGTATGTGGTAGTGTTTG
73719596 AT
1 AT
73719598 CATATGATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.02, G:0.36, T:0.42
Consensus pattern (24 bp):
ATGGAATGTATGTGGTAGTGTTTG
Found at i:73722299 original size:41 final size:40
Alignment explanation
Indices: 73722218--73722309 Score: 116
Period size: 41 Copynumber: 2.3 Consensus size: 40
73722208 TACATTTTTG
* * *
73722218 ACCTTTTCATTTATATCCTTTTTGGATAATATTCTCTTCA
1 ACCTTTTCATTTATATCCTTTTCGGATAAAAATCTCTTCA
73722258 ACCTTTTCATTTGATATCCTTTTCGGA-AAAACATCAT-TTCA
1 ACCTTTTCATTT-ATATCCTTTTCGGATAAAA-ATC-TCTTCA
73722299 ACCTTTTCATT
1 ACCTTTTCATT
73722310 GATTCGAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
40 15 0.33
41 30 0.65
42 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.05, T:0.48
Consensus pattern (40 bp):
ACCTTTTCATTTATATCCTTTTCGGATAAAAATCTCTTCA
Found at i:73723997 original size:18 final size:18
Alignment explanation
Indices: 73723971--73724009 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
73723961 TCAAGTAAAA
*
73723971 TTTAAATATTTTTTTAAT
1 TTTAAATATTATTTTAAT
*
73723989 TTTATATATTATTTTAAT
1 TTTAAATATTATTTTAAT
73724007 TTT
1 TTT
73724010 TAAAATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTAAATATTATTTTAAT
Found at i:73724038 original size:22 final size:24
Alignment explanation
Indices: 73724007--73724054 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
73723997 TTATTTTAAT
73724007 TTTTAAAATT-TATA-ATAATATA
1 TTTTAAAATTATATATATAATATA
* *
73724029 TTTTAGAATTATATATATTATATA
1 TTTTAAAATTATATATATAATATA
73724053 TT
1 TT
73724055 ATATATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 9 0.41
23 4 0.18
24 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
TTTTAAAATTATATATATAATATA
Found at i:73729420 original size:29 final size:29
Alignment explanation
Indices: 73729285--73729475 Score: 192
Period size: 29 Copynumber: 6.6 Consensus size: 29
73729275 GTGACGAGAT
*
73729285 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
73729314 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTGGAAATATA
* *
73729343 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
73729372 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** ***
73729401 CGGCACTGGGTGTGCGAGCTCGG-AGGGTA
1 TGGCACTAAGTGTGCGAGCT-GGAAATATA
** *
73729430 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
73729457 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
73729476 AATCGAGTAG
Statistics
Matches: 135, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
27 2 0.01
28 1 0.01
29 130 0.96
30 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:73731068 original size:2 final size:2
Alignment explanation
Indices: 73731061--73731091 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
73731051 CTAATGTCTA
73731061 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73731092 AGGGTTAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73731633 original size:40 final size:40
Alignment explanation
Indices: 73731552--73731734 Score: 280
Period size: 40 Copynumber: 4.6 Consensus size: 40
73731542 TATTCAGATG
* *
73731552 ATATCCGAGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
73731593 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
73731633 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
73731673 ATATCCGGGCTAAGACCCGAAAGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
73731713 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
73731735 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
39 13 0.10
40 95 0.71
41 25 0.19
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:73739763 original size:53 final size:54
Alignment explanation
Indices: 73739683--73739820 Score: 172
Period size: 53 Copynumber: 2.6 Consensus size: 54
73739673 TTTTAAACTT
* * * * *
73739683 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTA-TGTACTC
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTAGAGTAATC
* * *
73739736 ACCAATGCCATGCCTTGGCACGATCTTACATGGGACCTTTGCCTTAGAGTAATC
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTAGAGTAATC
*
73739790 ATCAATGCCATGCCTTGACATGGTCTTACAT
1 ACCAATGCCATGCCTTGACATGGTCTTACAT
73739821 TATTTCCTTA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
52 2 0.03
53 37 0.52
54 32 0.45
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (54 bp):
ACCAATGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTAGAGTAATC
Found at i:73739906 original size:47 final size:47
Alignment explanation
Indices: 73739855--73739976 Score: 183
Period size: 47 Copynumber: 2.6 Consensus size: 47
73739845 CATGCATTTG
* * *
73739855 CATGGTCTGACATGATATCCTTCTCTTACCAAATGTCATATTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATATTCCAAA
*
73739902 CATGGTCTTACAT-AGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGA-TATCCTTGTCTTACCAAATGCCATATTCCAAA
*
73739949 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTGTCTTA
73739977 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
46 1 0.01
47 67 0.99
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATATTCCAAA
Found at i:73740151 original size:54 final size:53
Alignment explanation
Indices: 73740084--73740256 Score: 130
Period size: 54 Copynumber: 3.3 Consensus size: 53
73740074 AATGCTATGT
*
73740084 CTTGACATCGTCTTACATGATTTCTTTGCCTTATAGAACTTATCAATGCCATAC
1 CTTGACATGGTCTTACATGA-TTCTTTGCCTTATAGAACTTATCAATGCCATAC
* * * * *
73740138 CTTGGCATGGTCTTACATGA---TAT-CCTTAT----CTGACCAAATGCCATGTTC
1 CTTGACATGGTCTTACATGATTCTTTGCCTTATAGAACTTATC-AATGCCA--TAC
* * * * *
73740186 CAT-ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGC
1 CTTGACATGGTCTTACATGAT-TCTTTGCCTTATAGAACTTATCAATGCCATAC
*
73740239 CTTGGCATGGTCTTACAT
1 CTTGACATGGTCTTACAT
73740257 AATATCCTTA
Statistics
Matches: 89, Mismatches: 17, Indels: 26
0.67 0.13 0.20
Matches are distributed among these distances:
45 4 0.04
46 7 0.08
47 14 0.16
48 4 0.04
49 6 0.07
50 2 0.02
51 1 0.01
52 5 0.06
53 4 0.04
54 31 0.35
55 7 0.08
56 4 0.04
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (53 bp):
CTTGACATGGTCTTACATGATTCTTTGCCTTATAGAACTTATCAATGCCATAC
Found at i:73740197 original size:47 final size:47
Alignment explanation
Indices: 73740143--73740312 Score: 164
Period size: 47 Copynumber: 3.5 Consensus size: 47
73740133 CATACCTTGG
73740143 CATGGTCTTACATGATATCCTTATCTGACCAAATGCCATGTTCCATA
1 CATGGTCTTACATGATATCCTTATCTGACCAAATGCCATGTTCCATA
* * * * *
73740190 CATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATG--CCTTGG
1 CATGGTCTTACATGATATCCTTATC---T-G-AC-CA--AATGCCATGTTCCAT-A
* * *
73740244 CATGGTCTTACATAATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTGACCAAATGCCATGTTCCATA
*
73740291 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGATATCCTT
73740313 GTCTTAGTGC
Statistics
Matches: 97, Mismatches: 15, Indels: 22
0.72 0.11 0.16
Matches are distributed among these distances:
46 9 0.09
47 43 0.44
48 3 0.03
49 2 0.02
50 1 0.01
51 2 0.02
52 2 0.02
53 4 0.04
54 22 0.23
55 9 0.09
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTGACCAAATGCCATGTTCCATA
Found at i:73740230 original size:101 final size:101
Alignment explanation
Indices: 73740088--73740318 Score: 381
Period size: 101 Copynumber: 2.3 Consensus size: 101
73740078 CTATGTCTTG
* * * * *
73740088 ACATCGTCTTACATGATTTCTTTGCCTTATAGAACTTATCAATGCCATACCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATACCTTGGCATGGTCTTA
* *
73740153 CATGATATCCTTATCTGACCAAATGCCATGTTCCAT
66 CATAATATCCTTATCTGACCAAATGCCATGTTCCAA
*
73740189 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATACCTTGGCATGGTCTTA
*
73740254 CATAATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATAATATCCTTATCTGACCAAATGCCATGTTCCAA
73740290 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTA
73740319 GTGCCAATGC
Statistics
Matches: 121, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 121 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.37
Consensus pattern (101 bp):
ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATACCTTGGCATGGTCTTA
CATAATATCCTTATCTGACCAAATGCCATGTTCCAA
Found at i:73741082 original size:30 final size:30
Alignment explanation
Indices: 73741048--73741108 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
73741038 TCCCTAACTC
73741048 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * *
73741078 AAACTTTTGCAGAATTACGATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
73741108 A
1 A
73741109 GGCTCAGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:73745786 original size:20 final size:20
Alignment explanation
Indices: 73745761--73745811 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
73745751 TTTAAGAGCC
*
73745761 ACACGCTCGTGTAGCTTGGG
1 ACACGCCCGTGTAGCTTGGG
*
73745781 ACACGCCCATGTAGCTTGGG
1 ACACGCCCGTGTAGCTTGGG
73745801 ACACGCCCGTG
1 ACACGCCCGTG
73745812 CCCCTAACCC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (20 bp):
ACACGCCCGTGTAGCTTGGG
Found at i:73746971 original size:43 final size:42
Alignment explanation
Indices: 73746901--73747061 Score: 171
Period size: 42 Copynumber: 3.8 Consensus size: 42
73746891 CACACGGTAC
* * *
73746901 CATATCAATGCCATATCCCAGATATGGTCTTACATGTAATCT
1 CATATCAATACCATAGCCCAGATATGGTCTTACATGAAATCT
* * *
73746943 CATATCGATACCAATAGCCTAGCTATGGTCTTACATGAAATCT
1 CATATCAATACC-ATAGCCCAGATATGGTCTTACATGAAATCT
* * * *
73746986 CATATCAATTCCATATCCCAGATATGGTCTTACACGAAGTCT
1 CATATCAATACCATAGCCCAGATATGGTCTTACATGAAATCT
* ** *
73747028 CGTATTC-ATGTCATATCCCAGATATGGTCTTACA
1 CATA-TCAATACCATAGCCCAGATATGGTCTTACA
73747062 CATAGTCTTA
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
42 63 0.62
43 38 0.38
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.32
Consensus pattern (42 bp):
CATATCAATACCATAGCCCAGATATGGTCTTACATGAAATCT
Found at i:73751894 original size:123 final size:123
Alignment explanation
Indices: 73751675--73752013 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
73751665 GAATTATGTG
73751675 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
73751740 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
73751798 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
73751863 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
73751921 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
73751986 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
73752014 AATTATATCC
Statistics
Matches: 208, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 208 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:73752037 original size:40 final size:40
Alignment explanation
Indices: 73751982--73752225 Score: 283
Period size: 40 Copynumber: 6.1 Consensus size: 40
73751972 TGAATGATAC
* * * * **
73751982 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
73752022 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
* *
73752062 CCGGGCTAATAACCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
73752102 CCAGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
73752142 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
73752182 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
73752222 CCGG
1 CCGG
73752226 TTGTATTCCG
Statistics
Matches: 178, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
40 176 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:73754513 original size:40 final size:39
Alignment explanation
Indices: 73754455--73754540 Score: 129
Period size: 40 Copynumber: 2.2 Consensus size: 39
73754445 TTTATATATA
*
73754455 TAGCCGAAGCTATCTCAAATTGCACAAC-AAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAATCGCAC-ACTAAGTGCCA-TTT
*
73754495 TAGCCGAAGCTATTTCAAATCGCACACTAAGTGCCATTT
1 TAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATTT
73754534 TAGCCGA
1 TAGCCGA
73754541 TAAGTCGTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 12 0.28
40 31 0.72
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCATTT
Found at i:73761681 original size:2 final size:2
Alignment explanation
Indices: 73761674--73761699 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
73761664 TTTGGTTATG
73761674 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
73761700 CATAAGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:73762184 original size:24 final size:24
Alignment explanation
Indices: 73762152--73762214 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
73762142 AATCTCAAAT
73762152 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
73762176 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
73762200 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
73762215 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:73765312 original size:131 final size:130
Alignment explanation
Indices: 73765021--73765313 Score: 304
Period size: 131 Copynumber: 2.2 Consensus size: 130
73765011 CTTTATTTAA
* ** * * ** *
73765021 CATGAACAATTTTATTTGATTTAGTTGATTTAAGATCGTAACTTCGAACAGCTTGCTGATTTAAG
1 CATGAACAATTTTA-TTGAGTTAGTTGATTTAAGATCACAACTCCGAACAACTCACTAATTTAAG
* * * * ** *
73765086 ATCACGACTGATATTATTAAGTTTCATTATTTTAATATCTCAACCTAAGTTCATTTGATTTTAGA
65 ATCACAAATGATATTATTAAGGTTCATTATTTTAAAATCTCAACCTAAGTTCATTCAATTTAAGA
73765151 T
130 T
* * *
73765152 CATGAAGAATTCATT-TTGAGTTAGCTGATTTAAGATCACAACTCCGAACAACTCATTAATTTAA
1 CATGAACAATT--TTATTGAGTTAGTTGATTTAAGATCACAACTCCGAACAACTCACTAATTTAA
* * * *
73765216 GATCGCAAATGATATTGTTAAGGTTCATTGA-TTTAAAAT-TGTAGCCTAAGTTCATTCAATTTA
64 GATCACAAATGATATTATTAAGGTTCATT-ATTTTAAAATCT-CAACCTAAGTTCATTCAATTTA
73765279 AGAT
127 AGAT
*
73765283 CATGAACAATTTTATTGGAGTTAATTGATTT
1 CATGAACAATTTTATT-GAGTTAGTTGATTT
73765314 CACAACCTTT
Statistics
Matches: 131, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
129 2 0.02
130 3 0.02
131 123 0.94
132 1 0.01
133 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (130 bp):
CATGAACAATTTTATTGAGTTAGTTGATTTAAGATCACAACTCCGAACAACTCACTAATTTAAGA
TCACAAATGATATTATTAAGGTTCATTATTTTAAAATCTCAACCTAAGTTCATTCAATTTAAGAT
Found at i:73766928 original size:36 final size:36
Alignment explanation
Indices: 73766881--73766951 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
73766871 TGGACAAGGC
73766881 TTTAATTTACAAAAACTATAAAAATAATTTTTAGGG
1 TTTAATTTACAAAAACTATAAAAATAATTTTTAGGG
73766917 TTTAATTTACAAAAACTATAAAAATAATTTTTAGG
1 TTTAATTTACAAAAACTATAAAAATAATTTTTAGG
73766952 TTCTTCTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.48, C:0.06, G:0.07, T:0.39
Consensus pattern (36 bp):
TTTAATTTACAAAAACTATAAAAATAATTTTTAGGG
Found at i:73768989 original size:6 final size:6
Alignment explanation
Indices: 73768978--73769007 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
73768968 TATTTTTATA
73768978 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
73769008 ATCTTTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTCTT
Found at i:73769021 original size:18 final size:18
Alignment explanation
Indices: 73768973--73769023 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
73768963 AACAGTATTT
* *
73768973 TTATATTTCTTTTTCTT-
1 TTATCTTTCTTTTTTTTC
*
73768990 TT-TCTTT-TTCTTTTTC
1 TTATCTTTCTTTTTTTTC
73769006 TTATCTTTCTTTTTTTTC
1 TTATCTTTCTTTTTTTTC
73769024 AGTTATTTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
15 6 0.22
16 6 0.22
17 7 0.26
18 8 0.30
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (18 bp):
TTATCTTTCTTTTTTTTC
Found at i:73769471 original size:11 final size:11
Alignment explanation
Indices: 73769455--73769479 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73769445 GGAAGAATAA
73769455 AATATCGATTC
1 AATATCGATTC
73769466 AATATCGATTC
1 AATATCGATTC
73769477 AAT
1 AAT
73769480 GGAGAGTCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (11 bp):
AATATCGATTC
Found at i:73769801 original size:26 final size:27
Alignment explanation
Indices: 73769779--73769841 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
73769769 GATTTTAGGG
*
73769779 AAAAAA-T-TTGTATTCCATTTTTATA
1 AAAAAATTATTGTATTCCATTTTTAGA
*
73769804 AAAAAATTAATTGTATTCCATTTTTATCA
1 AAAAAATT-ATTGTATTCCATTTTTA-GA
73769833 AAAAAATTA
1 AAAAAATTA
73769842 ACTTTTCCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
25 6 0.18
26 1 0.03
28 17 0.52
29 9 0.27
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (27 bp):
AAAAAATTATTGTATTCCATTTTTAGA
Found at i:73769824 original size:28 final size:29
Alignment explanation
Indices: 73769786--73769842 Score: 107
Period size: 28 Copynumber: 2.0 Consensus size: 29
73769776 GGGAAAAAAT
73769786 TTGTATTCCATTTTTAT-AAAAAAATTAA
1 TTGTATTCCATTTTTATCAAAAAAATTAA
73769814 TTGTATTCCATTTTTATCAAAAAAATTAA
1 TTGTATTCCATTTTTATCAAAAAAATTAA
73769843 CTTTTCCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 17 0.61
29 11 0.39
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.46
Consensus pattern (29 bp):
TTGTATTCCATTTTTATCAAAAAAATTAA
Found at i:73775279 original size:48 final size:48
Alignment explanation
Indices: 73775208--73775336 Score: 188
Period size: 48 Copynumber: 2.7 Consensus size: 48
73775198 TACCACGATT
* *
73775208 ATACATGTAATGTGGTGCAAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
73775256 ATACATGTAACGTGGTGTTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
*
73775304 ATTCAT-TAACGTGGTGCTAAGTGGATATACCAC
1 ATACATGTAACGTGGTGCTAAGTGGATATACCAC
73775337 AGTTAAACAT
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 25 0.35
48 47 0.65
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:73789245 original size:40 final size:40
Alignment explanation
Indices: 73789093--73789260 Score: 246
Period size: 40 Copynumber: 4.2 Consensus size: 40
73789083 CAATTGAATG
*
73789093 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* *
73789133 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
73789173 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * *
73789213 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
73789253 ATATCCGG
1 ATATCCGG
73789261 TCGTATTCCG
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 116 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:73799754 original size:40 final size:40
Alignment explanation
Indices: 73799709--73799876 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73799699 CGGAATACAA
73799709 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
73799749 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
73799789 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
73799829 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
73799869 CCGGATAT
1 CCGGATAT
73799877 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:73801602 original size:24 final size:24
Alignment explanation
Indices: 73801574--73801655 Score: 155
Period size: 24 Copynumber: 3.4 Consensus size: 24
73801564 GGCTGTCACA
*
73801574 AAGCCCTTTTGATAACTAGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
73801598 AAGCCCTTTTGATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
73801622 AAGCCCTTTTGATAACTGGGGCAT
1 AAGCCCTTTTGATAACTGGGGCAT
73801646 AAGCCCTTTT
1 AAGCCCTTTT
73801656 TCACTTCCTC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AAGCCCTTTTGATAACTGGGGCAT
Found at i:73801730 original size:20 final size:20
Alignment explanation
Indices: 73801705--73801765 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
73801695 TTATGATTAC
73801705 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
73801725 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
73801745 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
73801765 A
1 A
73801766 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73801840 original size:25 final size:25
Alignment explanation
Indices: 73801808--73801855 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73801798 ATACATAAAC
* * *
73801808 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
73801833 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
73801856 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:73809399 original size:31 final size:31
Alignment explanation
Indices: 73809364--73809427 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73809354 CCTTTTCATG
73809364 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
73809395 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
73809426 TT
1 TT
73809428 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:73809698 original size:23 final size:24
Alignment explanation
Indices: 73809619--73809784 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
73809609 GCTTTATCAT
* *
73809619 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
73809644 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
73809668 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
73809691 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
73809715 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
73809738 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
73809762 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73809785 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 75 0.56
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:73809698 original size:47 final size:48
Alignment explanation
Indices: 73809619--73809784 Score: 248
Period size: 47 Copynumber: 3.5 Consensus size: 48
73809609 GCTTTATCAT
* * **
73809619 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTG
73809668 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
*
73809715 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
73809762 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73809785 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
46 16 0.15
47 57 0.52
48 25 0.23
49 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:73809856 original size:20 final size:20
Alignment explanation
Indices: 73809833--73809893 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
73809823 TTATGATTAC
73809833 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
73809853 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
73809873 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
73809893 A
1 A
73809894 CCACATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73817818 original size:46 final size:44
Alignment explanation
Indices: 73817724--73817895 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 44
73817714 ATCTCGTAGT
* * * * *
73817724 CGATGCATGTCCCAGGCATGTCTTACACTGGCTTACGTATCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCCT-CGT-TCAAAGC
73817770 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-CTCGT-TCAAAGC
* * * *
73817816 CGATGCCATGTCCCAGACATGGCCTTACACAAGCTCTAG-T-AAAGTGTT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGC-CTCGTTCAAA--G-C
*
73817864 CGATGCATGTCCCAAACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
73817896 TCACAATAAC
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 3 0.03
46 55 0.52
47 29 0.27
48 19 0.18
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCCTCGTTCAAAGC
Found at i:73818272 original size:30 final size:30
Alignment explanation
Indices: 73818232--73818289 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
73818222 AAATTCATAT
* *
73818232 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGATAAAATGACCATTTTACCCCTAGA
73818262 CTTTGATAAAATGACCATTTTACCCCTA
1 CTTTGATAAAATGACCATTTTACCCCTA
73818290 TCCCCGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (30 bp):
CTTTGATAAAATGACCATTTTACCCCTAGA
Found at i:73822292 original size:26 final size:22
Alignment explanation
Indices: 73822205--73822292 Score: 68
Period size: 23 Copynumber: 3.7 Consensus size: 22
73822195 TAATGGACAA
* * *
73822205 TAAGCTCTATTGAGCTAAAATAG
1 TAAGCTCTA-CGAGCTGAATTAG
*
73822228 TAAGCTCTAACGAGTTGAATTAG
1 TAAGCTCT-ACGAGCTGAATTAG
*
73822251 TAAGCTCTTACAAGCTGATATATCAG
1 TAAGCTC-TACGAGCTGA-AT-T-AG
73822277 TAAGCTCATACGAGCT
1 TAAGCTC-TACGAGCT
73822293 ATGGTGAGTC
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
23 31 0.60
24 4 0.08
25 1 0.02
26 16 0.31
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (22 bp):
TAAGCTCTACGAGCTGAATTAG
Found at i:73836074 original size:27 final size:27
Alignment explanation
Indices: 73835491--73836073 Score: 744
Period size: 27 Copynumber: 21.6 Consensus size: 27
73835481 AAAGTACTCC
73835491 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73835518 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
73835545 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73835572 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
73835599 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
73835626 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
73835653 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
73835680 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
73835707 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
73835734 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73835761 CGATTTATAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
73835788 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
73835815 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
73835842 C-AGTTTACAGAATTACTATTTTACCTT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
73835869 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
73835895 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
73835923 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
73835950 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73835977 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
73836004 CGATTTATAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73836031 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73836058 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
73836074 TAAAATACCC
Statistics
Matches: 491, Mismatches: 55, Indels: 20
0.87 0.10 0.04
Matches are distributed among these distances:
26 5 0.01
27 481 0.98
28 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:73837335 original size:25 final size:25
Alignment explanation
Indices: 73837306--73837353 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73837296 TTATAATATG
* * *
73837306 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
73837331 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
73837354 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:73837422 original size:20 final size:20
Alignment explanation
Indices: 73837397--73837455 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
73837387 TAAATATGGT
73837397 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
73837417 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
73837437 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
73837456 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:73837562 original size:24 final size:23
Alignment explanation
Indices: 73837506--73837672 Score: 228
Period size: 24 Copynumber: 7.0 Consensus size: 23
73837496 GAGGAAGTGA
*
73837506 AAAAGGGCTTATGCCCCAATTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
73837529 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
73837552 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
73837576 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
73837600 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
73837624 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
73837648 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73837672 A
1 A
73837673 TGATAAAGCA
Statistics
Matches: 132, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
23 43 0.33
24 79 0.60
25 10 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:73837604 original size:47 final size:46
Alignment explanation
Indices: 73837506--73837672 Score: 228
Period size: 47 Copynumber: 3.5 Consensus size: 46
73837496 GAGGAAGTGA
* *
73837506 AAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
73837552 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
* *
73837600 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTA-T
*
73837648 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
73837673 TGATAAAGCA
Statistics
Matches: 109, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
47 64 0.59
48 35 0.32
49 10 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:73837622 original size:71 final size:71
Alignment explanation
Indices: 73837506--73837672 Score: 246
Period size: 71 Copynumber: 2.3 Consensus size: 71
73837496 GAGGAAGTGA
* *
73837506 AAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
73837571 GTTATC
66 GTTATC
** *
73837577 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
73837642 GTTATT
66 GTTATC
*
73837648 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
73837673 TGATAAAGCA
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.86
72 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:73837926 original size:31 final size:31
Alignment explanation
Indices: 73837863--73837926 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
73837853 CGTTTACAGT
*
73837863 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
73837894 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
73837925 AA
1 AA
73837927 CATGAAAGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:73841191 original size:27 final size:27
Alignment explanation
Indices: 73840610--73841190 Score: 717
Period size: 27 Copynumber: 21.6 Consensus size: 27
73840600 AAAGTACTCC
73840610 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73840637 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
73840664 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73840691 TGATTTATAGAA-TACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
73840717 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73840744 CGATTTACAGAATAACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
73840771 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
73840798 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
73840825 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
73840852 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73840879 CGATTTATAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
73840906 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
73840933 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
73840960 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
73840987 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
73841013 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
73841041 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
73841068 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73841095 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73841122 -GATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
73841148 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
73841175 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
73841191 TAAAATACCC
Statistics
Matches: 488, Mismatches: 54, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
26 52 0.11
27 431 0.88
28 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:73841199 original size:27 final size:27
Alignment explanation
Indices: 73841142--73841201 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
73841132 ATTACTGTTT
* * ****
73841142 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
73841169 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
73841196 TACCCT
1 TACCCT
73841202 TGGTTTGTGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Done.