Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 238 of 433
Found at i:74160780 original size:48 final size:48
Alignment explanation
Indices: 74160722--74161378 Score: 1093
Period size: 48 Copynumber: 13.9 Consensus size: 48
74160712 ATATACACAC
*
74160722 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74160770 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
74160818 ATGTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
74160866 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
74160914 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74160960 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74161008 ATCTCATACATA--TCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
74161054 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74161100 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
74161148 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74161194 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
74161242 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** * *
74161290 ATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74161336 ATCTCATACATATTTCACACTAG-CATTCGGCTTTACCACATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
74161379 TCAGTACAAG
Statistics
Matches: 570, Mismatches: 29, Indels: 21
0.92 0.05 0.03
Matches are distributed among these distances:
45 16 0.03
46 201 0.35
47 1 0.00
48 352 0.62
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:74161011 original size:94 final size:95
Alignment explanation
Indices: 74160722--74161378 Score: 1062
Period size: 94 Copynumber: 7.0 Consensus size: 95
74160712 ATATACACAC
*
74160722 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
74160787 CACTAGCCATTCGGCTTTACCACATATACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
* * *
74160818 ATGTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
74160883 CACTAGCCATTCGGCTTTACCACATATACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
* * *
74160914 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC-ACACATATCTCATACATATTTCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAATACATATCTCATACATATTTCAC
74160978 ACTAGCCATTCGGCTTTACCACATATACAT
66 ACTAGCCATTCGGCTTTACCACATATACAT
*
74161008 ATCTCATACATA--TCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
* *
74161071 CATTAGCCATTCGGCTTTACCAC--ACACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
74161100 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
*
74161165 CACTAGCCATTCGGCTTTACCAC--ACACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
74161194 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
*
74161259 CACTAGCCATTCGACTTTACCACATATACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
** * *
74161290 ATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCAC-ACACATATCTCATACATATTTCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAATACATATCTCATACATATTTCAC
74161354 ACTAG-CATTCGGCTTTACCACATAT
66 ACTAGCCATTCGGCTTTACCACATAT
74161379 TCAGTACAAG
Statistics
Matches: 530, Mismatches: 25, Indels: 15
0.93 0.04 0.03
Matches are distributed among these distances:
92 42 0.08
93 19 0.04
94 299 0.56
96 170 0.32
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.34
Consensus pattern (95 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAATACATATCTCATACATATTTCAC
ACTAGCCATTCGGCTTTACCACATATACAT
Found at i:74161065 original size:142 final size:141
Alignment explanation
Indices: 74160722--74161375 Score: 1050
Period size: 142 Copynumber: 4.6 Consensus size: 141
74160712 ATATACACAC
*
74160722 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATA-TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
74160787 CACTAGCCATTCGGCTTTACCACATATACATATGTCATTCATATTTCACACTAGCCATTCGGCTT
65 CACTAGCCATTCGGCTTTACCAC--ACACATATCTCATACATATTTCACACTAGCCATTCGGCTT
74160852 TACCACATATACAT
128 TACCACATATACAT
* *
74160866 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATA-TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
74160931 CATTAGCCATTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
65 CACTAGCCATTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
74160996 CCACATATACAT
130 CCACATATACAT
*
74161008 ATCTCATACATA-TCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCAC
1 ATCTCATACATATTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
*
74161072 ATTAGCCATTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
66 ACTAGCCATTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
74161137 CACATATACAT
131 CACATATACAT
*
74161148 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ACACATATCTCATACATATTTCA
1 ATCTCATACATA-TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
74161211 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGACTT
65 CACTAGCCATTCGGCTTTACCAC--ACACATATCTCATACATATTTCACACTAGCCATTCGGCTT
74161276 TACCACATATACAT
128 TACCACATATACAT
** * *
74161290 ATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCAC--ACACATATCTCATACATATTTCA
1 ATCTCATACATA-TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
74161353 CACTAG-CATTCGGCTTTACCACA
65 CACTAGCCATTCGGCTTTACCACA
74161376 TATTCAGTAC
Statistics
Matches: 490, Mismatches: 16, Indels: 13
0.94 0.03 0.03
Matches are distributed among these distances:
139 1 0.00
140 183 0.37
141 16 0.03
142 206 0.42
144 84 0.17
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (141 bp):
ATCTCATACATATTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC
ACTAGCCATTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTAC
CACATATACAT
Found at i:74164535 original size:40 final size:40
Alignment explanation
Indices: 74164491--74164766 Score: 444
Period size: 40 Copynumber: 6.9 Consensus size: 40
74164481 ATGCACATCA
* * *
74164491 CAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACAC
1 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACAC
* *
74164531 CAGCACGGATGCTCTTCGGGACTTAGCCCAGATATAACAC
1 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACAC
* * *
74164571 CAGAACGAATGCTCTTTGGGACTTAGCCCAGATATAACAC
1 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACAC
*
74164611 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACAT
1 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACAC
*
74164651 CAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACAC
1 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACAC
*
74164691 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACAT
1 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACAC
*
74164731 CAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
74164767 TAACTCTCAA
Statistics
Matches: 219, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 219 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACAC
Found at i:74166153 original size:37 final size:37
Alignment explanation
Indices: 74166002--74166137 Score: 245
Period size: 37 Copynumber: 3.7 Consensus size: 37
74165992 CGAATAGTCC
*
74166002 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
74166039 CCACACGTAGTCATCGGGTCTTACCTGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
74166076 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
74166113 CCACACGTAGTCATCGGGTCTTACC
1 CCACACGTAGTCATCGGGTCTTACC
74166138 TGGAATATAT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:74166340 original size:48 final size:48
Alignment explanation
Indices: 74166282--74166937 Score: 1075
Period size: 48 Copynumber: 13.9 Consensus size: 48
74166272 ATATACACAC
*
74166282 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74166330 ATCTCATACATATTTCACACTAGCCATTC-GCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
74166377 ATCTCATATATATTTCACACTAGCCATTC-GCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74166424 ATCTCATACATATTTCACACTAGCCATTC-GCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
74166471 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74166517 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74166565 ATCTCATACATA-TTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
74166612 ATCACATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
74166658 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
74166706 ATCTCATACATATTTCACACTAGCCATTCGGCTTCACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
74166752 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
74166800 ATCTCATACATATTTCACACTAGCCGTTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
74166848 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
74166894 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
74166938 TCACTACAAG
Statistics
Matches: 566, Mismatches: 32, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
46 171 0.30
47 182 0.32
48 213 0.38
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:74166433 original size:94 final size:96
Alignment explanation
Indices: 74166282--74166937 Score: 1075
Period size: 94 Copynumber: 7.0 Consensus size: 96
74166272 ATATACACAC
*
74166282 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
74166347 CACTAGCCATTC-GCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
*
74166377 ATCTCATATATATTTCACACTAGCCATTC-GCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
74166441 CACTAGCCATTC-GCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* *
74166471 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
74166534 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* *
74166565 ATCTCATACATA-TTCACACTAGCCATTCGGCTTTACCACATATACATATCACATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
74166629 CATTAGCCATTCGGCTTTACCAC--ACACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
*
74166658 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
74166723 CACTAGCCATTCGGCTTCACCAC--ACACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
74166752 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
74166817 CACTAGCCGTTCGGCTTTACCATATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
* * *
74166848 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
74166911 CACTAGCCATTCAGCTTTACCACATAT
66 CACTAGCCATTCGGCTTTACCACATAT
74166938 TCACTACAAG
Statistics
Matches: 529, Mismatches: 25, Indels: 15
0.93 0.04 0.03
Matches are distributed among these distances:
93 78 0.15
94 328 0.62
95 80 0.15
96 43 0.08
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (96 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACAT
Found at i:74166699 original size:235 final size:236
Alignment explanation
Indices: 74166276--74166937 Score: 1179
Period size: 235 Copynumber: 2.8 Consensus size: 236
74166266 GCCACAATAT
* *
74166276 ACACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
74166341 ATTTCACACTAGCCATTC-GCTTTACCACATATACATATCTCATATATATTTCACACTAGCCATT
66 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
*
74166405 C-GCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTC-GCTTTACCACATATA
131 CGGCTTTACCAC--ACACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATA
* * *
74166468 CATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC
194 CATATCTCATACATATTTCACACTAGCCATTCGGCTTCACCAC
*
74166511 ATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
*
74166576 A-TTCACACTAGCCATTCGGCTTTACCACATATACATATCACATATATATTTCACATTAGCCATT
66 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
74166640 CGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACA
131 CGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACA
74166705 TATCTCATACATATTTCACACTAGCCATTCGGCTTCACCAC
196 TATCTCATACATATTTCACACTAGCCATTCGGCTTCACCAC
74166746 ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
* *
74166811 ATTTCACACTAGCCGTTCGGCTTTACCATATATACATATCTCATATATATTTCACATTAGCCATT
66 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
74166876 CGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATAT
131 CGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATAT
74166938 TCACTACAAG
Statistics
Matches: 410, Mismatches: 13, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
234 50 0.12
235 228 0.56
236 132 0.32
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.33
Consensus pattern (236 bp):
ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATT
CGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACA
TATCTCATACATATTTCACACTAGCCATTCGGCTTCACCAC
Found at i:74184960 original size:13 final size:13
Alignment explanation
Indices: 74184942--74184968 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
74184932 GCTCAGCAGG
74184942 GACACGCCCGTGT
1 GACACGCCCGTGT
74184955 GACACGCCCGTGT
1 GACACGCCCGTGT
74184968 G
1 G
74184969 CGATAACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:74185180 original size:11 final size:11
Alignment explanation
Indices: 74185164--74185189 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
74185154 TATTTTCTCA
74185164 GTTTTTGGCTC
1 GTTTTTGGCTC
74185175 GTTTTTGGCTC
1 GTTTTTGGCTC
74185186 GTTT
1 GTTT
74185190 CTCATTCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.27, T:0.58
Consensus pattern (11 bp):
GTTTTTGGCTC
Found at i:74199505 original size:24 final size:23
Alignment explanation
Indices: 74199473--74199581 Score: 128
Period size: 24 Copynumber: 4.6 Consensus size: 23
74199463 ACCAAACGTT
* **
74199473 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
74199497 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
74199521 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
74199545 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
*
74199569 GCACACGTAGTGC
1 GCACACATAGTGC
74199582 ATTTGAGATT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
23 2 0.03
24 67 0.89
25 6 0.08
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:74199547 original size:48 final size:48
Alignment explanation
Indices: 74199473--74199581 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
74199463 ACCAAACGTT
* **
74199473 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
74199521 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
*
74199569 GCACACGTAGTGC
1 GCACACATAGTGC
74199582 ATTTGAGATT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 52 0.93
49 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:74203189 original size:25 final size:25
Alignment explanation
Indices: 74203114--74203189 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
74203104 GTGTATATAT
74203114 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
74203139 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
74203161 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
74203186 GTGA
1 GTGA
74203190 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:74203327 original size:47 final size:47
Alignment explanation
Indices: 74203087--74203319 Score: 367
Period size: 47 Copynumber: 5.0 Consensus size: 47
74203077 TTAGGATTTT
** *
74203087 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74203134 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
74203181 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
74203228 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGCCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74203275 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
74203320 TAGTGTGAAG
Statistics
Matches: 169, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 169 1.00
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:74203546 original size:37 final size:37
Alignment explanation
Indices: 74203485--74203557 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
74203475 AATATATTCA
* * *
74203485 GGGTGAGACCCGATGACTATGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCC
*
74203522 GGGTAAGACTCGATGACTACGTGTGGAGAGTATGTC
1 GGGTAAGACCCGATGACTACGTGTGGAGAGTATGTC
74203558 TGAGCTAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.26
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGAGTATGTCC
Found at i:74217138 original size:40 final size:40
Alignment explanation
Indices: 74217083--74217330 Score: 365
Period size: 40 Copynumber: 6.2 Consensus size: 40
74217073 TGAATGATAC
* * *
74217083 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
74217123 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
74217163 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
74217203 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
74217243 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
74217283 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
74217323 CC-GGCTAA
1 CCGGGCTAA
74217331 ATTCCGAAGA
Statistics
Matches: 190, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 5 0.03
40 183 0.96
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:74225342 original size:40 final size:39
Alignment explanation
Indices: 74225177--74225360 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
74225167 AAATTGAATG
* * *
74225177 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
74225217 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
74225257 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
74225297 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
74225336 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
74225361 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:74225385 original size:80 final size:81
Alignment explanation
Indices: 74225217--74225405 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
74225207 GCTGGAAATT
* * * *
74225217 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
74225282 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
74225298 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
74225361 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
74225377 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
74225406 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:74228470 original size:57 final size:55
Alignment explanation
Indices: 74228380--74228505 Score: 146
Period size: 57 Copynumber: 2.2 Consensus size: 55
74228370 TGCATACCTA
* * * * *
74228380 CATATGGCCCACTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAAT-TCACGTT
1 CATATGGCCCA-TCGACCCAATCACATTCATATGGCCCATCAGGCCCAATCTCA--TT
*
74228437 CATATGGCCCATCGACCCAATTCACATTCATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATCGACCCAA-TCACATTCATATGGCCCATCAGGCCCAATCTCATT
*
74228493 TATATGGCCCATC
1 CATATGGCCCATC
74228506 CGGCCTGAAC
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
56 21 0.35
57 36 0.60
58 3 0.05
ACGTcount: A:0.25, C:0.34, G:0.14, T:0.27
Consensus pattern (55 bp):
CATATGGCCCATCGACCCAATCACATTCATATGGCCCATCAGGCCCAATCTCATT
Found at i:74228510 original size:28 final size:28
Alignment explanation
Indices: 74228380--74228510 Score: 142
Period size: 28 Copynumber: 4.6 Consensus size: 28
74228370 TGCATACCTA
*
74228380 CATATGGCCCA-CTAGGCCCAATCTCATT
1 CATATGGCCCATC-CGGCCCAATCTCATT
*
74228408 TATATGGCCCATCCGGCCCAAT-TCACGTT
1 CATATGGCCCATCCGGCCCAATCTCA--TT
* *
74228437 CATATGGCCCAT-CGACCCAATTCACATT
1 CATATGGCCCATCCGGCCCAA-TCTCATT
**
74228465 CATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATCCGGCCCAATCTCATT
*
74228493 TATATGGCCCATCCGGCC
1 CATATGGCCCATCCGGCC
74228511 TGAACGCGTG
Statistics
Matches: 86, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
27 3 0.03
28 60 0.70
29 21 0.24
30 2 0.02
ACGTcount: A:0.24, C:0.35, G:0.15, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATCCGGCCCAATCTCATT
Found at i:74236486 original size:50 final size:51
Alignment explanation
Indices: 74236409--74236537 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
74236399 GACCATGGCA
* *
74236409 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGAAAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATG
*
74236460 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGAAAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATG
* *
74236510 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
74236538 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 47 0.65
51 25 0.35
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATG
Found at i:74236551 original size:31 final size:31
Alignment explanation
Indices: 74236513--74236630 Score: 184
Period size: 31 Copynumber: 3.8 Consensus size: 31
74236503 AAAAATGACA
*
74236513 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
74236544 AGTGAAAAGTGGTAGCCCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
74236575 AGTGAAAAGTGGTAG-TACCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCT-CCGGCTACCTGATC
* *
74236606 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
74236631 AAGTGGCAAG
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
31 79 0.99
32 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:74236734 original size:47 final size:46
Alignment explanation
Indices: 74236656--74236770 Score: 140
Period size: 47 Copynumber: 2.5 Consensus size: 46
74236646 TCCGTACAAG
* * *
74236656 ACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTGTATAAA
1 ACCATATCTGGGATATGGCATCAGTGAGATATATGATAC-GTATAAA
* * * *
74236703 ACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCGTGTAAG
1 ACCATATCTGGGATATGGCATCAGTGAGATATATGATACGTATAAA
* *
74236749 ACCATAGCTGGGCTATGGCATC
1 ACCATATCTGGGATATGGCATC
74236771 GATATATGAA
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 25 0.42
47 34 0.58
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (46 bp):
ACCATATCTGGGATATGGCATCAGTGAGATATATGATACGTATAAA
Found at i:74236800 original size:42 final size:43
Alignment explanation
Indices: 74236742--74236856 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
74236732 TATGTGATTC
*
74236742 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
74236784 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
74236826 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
74236857 GAAAATGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:74240908 original size:29 final size:28
Alignment explanation
Indices: 74240842--74240981 Score: 126
Period size: 29 Copynumber: 4.9 Consensus size: 28
74240832 TACATACCAA
*
74240842 CATATGGCCCA-CTAGGCCCAATCTCA-TT
1 CATATGGCCCATC-CGGCCCAAT-TCACTT
*
74240870 TATATGGCCCATCCGGCCCAATTCACGTT
1 CATATGGCCCATCCGGCCCAATTCAC-TT
*
74240899 CATATGGCCCATCTGGCCCAATTCACATT
1 CATATGGCCCATCCGGCCCAATTCAC-TT
* *
74240928 CATGTGGCCCATTAC-GCCCAATCTCA-TT
1 CATATGGCCCA-TCCGGCCCAAT-TCACTT
* * *
74240956 TATATTGCCCATCCGGCCCAAATCAC
1 CATATGGCCCATCCGGCCCAATTCAC
74240982 ATTATATTCA
Statistics
Matches: 92, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
27 8 0.09
28 34 0.37
29 46 0.50
30 4 0.04
ACGTcount: A:0.24, C:0.36, G:0.14, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATCCGGCCCAATTCACTT
Found at i:74241090 original size:19 final size:19
Alignment explanation
Indices: 74241066--74241102 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
74241056 CAGCCCCTCG
74241066 GGCCCATTTAGCCTATTCC
1 GGCCCATTTAGCCTATTCC
*
74241085 GGCCCATTTGGCCTATTC
1 GGCCCATTTAGCCTATTC
74241103 ACAACCCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.14, C:0.35, G:0.19, T:0.32
Consensus pattern (19 bp):
GGCCCATTTAGCCTATTCC
Found at i:74246746 original size:39 final size:39
Alignment explanation
Indices: 74246665--74246830 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 39
74246655 AAATTGAATG
* *
74246665 ATATCCGGGCTAAG-CCCGAAGACAATTATGC--TGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGG---TT
* *
74246704 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
**
74246743 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGGTT
* * *
74246783 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGGTT
74246823 ATATCCGG
1 ATATCCGG
74246831 TTATATTCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.40
40 56 0.53
41 2 0.02
42 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
Found at i:74254768 original size:39 final size:39
Alignment explanation
Indices: 74254687--74254852 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 39
74254677 AAATTGAATG
* *
74254687 ATATCCGGGCTAAG-CCCGAAGACAATTATGC--TGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGG---TT
* *
74254726 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
**
74254765 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGGTT
* * *
74254805 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGGTT
74254845 ATATCCGG
1 ATATCCGG
74254853 TTATATTCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.40
40 56 0.53
41 2 0.02
42 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
Found at i:74257236 original size:37 final size:37
Alignment explanation
Indices: 74257195--74257269 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
74257185 AAGTTAGTGT
74257195 AAGAGTATGCCTAAAGATCAATCACGAGATGGTTGTA
1 AAGAGTATGCCTAAAGATCAATCACGAGATGGTTGTA
*
74257232 AAGAGTATGCCTAAATATCAATCACGAGATGGTTGTA
1 AAGAGTATGCCTAAAGATCAATCACGAGATGGTTGTA
74257269 A
1 A
74257270 TAGCATACTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.25
Consensus pattern (37 bp):
AAGAGTATGCCTAAAGATCAATCACGAGATGGTTGTA
Found at i:74264302 original size:30 final size:30
Alignment explanation
Indices: 74264268--74264328 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
74264258 AAGCACAAAT
*
74264268 ATAATAACCATATATAAATAATA-ATGTAAA
1 ATAATAACAATATA-AAATAATATATGTAAA
* *
74264298 ATAATAATAATATAAAATAATATATTTAAA
1 ATAATAACAATATAAAATAATATATGTAAA
74264328 A
1 A
74264329 CATAAGATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (30 bp):
ATAATAACAATATAAAATAATATATGTAAA
Found at i:74264305 original size:16 final size:16
Alignment explanation
Indices: 74264284--74264319 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
74264274 ACCATATATA
*
74264284 AATAATAATGTAAAAT
1 AATAATAATATAAAAT
74264300 AATAATAATATAAAAT
1 AATAATAATATAAAAT
74264316 AATA
1 AATA
74264320 TATTTAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (16 bp):
AATAATAATATAAAAT
Found at i:74264442 original size:24 final size:24
Alignment explanation
Indices: 74264410--74264462 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
74264400 ATAATATATG
74264410 ATAAAAATATAAGTAGT-ATTTTTT
1 ATAAAAATATAAGTA-TAATTTTTT
* *
74264434 ATAATAATATATGTATAATTTTTT
1 ATAAAAATATAAGTATAATTTTTT
74264458 ATAAA
1 ATAAA
74264463 TAGATTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (24 bp):
ATAAAAATATAAGTATAATTTTTT
Found at i:74266399 original size:66 final size:68
Alignment explanation
Indices: 74266321--74266507 Score: 263
Period size: 71 Copynumber: 2.7 Consensus size: 68
74266311 TAGTACCACT
*
74266321 CATGCGACCCAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAAT
1 CATGCGACCCAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAAT
74266383 CACG
65 CACG
*
74266387 CATGCGACCCAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCCAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGA
74266452 ATCACG
63 ATCACG
*
74266458 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCCAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
74266508 GATACATCTC
Statistics
Matches: 112, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
66 13 0.12
67 6 0.05
68 1 0.01
69 1 0.01
71 91 0.81
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (68 bp):
CATGCGACCCAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATC
ACG
Found at i:74266432 original size:71 final size:71
Alignment explanation
Indices: 74266344--74266507 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
74266334 CGATTTGTCT
74266344 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
74266409 CTTTCA
66 CTTTCA
* *
74266415 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
74266480 CTTTCA
66 CTTTCA
74266486 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74266508 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:74266545 original size:71 final size:70
Alignment explanation
Indices: 74266344--74266541 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
74266334 CGATTTGTCT
* * * * *
74266344 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74266409 CTTTCA
65 CTTTCA
* * * *
74266415 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
74266480 CTTTCA
65 CTTTCA
* *
74266486 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
74266542 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74269105 original size:44 final size:44
Alignment explanation
Indices: 74269039--74269146 Score: 162
Period size: 44 Copynumber: 2.4 Consensus size: 44
74269029 GCATGCGAAA
* *
74269039 GCCAAATCAGCTATGTCTTCGATCTGCTCTCCGCCAATACAGAGAT
1 GCCAAATCTGCTA--TCTTCGATCTGCTCTCCGACAATACAGAGAT
* *
74269085 GCCAAATCTGGTATCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGAT
74269129 GCCAAATCTGCTATCTTC
1 GCCAAATCTGCTATCTTC
74269147 AACTTGTTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 46 0.81
46 11 0.19
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGAT
Found at i:74269261 original size:131 final size:132
Alignment explanation
Indices: 74269121--74269400 Score: 418
Period size: 131 Copynumber: 2.1 Consensus size: 132
74269111 CTCTGACAAT
* * *
74269121 ACAGAGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATACCATGCTGGAAT
1 ACAGGGATGCCAAATCTGCTATCTTCAACTTGTGCCCTATAAACACAGGGATACCATGCTGAAAT
* * ** * * * *
74269186 CCTCGATCTGGTTCGTTGTAAGCACAGGAGTGTCAGATCTGTTATTTTCGATCTG-TCCCTATAA
66 CCTCAATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAATCTGTTCCCTATAA
74269250 AC
131 AC
* *
74269252 ATAGGGATGCCAAATCTGCTATCTTCAACTTGTGCCCTATAAACACAGGGATGCCATGCTGAAAT
1 ACAGGGATGCCAAATCTGCTATCTTCAACTTGTGCCCTATAAACACAGGGATACCATGCTGAAAT
* *
74269317 CTTCAATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCTATCTTCAATCTGTTCCCTATAA
66 CCTCAATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAATCTGTTCCCTATAA
74269382 AC
131 AC
74269384 ACAGGGATGCCAAATCT
1 ACAGGGATGCCAAATCT
74269401 TGTTTCTTTG
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
131 105 0.80
132 27 0.20
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
ACAGGGATGCCAAATCTGCTATCTTCAACTTGTGCCCTATAAACACAGGGATACCATGCTGAAAT
CCTCAATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAATCTGTTCCCTATAA
AC
Found at i:74269292 original size:44 final size:44
Alignment explanation
Indices: 74269077--74269400 Score: 216
Period size: 44 Copynumber: 7.4 Consensus size: 44
74269067 CTCCGCCAAT
* * * * * * *
74269077 ACAGAGATGCCAAATCTGGTATCTTCGATCTGCTCTCTGA-CAAT
1 ACAGGGATGCCAAATCTGCTATCTTCAATCTGTTCCCT-ATAAAC
*
74269121 ACAGAGATGCCAAATCTGCTATCTTCAA-CTTGTTCCCTATAAAC
1 ACAGGGATGCCAAATCTGCTATCTTCAATC-TGTTCCCTATAAAC
* ** * * ** * *
74269165 ACAGGGATACC--ATGCTGGAATCCTCGATCTGGTTCGTTGTAAGC
1 ACAGGGATGCCAAAT-CTGCTATCTTCAATCT-GTTCCCTATAAAC
* * * * *
74269209 ACA-GGAGTGTCAGATCTGTTATTTTCGATCTG-TCCCTATAAAC
1 ACAGGGA-TGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAAC
* *
74269252 ATAGGGATGCCAAATCTGCTATCTTCAA-CTTGTGCCCTATAAAC
1 ACAGGGATGCCAAATCTGCTATCTTCAATC-TGTTCCCTATAAAC
** * * *
74269296 ACAGGGATGCC--ATGCTGAAATCTTCAATCTGCTTCACTGTAAGC
1 ACAGGGATGCCAAAT-CTGCTATCTTCAATCTG-TTCCCTATAAAC
* * * *
74269340 ACAGGAATGTCAGATTTGCTATCTTCAATCTGTTCCCTATAAAC
1 ACAGGGATGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAAC
74269384 ACAGGGATGCCAAATCT
1 ACAGGGATGCCAAATCT
74269401 TGTTTCTTTG
Statistics
Matches: 212, Mismatches: 52, Indels: 32
0.72 0.18 0.11
Matches are distributed among these distances:
42 5 0.02
43 55 0.26
44 122 0.58
45 26 0.12
46 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ACAGGGATGCCAAATCTGCTATCTTCAATCTGTTCCCTATAAAC
Found at i:74273814 original size:49 final size:49
Alignment explanation
Indices: 74273754--74274061 Score: 534
Period size: 49 Copynumber: 6.4 Consensus size: 49
74273744 TTTGTATGAG
74273754 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
74273803 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
74273852 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
74273901 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
74273950 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* * * *
74273997 GTGTATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
74274046 GTATA-A-ATGTGATAAG
1 GTATATATATGTGATAAG
74274062 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
47 49 0.20
48 7 0.03
49 193 0.78
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
Found at i:74285539 original size:13 final size:13
Alignment explanation
Indices: 74285517--74285556 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
74285507 TATAATAACC
74285517 ATATATAAATAATA
1 ATATA-AAATAATA
*
74285531 ATGTAAAATAATA
1 ATATAAAATAATA
74285544 ATATAAAATAATA
1 ATATAAAATAATA
74285557 TATTTAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
ATATAAAATAATA
Found at i:74290139 original size:15 final size:16
Alignment explanation
Indices: 74290112--74290149 Score: 69
Period size: 15 Copynumber: 2.4 Consensus size: 16
74290102 TCAAGCTCTC
74290112 TTTTTCTTATAATTTT
1 TTTTTCTTATAATTTT
74290128 TTTTTCTT-TAATTTT
1 TTTTTCTTATAATTTT
74290143 TTTTTCT
1 TTTTTCT
74290150 CTCTCAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTCTTATAATTTT
Found at i:74297802 original size:40 final size:40
Alignment explanation
Indices: 74297675--74297804 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
74297665 ATGCTGGAAA
* *
74297675 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
74297715 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
74297755 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
74297795 TTATATCCGG
1 TTATATCCGG
74297805 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:74306620 original size:26 final size:27
Alignment explanation
Indices: 74306591--74306641 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
74306581 GCGAGCTGTC
*
74306591 AGATAT-TGTGACGAAGTCACCAGAGT
1 AGATATATGTGACGAAGCCACCAGAGT
* *
74306617 AGATATATGTGGCGAGGCCACCAGA
1 AGATATATGTGACGAAGCCACCAGA
74306642 TTGAGCGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (27 bp):
AGATATATGTGACGAAGCCACCAGAGT
Found at i:74313122 original size:41 final size:43
Alignment explanation
Indices: 74313024--74313131 Score: 141
Period size: 41 Copynumber: 2.6 Consensus size: 43
74313014 CATATCCTAC
* *
74313024 TCCCAAACGTGGTCTTACATGTAATCACATATCGATGCCACTA
1 TCCCAAACATGGTCTTACATGTAATCAAATATCGATGCCACTA
* * *
74313067 TCCCAGACAGGGTCTTACATG-AATCAAATAT-GATGCCGA-TG
1 TCCCAAACATGGTCTTACATGTAATCAAATATCGATGCC-ACTA
74313108 TCCCAAACATGGTCTTACATGTAA
1 TCCCAAACATGGTCTTACATGTAA
74313132 CACCCCGAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
41 26 0.46
42 12 0.21
43 18 0.32
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
TCCCAAACATGGTCTTACATGTAATCAAATATCGATGCCACTA
Found at i:74315675 original size:28 final size:28
Alignment explanation
Indices: 74315639--74315697 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
74315629 CTAGGGTATA
74315639 TCGGTAATTTTACTCTTTAGGGGTAATT
1 TCGGTAATTTTACTCTTTAGGGGTAATT
*
74315667 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTACTCTTTAGGGGTAATT
74315695 TCG
1 TCG
74315698 TGATCTACGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.19, C:0.12, G:0.24, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTACTCTTTAGGGGTAATT
Found at i:74316349 original size:27 final size:27
Alignment explanation
Indices: 74316319--74316380 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
74316309 GGGCAAAATG
74316319 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
74316346 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
74316373 GTAATTTT
1 GTAATTTT
74316381 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:74316446 original size:27 final size:27
Alignment explanation
Indices: 74316363--74316461 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
74316353 TACCCTACAG
* * * *
74316363 GGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTTGGTAATTTTACAAACTAA
74316390 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAA
* *
74316417 GGGTATTTTGGTAATTTTA-ATAATTGA
1 GGGTATTTTGGTAATTTTACA-AACTAA
74316444 GGGTATTTCT-GTAATTTT
1 GGGTATTT-TGGTAATTTT
74316462 GTAAATCGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
26 1 0.02
27 62 0.97
28 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.46
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAA
Found at i:74316472 original size:27 final size:27
Alignment explanation
Indices: 74316390--74316475 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 27
74316380 TTCAAACCAT
*
74316390 GGGTATTTTGGTAATTTTACA-AA-CTAA
1 GGGTATTTTGGTAATTTTA-ATAATC-GA
*
74316417 GGGTATTTTGGTAATTTTAATAATTGA
1 GGGTATTTTGGTAATTTTAATAATCGA
*
74316444 GGGTATTTCT-GTAATTTT-GTAAATCGA
1 GGGTATTT-TGGTAATTTTAAT-AATCGA
74316471 GGGTA
1 GGGTA
74316476 AAATAGTAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
26 2 0.04
27 48 0.94
28 1 0.02
ACGTcount: A:0.29, C:0.05, G:0.23, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTAATAATCGA
Found at i:74316783 original size:27 final size:27
Alignment explanation
Indices: 74316454--74316772 Score: 404
Period size: 27 Copynumber: 11.8 Consensus size: 27
74316444 GGGTATTTCT
* **
74316454 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * **
74316481 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
74316508 GTAATTCTATAAATCGACGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
74316535 ATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
74316562 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
74316589 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
74316616 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
74316643 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
74316670 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
74316697 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
74316724 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
74316751 ATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
74316773 CTTTGGTAAT
Statistics
Matches: 252, Mismatches: 40, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 252 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:74316783 original size:54 final size:54
Alignment explanation
Indices: 74316454--74316772 Score: 449
Period size: 54 Copynumber: 5.9 Consensus size: 54
74316444 GGGTATTTCT
* ** * * * * *
74316454 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * *
74316508 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
74316562 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
74316616 ATAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
74316670 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
74316724 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
74316773 CTTTGGTAAT
Statistics
Matches: 239, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 239 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:74316799 original size:27 final size:26
Alignment explanation
Indices: 74316769--74316867 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 26
74316759 GTAAATCGGG
* *
74316769 GGTACTTTGGTAATTTTACAAGTCGAA
1 GGTA-TTTAGTAATTTTACAAATCGAA
*
74316796 GGTATTTCAGTAATTTTACAAATCGAG
1 GGTATTT-AGTAATTTTACAAATCGAA
* *
74316823 GGTATTTTAGTATTTTTACAAA-CTAA
1 GGTA-TTTAGTAATTTTACAAATCGAA
*
74316849 GGGTATTTCGGTAATTTTA
1 -GGTATTT-AGTAATTTTA
74316868 GTAAACTAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
26 8 0.13
27 49 0.82
28 3 0.05
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (26 bp):
GGTATTTAGTAATTTTACAAATCGAA
Found at i:74316809 original size:81 final size:81
Alignment explanation
Indices: 74316454--74316826 Score: 307
Period size: 81 Copynumber: 4.6 Consensus size: 81
74316444 GGGTATTTCT
** * * * * * * * * *
74316454 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
*
74316519 AATCGACGGTAAAACG
66 AATCGAGGGTAAAACG
* ** * * * * * * *
74316535 ATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
*
74316600 AATCGAGGGTAAAACA
66 AATCGAGGGTAAAACG
* * ** * * *
74316616 ATAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
74316681 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
** * * * *
74316697 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTGT
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAG-TAATTCTGT
* ****
74316761 AAATCGGGGGTACTTTG
65 AAATCGAGGGTAAAACG
* *** * *
74316778 GTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTA
1 GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTA
74316827 TTTTAGTATT
Statistics
Matches: 251, Mismatches: 40, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
80 1 0.00
81 250 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAATTTTACAAATCGAAGGTAAAACAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGAGGGTAAAACG
Found at i:74316854 original size:54 final size:54
Alignment explanation
Indices: 74316761--74316867 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
74316751 ATAATTCTGT
* * *
74316761 AAATCGGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTACTTTAGTAATTTTACAAGACGAAGGTATTTCAGTAATTTTAC
* * * *
74316815 AAATCGAGGGTATTTTAGTATTTTTACAA-ACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTACTTTAGTAATTTTACAAGACGAA-GGTATTTCAGTAATTTTA
74316868 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 3 0.07
54 42 0.93
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
AAATCGAGGGTACTTTAGTAATTTTACAAGACGAAGGTATTTCAGTAATTTTAC
Found at i:74318660 original size:27 final size:26
Alignment explanation
Indices: 74318587--74318676 Score: 83
Period size: 27 Copynumber: 3.4 Consensus size: 26
74318577 ATGCAAATCG
* *
74318587 TATTTACCAGTGGCTATGTGCCTATCA
1 TATTTACCA-TGGCTATGTGTCGATCA
* * *
74318614 TATTTATCGATGACTCTGTGTCGATCA
1 TATTTA-CCATGGCTATGTGTCGATCA
* *
74318641 TATTTACCCATGGCTGTGTGTCGATTA
1 TATTTA-CCATGGCTATGTGTCGATCA
74318668 TA-TTACCAT
1 TATTTACCAT
74318677 CGCTGATGGC
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 4 0.08
26 3 0.06
27 43 0.83
28 2 0.04
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (26 bp):
TATTTACCATGGCTATGTGTCGATCA
Found at i:74320184 original size:10 final size:10
Alignment explanation
Indices: 74320141--74320177 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
74320131 AGGCCCGAAT
74320141 GGCCCAACTC
1 GGCCCAACTC
74320151 GGCCCAACTC
1 GGCCCAACTC
74320161 GGCCCAACGT-
1 GGCCCAAC-TC
74320171 GGCCCAA
1 GGCCCAA
74320178 TACGGCCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 25 0.96
11 1 0.04
ACGTcount: A:0.22, C:0.46, G:0.24, T:0.08
Consensus pattern (10 bp):
GGCCCAACTC
Found at i:74325614 original size:24 final size:24
Alignment explanation
Indices: 74325587--74325717 Score: 158
Period size: 24 Copynumber: 5.5 Consensus size: 24
74325577 CAATTCACAT
* *
74325587 ACATATTGACATTCCAA-TCCGCAC
1 ACATAGTGCCATT-CAAGTCCGCAC
* *
74325611 ACATAGTGCCATAT-AAATCTGCAC
1 ACATAGTGCCAT-TCAAGTCCGCAC
* *
74325635 ACATAGTGCCATACAATTCCGCAC
1 ACATAGTGCCATTCAAGTCCGCAC
*
74325659 ACATAGTGTCATTCAAGTCCGCAC
1 ACATAGTGCCATTCAAGTCCGCAC
*
74325683 ACATAGTGCCATACAAGTCCGCAC
1 ACATAGTGCCATTCAAGTCCGCAC
74325707 ACATAGTGCCA
1 ACATAGTGCCA
74325718 AAGTCATTTC
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
23 2 0.02
24 90 0.97
25 1 0.01
ACGTcount: A:0.34, C:0.31, G:0.14, T:0.22
Consensus pattern (24 bp):
ACATAGTGCCATTCAAGTCCGCAC
Found at i:74325639 original size:48 final size:48
Alignment explanation
Indices: 74325604--74325717 Score: 176
Period size: 48 Copynumber: 2.4 Consensus size: 48
74325594 GACATTCCAA
*
74325604 TCCGCACACATAGTGCCATATAAATCTGCACACATAGTGCCATACAAT
1 TCCGCACACATAGTGCCATATAAATCTGCACACATAGTGCCATACAAG
* * *
74325652 TCCGCACACATAGTGTCAT-TCAAGTCCGCACACATAGTGCCATACAAG
1 TCCGCACACATAGTGCCATAT-AAATCTGCACACATAGTGCCATACAAG
74325700 TCCGCACACATAGTGCCA
1 TCCGCACACATAGTGCCA
74325718 AAGTCATTTC
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 1 0.02
48 59 0.98
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.21
Consensus pattern (48 bp):
TCCGCACACATAGTGCCATATAAATCTGCACACATAGTGCCATACAAG
Found at i:74325663 original size:72 final size:72
Alignment explanation
Indices: 74325557--74325717 Score: 218
Period size: 72 Copynumber: 2.2 Consensus size: 72
74325547 CCATGTTAGC
* * *
74325557 CCGCACACATAGTGCCTTAGCAATTCACATACATATTGACATTCCAA-TCCGCACACATAGTGCC
1 CCGCACACATAGTGCCATAGCAATTCACACACATAGTGACATT-CAAGTCCGCACACATAGTGCC
*
74325621 ATATAAAT
65 ATACAAAT
* * *
74325629 CTGCACACATAGTGCCATA-CAATTCCGCACACATAGTGTCATTCAAGTCCGCACACATAGTGCC
1 CCGCACACATAGTGCCATAGCAATT-CACACACATAGTGACATTCAAGTCCGCACACATAGTGCC
*
74325693 ATACAAGT
65 ATACAAAT
74325701 CCGCACACATAGTGCCA
1 CCGCACACATAGTGCCA
74325718 AAGTCATTTC
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
71 8 0.10
72 70 0.90
ACGTcount: A:0.33, C:0.31, G:0.14, T:0.22
Consensus pattern (72 bp):
CCGCACACATAGTGCCATAGCAATTCACACACATAGTGACATTCAAGTCCGCACACATAGTGCCA
TACAAAT
Found at i:74331681 original size:19 final size:19
Alignment explanation
Indices: 74331659--74331698 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
74331649 TTTACTTTTT
74331659 CCACCAATGCTATGAAATC
1 CCACCAATGCTATGAAATC
74331678 CCACCAATGCTATGAAATC
1 CCACCAATGCTATGAAATC
74331697 CC
1 CC
74331699 GCTCCCTCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.35, G:0.10, T:0.20
Consensus pattern (19 bp):
CCACCAATGCTATGAAATC
Found at i:74334042 original size:40 final size:39
Alignment explanation
Indices: 74333990--74334163 Score: 197
Period size: 40 Copynumber: 4.4 Consensus size: 39
74333980 CGATTGTCTT
* * *
74333990 GGGACATT-GCCCGGTTATAGTGATTCGCACAATTGCCTTC
1 GGGAC-TTAGCCCGGTT-TAGTAACTCGCACAAATGCCTTC
* *
74334030 GGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTC
1 GGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGCCTTC
* *
74334070 GGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGCCTTC
* * * *
74334110 GGGACTTAACCCGGTTTAGTCACTTAGCACAAAAGCCTTC
1 GGGACTTAGCCCGGTTTAGTAAC-TCGCACAAATGCCTTC
74334150 GGGACTTAGCCCGG
1 GGGACTTAGCCCGG
74334164 ATACCATTCG
Statistics
Matches: 116, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 9 0.08
40 105 0.91
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (39 bp):
GGGACTTAGCCCGGTTTAGTAACTCGCACAAATGCCTTC
Found at i:74343674 original size:38 final size:35
Alignment explanation
Indices: 74343615--74343732 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
74343605 TCAATCATGC
*
74343615 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
74343654 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
74343685 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
74343716 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
74343733 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:74343676 original size:31 final size:31
Alignment explanation
Indices: 74343638--74343732 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
74343628 CCTTTTCATA
*
74343638 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
74343669 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
74343700 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
74343731 TT
1 TT
74343733 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:74343975 original size:24 final size:24
Alignment explanation
Indices: 74343924--74344066 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
74343914 GCTTTATCAT
*
74343924 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
74343949 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
74343973 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
74343996 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
74344020 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
74344044 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74344067 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:74344003 original size:47 final size:48
Alignment explanation
Indices: 74343924--74344065 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
74343914 GCTTTATCAT
* *
74343924 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
74343973 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
74344020 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
74344066 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:74344024 original size:71 final size:72
Alignment explanation
Indices: 74343923--74344066 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
74343913 TGCTTTATCA
*
74343923 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
74343988 GCCCTTT
66 GCCCTTT
* * **
74343995 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
74344058 AGCCCTTT
65 AGCCCTTT
74344066 T
1 T
74344067 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:74344142 original size:20 final size:20
Alignment explanation
Indices: 74344117--74344176 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
74344107 TATGATTACC
74344117 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
74344137 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
74344157 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
74344177 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:74344147 original size:11 final size:11
Alignment explanation
Indices: 74344117--74344171 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
74344107 TATGATTACC
74344117 TCATGTGCATA
1 TCATGTGCATA
*
74344128 TCA--TACATA
1 TCATGTGCATA
74344137 TCATGTGCATA
1 TCATGTGCATA
* *
74344148 TCA--TACATT
1 TCATGTGCATA
74344157 TCATGTGCATA
1 TCATGTGCATA
74344168 TCAT
1 TCAT
74344172 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:74344251 original size:25 final size:25
Alignment explanation
Indices: 74344219--74344266 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74344209 ATACATAAAC
* * *
74344219 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74344244 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74344267 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74351802 original size:38 final size:35
Alignment explanation
Indices: 74351743--74351860 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
74351733 TCAATCATGC
*
74351743 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
74351782 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
74351813 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
74351844 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
74351861 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:74351804 original size:31 final size:31
Alignment explanation
Indices: 74351766--74351860 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
74351756 CCTTTTCATA
*
74351766 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
74351797 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
74351828 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
74351859 TT
1 TT
74351861 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:74352131 original size:23 final size:24
Alignment explanation
Indices: 74352052--74352217 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
74352042 GCTTTATCAT
* *
74352052 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
74352077 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
74352101 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
74352124 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
74352148 ATAACTGGGGCATAAG-CCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
74352171 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
74352195 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74352218 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 75 0.56
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:74352131 original size:47 final size:48
Alignment explanation
Indices: 74352052--74352217 Score: 248
Period size: 47 Copynumber: 3.5 Consensus size: 48
74352042 GCTTTATCAT
* * **
74352052 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTG
74352101 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
*
74352148 ATAACTGGGGCATAAG-CCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
74352195 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74352218 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
46 6 0.05
47 77 0.70
48 15 0.14
49 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:74352293 original size:20 final size:20
Alignment explanation
Indices: 74352268--74352327 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
74352258 TATGATTACC
74352268 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
74352288 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
74352308 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
74352328 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:74352298 original size:11 final size:11
Alignment explanation
Indices: 74352268--74352322 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
74352258 TATGATTACC
74352268 TCATGTGCATA
1 TCATGTGCATA
*
74352279 TCA--TACATA
1 TCATGTGCATA
74352288 TCATGTGCATA
1 TCATGTGCATA
* *
74352299 TCA--TACATT
1 TCATGTGCATA
74352308 TCATGTGCATA
1 TCATGTGCATA
74352319 TCAT
1 TCAT
74352323 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:74352402 original size:25 final size:25
Alignment explanation
Indices: 74352370--74352417 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74352360 ATACATAAAC
* * *
74352370 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74352395 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74352418 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74354430 original size:27 final size:27
Alignment explanation
Indices: 74354393--74354455 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
74354383 CCATTTCAAA
*
74354393 TGTC-CACACGGCCTATGACACGAGTG
1 TGTCTCACACGGCCTATGACACGAGCG
*
74354419 TGTCTCACACGGCCTATGACACGGGCG
1 TGTCTCACACGGCCTATGACACGAGCG
74354446 TGTCTCACAC
1 TGTCTCACAC
74354456 AGCCATGCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.21, C:0.33, G:0.25, T:0.21
Consensus pattern (27 bp):
TGTCTCACACGGCCTATGACACGAGCG
Found at i:74357375 original size:48 final size:48
Alignment explanation
Indices: 74357126--74357498 Score: 239
Period size: 48 Copynumber: 7.8 Consensus size: 48
74357116 GTAGGATTCT
* ** * * *
74357126 GATGCCATGCCCCAGACATGGTCTTACACTTTCTCATA-CATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATC-TCGAGGCC
** * * * *
74357173 GATGCCACATCCCAGACATGGTCTTACA-TTGACTATCGCA-ATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-C--TCACATCTCGAGGCC
* * * * * *
74357222 GACGCCATGTCTCAAACATGGTCTTACACTGGCTCTCACATATCCG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG--CTCACATCT-CGAGGCC
* * * *
74357272 AATGCCATGTCCTA-AGCATGGTCTTACACT-G-ACACATCTC-ATAGCC
1 GATGCCATGTCCCAGA-CATGGTCTTACACTAGCTCACATCTCGA-GGCC
*
74357318 AATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAGGCC
* * ** * * *
74357366 GATGCCATGTCCTAGACATGGTCCTACACTAGCTCTTATCTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAGGCC
* * * * *
74357414 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-CTCGAGGCC
* *
74357462 GATG-CATGTCACAGACAT-GTCTTACACTAGCACACAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT
74357499 GTCACGCAAT
Statistics
Matches: 260, Mismatches: 50, Indels: 33
0.76 0.15 0.10
Matches are distributed among these distances:
45 1 0.00
46 54 0.21
47 41 0.16
48 95 0.37
49 36 0.14
50 30 0.12
51 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAGGCC
Found at i:74357466 original size:96 final size:95
Alignment explanation
Indices: 74357124--74357495 Score: 304
Period size: 96 Copynumber: 3.9 Consensus size: 95
74357114 GGGTAGGATT
* * ** * ** *
74357124 CTGATGCCATGCCCCAGACATGGTCTTACACT--TTCTCATACATC-AAGTCGATGCCACATCCC
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATCGTGGCCGATGCCATGTCCT
* *
74357186 AGACATGGTCTTACA-TTG-ACTATCGCAATCGAGG
65 AGACATGGTCTTACACTAGCAC-ATCTC-AT--A-G
* * * * *
74357220 CTGACGCCATGTCTCAAACATGGTCTTACACTGGCTCTCACATATCCGT-GCCAATGCCATGTCC
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-CGTGGCCGATGCCATGTCC
74357284 TA-AGCATGGTCTTACACT-GACACATCTCATAG
64 TAGA-CATGGTCTTACACTAG-CACATCTCATAG
** * * * *
74357316 CCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-CTCGAGGCCGATGCCATGTCCTA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCCATGTCCTA
* *
74357380 GACATGGTCCTACACTAGCTCTTATCTCA-ATG
66 GACATGGTCTTACACTAGCAC--ATCTCATA-G
*
74357412 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATG-CATGTCAC-
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCCATGTC-CT
74357474 AGACAT-GTCTTACACTAGCACA
65 AGACATGGTCTTACACTAGCACA
74357496 CATGTCACGC
Statistics
Matches: 224, Mismatches: 36, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
92 1 0.00
93 2 0.01
94 45 0.20
95 15 0.07
96 115 0.51
97 2 0.01
98 9 0.04
99 28 0.12
100 5 0.02
101 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (95 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCCATGTCCTA
GACATGGTCTTACACTAGCACATCTCATAG
Found at i:74363649 original size:27 final size:28
Alignment explanation
Indices: 74363592--74363661 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
74363582 AAACTTGTAC
*
74363592 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
74363620 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
74363647 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74363662 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74363672 original size:27 final size:27
Alignment explanation
Indices: 74363592--74363673 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
74363582 AAACTTGTAC
* * *
74363592 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
74363620 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
74363647 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74363674 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74371587 original size:27 final size:28
Alignment explanation
Indices: 74371530--74371599 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
74371520 AAACTTGTAC
*
74371530 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
74371558 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
74371585 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74371600 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74371610 original size:27 final size:27
Alignment explanation
Indices: 74371530--74371611 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
74371520 AAACTTGTAC
* * *
74371530 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
74371558 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
74371585 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74371612 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74373201 original size:49 final size:51
Alignment explanation
Indices: 74373066--74373213 Score: 246
Period size: 52 Copynumber: 2.9 Consensus size: 51
74373056 TCCTTATAGT
* *
74373066 CAAAGCTACCTTCTTCACAAAGTGGCCTTCACATAGTACCGCACTTGTGAC
1 CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
74373117 CAAAGCTATCTTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
1 CAAAGCTATC-TTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
*
74373169 C-AAGCTATC-TCTTCTCAAAGTGGCCTTCACATAGTACCACACTTG
1 CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTG
74373214 AGTCACTAGT
Statistics
Matches: 93, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
49 35 0.38
51 17 0.18
52 41 0.44
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (51 bp):
CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
Found at i:74379856 original size:15 final size:14
Alignment explanation
Indices: 74379822--74379854 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
74379812 CTCAAATTTA
74379822 ATTTTAAAAAAATT
1 ATTTTAAAAAAATT
74379836 ATTTTAAAAAAATT
1 ATTTTAAAAAAATT
74379850 ATTTT
1 ATTTT
74379855 TATACAAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTTTAAAAAAATT
Found at i:74384638 original size:6 final size:6
Alignment explanation
Indices: 74384629--74384655 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
74384619 AATATAATAA
74384629 TAAATT TAAATT TAAATT TAAATT TAA
1 TAAATT TAAATT TAAATT TAAATT TAA
74384656 TATTAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TAAATT
Found at i:74385599 original size:9 final size:10
Alignment explanation
Indices: 74385573--74385598 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
74385563 AATTTATGTG
74385573 TTTTTTTATA
1 TTTTTTTATA
74385583 TTTTTTTATA
1 TTTTTTTATA
74385593 TTTTTT
1 TTTTTT
74385599 AGAATTAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTATA
Found at i:74397993 original size:11 final size:11
Alignment explanation
Indices: 74397977--74398002 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
74397967 ATTAAAGAGT
74397977 AATTTGTATGA
1 AATTTGTATGA
74397988 AATTTGTATGA
1 AATTTGTATGA
74397999 AATT
1 AATT
74398003 GCTTTAGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (11 bp):
AATTTGTATGA
Found at i:74401443 original size:79 final size:79
Alignment explanation
Indices: 74401332--74401556 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 79
74401322 GCTACTCGTT
* * * *
74401332 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGGTCAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGAACTTAGCCCGGATATAGTAACTTGG-CAAATGCCTTCGGGACTTAGCCCGG
74401397 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* * * *
74401412 CCAATGCCTTCGG-GCTTAGCCCGGA-ATTAGTAACTTGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGAACTTAGCCCGGATA-TAGTAACTTG-GCAAATGCCTTCGGGA-CTTAGCCC
74401474 GGATTTAGTAACTCGCA
63 GGATTTAGTAACTCGCA
* * * * *
74401491 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGAACTTAGCCCGGATATAGTAACTTGGCA-AATGCCTTCGGGACTTAGCCCGG
74401556 A
65 A
74401557 CATCATTCGA
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
78 4 0.03
79 66 0.54
80 48 0.39
81 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGAACTTAGCCCGGATATAGTAACTTGGCAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:74401516 original size:119 final size:120
Alignment explanation
Indices: 74401332--74401556 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
74401322 GCTACTCGTT
**
74401332 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGGTCAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
74401397 ATTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCA
66 ATATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCA
* * * **
74401451 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
74401514 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
74401557 CATCATTCGA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 3 0.03
119 71 0.78
120 17 0.19
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTTGCA
Found at i:74401556 original size:40 final size:41
Alignment explanation
Indices: 74401332--74401556 Score: 243
Period size: 40 Copynumber: 5.6 Consensus size: 41
74401322 GCTACTCGTT
* * * **
74401332 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAAC-TCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* *
74401372 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
*
74401412 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTCGCA
* *
74401451 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTCGCA
* * *
74401491 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTCGCA
74401532 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74401557 CATCATTCGA
Statistics
Matches: 160, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 116 0.73
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
Found at i:74407622 original size:39 final size:39
Alignment explanation
Indices: 74407541--74407731 Score: 319
Period size: 39 Copynumber: 4.9 Consensus size: 39
74407531 TATGGTAACC
* * * *
74407541 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
74407581 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
74407620 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
74407659 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
74407698 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
74407732 CTCGAACATT
Statistics
Matches: 143, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 126 0.88
40 17 0.12
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:74413514 original size:29 final size:28
Alignment explanation
Indices: 74413482--74413584 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
74413472 GTGACGAGAT
* *
74413482 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
74413511 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
74413540 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
74413569 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74413585 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:74420192 original size:39 final size:39
Alignment explanation
Indices: 74420148--74420286 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 39
74420138 GGACTAAGAT
74420148 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
74420187 TCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGTTAAGTC
** *
74420227 CCGAAGGCATTCATGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AACC-GGGTTAAGTC
*
74420267 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTTGTGCGAGT
74420287 CGTTATATCC
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 36 0.41
40 45 0.51
41 7 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:74424555 original size:29 final size:28
Alignment explanation
Indices: 74424523--74424625 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
74424513 GTGACGAGAT
* *
74424523 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
74424552 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
74424581 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
74424610 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74424626 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:74426885 original size:79 final size:79
Alignment explanation
Indices: 74426785--74427009 Score: 258
Period size: 79 Copynumber: 2.8 Consensus size: 79
74426775 GCTACTCGTT
* * *
74426785 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGAACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
*
74426850 ATTTAGTAACTTACA
65 ATTTAGTAACTCACA
* * * * * *
74426865 CCAATGCCTTCGG-GCTTAGCCTGGAATTAGTAACTTGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGAACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCTTCGGGA-CTTAGCCCG
*
74426928 GATTTAGTAACTCGCA
64 GATTTAGTAACTCACA
* * *
74426944 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGAACTTAGCCCGG-TATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCG
74427008 GA
64 GA
74427010 CATCATTCGA
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
78 4 0.03
79 63 0.52
80 42 0.35
81 12 0.10
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGAACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCACA
Found at i:74426969 original size:119 final size:120
Alignment explanation
Indices: 74426785--74427005 Score: 315
Period size: 119 Copynumber: 1.9 Consensus size: 120
74426775 GCTACTCGTT
74426785 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
74426850 ATTTAGTAACTTA-CACCAATGCCTTCGGG-CTTAGCCTGGAATTAGTAACTTGCA
66 ATATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCTGGAATTAGTAACTTGCA
* * * **
74426904 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
74426967 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
74427006 CGGACATCAT
Statistics
Matches: 90, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
118 3 0.03
119 76 0.84
120 11 0.12
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (120 bp):
CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCTGGAATTAGTAACTTGCA
Found at i:74427009 original size:40 final size:41
Alignment explanation
Indices: 74426785--74427009 Score: 243
Period size: 40 Copynumber: 5.6 Consensus size: 41
74426775 GCTACTCGTT
* * * *
74426785 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* *
74426825 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* *
74426865 CCAATGCCTTCGGG-CTTAGCCTGGA-ATTAGTAACTT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTAGCA
* * *
74426904 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
* *
74426944 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
74426985 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74427010 CATCATTCGA
Statistics
Matches: 158, Mismatches: 18, Indels: 18
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 31 0.20
40 113 0.72
41 12 0.08
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
Found at i:74434105 original size:13 final size:14
Alignment explanation
Indices: 74434087--74434117 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
74434077 TATGAAATCA
74434087 CCAAAA-TTAAAGT
1 CCAAAATTTAAAGT
74434100 CCAAAATTTAAAGT
1 CCAAAATTTAAAGT
74434114 CCAA
1 CCAA
74434118 TGTCCATTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.52, C:0.19, G:0.06, T:0.23
Consensus pattern (14 bp):
CCAAAATTTAAAGT
Found at i:74435326 original size:15 final size:15
Alignment explanation
Indices: 74435306--74435335 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
74435296 TGATGTAGAG
74435306 CTTTAACAGAGACAA
1 CTTTAACAGAGACAA
74435321 CTTTAACAGAGACAA
1 CTTTAACAGAGACAA
74435336 AGTATGCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (15 bp):
CTTTAACAGAGACAA
Found at i:74438576 original size:63 final size:63
Alignment explanation
Indices: 74438473--74438602 Score: 199
Period size: 63 Copynumber: 2.1 Consensus size: 63
74438463 AACAAAGGAA
* *
74438473 GGACTTAAACTTGAATCAACCAAGAAGAAGGATCCAATCATATGCTATGAATGCAAGAAGCCG
1 GGACTCAAACTTGAATCAACCAAGAAGAAGGATCCAATCATATGCTATGAATGAAAGAAGCCG
* * *
74438536 GGACTCAAGCTTGAATCTACCAAGAAGATGGAT-CATATCATATGCTATGAATGAAAGAAGCCG
1 GGACTCAAACTTGAATCAACCAAGAAGAAGGATCCA-ATCATATGCTATGAATGAAAGAAGCCG
74438599 GGAC
1 GGAC
74438603 ACATCAAGTT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
62 2 0.03
63 59 0.97
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.20
Consensus pattern (63 bp):
GGACTCAAACTTGAATCAACCAAGAAGAAGGATCCAATCATATGCTATGAATGAAAGAAGCCG
Found at i:74441389 original size:39 final size:40
Alignment explanation
Indices: 74441308--74441502 Score: 178
Period size: 40 Copynumber: 4.9 Consensus size: 40
74441298 CATTGGAATG
* * * *
74441308 ATATCCGGGCTAAGTCCCGAAGGCAATT-ATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
*
74441348 ATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
* * **
74441387 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
* * * * * *
74441427 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
* * * * * *
74441467 ATAACCGGGCTAGGTCCCGAAGACAATCGAGCGAGT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
74441503 CGCTATATCC
Statistics
Matches: 127, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
38 3 0.02
39 31 0.24
40 93 0.73
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
Found at i:74441408 original size:79 final size:80
Alignment explanation
Indices: 74441308--74441460 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 80
74441298 CATTGGAATG
* * ** *
74441308 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGA-CCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
74441372 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
74441387 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
74441452 ATCGTGCGA
66 ATCGTGCGA
74441461 ATCACTATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 46 0.73
80 17 0.27
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:74441486 original size:80 final size:79
Alignment explanation
Indices: 74441312--74441493 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 79
74441302 GGAATGATAT
* ** * *
74441312 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCGAAGGCAATCGT
* *** *
74441377 GCGAGTTGTTATAT
66 GCGAATCACTATAA
* * * * *
74441391 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGA-CCGAAGGCAATCG
74441456 TGCGAATCACTATAA
65 TGCGAATCACTATAA
* *
74441471 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
74441494 CGAGCGAGTC
Statistics
Matches: 83, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
79 42 0.51
80 41 0.49
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCGAAGGCAATCGT
GCGAATCACTATAA
Found at i:74452969 original size:40 final size:40
Alignment explanation
Indices: 74452910--74453096 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
74452900 CATTGGAATG
* * * *
74452910 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
74452950 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
74452990 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
74453030 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
74453070 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
74453097 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:74453012 original size:80 final size:80
Alignment explanation
Indices: 74452910--74453063 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
74452900 CATTGGAATG
* * ** *
74452910 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
74452975 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
74452990 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
74453055 ATCGTGCGA
66 ATCGTGCGA
74453064 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:74453078 original size:80 final size:80
Alignment explanation
Indices: 74452914--74453096 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
74452904 GGAATGATAT
* ** * *
74452914 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
74452979 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
74452994 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
74453059 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
74453074 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
74453097 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:74453116 original size:80 final size:80
Alignment explanation
Indices: 74452914--74453131 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
74452904 GGAATGATAT
* * * * * * * *
74452914 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
74452978 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
74452994 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
74453059 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
74453074 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
74453132 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:74459103 original size:49 final size:49
Alignment explanation
Indices: 74458998--74459163 Score: 219
Period size: 49 Copynumber: 3.4 Consensus size: 49
74458988 GGGTTATGTT
* * *
74458998 TGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGTATCGAGATATG
1 TGATCCCATGTAAGACCATATCT-GGATATGGCATTGGCATCGATATATG
* * * *
74459048 TGATCCCATGTAAGACCATTTCTGGAAATGGTATTGGCATTGATATATG
1 TGATCCCATGTAAGACCATATCTGGATATGGCATTGGCATCGATATATG
74459097 TGATCCCATGTAAGACCATATCTGAGATATGGCATTGGCATCGATATA--
1 TGATCCCATGTAAGACCATATCTG-GATATGGCATTGGCATCGATATATG
* *
74459145 TGATCTCGTGTAAGACCAT
1 TGATCCCATGTAAGACCAT
74459164 GCTGGGACAT
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
48 17 0.17
49 44 0.43
50 42 0.41
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (49 bp):
TGATCCCATGTAAGACCATATCTGGATATGGCATTGGCATCGATATATG
Found at i:74459195 original size:41 final size:42
Alignment explanation
Indices: 74459132--74459211 Score: 121
Period size: 41 Copynumber: 1.9 Consensus size: 42
74459122 GATATGGCAT
74459132 TGGCATCGATATATGATCTCGTGTAAGACCA-TGCTGGGACA
1 TGGCATCGATATATGATCTCGTGTAAGACCATTGCTGGGACA
74459173 TGGCATCGATATGA-GA-CATCGTGTAAGACCATTGCTGGG
1 TGGCATCGATAT-ATGATC-TCGTGTAAGACCATTGCTGGG
74459212 CTATTAGCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
40 1 0.03
41 27 0.75
42 8 0.22
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (42 bp):
TGGCATCGATATATGATCTCGTGTAAGACCATTGCTGGGACA
Found at i:74464471 original size:40 final size:40
Alignment explanation
Indices: 74464413--74464578 Score: 233
Period size: 40 Copynumber: 4.2 Consensus size: 40
74464403 ACTCGAATTC
* *
74464413 TCGCACACTAAGTTCCATACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* *
74464453 TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCGAG
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* * *
74464493 TCGCACATTAAGTGCCATACATAGCTGAAGCTATCTTGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* * * *
74464533 TCGCACACCAAGTGCCATACAGAGTCGAAGCTATCTTGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
74464573 TCGCAC
1 TCGCAC
74464579 GTAGTCGAAT
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 112 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
Found at i:74471581 original size:28 final size:29
Alignment explanation
Indices: 74471541--74471639 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
74471531 GTAATAAGCC
*
74471541 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
74471569 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
74471597 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
74471626 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74471640 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:74476222 original size:24 final size:24
Alignment explanation
Indices: 74476190--74476276 Score: 113
Period size: 24 Copynumber: 3.6 Consensus size: 24
74476180 AATCTCAAAT
*
74476190 GCACTATGTGTGCAATTTACTATG
1 GCACTATGTGTGCAATTTACTATA
*
74476214 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCAATTTACTATA
** *
74476238 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGC-AATTTACTATA
74476262 GCACTATGTGTGCAA
1 GCACTATGTGTGCAA
74476277 CGTTCGGTTG
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 2 0.04
24 49 0.88
25 5 0.09
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (24 bp):
GCACTATGTGTGCAATTTACTATA
Found at i:74478412 original size:27 final size:26
Alignment explanation
Indices: 74478372--74478482 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
74478362 AGGGAGCGTC
*
74478372 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
74478399 CTGGTGGCTCTGCCACATGTTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
74478426 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
74478454 CTAG-GACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
74478479 CTGG
1 CTGG
74478483 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
25 4 0.06
26 10 0.14
27 51 0.72
28 6 0.08
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:74478464 original size:54 final size:53
Alignment explanation
Indices: 74478372--74478482 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 53
74478362 AGGGAGCGTC
* * *
74478372 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATGTTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACAT-TATCTGTT
* * *
74478426 CTGGTGGCTCTGCCACGATTATCTGTATCTAG-GACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATTATCTGTT
74478479 CTGG
1 CTGG
74478483 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 11 0.22
54 34 0.68
55 5 0.10
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATTATCTGTT
Found at i:74485158 original size:22 final size:22
Alignment explanation
Indices: 74485130--74485179 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
74485120 TTCTCTTAAT
74485130 TTCTCTCATCATCTTTGGCTGA
1 TTCTCTCATCATCTTTGGCTGA
74485152 TTCTCTCATCATCTTTGGCTGA
1 TTCTCTCATCATCTTTGGCTGA
74485174 TTCTCT
1 TTCTCT
74485180 TATCCTCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.12, C:0.28, G:0.12, T:0.48
Consensus pattern (22 bp):
TTCTCTCATCATCTTTGGCTGA
Found at i:74486278 original size:27 final size:27
Alignment explanation
Indices: 74486238--74486342 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
74486228 AGGAAGCGTC
* *
74486238 CTGGTAGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
74486265 CTGGTGGCTCTGCCACATATT-TCT-ATT
1 CTGGTGGCTCTGCCACA-ATTATCTGA-T
*
74486292 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
74486320 CTGGTGACTCTGTCAC-ATTATCT
1 CTGGTGGCTCTGCCACAATTATCT
74486343 ATTCTGGCAG
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
26 4 0.06
27 45 0.66
28 18 0.26
29 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:74486344 original size:54 final size:54
Alignment explanation
Indices: 74486238--74486358 Score: 154
Period size: 54 Copynumber: 2.2 Consensus size: 54
74486228 AGGAAGCGTC
* *
74486238 CTGGTAGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTATT
1 CTGGTAGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * * *
74486292 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTATT
1 CTGGTAGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
* *
74486346 CTGGCAGCCATGC
1 CTGGTAGCTATGC
74486359 TGCATATTTC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 38 0.68
55 18 0.32
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.36
Consensus pattern (54 bp):
CTGGTAGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:74492362 original size:45 final size:44
Alignment explanation
Indices: 74492307--74492391 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
74492297 CCAAAACATG
* *
74492307 TGTCATATATATCACGAACTCAGACCATAACTCAATGAGTTTGGA
1 TGTCACATATATCACGAACTCAGA-CACAACTCAATGAGTTTGGA
* *
74492352 TGTCACATATATCATGAACTCAGACACAATTCAATGAGTT
1 TGTCACATATATCACGAACTCAGACACAACTCAATGAGTT
74492392 CAGATCATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 14 0.39
45 22 0.61
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.29
Consensus pattern (44 bp):
TGTCACATATATCACGAACTCAGACACAACTCAATGAGTTTGGA
Found at i:74495465 original size:22 final size:22
Alignment explanation
Indices: 74495427--74495476 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
74495417 TTTGAGTAAA
*
74495427 TTATTTAATTGAGAAATCA-AT
1 TTATTTAATTAAGAAATCATAT
* *
74495448 TTATTTAAATTAATAAATGATAT
1 TTATTT-AATTAAGAAATCATAT
74495471 TTATTT
1 TTATTT
74495477 TGGAAAATAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 6 0.25
22 10 0.42
23 8 0.33
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (22 bp):
TTATTTAATTAAGAAATCATAT
Found at i:74502188 original size:21 final size:21
Alignment explanation
Indices: 74502163--74502215 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
74502153 TTTTATTTTT
*
74502163 CACACGGGCGTGTGCCTTAGA
1 CACACGGGCGTGTCCCTTAGA
* *
74502184 CACACGGCCGTGTCCCTTAGC
1 CACACGGGCGTGTCCCTTAGA
*
74502205 CACACGAGCGT
1 CACACGGGCGT
74502216 ATAAGATTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.36, G:0.28, T:0.17
Consensus pattern (21 bp):
CACACGGGCGTGTCCCTTAGA
Done.