Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 237 of 433
Found at i:73841214 original size:27 final size:27
Alignment explanation
Indices: 73841183--73841254 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
73841173 CTCGATTTAC
* **
73841183 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
* **
73841210 GAAATTACCGCAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
*
73841237 AAAACTACCAAAATACCC
1 AAAATTACCAAAATACCC
73841255 CTGTATGGTA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAATTTGT
Found at i:73842453 original size:25 final size:25
Alignment explanation
Indices: 73842424--73842471 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73842414 TTATAATATG
* * *
73842424 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
73842449 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
73842472 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:73842540 original size:20 final size:20
Alignment explanation
Indices: 73842515--73842573 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
73842505 TAAATATGGT
73842515 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
73842535 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
73842555 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
73842574 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:73842680 original size:24 final size:23
Alignment explanation
Indices: 73842624--73842790 Score: 237
Period size: 24 Copynumber: 7.0 Consensus size: 23
73842614 GAGGAAGTGA
73842624 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
73842647 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
73842670 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
73842694 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
73842718 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
73842742 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
73842766 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73842790 A
1 A
73842791 TGATAAAGCA
Statistics
Matches: 133, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
23 44 0.33
24 79 0.59
25 10 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:73842693 original size:47 final size:46
Alignment explanation
Indices: 73842624--73842789 Score: 244
Period size: 47 Copynumber: 3.5 Consensus size: 46
73842614 GAGGAAGTGA
73842624 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
73842670 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
*
73842718 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTA-T
*
73842766 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73842790 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
47 66 0.60
48 33 0.30
49 11 0.10
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:73842740 original size:71 final size:71
Alignment explanation
Indices: 73842624--73842790 Score: 255
Period size: 71 Copynumber: 2.3 Consensus size: 71
73842614 GAGGAAGTGA
*
73842624 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
73842689 GTTATC
66 GTTATC
** *
73842695 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
73842760 GTTATT
66 GTTATC
*
73842766 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
73842791 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:73850045 original size:55 final size:55
Alignment explanation
Indices: 73849980--73850089 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
73849970 TTTAACAATT
73849980 GAAGCCACCTTCATTGACACAAACTCAATTCTTTCTGAGTCACTTGGTATTTCAA
1 GAAGCCACCTTCATTGACACAAACTCAATTCTTTCTGAGTCACTTGGTATTTCAA
73850035 GAAGCCACCTTCATTGACACAAACTCAATTCTTTCTGAGTCACTTGGTATTTCAA
1 GAAGCCACCTTCATTGACACAAACTCAATTCTTTCTGAGTCACTTGGTATTTCAA
73850090 ACTTTTATTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (55 bp):
GAAGCCACCTTCATTGACACAAACTCAATTCTTTCTGAGTCACTTGGTATTTCAA
Found at i:73853987 original size:57 final size:58
Alignment explanation
Indices: 73853926--73854034 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 58
73853916 TCCTGTTTCC
* *
73853926 AACATATGCTCATA-AGAGCTTA-ATCAGGATTACCCGTACGA-GCTAAATCCTATCTAT
1 AACATATGCTCA-AGAGAGCTTATATCACGATTACCAGT-CGAGGCTAAATCCTATCTAT
* *
73853983 AACATATGCTCAAGAGGGCTTATATCACGATTACCAGTCTAGGCTAAATCCT
1 AACATATGCTCAAGAGAGCTTATATCACGATTACCAGTCGAGGCTAAATCCT
73854035 TTTTGTAATG
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
56 1 0.02
57 21 0.47
58 23 0.51
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (58 bp):
AACATATGCTCAAGAGAGCTTATATCACGATTACCAGTCGAGGCTAAATCCTATCTAT
Found at i:73857559 original size:18 final size:18
Alignment explanation
Indices: 73857514--73857592 Score: 88
Period size: 18 Copynumber: 4.4 Consensus size: 18
73857504 TAGCCCATTA
73857514 CAGTAACAGT-ATCAGTG
1 CAGTAACAGTAATCAGTG
* ** *
73857531 TAGCGACAGTAATCAATG
1 CAGTAACAGTAATCAGTG
*
73857549 CAGTAATAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
* *
73857567 CAGTGACAGTAATTAGTG
1 CAGTAACAGTAATCAGTG
73857585 CAGTAACA
1 CAGTAACA
73857593 ATTTAAACAG
Statistics
Matches: 48, Mismatches: 13, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
17 7 0.15
18 41 0.85
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:73857565 original size:36 final size:35
Alignment explanation
Indices: 73857514--73857592 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 35
73857504 TAGCCCATTA
*
73857514 CAGTAACAGTATCAGTGTAGCGACAGTAATCAATG
1 CAGTAACAGTATCAGTGCAGCGACAGTAATCAATG
* * * *
73857549 CAGTAATAGTAATCAGTGCAGTGACAGTAATTAGTG
1 CAGTAACAGT-ATCAGTGCAGCGACAGTAATCAATG
73857585 CAGTAACA
1 CAGTAACA
73857593 ATTTAAACAG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
35 9 0.24
36 28 0.76
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (35 bp):
CAGTAACAGTATCAGTGCAGCGACAGTAATCAATG
Found at i:73857994 original size:27 final size:27
Alignment explanation
Indices: 73857926--73858005 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 27
73857916 AAACATACAT
* *
73857926 CACATAGGGGCAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * ** *
73857953 CATATAAAGAAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
73857980 CACATAAGGGCAAAACGGTCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
73858006 TCAATTTGGG
Statistics
Matches: 40, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:73860469 original size:24 final size:24
Alignment explanation
Indices: 73860404--73860470 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
73860394 GGAAGCTCAT
73860404 AAGAACCATAATCGGGAAGTTCACA
1 AAGAACCAT-ATCGGGAAGTTCACA
* **
73860429 AAGAACCTTATTAGGAAGTTCACA
1 AAGAACCATATCGGGAAGTTCACA
73860453 AAGAACCATATCGGGAAG
1 AAGAACCATATCGGGAAG
73860471 CTCCAGATAG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 28 0.78
25 8 0.22
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (24 bp):
AAGAACCATATCGGGAAGTTCACA
Found at i:73863861 original size:40 final size:40
Alignment explanation
Indices: 73863776--73863926 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
73863766 AATTGAATGA
* * *
73863776 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
73863816 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
73863857 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
73863896 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
73863927 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:73863940 original size:40 final size:40
Alignment explanation
Indices: 73863813--73863942 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
73863803 ATGCTGGAAA
* * * *
73863813 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
73863853 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
73863893 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
73863933 TTATATCCGG
1 TTATATCCGG
73863943 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:73873195 original size:41 final size:39
Alignment explanation
Indices: 73873069--73873199 Score: 106
Period size: 40 Copynumber: 3.3 Consensus size: 39
73873059 CGGAATATAT
*
73873069 CCGGATATAATC-ACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CAAC-TAGCAC-AATGCCTTCGGGTCTTAAC
* * * * *
73873109 CCGGATAGAATAACTCGCACGAATG-CTTCGGGCCATAAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAA-C
* *
73873149 CCGGATATAGCCACTAGCAACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGC-ACAA-TGCCTTCGGGTCTTAAC
73873190 CCGGATATAA
1 CCGGATATAA
73873200 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 14, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
39 11 0.15
40 35 0.49
41 14 0.20
42 11 0.15
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAAC
Found at i:73876001 original size:40 final size:40
Alignment explanation
Indices: 73875939--73876121 Score: 280
Period size: 40 Copynumber: 4.6 Consensus size: 40
73875929 AACCCAAGTA
* *
73875939 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
73875978 CCTTCGGGTCTTAACTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
73876018 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
73876058 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AAATG
*
73876099 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73876122 CATCCGAATA
Statistics
Matches: 132, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 11 0.08
40 93 0.70
41 28 0.21
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:73877685 original size:40 final size:39
Alignment explanation
Indices: 73877648--73877825 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 39
73877638 GCTACTCGTT
*
73877648 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
*
73877688 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
*
73877728 C--ATGCCTTC-GG-CTTAG-CCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
* * * *
73877762 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
73877803 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
73877826 ACATCATTCG
Statistics
Matches: 120, Mismatches: 9, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
34 14 0.12
35 4 0.03
36 14 0.12
37 2 0.02
38 13 0.11
39 4 0.03
40 56 0.47
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:73890410 original size:40 final size:40
Alignment explanation
Indices: 73890336--73890518 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
73890326 AAACCAAGTA
* * *
73890336 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
73890375 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
** * *
73890415 CCTTCGGGACTTAGCTTGGAGATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
73890455 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCAC-AAATG
*
73890496 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73890519 CATCCGAATA
Statistics
Matches: 127, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
39 13 0.10
40 88 0.69
41 26 0.20
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:73894957 original size:40 final size:40
Alignment explanation
Indices: 73894883--73895104 Score: 356
Period size: 40 Copynumber: 5.6 Consensus size: 40
73894873 AACCCAAGTA
* * *
73894883 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
73894922 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
** * *
73894962 CCTTCGGGACTTAGCTTGGAGATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
73895002 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
73895042 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
73895082 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73895105 CATCCGAATC
Statistics
Matches: 169, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.08
40 156 0.92
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:73896486 original size:13 final size:13
Alignment explanation
Indices: 73896468--73896493 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73896458 ATTTTTATTT
73896468 TTAACATAAAATA
1 TTAACATAAAATA
73896481 TTAACATAAAATA
1 TTAACATAAAATA
73896494 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:73897104 original size:179 final size:178
Alignment explanation
Indices: 73896808--73897524 Score: 856
Period size: 179 Copynumber: 4.0 Consensus size: 178
73896798 GTCACACTTT
* * * *
73896808 AATTCTCAATCT-CTTTCCTTGCTACCTCAGGAAGATAGGACTCATTTTTCATCTTGCTTTCTTG
1 AATTCTCAATCTGC-TTCCTTGCTACATCAGGAAGATAAGACTCATTCTTCA-CTTGCTCTCTTG
* * * *
73896872 CTTCCTCAGAGAGATGAA-GCTGTTGATAAAATCTGCTCGATTGCCGATACATGGAGATAAGATT
64 CTACCTCAGAGAGAT-AAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATT
* * * *
73896936 CACCATCTACGAAGAACTGCTCCACTGCAA-CTTTAGGGAGATAAGATCTTT
128 CACCATCTACGAAGATCTGCTCCACTGCAATC-TCAGGGAGATAAAATCTTC
* * *
73896987 AATTCTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCTACTTGCTCTCTTGC
1 AATTCTCAATCTGCTTCCTTGCTACATCAGGAAGATAAGACTCATTCTTC-ACTTGCTCTCTTGC
* * * * * *
73897052 TACCTCAGAGTGATAAGGTTAGTGGTAAAATTTGCTCCATTGTCGATACATGGAGATAAGGTTCA
65 TACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCA
* * *
73897117 CCATCTTC--A-ATCTGCTCCACTACAATCTCAGGGAGATAAAATCGTCC
130 CCATCTACGAAGATCTGCTCCACTGCAATCTCAGGGAGATAAAATC-TTC
* * * *
73897164 AA-TCTCAATCTGCTTCCTTGCTATATCAGGAAGATAAGGCTCATTCATCAACCTGCTCTCTTGC
1 AATTCTCAATCTGCTTCCTTGCTACATCAGGAAGATAAGACTCATTCTTC-ACTTGCTCTCTTGC
* * * *
73897228 TACCTCAGAGAGATAAGGCTGGCGGTGAAATCTGCTCCATTGCCGATACATAGAGATAAGACTCA
65 TACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCA
** * *
73897293 CCATCTGTGAAGATCTACTCCGCTGCAATCTCAGGGAGATAAAATCTTC
130 CCATCTACGAAGATCTGCTCCACTGCAATCTCAGGGAGATAAAATCTTC
* * * *
73897342 AATTCTCAGTCTGCTTCCTTGCTACATCAGGAAGATAAGACTCATTCTTCAATCTGCTCTCATAC
1 AATTCTCAATCTGCTTCCTTGCTACATCAGGAAGATAAGACTCATTCTTCACT-TGCTCTCTTGC
* * * *
73897407 TACCTCAGAGAGATAAGGCTGGGGGTAAAATCTGCTCCATTACTGATACGTGGAGATAAGATTCA
65 TACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCA
* * ** *
73897472 TCATCTATGAAGATCTGCTCTGCTGCAA-CTTCAGAGAGATAAAATCTTC
130 CCATCTACGAAGATCTGCTCCACTGCAATC-TCAGGGAGATAAAATCTTC
73897521 AATT
1 AATT
73897525 TTTATCTAAT
Statistics
Matches: 461, Mismatches: 66, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
176 143 0.31
177 5 0.01
178 9 0.02
179 302 0.66
180 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (178 bp):
AATTCTCAATCTGCTTCCTTGCTACATCAGGAAGATAAGACTCATTCTTCACTTGCTCTCTTGCT
ACCTCAGAGAGATAAGGCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
CATCTACGAAGATCTGCTCCACTGCAATCTCAGGGAGATAAAATCTTC
Found at i:73897463 original size:355 final size:355
Alignment explanation
Indices: 73896811--73897477 Score: 905
Period size: 355 Copynumber: 1.9 Consensus size: 355
73896801 ACACTTTAAT
* ** * * * *
73896811 TCTCAATCTCTTTCCTTGCTACCTCAGGAAGATAGGACTCATTTTTCATCTTGCTTTCTTGCTTC
1 TCTCAATCTCTTTCCTTGCTACATCAGGAAGATAGGACTCATTCATCAACCTGCTCTCTTGCTAC
** * * *
73896876 CTCAGAGAGATGAAGCTGTTGATAAAATCTGCTCGATTGCCGATACATGGAGATAAGATTCACCA
66 CTCAGAGAGATGAAGCTGGCGATAAAATCTGCTCCATTGCCGATACATAGAGATAAGACTCACCA
* * * *
73896941 TCTACGAAGAACTGCTCCACTGCAACTTTAGGGAGATAAGATCTTTAATTCTCAGTCTGCTCCCT
131 TCTACGAAGAACTACTCCACTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTCCCT
* * * * * *
73897006 TGCTACCTCAGGAAGATAAGACTCATTCTTCTACTTGCTCTCTTGCTACCTCAGAGTGATAAGGT
196 TGCTACATCAGGAAGATAAGACTCATTCTTCAACTTGCTCTCATACTACCTCAGAGAGATAAGGC
* * * *
73897071 TAGTGGTAAAATTTGCTCCATTGTCGATACATGGAGATAAGGTTCACCATCTTCAATCTGCTCCA
261 TAGGGGTAAAATCTGCTCCATTCTCGATACATGGAGATAAGATTCACCATCTTCAATCTGCTCCA
73897136 CTACAATCTCAGGGAGATAAAATCGTCCAA
326 CTACAATCTCAGGGAGATAAAATCGTCCAA
*
73897166 TCTCAATCTGC-TTCCTTGCTATATCAGGAAGATAAGG-CTCATTCATCAACCTGCTCTCTTGCT
1 TCTCAATCT-CTTTCCTTGCTACATCAGGAAGAT-AGGACTCATTCATCAACCTGCTCTCTTGCT
* *
73897229 ACCTCAGAGAGAT-AAGGCTGGCGGTGAAATCTGCTCCATTGCCGATACATAGAGATAAGACTCA
64 ACCTCAGAGAGATGAA-GCTGGCGATAAAATCTGCTCCATTGCCGATACATAGAGATAAGACTCA
** * *
73897293 CCATCTGTGAAGATCTACTCCGCTGCAA-TCTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCT
128 CCATCTACGAAGAACTACTCCACTGCAACT-TCAGGGAGATAAAATCTTCAATTCTCAGTCTGCT
*
73897357 TCCTTGCTACATCAGGAAGATAAGACTCATTCTTCAA-TCTGCTCTCATACTACCTCAGAGAGAT
192 CCCTTGCTACATCAGGAAGATAAGACTCATTCTTCAACT-TGCTCTCATACTACCTCAGAGAGAT
* * *
73897421 AAGGCTGGGGGTAAAATCTGCTCCATTACT-GATACGTGGAGATAAGATTCATCATCT
256 AAGGCTAGGGGTAAAATCTGCTCCATT-CTCGATACATGGAGATAAGATTCACCATCT
73897478 ATGAAGATCT
Statistics
Matches: 269, Mismatches: 37, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
354 4 0.01
355 260 0.97
356 5 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (355 bp):
TCTCAATCTCTTTCCTTGCTACATCAGGAAGATAGGACTCATTCATCAACCTGCTCTCTTGCTAC
CTCAGAGAGATGAAGCTGGCGATAAAATCTGCTCCATTGCCGATACATAGAGATAAGACTCACCA
TCTACGAAGAACTACTCCACTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTCCCT
TGCTACATCAGGAAGATAAGACTCATTCTTCAACTTGCTCTCATACTACCTCAGAGAGATAAGGC
TAGGGGTAAAATCTGCTCCATTCTCGATACATGGAGATAAGATTCACCATCTTCAATCTGCTCCA
CTACAATCTCAGGGAGATAAAATCGTCCAA
Found at i:73911212 original size:40 final size:40
Alignment explanation
Indices: 73911136--73911318 Score: 264
Period size: 40 Copynumber: 4.6 Consensus size: 40
73911126 AACCCAAGTA
* *
73911136 CCTTCGGGAT-TTAG-CCGGATATAG-CAACTCGGACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATG
73911175 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
* *
73911215 CCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
*
73911255 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAC-AAATG
*
73911296 CCTTCGGGTCTTAGCTCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
73911319 CATCCGAATA
Statistics
Matches: 133, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 93 0.70
41 27 0.20
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:73913917 original size:9 final size:9
Alignment explanation
Indices: 73913899--73913946 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
73913889 TAAGTAAACC
73913899 AATAATACA
1 AATAATACA
*
73913908 AATGATACA
1 AATAATACA
*
73913917 ATTAATACA
1 AATAATACA
* *
73913926 AACATTACA
1 AATAATACA
*
73913935 AATAATATA
1 AATAATACA
73913944 AAT
1 AAT
73913947 GATATAATAA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.27
Consensus pattern (9 bp):
AATAATACA
Found at i:73913924 original size:18 final size:18
Alignment explanation
Indices: 73913899--73913950 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
73913889 TAAGTAAACC
73913899 AATAATACAAATGATACA
1 AATAATACAAATGATACA
* *
73913917 ATTAATACAAA-CATTACA
1 AATAATACAAATGA-TACA
*
73913935 AATAATATAAATGATA
1 AATAATACAAATGATA
73913951 TAATAAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 1 0.04
18 25 0.93
19 1 0.04
ACGTcount: A:0.60, C:0.10, G:0.04, T:0.27
Consensus pattern (18 bp):
AATAATACAAATGATACA
Found at i:73916468 original size:29 final size:29
Alignment explanation
Indices: 73916429--73916503 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
73916419 CTTAATAATC
*
73916429 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
73916459 AACTCGCACACTTAGTGTCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
73916488 AGCCCGCACACTTAGT
1 AACCCGCACACTTAGT
73916504 CCCAATCTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
28 3 0.08
29 33 0.85
30 3 0.08
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:73917164 original size:2 final size:2
Alignment explanation
Indices: 73917146--73917181 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
73917136 TGATGGCCGA
* *
73917146 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73917182 CAACTATACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73918583 original size:23 final size:23
Alignment explanation
Indices: 73918548--73918596 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
73918538 GGTTTTCATC
*
73918548 TTAATTTATTTTTTTGTTTTTGT
1 TTAATTTATTTTTTGGTTTTTGT
*
73918571 TTAATTT-TATTTTTGGTTTTTTT
1 TTAATTTAT-TTTTTGGTTTTTGT
73918594 TTA
1 TTA
73918597 GCCCGGGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 22 0.96
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (23 bp):
TTAATTTATTTTTTGGTTTTTGT
Found at i:73923331 original size:47 final size:47
Alignment explanation
Indices: 73923277--73923372 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
73923267 GTTGAATTTA
*
73923277 AAGCTTGTTAAATTTGCTCTTAATATTTCCAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
* *
73923324 AAGCTTGTTAAATTTTCCCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
73923371 AA
1 AA
73923373 AGAAAATTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
Found at i:73924241 original size:44 final size:45
Alignment explanation
Indices: 73924178--73924435 Score: 293
Period size: 45 Copynumber: 5.9 Consensus size: 45
73924168 CGCATAGTAT
73924178 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATG-CGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
73924222 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTG-GAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG-ATAC
* *
73924267 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCAGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
73924312 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGATGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* * *
73924357 TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCAGTGA-ATA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * ** * * *
73924397 AATTCAGGTTTTTAAACCTAGCAGGCT-GAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
73924436 TTTGATAAAA
Statistics
Matches: 188, Mismatches: 18, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
40 2 0.01
41 6 0.03
42 32 0.17
43 14 0.07
44 46 0.24
45 86 0.46
46 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:73930721 original size:47 final size:47
Alignment explanation
Indices: 73930668--73930760 Score: 150
Period size: 47 Copynumber: 2.0 Consensus size: 47
73930658 GAACTTAAAC
*
73930668 CTTGTTAAATTTACTCTTAATATTTCCGGATAAGTTACTTAGTTAAG
1 CTTGTTAAATTTACCCTTAATATTTCCGGATAAGTTACTTAGTTAAG
* * *
73930715 CTTGTTAAATTTTCCCTTAATATTTCTGGATGAGTTACTTAGTTAA
1 CTTGTTAAATTTACCCTTAATATTTCCGGATAAGTTACTTAGTTAA
73930761 AGAAAATTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (47 bp):
CTTGTTAAATTTACCCTTAATATTTCCGGATAAGTTACTTAGTTAAG
Found at i:73942005 original size:21 final size:21
Alignment explanation
Indices: 73941979--73942021 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
73941969 GAATGTATGT
73941979 TCTATTTCATCCGATTCAGCC
1 TCTATTTCATCCGATTCAGCC
73942000 TCTATTTCATCCGATTCAGCC
1 TCTATTTCATCCGATTCAGCC
73942021 T
1 T
73942022 TATGTCTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.33, G:0.09, T:0.40
Consensus pattern (21 bp):
TCTATTTCATCCGATTCAGCC
Found at i:73944300 original size:27 final size:27
Alignment explanation
Indices: 73944247--73944313 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 27
73944237 ATATATAAAT
* *
73944247 ATTATAAAATAATTATTTTGTACTTAA
1 ATTATAAAATAATTAATTTGTAATTAA
*
73944274 ATTATTAACATAATTAATTT-TAATT-A
1 ATTA-TAAAATAATTAATTTGTAATTAA
* *
73944300 ATTTTATAATAATT
1 ATTATAAAATAATT
73944314 TTTTGATTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 8 0.24
26 4 0.12
27 8 0.24
28 13 0.39
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (27 bp):
ATTATAAAATAATTAATTTGTAATTAA
Found at i:73951015 original size:11 final size:10
Alignment explanation
Indices: 73950986--73951020 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
73950976 CCAATTTGTG
73950986 AAAAAAAAAT
1 AAAAAAAAAT
*
73950996 AAAATAAAAT
1 AAAAAAAAAT
73951006 AAAGAAAAAAT
1 AAA-AAAAAAT
73951017 AAAA
1 AAAA
73951021 TAACACACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:73952995 original size:49 final size:49
Alignment explanation
Indices: 73952923--73953099 Score: 185
Period size: 49 Copynumber: 3.6 Consensus size: 49
73952913 ATCTAGTATG
*
73952923 CATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATTTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACA
* * * * * **
73952972 CATAGTAGCCTGGACTTAGTACTACACACGTGATCACA-AGTTTCGGGTATG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCA-ATAATTT--GGTACA
* * **
73953023 CATAGTAGCCTGCACGTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACA
** *
73953072 TGTAGAAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
73953100 CGTGACCTCA
Statistics
Matches: 101, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
49 63 0.62
50 2 0.02
51 36 0.36
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACA
Found at i:73953037 original size:100 final size:100
Alignment explanation
Indices: 73952918--73953104 Score: 293
Period size: 100 Copynumber: 1.9 Consensus size: 100
73952908 AAGCTATCTA
* * ** *
73952918 GTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATTTGGTACACATAGTAGCCT
1 GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATAATCCGGTACACATAGAAGCCT
*
73952983 GGACTTAGTACTACACACGTGATCACAAGTTTCGG
66 GCACTTAGTACTACACACGTGATCACAAGTTTCGG
* **
73953018 GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATTATCCGGTACATGTAGAAGCCT
1 GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATAATCCGGTACACATAGAAGCCT
73953083 GCACTTAGTACTACACACGTGA
66 GCACTTAGTACTACACACGTGA
73953105 CCTCACAATA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (100 bp):
GTATGCATAGTAGCCTGCACGTAGTACTACACATGCGACCAATAATCCGGTACACATAGAAGCCT
GCACTTAGTACTACACACGTGATCACAAGTTTCGG
Found at i:73955604 original size:15 final size:15
Alignment explanation
Indices: 73955548--73955612 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
73955538 TAAAGATAAC
*
73955548 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
73955562 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
73955577 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
73955592 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
73955607 AAGAAA
1 AAGAAA
73955613 CCCATGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:73955614 original size:30 final size:31
Alignment explanation
Indices: 73955548--73955616 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
73955538 TAAAGATAAC
*
73955548 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
73955578 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
73955607 AAGAAACCCA
1 AAGAAACCCA
73955617 TGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:73958672 original size:49 final size:49
Alignment explanation
Indices: 73958600--73958767 Score: 160
Period size: 49 Copynumber: 3.4 Consensus size: 49
73958590 CTAGTATGCA
73958600 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACACG
* * * ** ** *
73958649 TAGTAGCCTAG-ACTTAGTACTACACACGTGATCACA-GGTTTCGGGTATGCA
1 TAGTAGCCT-GCACTTAGTACTACACATGCGACCA-ATAATTT--GGTACACG
* * * **
73958700 TAGTAGCCTGCACGTAGTACTGCACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACACG
*
73958749 TAGTAGCCTACACTTAGTA
1 TAGTAGCCTGCACTTAGTA
73958768 TGTGACATCC
Statistics
Matches: 91, Mismatches: 22, Indels: 12
0.73 0.18 0.10
Matches are distributed among these distances:
49 54 0.59
50 4 0.04
51 33 0.36
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTGGTACACG
Found at i:73959138 original size:24 final size:27
Alignment explanation
Indices: 73959105--73959163 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
73959095 ATTATGTAGG
*
73959105 AAGAATAA-AGAA-ATGAA-AAAAAAA
1 AAGAAAAAGAGAATATGAAGAAAAAAA
*
73959129 AAGAAAAAAGAGAATATGAAGAAAAACA
1 AAG-AAAAAGAGAATATGAAGAAAAAAA
73959157 AAGAAAA
1 AAGAAAA
73959164 GAAAAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 3 0.10
25 4 0.14
26 4 0.14
27 9 0.31
28 9 0.31
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.07
Consensus pattern (27 bp):
AAGAAAAAGAGAATATGAAGAAAAAAA
Found at i:73960408 original size:30 final size:29
Alignment explanation
Indices: 73960336--73960400 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
73960326 TGACGAGATT
* *
73960336 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
73960365 GGCACTAAGTGTGCATGCTGGAAAAAATAC
1 GGCACTAAGTGTGCATGCTGG-AAAAATAC
73960395 GGCACT
1 GGCACT
73960401 GGGTGTGCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 21 0.64
30 12 0.36
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAC
Found at i:73968268 original size:29 final size:29
Alignment explanation
Indices: 73968235--73968317 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
73968225 GTGACGAGAT
73968235 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
73968264 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
73968293 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
73968318 AAATACGGCA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:73968357 original size:59 final size:58
Alignment explanation
Indices: 73968231--73968366 Score: 159
Period size: 59 Copynumber: 2.3 Consensus size: 58
73968221 TACGGTGACG
* * *
73968231 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
73968288 ATATATGGCACTAAGTGTGCATGCTGGAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG-AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
73968347 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
73968367 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
57 3 0.05
58 22 0.33
59 40 0.61
60 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:73981053 original size:39 final size:39
Alignment explanation
Indices: 73980989--73981093 Score: 113
Period size: 39 Copynumber: 2.7 Consensus size: 39
73980979 TTCAGTGATG
* ** *
73980989 TATATCCGGACTTAGGGTCCCCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCCCAGGCTACATGCTGGAAA
**
73981028 TATATCCGGACTTAAGGTCTGCAGGCTACATGCTGGAAA
1 TATATCCGGACTTAAGGTCCCCAGGCTACATGCTGGAAA
* * *
73981067 TATGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATATCCGGACTTAAGGTCCC-CAGGCT
73981094 TCGAGCTAGT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 6 0.11
39 48 0.89
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCCCAGGCTACATGCTGGAAA
Found at i:73988475 original size:2 final size:2
Alignment explanation
Indices: 73988468--73988494 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
73988458 AAGTAACAAG
73988468 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
73988495 CTGTTTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73996438 original size:2 final size:2
Alignment explanation
Indices: 73996431--73996467 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
73996421 AAGTAACAAG
73996431 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73996468 CTATTTTCGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:74000492 original size:31 final size:31
Alignment explanation
Indices: 74000457--74000520 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
74000447 CCTTTTCATG
74000457 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
74000488 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
74000519 TT
1 TT
74000521 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:74000763 original size:24 final size:24
Alignment explanation
Indices: 74000726--74000854 Score: 197
Period size: 24 Copynumber: 5.4 Consensus size: 24
74000716 CTGGATGCCT
*
74000726 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
74000751 AGCCCTTTCAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74000775 AGCCCTTTT-ATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
74000798 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
74000822 AGCCCTTTTGATAACTGGTGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74000846 AGCCCTTTT
1 AGCCCTTTT
74000855 TCACTTCCTC
Statistics
Matches: 99, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
23 23 0.23
24 72 0.73
25 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:74000791 original size:47 final size:48
Alignment explanation
Indices: 74000726--74000853 Score: 195
Period size: 47 Copynumber: 2.7 Consensus size: 48
74000716 CTGGATGCCT
*
74000726 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATA
**
74000775 AGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATA
* *
74000822 AGCCCTTTTGATAACTGGTGCATAAGCCCTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTT
74000854 TTCACTTCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
47 44 0.59
48 26 0.35
49 4 0.05
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATA
Found at i:74000929 original size:20 final size:20
Alignment explanation
Indices: 74000904--74000968 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
74000894 TTATGATTAC
74000904 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74000924 ATCATGTGCATATTATACAT
1 ATCATGTGCATATCATACAT
* *
74000944 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
74000964 ATCAT
1 ATCAT
74000969 ATTTATCAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74001039 original size:25 final size:25
Alignment explanation
Indices: 74001007--74001054 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74000997 ATACATAAAC
* * *
74001007 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74001032 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74001055 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74008762 original size:16 final size:16
Alignment explanation
Indices: 74008741--74008771 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74008731 ATATATTTTC
*
74008741 ATTTGCATCATATATA
1 ATTTGCATCACATATA
74008757 ATTTGCATCACATAT
1 ATTTGCATCACATAT
74008772 CAAATAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATCACATATA
Found at i:74008980 original size:43 final size:44
Alignment explanation
Indices: 74008932--74009078 Score: 135
Period size: 43 Copynumber: 3.5 Consensus size: 44
74008922 CAATGCCAAC
*
74008932 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCT-GCT
1 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCTCGAT
* * * *
74008975 GTCCCAAATAG-GGTCTTACATG-AATAAAATA-CCATG-TCGAT
1 GTCCCAGA-CGTGGTCTTACATGTAATCAAATATCGATGCTCGAT
* * * * *
74009016 GTCCCAGACATGGTCTTACACGTAATCACATATCGATGC-CAAC
1 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCTCGAT
* *
74009059 GTCCTAGACATGGTCTTACA
1 GTCCCAGACGTGGTCTTACA
74009079 CGAAAACACA
Statistics
Matches: 83, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
40 1 0.01
41 23 0.28
42 15 0.18
43 43 0.52
44 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (44 bp):
GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCTCGAT
Found at i:74011124 original size:71 final size:71
Alignment explanation
Indices: 74011038--74011201 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74011028 CGATTTGTCT
74011038 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74011103 CTTTCA
66 CTTTCA
74011109 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74011174 CTTTCA
66 CTTTCA
74011180 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74011202 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74011239 original size:71 final size:70
Alignment explanation
Indices: 74011038--74011235 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
74011028 CGATTTGTCT
* * * *
74011038 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74011103 CTTTCA
65 CTTTCA
* * * *
74011109 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74011174 CTTTCA
65 CTTTCA
* *
74011180 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
74011236 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74026944 original size:40 final size:40
Alignment explanation
Indices: 74026889--74027136 Score: 347
Period size: 40 Copynumber: 6.2 Consensus size: 40
74026879 TGAATGATAC
* * *
74026889 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
74026929 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
74026969 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
74027009 CCGGGCTAAGACCCGAAAGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
74027049 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
74027089 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
74027129 CC-GGCTAA
1 CCGGGCTAA
74027137 ATTCCGAAGA
Statistics
Matches: 186, Mismatches: 21, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
39 5 0.03
40 179 0.96
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:74027102 original size:120 final size:120
Alignment explanation
Indices: 74026889--74027136 Score: 401
Period size: 120 Copynumber: 2.1 Consensus size: 120
74026879 TGAATGATAC
* * *
74026889 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAAGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
* * *
74026954 TGCGAGTTGCTATATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
66 TGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
*
74027009 CCGGGCTAAGACCCGAAAGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAAGCATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTT
*
74027073 GTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
65 GTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
74027129 CC-GGCTAA
1 CCGGGCTAA
74027137 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
119 6 0.05
120 111 0.93
121 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGACCCGAAAGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTTATAT
Found at i:74032101 original size:27 final size:27
Alignment explanation
Indices: 74032071--74032132 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
74032061 ATTTACTAAA
74032071 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
74032098 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
74032124 ATACCCCTA
1 ATACCCCTA
74032133 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 22 0.69
27 8 0.25
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:74032283 original size:27 final size:28
Alignment explanation
Indices: 74032242--74032343 Score: 118
Period size: 27 Copynumber: 3.7 Consensus size: 28
74032232 AAGCGTTCTG
* * *
74032242 GTGGCTGTGCTACAAATATCTG-ATCTG
1 GTGGCTCTGCCACAAATATCTGTATCTA
*
74032269 GTGGCTCTGCCACAAATATCTGTTTCTA
1 GTGGCTCTGCCACAAATATCTGTATCTA
*
74032297 GTGGCTCTGACAC-AATATCTGTATCTA
1 GTGGCTCTGCCACAAATATCTGTATCTA
* *
74032324 GTGACTCTGTCACAATATAT
1 GTGGCTCTGCCACAA-ATAT
74032344 GTTTTGGTAG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 44 0.69
28 16 0.25
29 4 0.06
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (28 bp):
GTGGCTCTGCCACAAATATCTGTATCTA
Found at i:74035144 original size:39 final size:39
Alignment explanation
Indices: 74035101--74035259 Score: 273
Period size: 39 Copynumber: 4.1 Consensus size: 39
74035091 TGTCCAGCAC
* *
74035101 ATAGCCTGCGGACCTAAAGTCCGGATATTATTCTCGCAT
1 ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCAT
*
74035140 ATAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCAT
*
74035179 ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCTT
1 ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCAT
*
74035218 ATAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCAT
74035257 ATA
1 ATA
74035260 TATATTTACA
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCAT
Found at i:74043722 original size:40 final size:40
Alignment explanation
Indices: 74043677--74043880 Score: 212
Period size: 40 Copynumber: 5.1 Consensus size: 40
74043667 CGGAATACAA
*
74043677 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * * *
74043717 CCGGATAGAACGACTTGAACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
74043757 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
74043797 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * *
74043837 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
74043877 CCGG
1 CCGG
74043881 GTATCATTCA
Statistics
Matches: 137, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 133 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:74044035 original size:64 final size:64
Alignment explanation
Indices: 74043967--74044282 Score: 148
Period size: 64 Copynumber: 5.1 Consensus size: 64
74043957 GAACACAAAC
74043967 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * **
74044031 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCGA-ACACA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTC-ATACACA
* *
74044087 AAC
62 CAT
74044090 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * ** * *** * **
74044154 ATATCAATA--ATCATTACACATTC-ATATTTCATTTTC-GTTA-C--T--AAGGCTCGA-ACAC
1 ATATCACTAGCATAATTGC-C-TTCGGGACTT-A-GCCCGGGTACCATTCAAATACTC-ATACAC
* *
74044209 AAAC
61 ACAT
74044213 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
74044277 ATATCA
1 ATATCA
74044283 ATAATCATTA
Statistics
Matches: 164, Mismatches: 60, Indels: 56
0.59 0.21 0.20
Matches are distributed among these distances:
58 2 0.01
59 49 0.30
60 14 0.09
61 14 0.09
62 14 0.09
63 14 0.09
64 55 0.34
65 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:74044071 original size:123 final size:123
Alignment explanation
Indices: 74043849--74044556 Score: 1326
Period size: 123 Copynumber: 5.8 Consensus size: 123
74043839 GGATATAATT
* * * * * * *
74043849 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
74043914 ATAATCATTACACATCCATATTTCATTTTTGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
74043972 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
74044037 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
74044095 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
74044160 ATAATCATTACACATTCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
74044218 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
74044283 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
*
74044341 ACTAGCATAATTGCCTTCGGGACTTAGCCCAGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
74044406 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
74044464 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
74044529 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
74044557 CACATAATTC
Statistics
Matches: 573, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 573 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
Found at i:74051601 original size:40 final size:40
Alignment explanation
Indices: 74051556--74051758 Score: 212
Period size: 40 Copynumber: 5.1 Consensus size: 40
74051546 CGGAATACAA
*
74051556 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
74051596 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
74051636 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
74051676 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTC-TAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * *
74051715 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
74051755 CCGG
1 CCGG
74051759 GTATCATTCA
Statistics
Matches: 137, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
39 31 0.23
40 106 0.77
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:74051913 original size:64 final size:64
Alignment explanation
Indices: 74051845--74052160 Score: 146
Period size: 64 Copynumber: 5.1 Consensus size: 64
74051835 GAACACAAAC
74051845 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * **
74051909 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCGA-ACACA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTC-ATACACA
* *
74051965 AAC
62 CAT
74051968 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * **
74052032 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCGA-ACACA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTC-ATACACA
* *
74052088 AAC
62 CAT
74052091 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
74052155 ATATCA
1 ATATCA
74052161 ATAATCATTA
Statistics
Matches: 162, Mismatches: 64, Indels: 52
0.58 0.23 0.19
Matches are distributed among these distances:
58 2 0.01
59 46 0.28
60 16 0.10
61 14 0.09
62 14 0.09
63 16 0.10
64 52 0.32
65 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:74051946 original size:123 final size:123
Alignment explanation
Indices: 74051727--74052188 Score: 852
Period size: 123 Copynumber: 3.8 Consensus size: 123
74051717 GGATATAATT
* * * * * * *
74051727 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
74051792 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTTGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
74051850 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
74051915 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
74051973 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
74052038 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
74052096 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
74052161 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
74052189 CACATAATTC
Statistics
Matches: 331, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 331 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
Found at i:74054557 original size:39 final size:38
Alignment explanation
Indices: 74054530--74054688 Score: 246
Period size: 39 Copynumber: 4.1 Consensus size: 38
74054520 TGTCCAGGAC
*
74054530 ATAGCCTGCGGACCTAAAGTCCGGATATTATTCTCGCAT
1 ATAGCCTGCGGACCTGAAGTCCGGATA-TATTCTCGCAT
*
74054569 ATAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTGAAGTCCGGATAT-ATTCTCGCAT
*
74054608 ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCTT
1 ATAGCCTGCGGACCTGAAGTCCGGATAT-ATTCTCGCAT
*
74054647 ATAGCCTACGGACCTGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTGAAGTCCGGATAT-ATTCTCGCAT
74054686 ATA
1 ATA
74054689 TATATTTACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 1 0.01
39 112 0.99
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (38 bp):
ATAGCCTGCGGACCTGAAGTCCGGATATATTCTCGCAT
Found at i:74054612 original size:78 final size:78
Alignment explanation
Indices: 74054530--74054688 Score: 273
Period size: 78 Copynumber: 2.0 Consensus size: 78
74054520 TGTCCAGGAC
* *
74054530 ATAGCCTGCGGACCTAAAGTCCGGATATTATTCTCGCATATAGCCTGCGGACATGAAGTCCGGAT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTACGGACATGAAGTCCGGAT
74054595 ATAATTCTCGCAT
66 ATAATTCTCGCAT
* * *
74054608 ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCTTATAGCCTACGGACCTGAAGTCCGGAT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTACGGACATGAAGTCCGGAT
74054673 ATAATTCTCGCAT
66 ATAATTCTCGCAT
74054686 ATA
1 ATA
74054689 TATATTTACA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (78 bp):
ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTACGGACATGAAGTCCGGAT
ATAATTCTCGCAT
Found at i:74058495 original size:96 final size:96
Alignment explanation
Indices: 74058331--74058576 Score: 411
Period size: 96 Copynumber: 2.6 Consensus size: 96
74058321 GATGGCACCG
*
74058331 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCTAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
1 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
74058396 CGAAGGGAACGATGGAGCAGACAAGGACCCC
66 CGAAGGGAACGATGGAGCAGACAAGGACCCC
* * * *
74058427 AAGAAGCTTAGTTCGAGCAAGAGTAAAGCCGAAGCCAAGAAGGCAAAGAGGAGCAAGTCTGTTAT
1 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
* *
74058492 CGAAGGGAATGATGGAGCAGACAAGGAGCCC
66 CGAAGGGAACGATGGAGCAGACAAGGACCCC
* *
74058523 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCAAAGCCAAGAGGGCTAAGAGGAGC
1 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
74058577 TGAAAGCACA
Statistics
Matches: 138, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 138 1.00
ACGTcount: A:0.37, C:0.17, G:0.34, T:0.12
Consensus pattern (96 bp):
AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
CGAAGGGAACGATGGAGCAGACAAGGACCCC
Found at i:74063078 original size:27 final size:27
Alignment explanation
Indices: 74063040--74063147 Score: 146
Period size: 27 Copynumber: 4.0 Consensus size: 27
74063030 GAGGAAGCGT
74063040 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
* *
74063067 TCTGGTGGCTCTGCCACAAATATTTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
74063095 TCTGGTGGCTCTGCCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* * *
74063122 TCTAGTGACTCTGTCACAATATCTGT
1 TCTGGTGGCTCTGCCACAATATCTGT
74063148 TTTGGTAGCC
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 56 0.77
28 17 0.23
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:74063134 original size:55 final size:54
Alignment explanation
Indices: 74063039--74063153 Score: 162
Period size: 55 Copynumber: 2.1 Consensus size: 54
74063029 AGAGGAAGCG
* * *
74063039 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATTTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGATCTAGTGACTCTGCCAC-AATATCTGT
*
74063094 TTCTGGTGGCTCTGCCAC-AATATCTGTATCTAGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTG-ATCTAGTGACTCTGCCACAATATCTGT
74063148 TT-TGGT
1 TTCTGGT
74063154 AGCCATGCTG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
53 4 0.07
54 18 0.33
55 33 0.60
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (54 bp):
TTCTGGTGGCTCTGCCACAAATATCTGATCTAGTGACTCTGCCACAATATCTGT
Found at i:74065932 original size:80 final size:81
Alignment explanation
Indices: 74065848--74065997 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 81
74065838 TTATAGTGAT
* * * * *
74065848 TCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAGTAAC-TCGCACGAATGCCTTCGGGACTT
1 TCGCACAAATACCTTCGGGAATTGA-CCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTT
74065911 AACCCGATTTTGGTAAC
65 AACCCGATTTTGGTAAC
*
74065928 TCGCACAAATACCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 TCGCACAAATACCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTTA
*
74065993 GCCCG
66 ACCCG
74065998 GACACCATTC
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
80 35 0.57
81 26 0.43
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
TCGCACAAATACCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTTA
ACCCGATTTTGGTAAC
Found at i:74065998 original size:41 final size:40
Alignment explanation
Indices: 74065820--74065999 Score: 163
Period size: 40 Copynumber: 4.5 Consensus size: 40
74065810 GCTCGATTGT
* * **
74065820 CTTCGGGACATT-GCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGATT-TAGTAACTCGCACAAAAGC
* * *
74065860 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAAAGC
* *
74065900 CTTCGGGACTTAACCC-GATTTTGGTAACTCGCACAAATA-C
1 CTTCGGGACTTAGCCCGGA-TTTAGTAACTCGCACAAA-AGC
* * *
74065940 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAAAGC
74065981 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
74066000 CACCATTCGA
Statistics
Matches: 115, Mismatches: 16, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
39 4 0.03
40 81 0.70
41 29 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAAAGC
Found at i:74071547 original size:40 final size:39
Alignment explanation
Indices: 74071464--74071614 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
74071454 TCGAATGATG
* * * *
74071464 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTA-AGTGACTATA
1 TCCGGGCTAAGTCC-GAAGGCATTCGTGCGAGA-T-AATAAA
* *
74071504 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGATAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGATAATAAA
* * * * *
74071544 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGATAATAAA
* *
74071583 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAG
74071615 TCGCTATAAC
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 32 0.36
40 45 0.51
41 11 0.12
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGATAATAAA
Found at i:74071564 original size:39 final size:40
Alignment explanation
Indices: 74071517--74071614 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 40
74071507 GGACTAGGAT
*
74071517 CCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGATAATAAACCCGGGCTAAGTC
* * * * *
74071556 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAATAAACCCGGGCTAAGTC
74071596 CCGAAGGCATTCGTGCGAG
1 CCGAAGGCATTCGTGCGAG
74071615 TCGCTATAAC
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
39 32 0.64
40 18 0.36
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATAATAAACCCGGGCTAAGTC
Found at i:74071628 original size:40 final size:40
Alignment explanation
Indices: 74071517--74071656 Score: 135
Period size: 40 Copynumber: 3.5 Consensus size: 40
74071507 GGACTAGGAT
* * *
74071517 CCGAAGGCATTCGTGCGAGAT-AATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAG-TCACTAAACCCGGGTTAAGTC
* * *
74071556 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGTTAAGTC
* *
74071596 CCGAAGGCATTCGTGCGAGTCGCTATAA-CCGGGCTT-CGTC
1 CCGAAGGCATTCGTGCGAGTCACTA-AACCCGGG-TTAAGTC
* *
74071636 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
74071657 GTTATATCCG
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 31 0.36
40 49 0.58
41 4 0.05
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGTTAAGTC
Found at i:74071628 original size:79 final size:81
Alignment explanation
Indices: 74071464--74071648 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 81
74071454 TCGAATGATG
* * * *
74071464 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
74071528 CGTGCGAGATAATAAA
66 CGTGCGAGATAATAAA
* **
74071544 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
**
74071606 TCGTGCGAG-TCGCTATAA
65 TCGTGCGAGAT-AATA-AA
**
74071624 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74071649 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
78 2 0.02
79 53 0.60
80 34 0.38
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATAATAAA
Found at i:74073576 original size:68 final size:70
Alignment explanation
Indices: 74073504--74073701 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
74073494 ACACCCTGTA
* * * *
74073504 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
74073566 ATAAAT
65 ATAAAT
*
74073572 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
74073637 ATAAAT
65 ATAAAT
*
74073643 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
74073702 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:74073615 original size:41 final size:41
Alignment explanation
Indices: 74073570--74073687 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
74073560 TGAAAGATAA
74073570 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
74073611 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74073641 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74073682 ATGTAG
1 ATGTAG
74073688 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:74073627 original size:71 final size:71
Alignment explanation
Indices: 74073538--74073701 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74073528 GAGATGTATC
74073538 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74073603 AGGACA
66 AGGACA
74073609 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74073674 AGGACA
66 AGGACA
74073680 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74073702 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74081143 original size:68 final size:70
Alignment explanation
Indices: 74081071--74081268 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
74081061 ACACCCTGTA
* * * *
74081071 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
74081133 ATAAAT
65 ATAAAT
*
74081139 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
74081204 ATAAAT
65 ATAAAT
*
74081210 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
74081269 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:74081182 original size:41 final size:41
Alignment explanation
Indices: 74081137--74081254 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
74081127 TGAAAGATAA
74081137 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
74081178 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74081208 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74081249 ATGTAG
1 ATGTAG
74081255 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:74081194 original size:71 final size:71
Alignment explanation
Indices: 74081105--74081268 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74081095 GAGATGTATC
74081105 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74081170 AGGACA
66 AGGACA
74081176 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74081241 AGGACA
66 AGGACA
74081247 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74081269 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74083852 original size:40 final size:40
Alignment explanation
Indices: 74083803--74083951 Score: 208
Period size: 40 Copynumber: 3.7 Consensus size: 40
74083793 ACAACCACAA
* *
74083803 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACCATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACTT
74083843 GCACCATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACTT
1 GCACCATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACTT
* *** *
74083883 GCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACCATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACTT
* * *
74083923 GCACGAATGCCTTCGGGTCTTAGCTCGGA
1 GCACCATTGCCTTCGGGTCTTAGCCCGGA
74083952 CATAATCACT
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.19, C:0.28, G:0.24, T:0.29
Consensus pattern (40 bp):
GCACCATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACTT
Found at i:74083972 original size:40 final size:40
Alignment explanation
Indices: 74083802--74083991 Score: 148
Period size: 40 Copynumber: 4.8 Consensus size: 40
74083792 TACAACCACA
* * ** ***
74083802 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGACATAACAACT
* * * ** ***
74083842 TGCACCATTGCCTTCGGGTCTTAGCCCGGATTTGGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGACATAACAACT
* * * *
74083882 TGCACCATTGCCTTCGGGTCTTAGCCCGGATATAACAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGACATAACAACT
* * *
74083922 CGCACGAATGCCTTCGGGTCTTAGCTCGGACATAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGACATAA-CAACT
* *
74083962 AGCATAAATGCCTTCGGGACTTAGCCCGGA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGA
74083992 TATCATTCAA
Statistics
Matches: 132, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
40 131 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGACATAACAACT
Found at i:74091150 original size:40 final size:40
Alignment explanation
Indices: 74091101--74091268 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
74091091 TCTTCGGAAT
* * *
74091101 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
74091140 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
74091180 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
74091220 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
74091260 TTAGCCCGG
1 TTAGCCCGG
74091269 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:74094264 original size:40 final size:39
Alignment explanation
Indices: 74094220--74094438 Score: 199
Period size: 40 Copynumber: 5.5 Consensus size: 39
74094210 GCTCGATTGT
* * *
74094220 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTT-TAGTAACTCGCACAAATGC
* * *
74094260 CTTCGGGAATTAGCCCAGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCC-GGTTTAGTAACTCGCACAAATGC
* * * *
74094300 CTTCGGGACTTAACCCGATTTTGGTAACTCACACAAATGC
1 CTTCGGGACTTAGCCCG-GTTTAGTAACTCGCACAAATGC
* * *
74094340 CTTCGGGACTTAACCCAGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCC-GGTTTAGTAACTCGCACAAATGC
* * * *
74094380 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
74094421 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
74094439 ACACCATTCG
Statistics
Matches: 150, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 4 0.03
40 116 0.77
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:74094341 original size:80 final size:81
Alignment explanation
Indices: 74094250--74094436 Score: 243
Period size: 80 Copynumber: 2.3 Consensus size: 81
74094240 ATAGTGATTC
* * * *
74094250 GCACAATTGCCTTCGGGAATTAGCCCAGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACC
1 GCACAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACC
*
74094315 C-GATTTTGGTAACTCA
66 CGGA-TTTAGTAACTCA
* * * *
74094331 -CACAAATGCCTTCGGGACTTAACCCAGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACC
1 GCACAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACC
* *
74094395 CGGATTTAGTCACTTA
66 CGGATTTAGTAACTCA
*
74094411 GCACAAAAGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGACTTAGCCC
74094437 GGACACCATT
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 66 0.73
81 25 0.27
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (81 bp):
GCACAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAACC
CGGATTTAGTAACTCA
Found at i:74105097 original size:49 final size:49
Alignment explanation
Indices: 74105013--74105220 Score: 386
Period size: 49 Copynumber: 4.3 Consensus size: 49
74105003 CCCTTCGGGA
74105013 CTTATCACATATAT--ACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74105059 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
74105108 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74105157 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74105206 CTTATCACATATATA
1 CTTATCACATATATA
74105221 TACCTCATAC
Statistics
Matches: 157, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
46 14 0.09
48 4 0.03
49 139 0.89
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74108796 original size:40 final size:40
Alignment explanation
Indices: 74108739--74109018 Score: 501
Period size: 40 Copynumber: 7.0 Consensus size: 40
74108729 CGAATACACG
* * *
74108739 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
74108779 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
74108819 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
74108859 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
74108898 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
74108938 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
74108978 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
74109017 TC
1 TC
74109019 GTCGAGACTT
Statistics
Matches: 234, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
39 42 0.18
40 192 0.82
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:74108956 original size:119 final size:120
Alignment explanation
Indices: 74108739--74109018 Score: 501
Period size: 119 Copynumber: 2.4 Consensus size: 120
74108729 CGAATACACG
* * * *
74108739 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
*
74108804 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
74108859 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
74108923 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
74108978 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATC
74109019 GTCGAGACTT
Statistics
Matches: 154, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
119 121 0.79
120 33 0.21
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (120 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:74109140 original size:38 final size:38
Alignment explanation
Indices: 74109071--74109145 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
74109061 GAATTTTAAT
*
74109071 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* * * *
74109109 CCGGACATAATTTCT-TCATATAGTCAGCGGGTTTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
74109146 AACTCGGATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:74111386 original size:22 final size:22
Alignment explanation
Indices: 74111361--74111405 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
74111351 CCATTCGGCC
74111361 CTATCACATATATACACCTTCA
1 CTATCACATATATACACCTTCA
74111383 CTATCACATATATACACCTTCA
1 CTATCACATATATACACCTTCA
74111405 C
1 C
74111406 ATTCATCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.31
Consensus pattern (22 bp):
CTATCACATATATACACCTTCA
Found at i:74111435 original size:69 final size:69
Alignment explanation
Indices: 74111315--74111452 Score: 213
Period size: 69 Copynumber: 2.0 Consensus size: 69
74111305 CTTCGGGACT
* * * * *
74111315 TATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATACACCT
1 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATACACACCT
74111380 TCAC
66 TCAC
* *
74111384 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTT
1 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATACACACCT
74111449 TCAC
66 TCAC
74111453 ATTCATCACA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.30, C:0.32, G:0.06, T:0.32
Consensus pattern (69 bp):
TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATACACACCT
TCAC
Found at i:74111438 original size:22 final size:22
Alignment explanation
Indices: 74111410--74111485 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
74111400 CTTCACATTC
74111410 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
74111432 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
74111456 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
74111479 ATCACAT
1 ATCACAT
74111486 ATATATACAC
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:74111483 original size:94 final size:93
Alignment explanation
Indices: 74111384--74111631 Score: 435
Period size: 94 Copynumber: 2.6 Consensus size: 93
74111374 ACACCTTCAC
74111384 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACACTT
1 TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-ACACTT
74111449 TCACATTCATCACATCGGCCATTAGGCCT
65 TCACATTCATCACATCGGCCATTAGGCCT
*
74111478 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-ACACT
1 TATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAACACT
74111542 TTCACATTCATCACATCGGCCATTAGGCCT
64 TTCACATTCATCACATCGGCCATTAGGCCT
74111572 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
74111632 TATACCTCAT
Statistics
Matches: 147, Mismatches: 2, Indels: 9
0.93 0.01 0.06
Matches are distributed among these distances:
92 10 0.07
94 87 0.59
96 50 0.34
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (93 bp):
TATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAACACTTT
CACATTCATCACATCGGCCATTAGGCCT
Found at i:74111509 original size:49 final size:49
Alignment explanation
Indices: 74111390--74111636 Score: 425
Period size: 49 Copynumber: 5.2 Consensus size: 49
74111380 TCACTATCAC
*
74111390 ATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
74111437 ATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
74111486 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
74111533 --ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
74111580 ATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
74111629 ATATATAC
1 ATATATAC
74111637 CTCATACAAA
Statistics
Matches: 189, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
45 45 0.24
47 45 0.24
49 99 0.52
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (49 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:74111534 original size:22 final size:22
Alignment explanation
Indices: 74111506--74111579 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
74111496 TTTCACATTC
74111506 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** * *
74111528 ATCACATATACACTTTCA--CATT
1 ATCACATCGGC-CATT-AGGCCTT
74111550 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
74111573 ATCACAT
1 ATCACAT
74111580 ATATACACAC
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:74113841 original size:46 final size:45
Alignment explanation
Indices: 74113783--74114045 Score: 234
Period size: 46 Copynumber: 5.8 Consensus size: 45
74113773 TAACTAGGCA
* *
74113783 TCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAGTG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA-AG
* * * *** *
74113829 TCCGAACTCGTTGAGTTGAGTCTGAG-TGA-TGTAACTA-G-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCGAAG
74113870 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * ** * *
74113916 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGACAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
74113963 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
74114009 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74114046 GCGGGTTACA
Statistics
Matches: 171, Mismatches: 32, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
41 24 0.14
42 5 0.03
43 4 0.02
44 7 0.04
45 6 0.04
46 88 0.51
47 32 0.19
48 1 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:74113900 original size:87 final size:88
Alignment explanation
Indices: 74113768--74114035 Score: 412
Period size: 87 Copynumber: 3.0 Consensus size: 88
74113758 CGAGTTCGAG
* *
74113768 AGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAGTGTCCG
1 AGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
74113833 AACTCGTTGAGTTGAGTCTGAGT
66 AACTCGTTGAGTTGAGTCTGAGT
74113856 -GATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
74113920 AACTCGTTGAGTTGAGTCTGAGTT
66 AACTCGTTGAGTTGAGTCTGAG-T
* **
74113944 CGACAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACA
1 ----AGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74114009 CCCGAGCTCGTTGAGTTGAGTCCGAGT
62 TCCGAACTCGTTGAGTTGAGTCTGAGT
74114036 TCGCTTATGG
Statistics
Matches: 166, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
87 84 0.51
88 1 0.01
92 1 0.01
93 80 0.48
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (88 bp):
AGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
AACTCGTTGAGTTGAGTCTGAGT
Found at i:74113989 original size:93 final size:92
Alignment explanation
Indices: 74113749--74114038 Score: 446
Period size: 93 Copynumber: 3.2 Consensus size: 92
74113739 GGGTGTCACA
*
74113749 AGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAATTCAC
1 AGTTGAGTCCGAGTTCGA-AGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
*
74113814 TTATGGATGCGAGTGTCCGAACTCGTTG
65 TTATGGATGCGAATGTCCGAACTCGTTG
*
74113842 AGTTGAGTCTGAG-T----GATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 AGTTGAGTCCGAGTTCGAAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
74113902 TATGGATGCGAATGTCCGAACTCGTTG
66 TATGGATGCGAATGTCCGAACTCGTTG
*
74113929 AGTTGAGTCTGAGTTCGACAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 AGTTGAGTCCGAGTTCGA-AGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
* *** *
74113994 TTGTGGATGCGAACACCCGAGCTCGTTG
65 TTATGGATGCGAATGTCCGAACTCGTTG
74114022 AGTTGAGTCCGAGTTCG
1 AGTTGAGTCCGAGTTCG
74114039 CTTATGGGCG
Statistics
Matches: 182, Mismatches: 9, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
87 84 0.46
88 1 0.01
92 1 0.01
93 96 0.53
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (92 bp):
AGTTGAGTCCGAGTTCGAAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
TATGGATGCGAATGTCCGAACTCGTTG
Found at i:74116048 original size:29 final size:29
Alignment explanation
Indices: 74116016--74116088 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
74116006 CTTCGAGCTC
*
74116016 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74116045 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74116074 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
74116089 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:74123550 original size:25 final size:25
Alignment explanation
Indices: 74123522--74123569 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74123512 TTATACCATG
* * *
74123522 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74123547 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74123570 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74123672 original size:20 final size:20
Alignment explanation
Indices: 74123612--74123672 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
74123602 ATAAATGTGG
*
74123612 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
74123632 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
74123652 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
74123672 T
1 T
74123673 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:74123748 original size:24 final size:24
Alignment explanation
Indices: 74123720--74123801 Score: 155
Period size: 24 Copynumber: 3.4 Consensus size: 24
74123710 GAGGAAGTGA
74123720 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
74123744 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
74123768 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
74123792 AAAAGGGCTT
1 AAAAGGGCTT
74123802 TGTGACAGCC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:74125676 original size:40 final size:40
Alignment explanation
Indices: 74125549--74125678 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
74125539 ATGCTGGAAA
* *
74125549 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
74125589 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
74125629 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
74125669 TTATATCCGG
1 TTATATCCGG
74125679 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:74125677 original size:80 final size:79
Alignment explanation
Indices: 74125512--74125678 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
74125502 CAATTGAATG
* *
74125512 ATATCCGGGCTAAGTCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
74125577 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * ** *
74125591 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
74125655 -ATTCGTGC-ACGTGGTT
64 AATT-GTGCTA-GTGGCT
74125671 ATATCCGG
1 ATATCCGG
74125679 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 29 0.39
80 45 0.61
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:74133606 original size:124 final size:124
Alignment explanation
Indices: 74133384--74133608 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
74133374 GAATTATGTG
* * * * * *
74133384 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
74133449 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
74133508 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
74133573 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
74133609 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 1 0.01
124 87 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:74133730 original size:40 final size:40
Alignment explanation
Indices: 74133603--74133732 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
74133593 ATGCTGGAAA
* *
74133603 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
74133643 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
74133683 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
74133723 TTATATCCGG
1 TTATATCCGG
74133733 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:74133731 original size:80 final size:80
Alignment explanation
Indices: 74133565--74133732 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
74133555 CAATTGAATG
* * *
74133565 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
74133630 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
74133645 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
74133709 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
74133725 ATATCCGG
1 ATATCCGG
74133733 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:74135119 original size:24 final size:24
Alignment explanation
Indices: 74135068--74135143 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
74135058 GGGTGTTACA
*
74135068 GGCTTATGCCCCAGTT-CTAAAAG
1 GGCTTATGCCCCAGTTATTAAAAG
*
74135091 GGCTTATGCCCCAGTTATTGAAAG
1 GGCTTATGCCCCAGTTATTAAAAG
*
74135115 GGCTTTTGCCCCAGTTATTAAAAG
1 GGCTTATGCCCCAGTTATTAAAAG
74135139 AGGCT
1 -GGCT
74135144 AGGCCTCCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
23 16 0.34
24 27 0.57
25 4 0.09
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
GGCTTATGCCCCAGTTATTAAAAG
Found at i:74135387 original size:31 final size:31
Alignment explanation
Indices: 74135349--74135412 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
74135339 CGGTTACAGT
74135349 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* ** *
74135380 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
74135411 AA
1 AA
74135413 CATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:74142545 original size:44 final size:41
Alignment explanation
Indices: 74142495--74142612 Score: 112
Period size: 44 Copynumber: 2.7 Consensus size: 41
74142485 GCTATATGAG
74142495 GCACTAAGTGTACAATACCGATT-TAGCTTCGGTTAATTGAGAT
1 GCACTAAGTGTACAAT--CG-TTCTAGCTTCGGTTAATTGAGAT
**
74142538 AGCACTAAGTGTGTGGAATCGTTCTAGCTTCGGTTAATTGAGAT
1 -GCACTAA--GTGTACAATCGTTCTAGCTTCGGTTAATTGAGAT
**
74142582 GTCACTAAGTGAGTGGAATCGTTCTAGCTTC
1 G-CACTAAGT--GTACAATCGTTCTAGCTTC
74142613 AGCTAACTGT
Statistics
Matches: 66, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
42 2 0.03
43 3 0.05
44 54 0.82
46 7 0.11
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (41 bp):
GCACTAAGTGTACAATCGTTCTAGCTTCGGTTAATTGAGAT
Found at i:74142632 original size:44 final size:42
Alignment explanation
Indices: 74142538--74142636 Score: 117
Period size: 44 Copynumber: 2.3 Consensus size: 42
74142528 TAATTGAGAT
* * * *
74142538 AGCACTAAGTGTGTGGAATCGTTCTAGCTTCGGTTAATTGAG
1 AGCACTAAGTGAGTGGAATCGTTCTAGCTTCAGCTAATTGAC
*
74142580 ATGTCACTAAGTGAGTGGAATCGTTCTAGCTTCAGCTAACTGTTAC
1 A-G-CACTAAGTGAGTGGAATCGTTCTAGCTTCAGCTAA-T-TGAC
74142626 AGCACTAAGTG
1 AGCACTAAGTG
74142637 TACGGATGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
42 1 0.02
43 1 0.02
44 41 0.85
45 2 0.04
46 3 0.06
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
AGCACTAAGTGAGTGGAATCGTTCTAGCTTCAGCTAATTGAC
Found at i:74143724 original size:67 final size:67
Alignment explanation
Indices: 74143616--74143762 Score: 285
Period size: 67 Copynumber: 2.2 Consensus size: 67
74143606 GGCCAAGGTC
74143616 CACGGGCGTGTCTTGTAATCGTGTGAGCAAGTCAGTAGCTATGCCCTATTCTGCCACGGCTTAGA
1 CACGGGCGTGTCTTGTAATCGTGTGAGCAAGTCAGTAGCTATGCCCTATTCTGCCACGGCTTAGA
74143681 CA
66 CA
*
74143683 CACGGGCGTGTCTTGTAATCGTGTGAGCAAGTCAGTAGCTATGCCCTGTTCTGCCACGGCTTAGA
1 CACGGGCGTGTCTTGTAATCGTGTGAGCAAGTCAGTAGCTATGCCCTATTCTGCCACGGCTTAGA
74143748 CA
66 CA
74143750 CACGGGCGTGTCT
1 CACGGGCGTGTCT
74143763 AAGACCGTGT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 79 1.00
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.27
Consensus pattern (67 bp):
CACGGGCGTGTCTTGTAATCGTGTGAGCAAGTCAGTAGCTATGCCCTATTCTGCCACGGCTTAGA
CA
Found at i:74157063 original size:27 final size:27
Alignment explanation
Indices: 74157044--74157371 Score: 460
Period size: 27 Copynumber: 12.2 Consensus size: 27
74157034 ATTACCAAAG
74157044 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
74157071 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
74157098 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
74157125 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
**
74157152 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
74157179 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
74157206 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
74157233 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * **
74157260 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
74157287 TACCCTCGATTTA-AGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
74157313 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
74157340 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
74157367 TACCC
1 TACCC
74157372 CTAGGGTGTT
Statistics
Matches: 271, Mismatches: 29, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
26 21 0.08
27 250 0.92
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:74157924 original size:31 final size:31
Alignment explanation
Indices: 74157889--74157967 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
74157879 TTGTATTCAC
* *
74157889 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* *
74157920 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
74157951 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
74157968 CATTTTGATT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:74157928 original size:6 final size:6
Alignment explanation
Indices: 74157889--74157979 Score: 60
Period size: 6 Copynumber: 14.8 Consensus size: 6
74157879 TTGTATTCAC
* * * *
74157889 ATTCTG ATTTTG ATTCTG -TTACCTA ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
74157938 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
74157980 AGTTCTAATA
Statistics
Matches: 63, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
5 3 0.05
6 54 0.86
7 4 0.06
8 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:74159219 original size:30 final size:30
Alignment explanation
Indices: 74159163--74159219 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
74159153 TTTCAGGCCT
* **
74159163 AGGGGTAAAATTGTCATTTTGTCAAAGTCG
1 AGGGGTAAAATGGTCATTTTACCAAAGTCG
*
74159193 AGGGGTAAACTGGTCATTTTACCAAAG
1 AGGGGTAAAATGGTCATTTTACCAAAG
74159220 ATATGAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (30 bp):
AGGGGTAAAATGGTCATTTTACCAAAGTCG
Found at i:74160498 original size:37 final size:37
Alignment explanation
Indices: 74160444--74160578 Score: 209
Period size: 37 Copynumber: 3.6 Consensus size: 37
74160434 AATAGTCCCC
* * *
74160444 ACACGTAGTTATCGGGTCTTATCCGGACAAAATCTCT
1 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCT
* *
74160481 ACACGTAGTCATTGGGTCTTACCCGGACATAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCT
74160518 ACACGTAGTCATCGGGTCTTACCCGGACATAATCT-T
1 ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCT
74160554 CACACGTAGTCATCGGGTCTTACCC
1 -ACACGTAGTCATCGGGTCTTACCC
74160579 AGAATATATT
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
37 90 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
ACACGTAGTCATCGGGTCTTACCCGGACATAATCTCT
Done.