Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 239 of 433
Found at i:74509504 original size:40 final size:39
Alignment explanation
Indices: 74509459--74509646 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 39
74509449 ATAACCACAA
* * *** *
74509459 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTC
74509499 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
74509539 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
74509579 GCATAAATGCCTTCGGGACTTAGCCCGGATATAATC-ACTA
1 GCA-CAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* **
74509619 GCATAAATGCCTTCGGAACTTAGCCCGG
1 GCA-CAATGCCTTCGGGTCTTAGCCCGG
74509647 GTATCATTCA
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
40 131 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:74509566 original size:80 final size:80
Alignment explanation
Indices: 74509446--74509646 Score: 242
Period size: 80 Copynumber: 2.5 Consensus size: 80
74509436 AATTTAGCCA
* * * * * ** *
74509446 GATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCT
1 GATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCCT
*
74509511 TCGGGTCTTAGCCCG
66 TCGGGACTTAGCCCG
* * * *
74509526 GATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCC
1 GATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCC
74509590 TTCGGGACTTAGCCCG
65 TTCGGGACTTAGCCCG
* **
74509606 GATATAATCACTAGCATAAATGCCTTCGGAACTTAGCCCGG
1 GATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
74509647 GTATCATTCA
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.01
80 100 0.98
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
GATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCCT
TCGGGACTTAGCCCG
Found at i:74516388 original size:250 final size:250
Alignment explanation
Indices: 74515941--74516447 Score: 978
Period size: 250 Copynumber: 2.0 Consensus size: 250
74515931 ATTGAATTCA
74515941 CTTACAATAATAGTTTTCAATCAAGCATTAAGATGGCACCTTACGAGGCTTTGTACGGTTGTAAA
1 CTTA-AATAATAGTTTTCAATCAAGCATTAAGATGGCACCTTACGAGGCTTTGTACGGTTGTAAA
*
74516006 TGTCGTACACCGTTGCTTTGGACTGAGCTTAGTAAAAGTAAAATCTATGGGGTTGATTTGATTAA
65 TGTCGTACACCGTTGCTTTGGACTGAGCTTAGTAAAAGTAAAATCTATAGGGTTGATTTGATTAA
74516071 AGATGCTGAGCAGAAAGTAAAAGTGATCCGTGAAAGTCTGAAAGCAGCTTCAGATCGTCAAAAGT
130 AGATGCTGAGCAGAAAGTAAAAGTGATCCGTGAAAGTCTGAAAGCAGCTTCAGATCGTCAAAAGT
74516136 CGTATGCGGATTTAAAACGAAAAGACATTGAATACCAGGTTAGAGACAAAGTGTTT
195 CGTATGCGGATTTAAAACGAAAAGACATTGAATACCAGGTTAGAGACAAAGTGTTT
74516192 CTTAAATAATAGTTTTCAATCAAGCATTAAGATGGCACCTTACGAGGCTTTGTACGGTTGTAAAT
1 CTTAAATAATAGTTTTCAATCAAGCATTAAGATGGCACCTTACGAGGCTTTGTACGGTTGTAAAT
*
74516257 GTCGTACACCGTTGCTTTGGACTGAGCTTAGTGAAAGTAAAATCTATAGGGTTGATTTGATTAAA
66 GTCGTACACCGTTGCTTTGGACTGAGCTTAGTAAAAGTAAAATCTATAGGGTTGATTTGATTAAA
*
74516322 GATGCTGAGCAGAAAGTAAAAGTGATCCGTGAAAGTCTGAAAGCAGCTTCAGATCGTCAGAAGTC
131 GATGCTGAGCAGAAAGTAAAAGTGATCCGTGAAAGTCTGAAAGCAGCTTCAGATCGTCAAAAGTC
74516387 GTATGCGGATTTAAAACGAAAAGACATTGAATACCAGGTTAGAGACAAAGTGTTT
196 GTATGCGGATTTAAAACGAAAAGACATTGAATACCAGGTTAGAGACAAAGTGTTT
74516442 CTTAAA
1 CTTAAA
74516448 GTTTCACGGT
Statistics
Matches: 253, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
250 249 0.98
251 4 0.02
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (250 bp):
CTTAAATAATAGTTTTCAATCAAGCATTAAGATGGCACCTTACGAGGCTTTGTACGGTTGTAAAT
GTCGTACACCGTTGCTTTGGACTGAGCTTAGTAAAAGTAAAATCTATAGGGTTGATTTGATTAAA
GATGCTGAGCAGAAAGTAAAAGTGATCCGTGAAAGTCTGAAAGCAGCTTCAGATCGTCAAAAGTC
GTATGCGGATTTAAAACGAAAAGACATTGAATACCAGGTTAGAGACAAAGTGTTT
Found at i:74519062 original size:47 final size:47
Alignment explanation
Indices: 74518998--74519087 Score: 162
Period size: 47 Copynumber: 1.9 Consensus size: 47
74518988 ATATGCTAGA
*
74518998 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATAATAT
1 ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATAATAT
*
74519045 ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTACTATA
1 ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATA
74519088 TCCGGGCTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (47 bp):
ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATAATAT
Found at i:74520839 original size:28 final size:28
Alignment explanation
Indices: 74520799--74520858 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
74520789 TTAATTATCA
74520799 AATCATGTAAGACATAAACAAAGACAAT
1 AATCATGTAAGACATAAACAAAGACAAT
74520827 AATCATGTAAGACATAAACAAAGACAAT
1 AATCATGTAAGACATAAACAAAGACAAT
74520855 AATC
1 AATC
74520859 TATTCTAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.57, C:0.15, G:0.10, T:0.18
Consensus pattern (28 bp):
AATCATGTAAGACATAAACAAAGACAAT
Found at i:74526666 original size:46 final size:46
Alignment explanation
Indices: 74526612--74526833 Score: 263
Period size: 46 Copynumber: 4.8 Consensus size: 46
74526602 TGTTTGGGCA
74526612 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
74526658 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
74526704 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
74526751 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
74526797 -CCTGAGCTCGTTGAGTTGAGTTCGGGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74526834 GCGGGTTACA
Statistics
Matches: 151, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 3 0.02
46 108 0.72
47 31 0.21
48 1 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74529809 original size:15 final size:15
Alignment explanation
Indices: 74529773--74529849 Score: 81
Period size: 14 Copynumber: 5.4 Consensus size: 15
74529763 ATATCTTGGG
*
74529773 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
74529788 -CTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
74529802 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
74529817 TTTCTCTA-TC-GGA
1 TTTCTTTATTCTGGA
*
74529830 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
74529844 TTTCTT
1 TTTCTT
74529850 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
13 9 0.17
14 24 0.46
15 19 0.37
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:74532269 original size:46 final size:45
Alignment explanation
Indices: 74532219--74532394 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
74532209 TGTTTGGGCA
74532219 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
74532265 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
74532312 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
74532358 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74532395 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:74532374 original size:93 final size:93
Alignment explanation
Indices: 74532215--74532386 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
74532205 AGGATGTTTG
* *
74532215 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74532280 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
74532308 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74532373 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
74532387 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:74535123 original size:43 final size:42
Alignment explanation
Indices: 74535021--74535132 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 42
74535011 TGAGATTACG
* * *
74535021 TGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTCCA
** *
74535063 TGTAAGATTAT-TGCTGGGCA-ATTGGTATCGATATGAGA-TACCA
1 TGTAAGACCATAT-CTGGG-ATA-TGGCATCGATATGAGACT-CCA
74535106 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
74535133 TGGTATGGTA
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
41 1 0.02
42 21 0.38
43 32 0.58
44 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTCCA
Found at i:74535243 original size:20 final size:20
Alignment explanation
Indices: 74535215--74535261 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
74535205 CGACAATGTT
*
74535215 TAAGTTGTGAAGGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
74535235 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
74535255 TAAGTTG
1 TAAGTTG
74535262 CAAGTTAGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.32, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:74537538 original size:46 final size:46
Alignment explanation
Indices: 74537488--74537660 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
74537478 TGGTTGAGCA
*
74537488 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
74537534 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
74537581 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
74537627 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74537661 GGGCGGGTTA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 62 0.58
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:74537644 original size:93 final size:93
Alignment explanation
Indices: 74537485--74537655 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
74537475 GGATGGTTGA
* *
74537485 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
74537550 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
74537578 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
74537643 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74537656 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:74537915 original size:19 final size:20
Alignment explanation
Indices: 74537880--74537917 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
74537870 ATAAGGTGGT
74537880 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
74537900 AAGAT-ATGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
74537918 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:74544743 original size:49 final size:50
Alignment explanation
Indices: 74544663--74544908 Score: 307
Period size: 49 Copynumber: 4.9 Consensus size: 50
74544653 ATCTATTGTA
*
74544663 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
74544713 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
74544763 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
74544813 AGGTTACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
74544863 -GGCCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
74544909 GCTTTGGCTA
Statistics
Matches: 166, Mismatches: 28, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 81 0.49
50 47 0.28
51 38 0.23
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:74544800 original size:28 final size:28
Alignment explanation
Indices: 74544768--74544851 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
74544758 AACTTCGATC
74544768 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
74544796 ACGTGTATCAG-A-T-GGT-TAGG-T--T
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
74544818 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
74544846 ACGTGT
1 ACGTGT
74544852 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 9 0.21
23 1 0.02
24 3 0.07
25 6 0.14
26 3 0.07
27 1 0.02
28 15 0.36
29 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:74556002 original size:40 final size:38
Alignment explanation
Indices: 74555896--74556012 Score: 110
Period size: 40 Copynumber: 2.9 Consensus size: 38
74555886 GTGCTAAGTG
*
74555896 ACTAAATCCGGGTCAATTCCCGAAGGCATT-TGCGCTAGTT
1 ACTAAATTCGGGT-AATTCCCGAAGGCATTGTGCG--AGTT
* * * *
74555936 ACCAAAATCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTT
1 ACTAAATTCGGG-TAATTCCCGAAGGCATT-GTGCGAGTT
*
74555976 ACTAAATTCGGGCTAATTCCCAAAGGCAATTGTGCGA
1 ACTAAATTCGGG-TAATTCCCGAAGGC-ATTGTGCGA
74556013 ATCACTATAA
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
40 54 0.87
41 4 0.06
42 4 0.06
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (38 bp):
ACTAAATTCGGGTAATTCCCGAAGGCATTGTGCGAGTT
Found at i:74563363 original size:38 final size:39
Alignment explanation
Indices: 74563262--74563452 Score: 199
Period size: 40 Copynumber: 4.8 Consensus size: 39
74563252 TTGAATGATG
* * * *
74563262 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTACTAAA
* *
74563302 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTACTAAA
*
74563342 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTACTAAA
* *
74563380 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTACTA-AA
** *
74563421 -CCGGGCTTTGTCCCGAAGGCATTCGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
74563453 CGTTATATCC
Statistics
Matches: 130, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
38 34 0.26
40 87 0.67
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:74563397 original size:78 final size:80
Alignment explanation
Indices: 74563262--74563427 Score: 207
Period size: 78 Copynumber: 2.1 Consensus size: 80
74563252 TTGAATGATG
* *
74563262 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTC
1 TCCGGGCTAAG-CCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
74563327 GTGCGAGTTAATA-AA
65 GTGCGAGTTAATATAA
* * **
74563342 TCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
74563404 CGTGCGAGTTACTATAA
64 CGTGCGAGTTAATATAA
74563421 -CCGGGCT
1 TCCGGGCT
74563428 TTGTCCCGAA
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 55 0.72
79 9 0.12
80 11 0.14
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCGAGTTAATATAA
Found at i:74568330 original size:40 final size:40
Alignment explanation
Indices: 74568234--74568424 Score: 229
Period size: 40 Copynumber: 4.8 Consensus size: 40
74568224 CGAATGGTGT
* * * * ** *
74568234 CCGGGATAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
74568275 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
74568315 CCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
74568355 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
74568395 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
74568425 ATCACTATAA
Statistics
Matches: 130, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 106 0.82
41 24 0.18
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:74568387 original size:80 final size:81
Alignment explanation
Indices: 74568234--74568466 Score: 247
Period size: 80 Copynumber: 2.9 Consensus size: 81
74568224 CGAATGGTGT
* ** * * *
74568234 CCGGGATAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGATAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
74568299 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * *
74568315 CCGGGTTAAGTCCCGAAGGCATTTGTGCT-AGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGATAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
* *
74568379 GTGCGAGTTACTAAAT
66 GTGCGAGTTACCAAAA
* * * * * * * * *
74568395 CCGGGCTAATTCCCGAAGGCAATTGTGCGAA-TCACTATAACCGGG-CAATGTCCCGAAGACAAT
1 CCGGGATAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTCAA-GTCCCGAAGGCATT
*
74568458 CGAGCGAGT
65 CGTGCGAGT
74568467 CGCTATATCC
Statistics
Matches: 128, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 98 0.77
81 28 0.22
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (81 bp):
CCGGGATAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
GTGCGAGTTACCAAAA
Found at i:74568439 original size:40 final size:40
Alignment explanation
Indices: 74568282--74568466 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
74568272 AATCCGGGTC
* *
74568282 AATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTT
1 AATTCCCGAAGGCAATTGTGCGAGTTACCAAAACCGGGCT
* * * *
74568322 AAGTCCCGAAGGCATTTGTGCTAGTTACCAAAACCGGGTT
1 AATTCCCGAAGGCAATTGTGCGAGTTACCAAAACCGGGCT
* * *
74568362 AAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAATCCGGGCT
1 AATTCCCGAAGGCAATT-GTGCGAGTTACCAAAACCGGGCT
* * * *
74568402 AATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGC-
1 AATTCCCGAAGGCAATTGTGCGAGTTACCAAAACCGGGCT
* * *
74568441 AATGTCCCGAAGACAATCGAGCGAGT
1 AAT-TCCCGAAGGCAATTGTGCGAGT
74568467 CGCTATATCC
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 5 0.04
40 118 0.94
41 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (40 bp):
AATTCCCGAAGGCAATTGTGCGAGTTACCAAAACCGGGCT
Found at i:74568448 original size:120 final size:121
Alignment explanation
Indices: 74568234--74568452 Score: 291
Period size: 120 Copynumber: 1.8 Consensus size: 121
74568224 CGAATGGTGT
* * * *
74568234 CCGGGATAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGATAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
74568299 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCTAGTTACCAAAA
* * *
74568355 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGATAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
74568418 TGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAAG
74568453 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.04
120 56 0.67
121 25 0.30
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (121 bp):
CCGGGATAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCTAGTTACCAAAA
Found at i:74570485 original size:17 final size:17
Alignment explanation
Indices: 74570463--74570497 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
74570453 AACTGATAAC
74570463 AACCCCATCTCAAATCT
1 AACCCCATCTCAAATCT
74570480 AACCCCATCTCAAATCT
1 AACCCCATCTCAAATCT
74570497 A
1 A
74570498 TCTTTGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.40, G:0.00, T:0.23
Consensus pattern (17 bp):
AACCCCATCTCAAATCT
Found at i:74575832 original size:38 final size:38
Alignment explanation
Indices: 74575789--74575873 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 38
74575779 AGCTTAAAGA
*
74575789 CTCGCAGGCTTTATGCTAGAATTATATCCGGGTTAAAT
1 CTCGCAGGCTTCATGCTAGAATTATATCCGGGTTAAAT
* * * * *
74575827 CTCGCAGGCTTCGTGTTGGTATTATATCTGGGTTAAAT
1 CTCGCAGGCTTCATGCTAGAATTATATCCGGGTTAAAT
*
74575865 CCCGCAGGC
1 CTCGCAGGC
74575874 CTAGTGCTGG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (38 bp):
CTCGCAGGCTTCATGCTAGAATTATATCCGGGTTAAAT
Found at i:74575885 original size:38 final size:38
Alignment explanation
Indices: 74575809--74575913 Score: 129
Period size: 38 Copynumber: 2.7 Consensus size: 38
74575799 TTATGCTAGA
* * * * *
74575809 ATTATATCCGGGTTAAATCTCGCAGGCTTCGTGTTGGT
1 ATTATATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGT
74575847 ATTATATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGT
1 ATTATATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGT
* *
74575885 ATTATATCTGAGTTTAAAGTCCCGTAGGC
1 ATTATATCTG-GGTTAAA-TCCCGCAGGC
74575914 TTCGTGATGG
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 43 0.74
39 6 0.10
40 9 0.16
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (38 bp):
ATTATATCTGGGTTAAATCCCGCAGGCCTAGTGCTGGT
Found at i:74579730 original size:46 final size:45
Alignment explanation
Indices: 74579663--74579837 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
74579653 TGTAACCCGC
*
74579663 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* * *
74579709 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGATGCCTAGT-T
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-G-GGCTTCGTAT
* *** * * * *
74579755 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
74579802 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
74579838 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.65
47 33 0.32
48 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:74579804 original size:93 final size:93
Alignment explanation
Indices: 74579671--74579842 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
74579661 GCCCATAAGT
* * * *
74579671 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGTATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
74579736 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* *
74579764 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
74579829 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
74579843 CAAATATCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:74582593 original size:43 final size:43
Alignment explanation
Indices: 74582546--74582659 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
74582536 ACACATATCG
* * * * *
74582546 ATGCCACTGTCCCAAACAAGGTCTTACACGAAAT-TGATTAACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAT-ACA
* *
74582589 ATGCCAATGTCCCAGACATGGTCTCACACGTAATCTCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
*
74582632 ATGCCAATGTCCTAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
74582660 TGTGATCACT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 58 0.95
44 3 0.05
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
Found at i:74595047 original size:28 final size:28
Alignment explanation
Indices: 74594988--74595056 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
74594978 ATGAGATTGG
*
74594988 CACTAAGTGTGCGAGTTTAATTGTATAG
1 CACTAAGTGTGCGAGTTTAATTGTATAA
*
74595016 CACTAAGTGTGCGAGTTTGACTAT-TA-AA
1 CACTAAGTGTGCGAGTTT-AAT-TGTATAA
74595044 CACTAAGTGTGCG
1 CACTAAGTGTGCG
74595057 GCTTACTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 32 0.86
29 4 0.11
30 1 0.03
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTATAA
Found at i:74598641 original size:18 final size:18
Alignment explanation
Indices: 74598596--74598633 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
74598586 CGTACATGAG
* *
74598596 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAAAAAAGAA
74598614 AGAAAAAAAAAAAAAGAA
1 AGAAAAAAAAAAAAAGAA
74598632 AG
1 AG
74598634 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAAAAAAGAA
Found at i:74599930 original size:40 final size:40
Alignment explanation
Indices: 74599871--74599977 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
74599861 CAATTGAATG
* * * *
74599871 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
74599911 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
74599951 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
74599978 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:74599997 original size:40 final size:39
Alignment explanation
Indices: 74599912--74600038 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
74599902 CTGGAAATTA
* * *
74599912 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
74599950 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
74599992 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
74600032 TATCCGG
1 TATCCGG
74600039 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:74607068 original size:66 final size:68
Alignment explanation
Indices: 74606992--74607178 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
74606982 TAGTACCACT
*
74606992 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
74607054 CACG
65 CACG
74607058 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
74607123 ATCACG
63 ATCACG
74607129 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
74607179 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:74607103 original size:71 final size:71
Alignment explanation
Indices: 74607015--74607178 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74607005 CGATTTGTCT
74607015 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74607080 CTTTCA
66 CTTTCA
74607086 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
74607151 CTTTCA
66 CTTTCA
74607157 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
74607179 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:74607216 original size:71 final size:70
Alignment explanation
Indices: 74607015--74607212 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
74607005 CGATTTGTCT
* * *
74607015 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
74607080 CTTTCA
65 CTTTCA
* * *
74607086 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
74607151 CTTTCA
65 CTTTCA
* *
74607157 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
74607213 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:74610494 original size:31 final size:31
Alignment explanation
Indices: 74610452--74610565 Score: 147
Period size: 31 Copynumber: 3.5 Consensus size: 31
74610442 CCTTTTCGTA
74610452 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
74610489 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
74610521 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
74610552 TTTCATGTTTCATA
1 TTTCATATTTCATA
74610566 TTTCATAATA
Statistics
Matches: 74, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
31 43 0.58
32 1 0.01
33 1 0.01
37 1 0.01
38 28 0.38
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:74610494 original size:38 final size:38
Alignment explanation
Indices: 74610429--74610591 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
74610419 TCAATCATGC
* * *
74610429 ACTGGGCCGTAGCCCTTTTCGTATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATGTTTCATATTTCATAAT
74610468 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
*
74610506 ACTGGGCCGAAG-C----C-T-TTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
74610537 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
74610575 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
74610592 ACTGTAAACG
Statistics
Matches: 112, Mismatches: 5, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
31 27 0.24
32 2 0.02
33 1 0.01
36 1 0.01
37 2 0.02
38 68 0.61
39 11 0.10
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
Found at i:74610563 original size:69 final size:69
Alignment explanation
Indices: 74610452--74610591 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
74610442 CCTTTTCGTA
74610452 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
74610517 GCCT
66 GCCT
*
74610521 TTTCATATTTCATATTACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
74610586 GCCT
66 GCCT
74610590 TT
1 TT
74610592 ACTGTAAACG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (69 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
GCCT
Found at i:74610829 original size:24 final size:24
Alignment explanation
Indices: 74610783--74610854 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
74610773 GCTTTATCAT
*
74610783 ATAACTGGAGGCC-TAGCCTCTTTTA
1 ATAACTGG-GGCCAAAGCC-CTTTTA
*
74610808 ATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGGGGCCAAAGCCCTTTTA
74610832 ATAACTGGGG-CATAAGCCCTTTT
1 ATAACTGGGGCCA-AAGCCCTTTT
74610855 TCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 2 0.05
24 28 0.67
25 12 0.29
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCCAAAGCCCTTTTA
Found at i:74610930 original size:20 final size:20
Alignment explanation
Indices: 74610905--74610964 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
74610895 TATGATTACC
74610905 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
74610925 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
74610945 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
74610965 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:74611039 original size:25 final size:25
Alignment explanation
Indices: 74611007--74611054 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74610997 ATACATAAAC
* * *
74611007 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74611032 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74611055 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74614131 original size:40 final size:39
Alignment explanation
Indices: 74614065--74614215 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
74614055 AAATTGAATG
* * *
74614065 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
74614104 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
74614144 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
74614184 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
74614216 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:74614229 original size:40 final size:39
Alignment explanation
Indices: 74614102--74614231 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
74614092 ATGCTGGAAA
* *
74614102 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
74614142 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
74614182 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
74614222 TTATATCCGG
1 TTATATCCGG
74614232 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:74622640 original size:43 final size:43
Alignment explanation
Indices: 74622574--74622789 Score: 246
Period size: 43 Copynumber: 5.1 Consensus size: 43
74622564 ATATGGTACA
* * *
74622574 ATGCCAATGTCCCTGAC-GTGGTCTTACATGTAATCTCATATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTACATGTAATCACATATCG
* *
74622617 ATGCC-ACTGTCCGAGACAGGGTCTTAC-TCGTAA-CACATATAG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTAATCACATATCG
*
74622659 ATGCCAACGTCCCAGACAAGGTCTTACATGT-ATCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAATCACATATCG
*
74622701 ATGCCAACGTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTACATGTAATCACATATCG
** ** *
74622744 ATGCCAACGTTTCAGACTTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAATCACATATCG
74622787 ATG
1 ATG
74622790 TCTATATACA
Statistics
Matches: 151, Mismatches: 13, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 69 0.46
43 80 0.53
44 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAATCACATATCG
Found at i:74634606 original size:28 final size:28
Alignment explanation
Indices: 74634574--74634627 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
74634564 AAAGATACCC
74634574 AGATTAAAATACTTATAACTTAGAATTT
1 AGATTAAAATACTTATAACTTAGAATTT
*
74634602 AGATTAAAATACTTGTAACTTAGAAT
1 AGATTAAAATACTTATAACTTAGAAT
74634628 GTAATAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.37
Consensus pattern (28 bp):
AGATTAAAATACTTATAACTTAGAATTT
Found at i:74637732 original size:25 final size:25
Alignment explanation
Indices: 74637698--74637747 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
74637688 TAACAACAGC
*
74637698 AGAACTACAATCATCACACTCAGAT
1 AGAACTACAATCAGCACACTCAGAT
*
74637723 AGAACTACAATTAGCACACTCAGAT
1 AGAACTACAATCAGCACACTCAGAT
74637748 GCATCCACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.20
Consensus pattern (25 bp):
AGAACTACAATCAGCACACTCAGAT
Found at i:74643537 original size:49 final size:49
Alignment explanation
Indices: 74643456--74643664 Score: 350
Period size: 49 Copynumber: 4.3 Consensus size: 49
74643446 CCCTTCGGGA
* * * * * *
74643456 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74643503 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74643552 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74643601 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74643650 CTTATCACATATATA
1 CTTATCACATATATA
74643665 TATCTCATAC
Statistics
Matches: 154, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 10 0.06
48 1 0.01
49 143 0.93
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74646440 original size:40 final size:39
Alignment explanation
Indices: 74646391--74646535 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 39
74646381 GACTCGCTCG
* *
74646391 ATTGTCTTCGGGACATAGCCCGG-TTATAGTGATTCGCACA
1 ATTGCCTTCGGGA-ATAGCCCGGATT-TAGTAATTCGCACA
*
74646431 ATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACA
1 ATTGCCTTCGGGAA-TAGCCCGGATTTAGTAATTCGCACA
* * * *
74646471 AATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACA
1 ATTGCCTTCGGGAATAG-CCCGGATTTAGT-AATTCGCACA
* *
74646512 A-AGCCTTCGGGACTTAGCCCGGAT
1 ATTGCCTTCGGGA-ATAGCCCGGAT
74646536 ACCATTCGAA
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 3 0.03
40 74 0.83
41 12 0.13
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (39 bp):
ATTGCCTTCGGGAATAGCCCGGATTTAGTAATTCGCACA
Found at i:74647326 original size:40 final size:40
Alignment explanation
Indices: 74647266--74647909 Score: 1137
Period size: 40 Copynumber: 16.1 Consensus size: 40
74647256 CGAATACACG
* * * * * *
74647266 TCACTAGCATGATTGATCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
74647306 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
*
74647346 TCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
74647386 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
* *
74647426 TCACTAGAACGAATACTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
74647466 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
* *
74647506 TCACGAGAACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
74647546 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
74647586 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
*
74647626 TCACTAGAACGAATGCTCTTC-GAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
74647665 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
74647705 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
74647745 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
*
74647785 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACG
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
*
74647825 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACG
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
* *
74647865 TCACTAGCACGAATGCTCTTCGGAACTTAGTCTGGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
74647905 TCACT
1 TCACT
74647910 CTCAATTCTC
Statistics
Matches: 581, Mismatches: 22, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
39 38 0.07
40 543 0.93
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
Found at i:74650075 original size:49 final size:49
Alignment explanation
Indices: 74649994--74650202 Score: 350
Period size: 49 Copynumber: 4.3 Consensus size: 49
74649984 CCCTTCGGGA
* * * * * *
74649994 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74650041 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74650090 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74650139 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74650188 CTTATCACATATATA
1 CTTATCACATATATA
74650203 TATCTCATAC
Statistics
Matches: 154, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 10 0.06
48 1 0.01
49 143 0.93
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74652949 original size:40 final size:39
Alignment explanation
Indices: 74652905--74653045 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 39
74652895 GCTCGATTGT
* *
74652905 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGA-ATAGCCCGGATT-TAGTAATTCGCACAAATGC
* *
74652945 CTTCGAGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGAA-TAGCCCGGATTTAGTAATTCGCACAAATGC
* * * *
74652985 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATAG-CCCGGATTTAGT-AATTCGCACAAATGC
*
74653026 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGA-ATAGCCCGGAT
74653046 ACCATTCGAA
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
39 3 0.04
40 51 0.61
41 28 0.33
42 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CTTCGGGAATAGCCCGGATTTAGTAATTCGCACAAATGC
Found at i:74653032 original size:41 final size:40
Alignment explanation
Indices: 74652943--74653045 Score: 136
Period size: 41 Copynumber: 2.5 Consensus size: 40
74652933 TCGCACAATT
* * *
74652943 GCCTTCGAGAATTAGCCCGGATTTAGTAACTCGCACAAAT
1 GCCTTCGGGAATTAGCCCGGATTTAGTAACTAGCACAAAA
*
74652983 GCCTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAA
1 GCCTTCGGGAATTAG-CCCGGATTTAGTAAC-TAGCACAAAA
*
74653024 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGAATTAGCCCGGAT
74653046 ACCATTCGAA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
39 1 0.02
40 26 0.47
41 27 0.49
42 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGAATTAGCCCGGATTTAGTAACTAGCACAAAA
Found at i:74653838 original size:40 final size:40
Alignment explanation
Indices: 74653789--74654339 Score: 971
Period size: 40 Copynumber: 13.8 Consensus size: 40
74653779 CCAGCATGAT
* * *
74653789 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
74653829 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
74653869 TGCT-TCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCT-TCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
74653909 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGAACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
74653949 TGCTCTTC-GAACTTAGTCCGGATACATCACTAGCAAGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
74653988 TGCTCTTCGGAACATAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
74654028 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGAACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
74654068 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
74654108 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
74654148 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
74654188 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
74654228 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
74654268 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
74654308 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
74654340 CTCAATTCTC
Statistics
Matches: 494, Mismatches: 14, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
39 38 0.08
40 455 0.92
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:74656508 original size:49 final size:49
Alignment explanation
Indices: 74656427--74656586 Score: 252
Period size: 49 Copynumber: 3.3 Consensus size: 49
74656417 CCCTTCGGGA
* * * * * *
74656427 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74656474 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74656523 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
74656572 CTTATCACATATATA
1 CTTATCACATATATA
74656587 TATCTCATAC
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 10 0.10
48 1 0.01
49 94 0.90
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74659979 original size:49 final size:49
Alignment explanation
Indices: 74659910--74660403 Score: 884
Period size: 49 Copynumber: 10.1 Consensus size: 49
74659900 CTACATAATA
*
74659910 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74659959 ATATATGTGATAAGGCCTAATGGCCGA-GTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74660007 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74660056 AGATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74660104 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
74660153 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
74660202 ATATATGTGATAAGGCCTAATGGCTGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74660251 AGATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
74660300 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
74660349 ATATATGTGATAAGGCCTAATGGCTGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
74660398 ATATAT
1 ATATAT
74660404 ATGTGGTAAA
Statistics
Matches: 430, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 94 0.22
49 336 0.78
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:74660527 original size:37 final size:36
Alignment explanation
Indices: 74660472--74660558 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
74660462 AACTTAGAAA
74660472 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
74660510 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
74660547 TATGTCCGGGTA
1 TATGTCCGGGTA
74660559 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:74662500 original size:40 final size:39
Alignment explanation
Indices: 74662431--74662820 Score: 523
Period size: 40 Copynumber: 9.8 Consensus size: 39
74662421 GAGAATTGAG
* * *
74662431 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGCGCT
1 AATGATATATCCGG-CTAAATTCCGAAGAGCATTCGTGCT
* *
74662471 AATGGTATATCCAGGCTAAATTCCAAAGAGCATTCGTGCT
1 AATGATATATCC-GGCTAAATTCCGAAGAGCATTCGTGCT
74662511 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATATATCC-GGCTAAATTCCGAAGAGCATTCGTGCT
* *
74662551 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATATATCCGG-CTAAATTCCGAAGAGCATTCGTGCT
* *
74662591 AATGATGTATCCGGACTAAGTT-CGAAGAGCATTCGTGCT
1 AATGATATATCCGG-CTAAATTCCGAAGAGCATTCGTGCT
74662630 AATGATATATCCGGGCTAAATTCCGAA-AGCATTCGTGCT
1 AATGATATATCC-GGCTAAATTCCGAAGAGCATTCGTGCT
74662669 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATATATCC-GGCTAAATTCCGAAGAGCATTCGTGCT
74662709 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATATATCC-GGCTAAATTCCGAAGAGCATTCGTGCT
* * *
74662749 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATATATCCGG-CTAAATTCCGAAGAGCATTCGTGCT
* * ** *
74662789 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AATGATATATCC-GGCTAAATTCCGAAGAGCA
74662821 ATCATGCTGG
Statistics
Matches: 326, Mismatches: 17, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
39 77 0.24
40 245 0.75
41 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (39 bp):
AATGATATATCCGGCTAAATTCCGAAGAGCATTCGTGCT
Found at i:74662580 original size:80 final size:80
Alignment explanation
Indices: 74662431--74662820 Score: 595
Period size: 80 Copynumber: 4.9 Consensus size: 80
74662421 GAGAATTGAG
* * * *
74662431 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGCGCTAATGGTATATCCAGGCTAAATTCCA
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCG
74662496 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * * * *
74662511 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTTCCG
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCG
74662576 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
74662591 AATGATGTATCCGGACTAAGTT-CGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCG
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCG
74662655 AA-AGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * *
74662669 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCG
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCG
74662734 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * ** *
74662749 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCG
1 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCG
74662814 AAGAGCA
66 AAGAGCA
74662821 ATCATGCTGG
Statistics
Matches: 280, Mismatches: 28, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
78 31 0.11
79 85 0.30
80 164 0.59
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (80 bp):
AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCG
AAGAGCATTCGTGCT
Found at i:74662797 original size:198 final size:200
Alignment explanation
Indices: 74662431--74662820 Score: 658
Period size: 198 Copynumber: 2.0 Consensus size: 200
74662421 GAGAATTGAG
* * *
74662431 AATGATGTATCCGGACTAAGTTCCGAAGAGCATTCGCGCTAATGGTATATCCAGGCTAAATTCCA
1 AATGATATATCCGGACTAAATTCCGAAGAGCATTCGCGCTAATGATATATCCAGGCTAAATTCCA
74662496 AAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATGTAT
66 AAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATGTAT
*
74662561 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGT-TCGAAGAGCATTC
131 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTCCCGAAGAGCATTC
74662625 GTGCT
196 GTGCT
* * * *
74662630 AATGATATATCCGGGCTAAATTCCGAA-AGCATTCGTGCTAATGATATATCCGGGCTAAATTCCG
1 AATGATATATCCGGACTAAATTCCGAAGAGCATTCGCGCTAATGATATATCCAGGCTAAATTCCA
*
74662694 AAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
66 AAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATGTAT
* * *
74662759 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
131 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTCCCGAAGAGCA
74662821 ATCATGCTGG
Statistics
Matches: 178, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
198 145 0.81
199 33 0.19
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (200 bp):
AATGATATATCCGGACTAAATTCCGAAGAGCATTCGCGCTAATGATATATCCAGGCTAAATTCCA
AAGAGCATTCGTGCTAATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATGTAT
CCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATGTATCCGGACTAAGTCCCGAAGAGCATTC
GTGCT
Found at i:74666388 original size:49 final size:49
Alignment explanation
Indices: 74666319--74666714 Score: 697
Period size: 49 Copynumber: 8.1 Consensus size: 49
74666309 CTACATAATA
*
74666319 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74666368 ATATATGTGATAAGGCCTAATGGCCGA-GTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74666416 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74666465 AGATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74666513 AGATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74666562 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
74666611 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
74666660 ATATATGTGATAAGGCCTAATGGCTGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
74666709 ATATAT
1 ATATAT
74666715 ATGTGGTAAA
Statistics
Matches: 338, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
48 95 0.28
49 243 0.72
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:74666838 original size:37 final size:36
Alignment explanation
Indices: 74666783--74666869 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
74666773 AACTTAGAAA
74666783 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
74666821 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
*
74666858 TATGTTCGGGTA
1 TATGTCCGGGTA
74666870 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:74671959 original size:17 final size:17
Alignment explanation
Indices: 74671937--74671969 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74671927 ATAAGTACAC
*
74671937 ATTGTCATTGCATTTTT
1 ATTGTCATTACATTTTT
74671954 ATTGTCATTACATTTT
1 ATTGTCATTACATTTT
74671970 CATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:74675223 original size:40 final size:40
Alignment explanation
Indices: 74675165--74675396 Score: 174
Period size: 40 Copynumber: 5.8 Consensus size: 40
74675155 GGATATAGCG
* * * *
74675165 ACTCGCTCGATTGTCTTCGGGACATT-GCCCGATTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGATT-TAGTA
*
74675205 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCC-GATTTAGTA
* * *
74675245 ACTCGCACGAA-TGCCTTCGGGAC-TTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATTAGCCC-GATTTAGTA
* * * *
74675285 ACTCGCACAAATGCCTTCGGGAC-TTAACCCGGTTTTGGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCC-GATTTAGTA
* * *
74675325 ACTAGCACAAATGCCTTCGGGA-ATT-GACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATTAG-CCC-GATTTAGTA
* **
74675365 ACTTAGCACAAAAGCCTTCGGGAC-TTAGCCCG
1 AC-TCGCACAATTGCCTTCGGGACATTAGCCCG
74675397 GACACCATTC
Statistics
Matches: 167, Mismatches: 15, Indels: 20
0.83 0.07 0.10
Matches are distributed among these distances:
39 5 0.03
40 131 0.78
41 30 0.18
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
ACTCGCACAATTGCCTTCGGGACATTAGCCCGATTTAGTA
Found at i:74675291 original size:80 final size:81
Alignment explanation
Indices: 74675206--74675398 Score: 253
Period size: 80 Copynumber: 2.4 Consensus size: 81
74675196 ATTATAGTGA
* * * * *
74675206 TTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTA
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCACAAATGCCTTCGGGAATTA
* *
74675271 ACCCGGTTTTGGTAAC
66 ACCCGGATTTAGTAAC
* * * *
74675287 -TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTAGCACAAATGCCTTCGGGAATTG
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCACAAATGCCTTCGGGAATTA
*
74675351 ACCCGGATTTAGTCAC
66 ACCCGGATTTAGTAAC
* *
74675367 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGA
74675399 CACCATTCGA
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 68 0.72
81 27 0.28
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCACAAATGCCTTCGGGAATTA
ACCCGGATTTAGTAAC
Found at i:74688484 original size:11 final size:11
Alignment explanation
Indices: 74688468--74688492 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
74688458 TTTAAAAACT
74688468 AAAATTTAAAG
1 AAAATTTAAAG
74688479 AAAATTTAAAG
1 AAAATTTAAAG
74688490 AAA
1 AAA
74688493 GTAATATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (11 bp):
AAAATTTAAAG
Found at i:74715839 original size:40 final size:40
Alignment explanation
Indices: 74715784--74715918 Score: 225
Period size: 40 Copynumber: 3.4 Consensus size: 40
74715774 TATGTGCATA
*
74715784 GCATTCGTGCGGGTTATTACAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
74715824 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCTGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
74715864 GCATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
74715904 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
74715919 GTTACATCCG
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:74718464 original size:27 final size:27
Alignment explanation
Indices: 74718409--74718490 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
74718399 ACCCCCTTTT
* * *
74718409 TGGTAAAATGACTGTATTGCCCCTGTA
1 TGGTAAAATGACTGTTTTGCCACTATA
* *
74718436 TGGTAAAATGACTATTTTGCCATTATA
1 TGGTAAAATGACTGTTTTGCCACTATA
* * * *
74718463 TGCTAAGATGATTGTTTTGCCCCTATA
1 TGGTAAAATGACTGTTTTGCCACTATA
74718490 T
1 T
74718491 ATGTATGTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (27 bp):
TGGTAAAATGACTGTTTTGCCACTATA
Found at i:74721907 original size:46 final size:46
Alignment explanation
Indices: 74721857--74722032 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
74721847 TATTTGGGCA
74721857 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
74721903 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
74721950 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
74721996 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74722033 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:74722012 original size:93 final size:93
Alignment explanation
Indices: 74721853--74722024 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74721843 TGGATATTTG
* *
74721853 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74721918 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
74721946 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74722011 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
74722025 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74725016 original size:15 final size:15
Alignment explanation
Indices: 74724977--74725055 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
74724967 GTATCTTGGG
*
74724977 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
74724992 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
74725007 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
74725021 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
74725036 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
74725050 TTTCTT
1 TTTCTT
74725056 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:74725040 original size:29 final size:29
Alignment explanation
Indices: 74724968--74725054 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
74724958 CATAGTATCG
* * * *
74724968 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
74724998 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
74725027 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
74725055 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:74727482 original size:46 final size:46
Alignment explanation
Indices: 74727432--74727607 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
74727422 TATTTGGGCA
74727432 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
74727478 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
74727525 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
74727571 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74727608 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:74727587 original size:93 final size:93
Alignment explanation
Indices: 74727428--74727599 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74727418 TGGATATTTG
* *
74727428 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74727493 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
74727521 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74727586 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
74727600 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74729574 original size:29 final size:28
Alignment explanation
Indices: 74729514--74729574 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
74729504 GTGAGCATGA
* *
74729514 ATATAAGGTGATTTGAGCCTAACAGGCG
1 ATATAAGGTGATTTGAGCCTAACAAGCC
* *
74729542 ATATAAAGGTGATTTGGGCCTAATAAGCC
1 ATAT-AAGGTGATTTGAGCCTAACAAGCC
74729571 ATAT
1 ATAT
74729575 GAATATGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 4 0.14
29 24 0.86
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (28 bp):
ATATAAGGTGATTTGAGCCTAACAAGCC
Found at i:74736881 original size:29 final size:29
Alignment explanation
Indices: 74736838--74736962 Score: 153
Period size: 29 Copynumber: 4.3 Consensus size: 29
74736828 GAAAGCATGT
*
74736838 ATATGAATGTCATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
74736867 GTATGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** * *
74736896 ATACAAATGTAATTTAGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
74736925 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
74736953 ATATGTATGT
1 ATATGAATGT
74736963 ATGTAGACTT
Statistics
Matches: 79, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
28 22 0.28
29 57 0.72
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:74741218 original size:16 final size:16
Alignment explanation
Indices: 74741191--74741233 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
74741181 GTAGATCGGC
*
74741191 AAAAGCCGAAATGC-CG
1 AAAAGCCAAAAT-CTCG
*
74741207 AAAAGTCAAAATCTCG
1 AAAAGCCAAAATCTCG
74741223 AAAAGCCAAAA
1 AAAAGCCAAAA
74741234 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 1 0.04
16 22 0.96
ACGTcount: A:0.53, C:0.21, G:0.16, T:0.09
Consensus pattern (16 bp):
AAAAGCCAAAATCTCG
Found at i:74741514 original size:29 final size:29
Alignment explanation
Indices: 74741443--74741538 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
74741433 GAAAGCATGT
*
74741443 ATATGAATGTGATTTGGGCCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
74741472 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** * *
74741501 ATATGAATAAGA-TTAGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
74741529 ATATGTATGT
1 ATATGAATGT
74741539 CTGTAGACTT
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 21 0.36
29 38 0.64
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.32
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:74744131 original size:46 final size:45
Alignment explanation
Indices: 74744080--74744204 Score: 178
Period size: 46 Copynumber: 2.7 Consensus size: 45
74744070 GGTTGAGCAT
* * *
74744080 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATACGAACG
* *
74744125 TTCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACG
1 -CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATACGAACG
*
74744171 CCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CC-GAACTCGTTGAGTTGAGTCTGAGTTCACTTA
74744205 GGGGCGGGTT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
45 1 0.01
46 70 0.99
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATACGAACG
Found at i:74759389 original size:39 final size:39
Alignment explanation
Indices: 74759335--74759708 Score: 475
Period size: 39 Copynumber: 9.5 Consensus size: 39
74759325 TAATGGAGAA
*
74759335 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGTTGGTG
1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74759374 TTATATCCAGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
74759413 TTATATCCGGGCTAAGTCTCGAAGGCATTCATGCTGGTG
1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
74759452 TTATATCC-GAGCTAAGTCTCAAAGGCATTCGTGCTGGTG
1 TTATATCCAG-GCTAAGTCCCGAAGGCATTCGTGCTGGTG
** *
74759491 TTATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTGGTG
1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
74759530 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
74759569 TTATATCCAGGCTAAGCCCCGATGGCATTCGTGCTAGTG
1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
74759608 TTTTATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
74759647 TTATAT-CAGGGTTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCA-GGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
74759686 TTATATTCAGGCTTAAAGTCCCG
1 TTATATCCAGGC-T-AAGTCCCG
74759709 TATGCTTTGT
Statistics
Matches: 301, Mismatches: 28, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
38 2 0.01
39 275 0.91
40 24 0.08
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:74765172 original size:39 final size:39
Alignment explanation
Indices: 74765071--74765402 Score: 472
Period size: 39 Copynumber: 8.5 Consensus size: 39
74765061 TAATGGAGAA
74765071 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74765110 TTATATCC-GGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
74765148 TTATATCCGGGCTAAGTCTCGAAGGCATTCTTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74765187 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
74765226 TTATATCC-GGCTAAGTTCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
74765264 TTATATCTGGGCTAAGCCCCGAAGGCATTCGTGATGCTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
74765303 TTATATCCGGGCTAAGCCCCGATGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
74765342 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
* *
74765381 TTATATTCGGGTTAAAGTCCCG
1 TTATATCCGGGCT-AAGTCCCG
74765403 CATGCTTTGT
Statistics
Matches: 266, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
38 71 0.27
39 185 0.70
40 10 0.04
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:74765238 original size:77 final size:78
Alignment explanation
Indices: 74765071--74765402 Score: 472
Period size: 77 Copynumber: 4.3 Consensus size: 78
74765061 TAATGGAGAA
74765071 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCC-GGCTAAGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
*
74765135 ATTCATGCTGGTG
66 ATTCGTGCTGGTG
* * *
74765148 TTATATCCGGGCTAAGTCTCGAAGGCATTCTTGCTGGTGTTATATCCGGGCTAAGTCTCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
74765213 ATTCGTGCTGGTG
66 ATTCGTGCTGGTG
* * * *
74765226 TTATATCC-GGCTAAGTTCCAAAGGCATTCGTGCTGGTGTTATATCTGGGCTAAGCCCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
* *
74765290 ATTCGTGATGCTG
66 ATTCGTGCTGGTG
* * *
74765303 TTATATCCGGGCTAAGCCCCGATGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGTAGG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCCCGAAGG
* *
74765368 C-TTTGTGCTGGTA
65 CATTCGTGCTGGTG
* *
74765381 TTATATTCGGGTTAAAGTCCCG
1 TTATATCCGGGCT-AAGTCCCG
74765403 CATGCTTTGT
Statistics
Matches: 224, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
77 113 0.50
78 93 0.42
79 18 0.08
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (78 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
ATTCGTGCTGGTG
Found at i:74765276 original size:116 final size:116
Alignment explanation
Indices: 74765071--74765362 Score: 458
Period size: 116 Copynumber: 2.5 Consensus size: 116
74765061 TAATGGAGAA
*
74765071 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCCAAAGGCA
* * * * *
74765136 TTCATGCTGGTGTTATATCCGGGCTAAGTCTCGAAGGCATTCTTGCTGGTG
66 TTCATGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGATGCTG
* *
74765187 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCCGGCTAAGTTCCAAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCCAAAGGCA
* *
74765252 TTCGTGCTGGTGTTATATCTGGGCTAAGCCCCGAAGGCATTCGTGATGCTG
66 TTCATGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGATGCTG
* *
74765303 TTATATCCGGGCTAAGCCCCGATGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCC-GGCT-AAGTCCC
74765363 GTAGGCTTTG
Statistics
Matches: 160, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
116 150 0.94
117 4 0.03
118 6 0.04
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (116 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGCTAAGTCCCAAAGGCA
TTCATGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGATGCTG
Found at i:74771969 original size:29 final size:29
Alignment explanation
Indices: 74771936--74772018 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
74771926 GTGTCGAGAT
74771936 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
74771965 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
74771994 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
74772019 AAATACGGCA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:74778542 original size:29 final size:29
Alignment explanation
Indices: 74778509--74778591 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
74778499 GTGTCGAGAT
74778509 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
74778538 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
74778567 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
74778592 AAATACGGCA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:74786612 original size:29 final size:29
Alignment explanation
Indices: 74786579--74786661 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
74786569 GTGTCGAGAT
74786579 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
74786608 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
74786637 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
74786662 AAAATACGGC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:74790035 original size:42 final size:42
Alignment explanation
Indices: 74789876--74790014 Score: 224
Period size: 42 Copynumber: 3.3 Consensus size: 42
74789866 AGGATGTCAT
*
74789876 TTCGTGTAAGACCATGCCTGGGACATTGGCATCAATATGAGA
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCAATATGAGA
* *
74789918 TTCGTATAAGACCATGTCTGGGACATTGGCATCAATATCAGA
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCAATATGAGA
* *
74789960 TTCGTGAAAGACCATGTCTGGGACATTGGCATCGATATGAGA
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCAATATGAGA
*
74790002 TTCATGTAAGACC
1 TTCGTGTAAGACC
74790015 GTAGCTAGGC
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (42 bp):
TTCGTGTAAGACCATGTCTGGGACATTGGCATCAATATGAGA
Found at i:74790983 original size:33 final size:33
Alignment explanation
Indices: 74790946--74791010 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
74790936 TGGTAAGATT
74790946 GTTGTGGAAATGGTGATGGTTTAGTGATTATGA
1 GTTGTGGAAATGGTGATGGTTTAGTGATTATGA
74790979 GTTGTGGAAATGGTGATGGTTTAGTGATTATG
1 GTTGTGGAAATGGTGATGGTTTAGTGATTATG
74791011 GGTTTATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (33 bp):
GTTGTGGAAATGGTGATGGTTTAGTGATTATGA
Found at i:74796970 original size:42 final size:42
Alignment explanation
Indices: 74796919--74797114 Score: 247
Period size: 42 Copynumber: 4.7 Consensus size: 42
74796909 TACCGAGATG
74796919 TGAT-TTCATGTAAGACCATGTCTGGGACATTGGCATCGATA
1 TGATATTCATGTAAGACCATGTCTGGGACATTGGCATCGATA
*
74796960 TGATATTCATGTAAGACCATGTCTGGGACATTGGCATTGATA
1 TGATATTCATGTAAGACCATGTCTGGGACATTGGCATCGATA
* * *
74797002 TGAGATTCGTGTAAGATCATGTCTGGGACATTGGCATCGATA
1 TGATATTCATGTAAGACCATGTCTGGGACATTGGCATCGATA
* * *
74797044 TGAGATTCGTGTAAGACAATAG-CTGGG-CTATTGGCATCGATA
1 TGATATTCATGTAAGACCAT-GTCTGGGAC-ATTGGCATCGATA
* *
74797086 T-ACTATAACATGTAAGACCATATCTGGGA
1 TGA-TAT-TCATGTAAGACCATGTCTGGGA
74797115 TATGGAATAG
Statistics
Matches: 136, Mismatches: 12, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
41 6 0.04
42 113 0.83
43 17 0.12
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (42 bp):
TGATATTCATGTAAGACCATGTCTGGGACATTGGCATCGATA
Found at i:74803031 original size:38 final size:39
Alignment explanation
Indices: 74802986--74803087 Score: 143
Period size: 38 Copynumber: 2.6 Consensus size: 39
74802976 CGGACTAGGA
*
74802986 TCCGAAGGCATTCGTGCGAGTTA-AAAATCCGGGCTAAG
1 TCCGAAGGCATTCGTGCGAGTTACAAAACCCGGGCTAAG
* * * *
74803024 TCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAG
1 TCCGAAGGCATTCGTGCGAGTTACAAAACCCGGGCTAAG
74803063 TCCCGAAGGCATTCGTGCGAGTTAC
1 T-CCGAAGGCATTCGTGCGAGTTAC
74803088 TATAACTGGG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 21 0.38
39 13 0.24
40 21 0.38
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGAAGGCATTCGTGCGAGTTACAAAACCCGGGCTAAG
Found at i:74803086 original size:40 final size:39
Alignment explanation
Indices: 74802987--74803124 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 39
74802977 GGACTAGGAT
* *
74802987 CCGAAGGCATTCGTGCGAGTTA-AAAATCCGGGCTAAGT-
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* *
74803025 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* *
74803065 CCGAAGGCATTCGTGCGAGTTACTATAACTGGGCTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGG-TTAAGTC
* *
74803105 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
74803125 CGTTATATCC
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
38 20 0.24
39 13 0.15
40 48 0.56
41 4 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:74808634 original size:27 final size:27
Alignment explanation
Indices: 74808604--74808743 Score: 124
Period size: 27 Copynumber: 5.2 Consensus size: 27
74808594 ATTACCGTTT
* * *
74808604 TACCCTCAATTTACAGAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
** *
74808631 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
74808658 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AGTTTATAAAATTACCAAAA
**
74808685 TACCCTTTGTTTATAAAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
74808712 TACCCAT-GGTTTGA-AAAATTACTAAAA
1 TACCC-TCAGTTT-ATAAAATTACCAAAA
74808739 TACCC
1 TACCC
74808744 CTGTAGGGTA
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
27 90 0.98
28 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
TACCCTCAGTTTATAAAATTACCAAAA
Found at i:74808662 original size:54 final size:54
Alignment explanation
Indices: 74808606--74808743 Score: 152
Period size: 54 Copynumber: 2.5 Consensus size: 54
74808596 TACCGTTTTA
*
74808606 CCCTCAATTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
1 CCCT-AATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
* ** * * *
74808661 CCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATAC
1 CCCTAATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
* ** *
74808715 CCATGGTTTGA-AAAATTACTAAAATACCC
1 CCCTAATTT-ACAAAATTACCAAAATACCC
74808744 CTGTAGGGTA
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
54 68 0.94
55 4 0.06
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (54 bp):
CCCTAATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
Found at i:74808756 original size:27 final size:27
Alignment explanation
Indices: 74808726--74808787 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
74808716 CATGGTTTGA
74808726 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
74808753 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
74808780 AAAATTAC
1 AAAATTAC
74808788 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:74808756 original size:54 final size:54
Alignment explanation
Indices: 74808620--74808770 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
74808610 CAATTTACAG
* ** * * *
74808620 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATAGTTTGAAA
* ** *
74808674 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
* **
74808728 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
74808771 TTGTGGGGTA
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.04
54 80 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
Found at i:74808772 original size:81 final size:81
Alignment explanation
Indices: 74808620--74808772 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
74808610 CAATTTACAG
* **
74808620 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATTACTAAAA
74808685 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
74808701 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTAGT-GGGTAAAATTACTAA
74808764 AATACCCTT
64 AATACCCTT
74808773 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:74809440 original size:28 final size:28
Alignment explanation
Indices: 74809407--74809502 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
74809397 GCGTAGATCA
74809407 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
74809435 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
74809463 CGAAATTACCCCTAAATAGC-AAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
74809490 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
74809503 GGGTTTAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
25 3 0.05
26 8 0.12
27 8 0.12
28 45 0.70
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:74812776 original size:27 final size:27
Alignment explanation
Indices: 74812746--74812885 Score: 124
Period size: 27 Copynumber: 5.2 Consensus size: 27
74812736 ATTACCGTTT
* * *
74812746 TACCCTCAATTTACAGAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
** *
74812773 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
74812800 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AGTTTATAAAATTACCAAAA
**
74812827 TACCCTTTGTTTATAAAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
74812854 TACCCAT-GGTTTGA-AAAATTACTAAAA
1 TACCC-TCAGTTT-ATAAAATTACCAAAA
74812881 TACCC
1 TACCC
74812886 CTGTAGGGTA
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
27 90 0.98
28 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
TACCCTCAGTTTATAAAATTACCAAAA
Found at i:74812804 original size:54 final size:54
Alignment explanation
Indices: 74812748--74812885 Score: 152
Period size: 54 Copynumber: 2.5 Consensus size: 54
74812738 TACCGTTTTA
*
74812748 CCCTCAATTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
1 CCCT-AATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
* ** * * *
74812803 CCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATAC
1 CCCTAATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
* ** *
74812857 CCATGGTTTGA-AAAATTACTAAAATACCC
1 CCCTAATTT-ACAAAATTACCAAAATACCC
74812886 CTGTAGGGTA
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
54 68 0.94
55 4 0.06
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (54 bp):
CCCTAATTTACAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATAC
Found at i:74812898 original size:27 final size:27
Alignment explanation
Indices: 74812868--74812929 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
74812858 CATGGTTTGA
74812868 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
74812895 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
74812922 AAAATTAC
1 AAAATTAC
74812930 CATTTTGTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:74812898 original size:54 final size:54
Alignment explanation
Indices: 74812762--74812912 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
74812752 CAATTTACAG
* ** * * *
74812762 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATAGTTTGAAA
* ** *
74812816 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
* **
74812870 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
74812913 TTGTGGGGTA
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.04
54 80 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
Found at i:74812914 original size:81 final size:81
Alignment explanation
Indices: 74812762--74812914 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
74812752 CAATTTACAG
* **
74812762 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATTACTAAAA
74812827 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
74812843 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-GTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTAGT-GGGTAAAATTACTAA
74812906 AATACCCTT
64 AATACCCTT
74812915 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:74813583 original size:28 final size:28
Alignment explanation
Indices: 74813550--74813634 Score: 152
Period size: 28 Copynumber: 3.0 Consensus size: 28
74813540 GCGTAGATCA
74813550 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
74813578 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
74813606 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
74813634 C
1 C
74813635 AATATACCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:74817296 original size:40 final size:40
Alignment explanation
Indices: 74817237--74817405 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
74817227 CGGGACTTTA
* * *
74817237 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
74817277 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
74817317 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
74817357 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
74817397 CCCGGATAT
1 CCCGGATAT
74817406 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:74825321 original size:40 final size:40
Alignment explanation
Indices: 74825262--74825430 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
74825252 CGGGACTTTA
* * *
74825262 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
74825302 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
74825342 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
74825382 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
74825422 CCCGGATAT
1 CCCGGATAT
74825431 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:74832731 original size:29 final size:29
Alignment explanation
Indices: 74832699--74832771 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
74832689 CTTCGAGCTC
* *
74832699 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
** *
74832728 GCACACTTAGTGCCATATATTTCCAGCCT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74832757 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
74832772 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:74833993 original size:25 final size:26
Alignment explanation
Indices: 74833945--74834002 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
74833935 TTTTTTTCCT
74833945 TTTC-TTTGTTTTTCTTCATATTCTC
1 TTTCTTTTGTTTTTCTTCATATTCTC
* * *
74833970 TTTCTTTTTTTTTTTTTCAT-TTCTT
1 TTTCTTTTGTTTTTCTTCATATTCTC
74833995 TATTCTTT
1 T-TTCTTT
74834003 CTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 9 0.32
26 19 0.68
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.76
Consensus pattern (26 bp):
TTTCTTTTGTTTTTCTTCATATTCTC
Found at i:74836519 original size:15 final size:15
Alignment explanation
Indices: 74836499--74836528 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
74836489 AGAAAGTAAT
74836499 CGAATAGCCATTGTA
1 CGAATAGCCATTGTA
74836514 CGAATAGCCATTGTA
1 CGAATAGCCATTGTA
74836529 ATCGTTCGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (15 bp):
CGAATAGCCATTGTA
Found at i:74837511 original size:38 final size:38
Alignment explanation
Indices: 74837455--74837534 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
74837445 GATGTGTATT
* * *
74837455 CGGGTTAAATCCAGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCAGCAGGCCTAGTGCTGGTATTATATC
* *
74837493 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCAGCAGGCCTAGTGCTGGTATTATATC
74837531 CGGG
1 CGGG
74837535 CCTTCGTGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCAGCAGGCCTAGTGCTGGTATTATATC
Found at i:74837581 original size:43 final size:43
Alignment explanation
Indices: 74837506--74837694 Score: 283
Period size: 43 Copynumber: 4.4 Consensus size: 43
74837496 GATAAATCCC
* * *
74837506 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
74837547 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
74837590 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
74837633 GCAGGCTTCGTGCTGGTGATGTGTATTCAGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
74837676 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
74837695 AATGATATGT
Statistics
Matches: 134, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 15 0.11
42 2 0.01
43 117 0.87
ACGTcount: A:0.13, C:0.23, G:0.34, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:74839470 original size:93 final size:93
Alignment explanation
Indices: 74839358--74839530 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
74839348 CGCCCATAAG
* *
74839358 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74839423 ACGAGTTCGGATGCTTAGTTACATCTCA
66 ACGAGTTCGGATGCTTAGTTACATCTCA
*
74839451 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74839516 ACGAGTTCGGATGCT
66 ACGAGTTCGGATGCT
74839531 CAACCATCCT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCTTAGTTACATCTCA
Found at i:74839526 original size:46 final size:46
Alignment explanation
Indices: 74839351--74839526 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74839341 TGTAACCCGC
* * *
74839351 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74839397 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA--C--A-TTCGCAT
*
74839447 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74839490 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
74839527 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74844418 original size:40 final size:40
Alignment explanation
Indices: 74844310--74844559 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
74844300 CGGGATTTAA
* * * * *
74844310 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74844350 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74844390 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74844430 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74844470 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74844510 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74844550 CCGGATATAT
1 CCGGATATAT
74844560 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74852518 original size:40 final size:40
Alignment explanation
Indices: 74852410--74852659 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
74852400 CGGGATTTAA
* * * * *
74852410 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74852450 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74852490 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74852530 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74852570 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74852610 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74852650 CCGGATATAT
1 CCGGATATAT
74852660 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74854402 original size:6 final size:6
Alignment explanation
Indices: 74854393--74854440 Score: 87
Period size: 6 Copynumber: 8.0 Consensus size: 6
74854383 AAATCAATAC
*
74854393 ATGTAT ATGTAT ATGAAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
74854441 GTGCATGCAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (6 bp):
ATGTAT
Found at i:74858309 original size:3 final size:3
Alignment explanation
Indices: 74858301--74858348 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
74858291 TTTTTGCCTT
* * *
74858301 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG TGT TGT TGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
74858349 AGTTGCTGCG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.00, C:0.27, G:0.35, T:0.38
Consensus pattern (3 bp):
TGC
Found at i:74858348 original size:27 final size:27
Alignment explanation
Indices: 74858310--74858368 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
74858300 TTGCTGCTGC
*
74858310 TGCTGCTGCTGCTGCTGCTG-GTGTTGT
1 TGCTGCTGCTGCAGCTGCTGCGT-TTGT
*
74858337 TGCTGCTGCTGCAGTTGCTGCGTTTGT
1 TGCTGCTGCTGCAGCTGCTGCGTTTGT
74858364 TGCTG
1 TGCTG
74858369 AGGAGATGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.02, C:0.22, G:0.36, T:0.41
Consensus pattern (27 bp):
TGCTGCTGCTGCAGCTGCTGCGTTTGT
Found at i:74858353 original size:15 final size:15
Alignment explanation
Indices: 74858301--74858357 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
74858291 TTTTTGCCTT
*
74858301 TGCTGCTGCTGCTGC
1 TGCTGTTGCTGCTGC
* *
74858316 TGCTGCTGCTGCTGG
1 TGCTGTTGCTGCTGC
*
74858331 TGTTGTTGCTGCTGC
1 TGCTGTTGCTGCTGC
*
74858346 TGCAGTTGCTGC
1 TGCTGTTGCTGC
74858358 GTTTGTTGCT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.02, C:0.26, G:0.35, T:0.37
Consensus pattern (15 bp):
TGCTGTTGCTGCTGC
Found at i:74859040 original size:19 final size:19
Alignment explanation
Indices: 74858994--74859041 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
74858984 GTATATATTT
*
74858994 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGCTAGA
*
74859012 TAAATCTTATTTAGCTAGA
1 TAAATTTTATTTAGCTAGA
*
74859031 TAAGTTTTATT
1 TAAATTTTATT
74859042 AATATTCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGCTAGA
Found at i:74860176 original size:22 final size:22
Alignment explanation
Indices: 74860151--74860196 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
74860141 ACATAACTAA
74860151 TAGTCATTTTCTTTTTTCAACT
1 TAGTCATTTTCTTTTTTCAACT
74860173 TAGTCATTTTCTTTTTTCAACT
1 TAGTCATTTTCTTTTTTCAACT
74860195 TA
1 TA
74860197 CACCTTGCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.20, C:0.17, G:0.04, T:0.59
Consensus pattern (22 bp):
TAGTCATTTTCTTTTTTCAACT
Done.