Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 240 of 433
Found at i:74862374 original size:19 final size:19
Alignment explanation
Indices: 74862328--74862375 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
74862318 GTATATATTT
74862328 TAAA-TTTATTTAAGTAAA
1 TAAATTTTATTTAAGTAAA
* * *
74862346 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAAGTAAA
*
74862365 TAAGTTTTATT
1 TAAATTTTATT
74862376 AATATTCTAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAAGTAAA
Found at i:74865507 original size:28 final size:28
Alignment explanation
Indices: 74865467--74865522 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
74865457 TTGTGCTGAT
74865467 AGTATGTCATAAATGTGCAAGCAATCAA
1 AGTATGTCATAAATGTGCAAGCAATCAA
74865495 AGTATGTCATAAATGTGCAAGCAATCAA
1 AGTATGTCATAAATGTGCAAGCAATCAA
74865523 TCATTGGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (28 bp):
AGTATGTCATAAATGTGCAAGCAATCAA
Found at i:74867411 original size:28 final size:28
Alignment explanation
Indices: 74867379--74867448 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
74867369 ATAGTAAGTC
74867379 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
74867407 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
74867435 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74867449 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:74871490 original size:49 final size:47
Alignment explanation
Indices: 74871430--74871634 Score: 302
Period size: 47 Copynumber: 4.3 Consensus size: 47
74871420 GTATGAGATA
*
74871430 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
* * *
74871479 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
74871526 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * *
74871573 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
74871620 TATAAATGTGATAAG
1 TATATATGTGATAAG
74871635 TCCCGAAGGG
Statistics
Matches: 144, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 102 0.71
49 42 0.29
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:74873531 original size:22 final size:23
Alignment explanation
Indices: 74873494--74873560 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 23
74873484 GTTTAGACTA
74873494 TGACCATATATA--TTTATATAT
1 TGACCATATATATTTTTATATAT
**
74873515 TGACTGTA-ATATTTTTATACTA-
1 TGACCATATATATTTTTATA-TAT
*
74873537 TGACCATATATATTTATATATAT
1 TGACCATATATATTTTTATATAT
74873560 T
1 T
74873561 ATCTTATGCG
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
20 3 0.08
21 6 0.17
22 14 0.39
23 13 0.36
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (23 bp):
TGACCATATATATTTTTATATAT
Found at i:74873553 original size:21 final size:21
Alignment explanation
Indices: 74873485--74873554 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
74873475 TCTCCATTGG
*
74873485 TTTAGACTATGACCATATATA
1 TTTATACTATGACCATATATA
** *
74873506 TTTATA-TATTGACTGTAATATT
1 TTTATACTA-TGACCAT-ATATA
74873528 TTTATACTATGACCATATATA
1 TTTATACTATGACCATATATA
74873549 TTTATA
1 TTTATA
74873555 TATATTATCT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
20 2 0.05
21 20 0.51
22 15 0.38
23 2 0.05
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (21 bp):
TTTATACTATGACCATATATA
Found at i:74874505 original size:18 final size:18
Alignment explanation
Indices: 74874484--74874531 Score: 96
Period size: 18 Copynumber: 2.7 Consensus size: 18
74874474 AAAATGTGAG
74874484 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
74874502 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
74874520 AAATGATGTTCA
1 AAATGATGTTCA
74874532 AATTGATGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:74875055 original size:72 final size:72
Alignment explanation
Indices: 74874960--74875197 Score: 383
Period size: 72 Copynumber: 3.3 Consensus size: 72
74874950 AAATGCTAAA
*
74874960 CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
74875025 GTGTAAT
66 GTGTAAT
* *
74875032 CTAGTTTTACCAATGGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
74875097 GTGTAAT
66 GTGTAAT
* *
74875104 CTAGTTTTATTAATAGTTGTTTATGTTTGGTATTTGGATATTG-ATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
74875168 ACT-AAAT
66 -GTGTAAT
74875175 -TAGTTTTATCAATAGTTGTTTAT
1 CTAGTTTTATCAATAGTTGTTTAT
74875198 ATATGATTTT
Statistics
Matches: 155, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
70 22 0.14
71 24 0.15
72 109 0.70
ACGTcount: A:0.24, C:0.06, G:0.16, T:0.55
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTGTAAT
Found at i:74877067 original size:19 final size:19
Alignment explanation
Indices: 74877018--74877074 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
74877008 TTACTTAGAA
*
74877018 ATATTTAAA-ATTAATATTAT
1 ATATTAAAATATTAATA--AT
74877038 ATATTAAAATATTAATAAT
1 ATATTAAAATATTAATAAT
74877057 ATATTAAAATATTAATAA
1 ATATTAAAATATTAATAA
74877075 AAAGTTATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
19 20 0.57
20 8 0.23
21 7 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATATTAAAATATTAATAAT
Found at i:74877256 original size:13 final size:13
Alignment explanation
Indices: 74877235--74877274 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
74877225 AAACACTTAA
* *
74877235 ATTTTTCAAAAGT
1 ATTTCTCAAAAGC
74877248 ATTTCTCAAAAGC
1 ATTTCTCAAAAGC
*
74877261 ACTTCTCAAAAGC
1 ATTTCTCAAAAGC
74877274 A
1 A
74877275 CTTTTTCACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (13 bp):
ATTTCTCAAAAGC
Found at i:74877275 original size:13 final size:13
Alignment explanation
Indices: 74877240--74877277 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
74877230 CTTAAATTTT
* *
74877240 TCAAAAGTATTTC
1 TCAAAAGCACTTC
74877253 TCAAAAGCACTTC
1 TCAAAAGCACTTC
74877266 TCAAAAGCACTT
1 TCAAAAGCACTT
74877278 TTTCACAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:74877300 original size:13 final size:13
Alignment explanation
Indices: 74877255--74877300 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
74877245 AGTATTTCTC
* *
74877255 AAAAGCACTTCTC
1 AAAAGCACTTTTT
74877268 AAAAGCACTTTTT
1 AAAAGCACTTTTT
* *
74877281 CACAGCACTTTTT
1 AAAAGCACTTTTT
74877294 AAAAGCA
1 AAAAGCA
74877301 TTGCCAAACT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (13 bp):
AAAAGCACTTTTT
Found at i:74879253 original size:21 final size:21
Alignment explanation
Indices: 74879229--74879281 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
74879219 ATAGGGGTAT
* *
74879229 ACGCCCGTGTGAAAGGGGCAC
1 ACGCCCGTGTGAAAGAGCCAC
*
74879250 ACGCCCATGTGAAAGAGCCAC
1 ACGCCCGTGTGAAAGAGCCAC
74879271 ACGCCCGTGTG
1 ACGCCCGTGTG
74879282 GCCAATTCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.25, C:0.32, G:0.32, T:0.11
Consensus pattern (21 bp):
ACGCCCGTGTGAAAGAGCCAC
Found at i:74881258 original size:29 final size:29
Alignment explanation
Indices: 74881216--74881274 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
74881206 CCATTCATGG
74881216 ATTTCATATTAAGTTGAGTTTCTGTACAT
1 ATTTCATATTAAGTTGAGTTTCTGTACAT
74881245 ATTTCATATTAAGTTGAGTTTCTGTACAT
1 ATTTCATATTAAGTTGAGTTTCTGTACAT
74881274 A
1 A
74881275 CCTGTACCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (29 bp):
ATTTCATATTAAGTTGAGTTTCTGTACAT
Found at i:74881396 original size:28 final size:28
Alignment explanation
Indices: 74881365--74881435 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
74881355 GATACCTCGT
* * *
74881365 ACACTAAGTGCTATTCTGGAT-GTTTCGC
1 ACACTAAGTGCCATTCTCGATACTTT-GC
74881393 ACACTAAGTGCCATTCTCGATACTTTGC
1 ACACTAAGTGCCATTCTCGATACTTTGC
74881421 ACACTAAGTGCCATT
1 ACACTAAGTGCCATT
74881436 TATATATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 36 0.92
29 3 0.08
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (28 bp):
ACACTAAGTGCCATTCTCGATACTTTGC
Found at i:74883490 original size:47 final size:48
Alignment explanation
Indices: 74883412--74883640 Score: 181
Period size: 47 Copynumber: 4.9 Consensus size: 48
74883402 TATAGGGTAA
* * * *
74883412 CGAA-CCGATGCCATGTCCTAGACACGATCTTACATTGGCTCATATCT
1 CGAAGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCT
* * *
74883459 C-AAGTCGATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCT
1 CGAAGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCT
* * * **
74883506 CGTAGCCGAT-ACATGTCCCAGACAT-GTCTTACACTGGCTTACGTCT
1 CGAAGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCT
* * * * *
74883552 CGAGGCCAATG-CATGTACCAGACAT-GTCTTACACTAGCCCTCGT-T-T
1 CGAAGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCATATCT
* *
74883598 C-AATGTCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCA
1 CGAA-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
74883641 CACACGAATG
Statistics
Matches: 144, Mismatches: 28, Indels: 21
0.75 0.15 0.11
Matches are distributed among these distances:
45 1 0.01
46 60 0.42
47 65 0.45
48 18 0.12
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CGAAGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCT
Found at i:74883553 original size:46 final size:47
Alignment explanation
Indices: 74883470--74883638 Score: 150
Period size: 46 Copynumber: 3.6 Consensus size: 47
74883460 AAGTCGATGC
* * *
74883470 CATGTCCCAAACATGGTCTTACACTGAC-TATCATCTCGTA-GCCGATA
1 CATGTCCCAGACATGGTCTTACACTGGCTTA-CGTCTCG-AGGCCGATA
* *
74883517 CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATA
* * * * * * * *
74883563 CATGTACCAGACAT-GTCTTACACTAGCCCT-CGTTTCAATGTCGATGT
1 CATGTCCCAGACATGGTCTTACACT-GGCTTACGTCTCGAGGCCGAT-A
74883610 CATGTCCCAGACATGGTCTTACACTGGCT
1 CATGTCCCAGACATGGTCTTACACTGGCT
74883639 CACACACGAA
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 56 0.56
47 33 0.33
48 10 0.10
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATA
Found at i:74885344 original size:21 final size:20
Alignment explanation
Indices: 74885305--74885345 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
74885295 GGACTCAATT
* *
74885305 GTGAACTTTAAAAATTTTTC
1 GTGAAATTTAAAAAATTTTC
74885325 GTGAAATTTCAAAAAATTTTC
1 GTGAAATTT-AAAAAATTTTC
74885346 CAAGTTACAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (20 bp):
GTGAAATTTAAAAAATTTTC
Found at i:74885407 original size:21 final size:21
Alignment explanation
Indices: 74885381--74885435 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
74885371 TTGGTCCAAG
74885381 GGACACGCCCGTGTGACCCTA
1 GGACACGCCCGTGTGACCCTA
74885402 GGACACGCCCGTGTGACCCTA
1 GGACACGCCCGTGTGACCCTA
74885423 GGACACGCCCGTG
1 GGACACGCCCGTG
74885436 CTGCAGGCTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.18, C:0.38, G:0.31, T:0.13
Consensus pattern (21 bp):
GGACACGCCCGTGTGACCCTA
Found at i:74887483 original size:38 final size:38
Alignment explanation
Indices: 74887441--74887518 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
74887431 TATTTTGGGG
74887441 ATGAAGATGAGATAAAATAAGATGATATTTCTTTTATC
1 ATGAAGATGAGATAAAATAAGATGATATTTCTTTTATC
74887479 ATGAAGATGAGATAAAATAAGATGATATTTCTTTTATC
1 ATGAAGATGAGATAAAATAAGATGATATTTCTTTTATC
74887517 AT
1 AT
74887519 ACTTTAATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.42, C:0.05, G:0.15, T:0.37
Consensus pattern (38 bp):
ATGAAGATGAGATAAAATAAGATGATATTTCTTTTATC
Found at i:74887956 original size:42 final size:42
Alignment explanation
Indices: 74887892--74887980 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
74887882 TATTATAGTC
* *
74887892 AGGCCGTGTAACTCTCGTAATAGCCCCACACGCCTGTGTGCT
1 AGGCCGTGTAACTCTCGAAATAGCCCCACACGCCTATGTGCT
**
74887934 AGGCCGTGTAACTCTCGAAATAGCTTCACACGCCTATGTGCT
1 AGGCCGTGTAACTCTCGAAATAGCCCCACACGCCTATGTGCT
74887976 AGGCC
1 AGGCC
74887981 ATATACTACC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.24
Consensus pattern (42 bp):
AGGCCGTGTAACTCTCGAAATAGCCCCACACGCCTATGTGCT
Found at i:74888825 original size:23 final size:23
Alignment explanation
Indices: 74888795--74888846 Score: 86
Period size: 23 Copynumber: 2.2 Consensus size: 23
74888785 ATCAAGGATT
74888795 TCATACATGAAAATTATAAAACA
1 TCATACATGAAAATTATAAAACA
*
74888818 TCATACATGAAAATTATAAAGCA
1 TCATACATGAAAATTATAAAACA
74888841 TACATA
1 T-CATA
74888847 TTCGAGATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.54, C:0.13, G:0.06, T:0.27
Consensus pattern (23 bp):
TCATACATGAAAATTATAAAACA
Found at i:74889724 original size:45 final size:45
Alignment explanation
Indices: 74889660--74889753 Score: 188
Period size: 45 Copynumber: 2.1 Consensus size: 45
74889650 CACTACAAGC
74889660 AATAATCACATCTAACTATACACACACATATATATATCATAATCG
1 AATAATCACATCTAACTATACACACACATATATATATCATAATCG
74889705 AATAATCACATCTAACTATACACACACATATATATATCATAATCG
1 AATAATCACATCTAACTATACACACACATATATATATCATAATCG
74889750 AATA
1 AATA
74889754 TGCCAAACAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.48, C:0.21, G:0.02, T:0.29
Consensus pattern (45 bp):
AATAATCACATCTAACTATACACACACATATATATATCATAATCG
Found at i:74890603 original size:44 final size:45
Alignment explanation
Indices: 74890517--74890604 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
74890507 TTACATGTAA
* *
74890517 TCACATATCGATGCCATGGTCTTTACTCGTACACATATATCGGAG
1 TCACATATCGATGCCATGGTCTTTACTCGCACACATAAATCGGAG
74890562 TCACATATCGATGCCATGGTC-TTACTCGCACACATAAATCGGA
1 TCACATATCGATGCCATGGTCTTTACTCGCACACATAAATCGGA
74890605 ATCCTATGTC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 20 0.49
45 21 0.51
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (45 bp):
TCACATATCGATGCCATGGTCTTTACTCGCACACATAAATCGGAG
Found at i:74892498 original size:36 final size:36
Alignment explanation
Indices: 74892415--74892484 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
74892405 GAATCCCACC
* * **
74892415 AAAACACACCAGATGCTCATAAGAGCTAGTCCATCT
1 AAAACACACCAAATGGTCATAAGAGCTAACCCATCT
74892451 AAAACACACCAAATGGTCATAAGAGCTAACCCAT
1 AAAACACACCAAATGGTCATAAGAGCTAACCCAT
74892485 TCGGAACACA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.43, C:0.27, G:0.13, T:0.17
Consensus pattern (36 bp):
AAAACACACCAAATGGTCATAAGAGCTAACCCATCT
Found at i:74899388 original size:18 final size:19
Alignment explanation
Indices: 74899358--74899394 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
74899348 TGGGTCAGTT
74899358 GTCAGGAGCTTGGA-CTGC
1 GTCAGGAGCTTGGATCTGC
74899376 GTCAGTGAG-TTGGATCTGC
1 GTCAG-GAGCTTGGATCTGC
74899395 TCTAAGGCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.16, C:0.19, G:0.38, T:0.27
Consensus pattern (19 bp):
GTCAGGAGCTTGGATCTGC
Found at i:74905338 original size:108 final size:108
Alignment explanation
Indices: 74905125--74905325 Score: 296
Period size: 108 Copynumber: 1.9 Consensus size: 108
74905115 GATACTACCA
* * * *
74905125 GAGTAAACCAAAATAATAGCTTCAAGATGACCAATTCTAGCTGACAGTCGCATTGTATTATGAGT
1 GAGTAAACCAAAATAATACCTTCAAGATAACCAATTCTAGCTGACAGACGCATTATATTATGAGT
*
74905190 TTGGGACCCATTGAGAGCATGTAGGGACAAAACTGATGCTATC
66 TTGGGACCCATTGAGAGCATATAGGGACAAAACTGATGCTATC
* * * *
74905233 GAGTCAACCAGAATAATACCTTCAAGATAACCAATTCTAGCTGACA-ACATCATTATATTGTGAG
1 GAGTAAACCAAAATAATACCTTCAAGATAACCAATTCTAGCTGACAGAC-GCATTATATTATGAG
*
74905297 TTTGGGACCCGTTGAGAGCATATAGGGAC
65 TTTGGGACCCATTGAGAGCATATAGGGAC
74905326 TGAACTGGTG
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
107 1 0.01
108 81 0.99
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (108 bp):
GAGTAAACCAAAATAATACCTTCAAGATAACCAATTCTAGCTGACAGACGCATTATATTATGAGT
TTGGGACCCATTGAGAGCATATAGGGACAAAACTGATGCTATC
Found at i:74907325 original size:25 final size:25
Alignment explanation
Indices: 74907272--74907318 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
74907262 GGGAGGATTT
74907272 TTAT-TTTATTTAATATGAATATAA
1 TTATATTTATTTAATATGAATATAA
*
74907296 TTATATTTATTTAATATTAATAT
1 TTATATTTATTTAATATGAATAT
74907319 TAATATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (25 bp):
TTATATTTATTTAATATGAATATAA
Found at i:74909259 original size:19 final size:19
Alignment explanation
Indices: 74909218--74909259 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
74909208 CATAGAATGC
*
74909218 AAAACATGTGAGATTATCG
1 AAAACATGTGAGATTATCA
74909237 AAAACATGTGAGATTATCA
1 AAAACATGTGAGATTATCA
74909256 AAAA
1 AAAA
74909260 ATATAGAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.24
Consensus pattern (19 bp):
AAAACATGTGAGATTATCA
Found at i:74909268 original size:19 final size:19
Alignment explanation
Indices: 74909226--74909268 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
74909216 GCAAAACATG
* *
74909226 TGAGATTATCGAAAACATG
1 TGAGATTATCGAAAAAATA
74909245 TGAGATTATC-AAAAAATA
1 TGAGATTATCGAAAAAATA
74909263 TAGAGA
1 T-GAGA
74909269 AAAAGGTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.26
Consensus pattern (19 bp):
TGAGATTATCGAAAAAATA
Found at i:74909395 original size:18 final size:18
Alignment explanation
Indices: 74909372--74909408 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
74909362 TGCATGCAAC
*
74909372 GTAAGTTCGCATACAAAA
1 GTAAGTTCCCATACAAAA
*
74909390 GTAAGTTCCCATGCAAAA
1 GTAAGTTCCCATACAAAA
74909408 G
1 G
74909409 AGTTCATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (18 bp):
GTAAGTTCCCATACAAAA
Found at i:74911374 original size:21 final size:21
Alignment explanation
Indices: 74911336--74911375 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74911326 TGGGCAAGCC
*
74911336 ACCACATAATTGCCGATAACA
1 ACCACATAATTGCAGATAACA
*
74911357 ACCACATAATTGTAGATAA
1 ACCACATAATTGCAGATAA
74911376 ACTGCCACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.23, G:0.10, T:0.23
Consensus pattern (21 bp):
ACCACATAATTGCAGATAACA
Found at i:74915465 original size:24 final size:25
Alignment explanation
Indices: 74915438--74915506 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
74915428 CACACCACAA
* * *
74915438 CTCTTATGAGCTTACCGGTT-TTAT
1 CTCTTATGAGCTTACCGATTCTCAG
*
74915462 CTCTTGA-GAGCTTATCGATTCTCAG
1 CTCTT-ATGAGCTTACCGATTCTCAG
*
74915487 CTCGTATGAGCTTACCGATT
1 CTCTTATGAGCTTACCGATT
74915507 TACAACTCGT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
24 17 0.47
25 19 0.53
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (25 bp):
CTCTTATGAGCTTACCGATTCTCAG
Found at i:74915505 original size:25 final size:25
Alignment explanation
Indices: 74915469--74915546 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
74915459 TATCTCTTGA
*
74915469 GAGCTTATCGATTCTCAGCTCGTAT
1 GAGCTTACCGATTCTCAGCTCGTAT
*
74915494 GAGCTTACCGATT-TACAACTCGTGA-
1 GAGCTTACCGATTCT-CAGCTCGT-AT
*
74915519 GAGCATACC-ATTCAT-AGCTCGTAT
1 GAGCTTACCGATTC-TCAGCTCGTAT
74915543 GAGC
1 GAGC
74915547 ATACATGTAC
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
23 1 0.02
24 14 0.32
25 27 0.61
26 2 0.05
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (25 bp):
GAGCTTACCGATTCTCAGCTCGTAT
Found at i:74915538 original size:49 final size:49
Alignment explanation
Indices: 74915442--74915546 Score: 124
Period size: 49 Copynumber: 2.1 Consensus size: 49
74915432 CCACAACTCT
* * * * * *
74915442 TATGAGCTTACCGGTTTTATCTCTTGAGAGCTTATCGATTCTCAGCTCG
1 TATGAGCTTACCGATTTCAACTCGTGAGAGCATATCCATTCTCAGCTCG
74915491 TATGAGCTTACCGATTTACAACTCGTGAGAGCATA-CCATTCAT-AGCTCG
1 TATGAGCTTACCGATTT-CAACTCGTGAGAGCATATCCATTC-TCAGCTCG
74915540 TATGAGC
1 TATGAGC
74915547 ATACATGTAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
49 34 0.71
50 14 0.29
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (49 bp):
TATGAGCTTACCGATTTCAACTCGTGAGAGCATATCCATTCTCAGCTCG
Found at i:74915546 original size:24 final size:25
Alignment explanation
Indices: 74915477--74915550 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
74915467 GAGAGCTTAT
* *
74915477 CGATTCTCAGCTCGTATGAGCTTAC
1 CGATTCACAGCTCGTATGAGCATAC
* *
74915502 CGATTTACAACTCGTGA-GAGCATAC
1 CGATTCACAGCTCGT-ATGAGCATAC
*
74915527 C-ATTCATAGCTCGTATGAGCATAC
1 CGATTCACAGCTCGTATGAGCATAC
74915551 ATGTACAAGA
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
23 1 0.03
24 18 0.45
25 20 0.50
26 1 0.03
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (25 bp):
CGATTCACAGCTCGTATGAGCATAC
Found at i:74915749 original size:30 final size:31
Alignment explanation
Indices: 74915692--74915750 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 31
74915682 TATACATGAA
74915692 ATACATGGAAATGATATTACATGATATATTG
1 ATACATGGAAATGATATTACATGATATATTG
74915723 ATACAT-GAAATGGATGA-TACAT-ATATAT
1 ATACATGGAAAT-GAT-ATTACATGATATAT
74915751 GAAACTTGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
30 11 0.42
31 14 0.54
32 1 0.04
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (31 bp):
ATACATGGAAATGATATTACATGATATATTG
Found at i:74917262 original size:14 final size:14
Alignment explanation
Indices: 74917240--74917288 Score: 80
Period size: 14 Copynumber: 3.5 Consensus size: 14
74917230 TACTGGTGAA
74917240 TACAGATTATAACT
1 TACAGATTATAACT
*
74917254 TATAGATTATAACT
1 TACAGATTATAACT
74917268 TACAGATTATAACT
1 TACAGATTATAACT
*
74917282 TGCAGAT
1 TACAGAT
74917289 AGTGAGATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (14 bp):
TACAGATTATAACT
Found at i:74923522 original size:2 final size:2
Alignment explanation
Indices: 74923515--74923556 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
74923505 ACCAGAACAG
74923515 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74923557 GTGGCGAAGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74923913 original size:8 final size:8
Alignment explanation
Indices: 74923900--74923930 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
74923890 AAGTGGGACG
74923900 TTGGCCCA
1 TTGGCCCA
*
74923908 TTGGCCCT
1 TTGGCCCA
74923916 TTGGCCCA
1 TTGGCCCA
74923924 TTGGCCC
1 TTGGCCC
74923931 GTTTTTGGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.06, C:0.39, G:0.26, T:0.29
Consensus pattern (8 bp):
TTGGCCCA
Found at i:74923921 original size:16 final size:17
Alignment explanation
Indices: 74923900--74923944 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
74923890 AAGTGGGACG
74923900 TTGGCCCATTGGCCC-T
1 TTGGCCCATTGGCCCTT
74923916 TTGGCCCATTGGCCCGTTT
1 TTGGCCCATTGGCCC--TT
74923935 TTGGCCCATT
1 TTGGCCCATT
74923945 AAGCCCAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.58
19 11 0.42
ACGTcount: A:0.07, C:0.33, G:0.24, T:0.36
Consensus pattern (17 bp):
TTGGCCCATTGGCCCTT
Found at i:74936761 original size:25 final size:24
Alignment explanation
Indices: 74936691--74936762 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
74936681 CCATAGCCCG
* ** *
74936691 TATGAGCTTACCGATTTCAATTCC
1 TATGAGCTTATCGATTTCAGCTCA
* *
74936715 TAGGAGCTTATCAATTCTCAGCTCA
1 TATGAGCTTATCGATT-TCAGCTCA
74936740 TATGAGCTTATCGATTTACAGCT
1 TATGAGCTTATCGATTT-CAGCT
74936763 TGTGAGAGCA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
24 14 0.37
25 24 0.63
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (24 bp):
TATGAGCTTATCGATTTCAGCTCA
Found at i:74940262 original size:29 final size:29
Alignment explanation
Indices: 74940209--74940302 Score: 93
Period size: 28 Copynumber: 3.3 Consensus size: 29
74940199 ATTGCATGAC
* *
74940209 TATGAATGTGATTGGGGCC-GATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
74940237 TATGAATGTGATTTGGGCCTAATGGGTCG
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* * * *
74940266 TATGGATGAGA-TTGGGCCTAGTGGGCGA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
74940294 TATGTATGT
1 TATGAATGT
74940303 ATGTAGACTT
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
28 38 0.72
29 15 0.28
ACGTcount: A:0.21, C:0.11, G:0.37, T:0.31
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:74945190 original size:12 final size:12
Alignment explanation
Indices: 74945173--74945197 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74945163 GTCAGCGATG
74945173 ATAATCTACAAA
1 ATAATCTACAAA
74945185 ATAATCTACAAA
1 ATAATCTACAAA
74945197 A
1 A
74945198 ATTGATAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAATCTACAAA
Found at i:74947544 original size:27 final size:27
Alignment explanation
Indices: 74947514--74947565 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
74947504 CTCAATATTG
*
74947514 GTAAAATCACCATAATACCTTTGTACT
1 GTAAAATCACCATAATACCCTTGTACT
* * *
74947541 GTAAAATGATCGTAATACCCTTGTA
1 GTAAAATCACCATAATACCCTTGTA
74947566 TGGTAGAATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.33
Consensus pattern (27 bp):
GTAAAATCACCATAATACCCTTGTACT
Found at i:74947850 original size:22 final size:22
Alignment explanation
Indices: 74947820--74947874 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
74947810 TACGGCCTAT
*
74947820 AGCCATCCTGTCTACGGCGTTG
1 AGCCGTCCTGTCTACGGCGTTG
* * *
74947842 AGCTGTCCTATCTACGTCGTTG
1 AGCCGTCCTGTCTACGGCGTTG
74947864 AGCCGTCCTGT
1 AGCCGTCCTGT
74947875 TCACTTAGTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.13, C:0.31, G:0.25, T:0.31
Consensus pattern (22 bp):
AGCCGTCCTGTCTACGGCGTTG
Found at i:74948920 original size:31 final size:31
Alignment explanation
Indices: 74948879--74948942 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
74948869 CCTTTTCATA
* *
74948879 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
74948910 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
74948941 TT
1 TT
74948943 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:74949178 original size:25 final size:23
Alignment explanation
Indices: 74949135--74949328 Score: 219
Period size: 25 Copynumber: 8.0 Consensus size: 23
74949125 TGCTTTATCA
*
74949135 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
74949159 TAGTAACTGGGGCAAAAGCCCTTT
1 TA-TAACTGGGGCATAAGCCCTTT
74949183 GTATAACTGGGGCATAAGCCCTTT
1 -TATAACTGGGGCATAAGCCCTTT
*
74949207 ATCACAACTGGGGCATAAGCCCTTCAT
1 -T-ATAACTGGGGCATAAGCCCTT--T
*
74949234 CATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
74949257 ATCATAACTGGGGCATAAGCTCTTT
1 -T-ATAACTGGGGCATAAGCCCTTT
*
74949282 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
* *
74949305 AATAATTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
74949328 T
1 T
74949329 GCACTTCCTC
Statistics
Matches: 149, Mismatches: 13, Indels: 17
0.83 0.07 0.09
Matches are distributed among these distances:
23 44 0.30
24 30 0.20
25 74 0.50
27 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:74949402 original size:20 final size:20
Alignment explanation
Indices: 74949374--74949457 Score: 150
Period size: 20 Copynumber: 4.2 Consensus size: 20
74949364 GCATTTATGA
*
74949374 ACATCTCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
74949394 ACATGTCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
*
74949414 ACATATCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
74949434 ACATGTCATGTGCATATCAT
1 ACATGTCATGTGCATATCAT
74949454 ACAT
1 ACAT
74949458 ACCATGTTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATGTCATGTGCATATCAT
Found at i:74949429 original size:11 final size:11
Alignment explanation
Indices: 74949379--74949453 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
74949369 TATGAACATC
74949379 TCATGTGCATA
1 TCATGTGCATA
* *
74949390 TCA--TACATG
1 TCATGTGCATA
74949399 TCATGTGCATA
1 TCATGTGCATA
*
74949410 TCA--TACATA
1 TCATGTGCATA
74949419 TCATGTGCATA
1 TCATGTGCATA
* *
74949430 TCA--TACATG
1 TCATGTGCATA
74949439 TCATGTGCATA
1 TCATGTGCATA
74949450 TCAT
1 TCAT
74949454 ACATACCATG
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 22 0.46
11 26 0.54
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:74949533 original size:25 final size:25
Alignment explanation
Indices: 74949501--74949548 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
74949491 ATGTATAAAC
* *
74949501 CCTAGGGGCATAATGGTCATTTTTA
1 CCTAGGGGAAAAATGGTCATTTTTA
74949526 CCTAGGGGAAAAATGGTCATTTT
1 CCTAGGGGAAAAATGGTCATTTT
74949549 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGAAAAATGGTCATTTTTA
Found at i:74950795 original size:27 final size:27
Alignment explanation
Indices: 74950704--74950787 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
74950694 GGGCATATTC
* *
74950704 GTCATTTTACCATACAGGGG-TATTACA
1 GTCACTTTACCATACAGGGGCT-TTACG
74950731 GTCACTTTACCATACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
74950758 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
74950785 GTC
1 GTC
74950788 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:74950879 original size:27 final size:27
Alignment explanation
Indices: 74950849--74951078 Score: 131
Period size: 27 Copynumber: 8.4 Consensus size: 27
74950839 GTAAATCTAC
*
74950849 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *
74950876 AAACTAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* * * *
74950904 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* ** *
74950932 AAATC-AGGGTTATTTTGGTAATTTTAC
1 AAACCAAGGG-TATTTCAGTAATTTTAT
*** * * *
74950959 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
74950986 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
74951013 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *
74951040 AAACTAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
74951067 AAATCGAGGGTA
1 AAACCAAGGGTA
74951079 AAACAGTAAT
Statistics
Matches: 164, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
26 4 0.02
27 129 0.79
28 18 0.11
29 13 0.08
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:74951000 original size:54 final size:54
Alignment explanation
Indices: 74950937--74951078 Score: 187
Period size: 54 Copynumber: 2.6 Consensus size: 54
74950927 TTTGTAAATC
74950937 AGGGTTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 AGGG-TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
* * * *
74950992 AGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCA
* ** *
74951046 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTA
74951079 AAACAGTAAT
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
53 1 0.01
54 70 0.92
55 5 0.07
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
Found at i:74951077 original size:81 final size:79
Alignment explanation
Indices: 74950826--74951078 Score: 215
Period size: 81 Copynumber: 3.1 Consensus size: 79
74950816 TTTCATCCTA
* * * * ** ** *
74950826 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACTAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
74950891 CTA-TAATTTTTAGAAAGT
65 -TAGTAATTTTT--AAA-T
* * * *
74950909 CAAGGGTATTTCT-GTAACTTTGTA-AATCAGGGTTATTTTGGTAATTTTACAAATTGAGGGTAT
1 CAAGGGTATTT-TGGTAA-TTT-TACAAACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTAT
** ** *
74950972 TTCGGTAATTTCACAAAC
63 TTTAGTAATTT-TTAAAT
74950990 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
74951055 TAGTAATTTTGTAAAT
65 TAGTAATTTT-TAAAT
*
74951071 CGAGGGTA
1 CAAGGGTA
74951079 AAACAGTAAT
Statistics
Matches: 133, Mismatches: 28, Indels: 20
0.73 0.15 0.11
Matches are distributed among these distances:
79 2 0.02
80 7 0.05
81 66 0.50
82 3 0.02
83 49 0.37
84 4 0.03
85 2 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (79 bp):
CAAGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
AGTAATTTTTAAAT
Found at i:74951086 original size:27 final size:26
Alignment explanation
Indices: 74951057--74951266 Score: 206
Period size: 27 Copynumber: 7.8 Consensus size: 26
74951047 GGGTATTTTA
*
74951057 GTAATTTTGTAAATCGAGGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAC
** *
74951083 AGTAATTCTGTAAATTAAGGGTAAAATA
1 -GTAATTCTGTAAATCGAGGGTAAAA-C
* *
74951111 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAA-C
*
74951138 GTAATTCTGTAAATTGAGGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAC
* *
74951164 GGTAATTCTATAAGTCGAGGGTAAAAC
1 -GTAATTCTGTAAATCGAGGGTAAAAC
* * *
74951191 GATAATTATGTAATTAG-GGGTAAAAC
1 G-TAATTCTGTAAATCGAGGGTAAAAC
* *
74951217 GATAATTATGTAAATCGGGGGTAAAAC
1 G-TAATTCTGTAAATCGAGGGTAAAAC
* *
74951244 GATAATTATGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
74951267 CTTTGGTAAT
Statistics
Matches: 159, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 25 0.16
27 134 0.84
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.30
Consensus pattern (26 bp):
GTAATTCTGTAAATCGAGGGTAAAAC
Found at i:74951088 original size:54 final size:54
Alignment explanation
Indices: 74951030--74951190 Score: 160
Period size: 54 Copynumber: 3.0 Consensus size: 54
74951020 GGGTATTTTG
* *** * *
74951030 GTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTACAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
** * **
74951084 GTAATTCTGTAAATTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTACAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
** * * ** *
74951138 GTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTATAAGTCGAGGGTAAAAC
1 GTAATTCTACAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
74951191 GATAATTATG
Statistics
Matches: 91, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (54 bp):
GTAATTCTACAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:74951197 original size:54 final size:53
Alignment explanation
Indices: 74951057--74951258 Score: 237
Period size: 54 Copynumber: 3.8 Consensus size: 53
74951047 GGGTATTTTA
* * * **
74951057 GTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATTAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACGA-TAATTATGTAAATT-AGGGTAAAACG
* * *
74951111 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGATAATTATGTAAATT-AGGGTAAAACG
*
74951165 GTAATTCTATAAGTCGAGGGTAAAACGATAATTATGT-AATTAGGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGATAATTATGTAAATTA-GGGTAAAACG
* * * *
74951218 ATAATTATGTAAATCGGGGGTAAAACGATAATTATGTAAAT
1 GTAATTCTATAAATCGAGGGTAAAACGATAATTATGTAAAT
74951259 CGGGGGTACT
Statistics
Matches: 129, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.01
53 46 0.36
54 82 0.64
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.30
Consensus pattern (53 bp):
GTAATTCTATAAATCGAGGGTAAAACGATAATTATGTAAATTAGGGTAAAACG
Found at i:74951275 original size:107 final size:108
Alignment explanation
Indices: 74951046--74951293 Score: 259
Period size: 107 Copynumber: 2.3 Consensus size: 108
74951036 TTACAAACTA
* * * * * *
74951046 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATTAAGGGTAAAATA
1 AGGGTAATTTGGTAATTTTATAAGTCGAGGGTAAAACAGTAATTATGTAAATTAAGGGTAAAAGA
* * * * *
74951111 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTG
66 GTAATTATATAAATCGAGGGTAAAACGATAATTATGTAAATCG
*** * *
74951154 AGGGTAAAACGGTAATTCTATAAGTCGAGGGTAAAAC-GATAATTATGT-AATTAGGGGTAAAAC
1 AGGGTAATTTGGTAATTTTATAAGTCGAGGGTAAAACAG-TAATTATGTAAATTAAGGGTAAAA-
* *
74951217 GA-TAATTATGTAAATCGGGGGTAAAACGATAATTATGTAAATCG
64 GAGTAATTATATAAATCGAGGGTAAAACGATAATTATGTAAATCG
* * * *
74951261 GGGGTACTTTGGTAATTTTACAAGTCGAAGGTA
1 AGGGTAATTTGGTAATTTTATAAGTCGAGGGTA
74951294 TTTCAGTAAT
Statistics
Matches: 112, Mismatches: 26, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
107 74 0.66
108 38 0.34
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (108 bp):
AGGGTAATTTGGTAATTTTATAAGTCGAGGGTAAAACAGTAATTATGTAAATTAAGGGTAAAAGA
GTAATTATATAAATCGAGGGTAAAACGATAATTATGTAAATCG
Found at i:74951293 original size:27 final size:26
Alignment explanation
Indices: 74951272--74951361 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 26
74951262 GGGTACTTTG
74951272 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
74951299 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * **
74951326 GTATTTTTACAAACTAAGGGTATTTTG
1 GTAATTTTACAATCGAA-GGTATTTCA
74951353 GTAATTTTA
1 GTAATTTTA
74951362 GTAAACTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.08
27 47 0.89
28 2 0.04
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:74956237 original size:20 final size:20
Alignment explanation
Indices: 74956212--74956276 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
74956202 TACATTATCT
74956212 ACATTACTGGTGGCTTGTCC
1 ACATTACTGGTGGCTTGTCC
** * *
74956232 ACATTACTGGCAGCTTTTCT
1 ACATTACTGGTGGCTTGTCC
* * *
74956252 ACAATACTGGTGGCTAGTTC
1 ACATTACTGGTGGCTTGTCC
74956272 ACATT
1 ACATT
74956277 TCTTACAATT
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (20 bp):
ACATTACTGGTGGCTTGTCC
Found at i:74958007 original size:13 final size:13
Alignment explanation
Indices: 74957986--74958027 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
74957976 AAGGAGGAGT
*
74957986 TTTTACATGGGGA
1 TTTTGCATGGGGA
*
74957999 TTTTGCATGAGGA
1 TTTTGCATGGGGA
*
74958012 TTTTGGATGGGGA
1 TTTTGCATGGGGA
74958025 TTT
1 TTT
74958028 GGGAGAGTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.19, C:0.05, G:0.33, T:0.43
Consensus pattern (13 bp):
TTTTGCATGGGGA
Found at i:74959530 original size:14 final size:14
Alignment explanation
Indices: 74959513--74959543 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
74959503 AAAAACTAGA
*
74959513 AAATAAAGTAAAAT
1 AAATAAAATAAAAT
74959527 AAATAAAATAAAAT
1 AAATAAAATAAAAT
74959541 AAA
1 AAA
74959544 GTTCTAATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:74959811 original size:34 final size:34
Alignment explanation
Indices: 74959773--74959841 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
74959763 GGAAAATGTG
74959773 TTAATGCACATACATACTTATGAAACTAAAATAA
1 TTAATGCACATACATACTTATGAAACTAAAATAA
74959807 TTAATGCACATACATACTTATGAAACTAAAATAA
1 TTAATGCACATACATACTTATGAAACTAAAATAA
74959841 T
1 T
74959842 CTCTTGTACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.30
Consensus pattern (34 bp):
TTAATGCACATACATACTTATGAAACTAAAATAA
Found at i:74963309 original size:37 final size:37
Alignment explanation
Indices: 74963250--74963355 Score: 167
Period size: 37 Copynumber: 2.9 Consensus size: 37
74963240 AGCTCAGATG
* *
74963250 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
74963287 AAATCTCCATACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
74963324 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
74963356 AGAATATATT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:74963630 original size:48 final size:48
Alignment explanation
Indices: 74963504--74963688 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
74963494 ACACATCGCC
*
74963504 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
74963554 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
74963602 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
74963650 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
74963689 TGCATGTTCA
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:74963693 original size:98 final size:97
Alignment explanation
Indices: 74963504--74963687 Score: 300
Period size: 98 Copynumber: 1.9 Consensus size: 97
74963494 ACACATCGCC
*
74963504 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
74963569 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
74963602 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
*
74963665 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCAGCTTTACCACATAT
74963688 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 45 0.56
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:74963737 original size:47 final size:47
Alignment explanation
Indices: 74963658--74963851 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
74963648 CATACATATT
* * * *
74963658 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
74963705 CCATATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
74963752 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
74963799 TCACATTGGCCATTCCGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
74963846 TCACAT
1 TCACAT
74963852 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:74968026 original size:40 final size:39
Alignment explanation
Indices: 74967981--74968110 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
74967971 CGGAATATAA
74967981 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
74968021 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74968061 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
74968101 CCGGATATAA
1 CCGGATATAA
74968111 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74968125 original size:40 final size:40
Alignment explanation
Indices: 74967997--74968148 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
74967987 ATAACCATGT
* * *
74967997 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
74968037 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
74968077 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
74968117 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
74968149 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:74968131 original size:80 final size:80
Alignment explanation
Indices: 74967997--74968146 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
74967987 ATAACCATGT
*
74967997 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
74968061 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
74968077 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
74968140 CCCGGAT
64 CCCGGAT
74968147 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:74973739 original size:22 final size:22
Alignment explanation
Indices: 74973713--74973787 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
74973703 AGTATTAATT
74973713 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * * ***
74973735 ATGTGATGATG-TGAAAGTGTATA
1 ATGTGATAAGGCCG-AA-TGGCCA
74973758 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
74973781 ATGTGAT
1 ATGTGAT
74973788 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 12, Indels: 8
0.65 0.21 0.14
Matches are distributed among these distances:
21 1 0.03
22 18 0.49
23 6 0.16
24 11 0.30
25 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:74973750 original size:55 final size:51
Alignment explanation
Indices: 74973689--74973801 Score: 146
Period size: 46 Copynumber: 2.2 Consensus size: 51
74973679 AATGATCAAT
74973689 TGTGAAAAGTGTGTAGTATTAATTATGTGATAAGGCCGAATGGCCAATGTGATG-A
1 TGTG-AAAGTGTGT-GTA-T-A-TATGTGATAAGGCCGAATGGCCAATGTGATGAA
74973744 TGTGAAA----GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
1 TGTGAAAGTGTGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
74973791 TGTGAAAGTGT
1 TGTGAAAGTGT
74973802 ATAAATGTGA
Statistics
Matches: 53, Mismatches: 0, Indels: 14
0.79 0.00 0.21
Matches are distributed among these distances:
46 31 0.58
47 9 0.17
48 1 0.02
49 3 0.06
50 2 0.04
54 3 0.06
55 4 0.08
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (51 bp):
TGTGAAAGTGTGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAA
Found at i:74973766 original size:46 final size:47
Alignment explanation
Indices: 74973712--74973815 Score: 192
Period size: 46 Copynumber: 2.2 Consensus size: 47
74973702 TAGTATTAAT
74973712 TATGTGATAAGGCCGAATGGCCAATGTGATG-ATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
74973758 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
74973805 AATGTGATAAG
1 TATGTGATAAG
74973816 TCCCGAAGGA
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
46 31 0.55
47 25 0.45
ACGTcount: A:0.35, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:74975878 original size:38 final size:38
Alignment explanation
Indices: 74975776--74975880 Score: 106
Period size: 38 Copynumber: 2.8 Consensus size: 38
74975766 AATCCGAGTT
* * * *
74975776 TAAAGACCCGCTGACTATATGTAGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
* * *
74975814 TAAAGACCCGATGGCTATGTACAGAGATTATGTCTGGA
1 TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
*
74975852 TTAAGACCC-ACTGGCT-TCATATAGAGATT
1 TAAAGACCCGA-TGGCTAT-ATATAGAGATT
74975881 TCATCCGAGC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
37 2 0.04
38 53 0.96
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (38 bp):
TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
Found at i:74975964 original size:40 final size:40
Alignment explanation
Indices: 74975908--74976133 Score: 353
Period size: 40 Copynumber: 5.7 Consensus size: 40
74975898 CTCGACGATG
* * *
74975908 ATCCGGGCTAAGTCCCGAAGGGCATTCGTACCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCATGCCGGTGTTAT
74975948 ATCCGGGCTAAATCCCGAAGGGCATTCATGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCATGCCGGTGTTAT
*
74975988 ATCCGGGCTAAATCCCGAAGGGCATTCATGCCGGTGCTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCATGCCGGTGTTAT
* *
74976028 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCAGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCATGCCGGTGTTAT
* * * *
74976068 ATCTGGGCTAAATCCCGAAGGGTATTCATGTCGATGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCATGCCGGTGTTAT
*
74976108 ATCCGGGCTAAGTCCCGAAGGGCATT
1 ATCCGGGCTAAATCCCGAAGGGCATT
74976134 TGTGACAGCC
Statistics
Matches: 170, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAATCCCGAAGGGCATTCATGCCGGTGTTAT
Found at i:74977616 original size:49 final size:49
Alignment explanation
Indices: 74977559--74977892 Score: 509
Period size: 49 Copynumber: 6.9 Consensus size: 49
74977549 AAGGTGCATG
74977559 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
74977608 TAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
74977657 TAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
74977706 TAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
74977755 TAATGGCTGATGTGAGGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * *
74977802 GAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * *
74977849 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
74977893 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
47 95 0.35
48 1 0.00
49 172 0.64
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:74980071 original size:79 final size:79
Alignment explanation
Indices: 74979976--74980205 Score: 334
Period size: 79 Copynumber: 2.9 Consensus size: 79
74979966 GAGAATTGAG
*
74979976 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTCCGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGA
74980041 AGAGCATTCGTGCT
66 AGAGCATTCGTGCT
* * * *
74980055 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACAAAGTTCGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGA
74980120 AGAGCATTCGTGCT
66 AGAGCATTCGTGCT
* * ** * * * *
74980134 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT-CCG
74980199 AAGAGCA
65 AAGAGCA
74980206 ATCATGCTGG
Statistics
Matches: 133, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 124 0.93
80 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (79 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGA
AGAGCATTCGTGCT
Found at i:74980217 original size:40 final size:40
Alignment explanation
Indices: 74979976--74980205 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
74979966 GAGAATTGAG
74979976 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74980016 AGTAATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74980055 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
74980095 AGTGATGTATCCGGACAAAGT-TCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
74980134 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
74980174 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
74980206 ATCATGCTGG
Statistics
Matches: 170, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 71 0.42
40 99 0.58
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:74983091 original size:49 final size:49
Alignment explanation
Indices: 74983034--74983367 Score: 509
Period size: 49 Copynumber: 6.9 Consensus size: 49
74983024 AAGGTGCATG
74983034 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
74983083 TAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
74983132 TAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
74983181 TAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
74983230 TAATGGCTGATGTGAGGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * *
74983277 GAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * *
74983324 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
74983368 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
47 95 0.35
48 1 0.00
49 172 0.64
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:74985695 original size:40 final size:40
Alignment explanation
Indices: 74985452--74985683 Score: 329
Period size: 40 Copynumber: 5.8 Consensus size: 40
74985442 GAGAATTGAG
74985452 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74985492 AGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74985532 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * **
74985572 AGTGATGTATCCAGACAAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
74985612 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
74985652 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
74985684 ATCATGCTGG
Statistics
Matches: 170, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:74989803 original size:49 final size:49
Alignment explanation
Indices: 74989739--74989924 Score: 363
Period size: 49 Copynumber: 3.8 Consensus size: 49
74989729 ATGATAGTAT
74989739 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
*
74989788 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
74989837 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
74989886 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
74989925 TGGCTGGTGT
Statistics
Matches: 135, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 135 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (49 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAC
Found at i:74989935 original size:23 final size:23
Alignment explanation
Indices: 74989900--74989947 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
74989890 GATAAGGCCT
74989900 AATGGCCGATGTGATGAATGTGA
1 AATGGCCGATGTGATGAATGTGA
* *
74989923 AATGGCTGGTGTGATGAATGTGA
1 AATGGCCGATGTGATGAATGTGA
74989946 AA
1 AA
74989948 GTGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.31, C:0.06, G:0.35, T:0.27
Consensus pattern (23 bp):
AATGGCCGATGTGATGAATGTGA
Found at i:74989983 original size:47 final size:47
Alignment explanation
Indices: 74989932--74990059 Score: 211
Period size: 47 Copynumber: 2.7 Consensus size: 47
74989922 AAATGGCTGG
74989932 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
* *
74989979 TGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
* * *
74990026 CGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAG
74990060 TCCCGAAGGG
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.32, T:0.28
Consensus pattern (47 bp):
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
Found at i:74989984 original size:119 final size:118
Alignment explanation
Indices: 74989802--74990041 Score: 356
Period size: 119 Copynumber: 2.0 Consensus size: 118
74989792 GATAAGGCCT
* *
74989802 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
74989867 AATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
65 AATGTGAAAGTGTATAT--ATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* *
74989923 AATGGCTGGTGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 AATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * *
74989987 ATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGA
66 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
74990040 AA
1 AA
74990042 GTGTATAAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
117 33 0.30
119 50 0.46
121 26 0.24
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.28
Consensus pattern (118 bp):
AATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
Found at i:74989988 original size:70 final size:71
Alignment explanation
Indices: 74989851--74989994 Score: 236
Period size: 70 Copynumber: 2.0 Consensus size: 71
74989841 GATAAGGCCT
* *
74989851 AATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATA-ATGTGATAAGGCCGAATGGCCAATGTGATG
74989916 AATGTGA
65 AATGTGA
* *
74989923 AATGGCTGGTGTGATGAATGTGAAAGTGTATAT-ATGTGATAAGGCCGAATGGCCAATGTGATGA
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGCCGAATGGCCAATGTGATGA
74989987 ATGTGA
66 ATGTGA
74989993 AA
1 AA
74989995 GTGTATATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
70 37 0.54
72 31 0.46
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (71 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGCCGAATGGCCAATGTGATGA
ATGTGA
Found at i:74991922 original size:25 final size:25
Alignment explanation
Indices: 74991868--74991922 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
74991858 TGTGTAATAA
*
74991868 CGAATGAATAAGAGCACTATGTGTG
1 CGAATGAATAAGAGCACTATGTGTC
* * *
74991893 TGAATG-ATTAGAGGCACTGTGTGTC
1 CGAATGAATAAGA-GCACTATGTGTC
74991918 CGAAT
1 CGAAT
74991923 TCCTTTAACC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (25 bp):
CGAATGAATAAGAGCACTATGTGTC
Found at i:74997608 original size:49 final size:47
Alignment explanation
Indices: 74997491--74997855 Score: 502
Period size: 49 Copynumber: 7.7 Consensus size: 47
74997481 GATTTTACGC
* *
74997491 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
*
74997538 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
*
74997585 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCAATGT
*
74997634 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCA-ATGT
*
74997683 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCA-ATGT
*
74997732 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
* * * * *
74997779 GATGAATGTGAAGGTCTATATATGTGAT-GGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
* * *
74997825 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
74997856 TCCCGAAGGG
Statistics
Matches: 295, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
46 39 0.13
47 111 0.38
48 9 0.03
49 136 0.46
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
Found at i:74999847 original size:42 final size:41
Alignment explanation
Indices: 74999783--74999994 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 41
74999773 CTCGACGATG
* * *
74999783 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
* * * * *
74999825 ATCCGGGTTAAGTCCCGTAGAGCATTCGTGCTGGTGT-TAC
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
*
74999865 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* *
74999905 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* * ** * * *
74999945 ATCCGGACCAGGTTCCGAAGAGCAGTCATGCTGGTGATATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
*
74999987 ATTCGGGC
1 ATCCGGGC
74999995 CTTCGAGCCT
Statistics
Matches: 147, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 103 0.70
41 1 0.01
42 43 0.29
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
Found at i:75000025 original size:43 final size:43
Alignment explanation
Indices: 74999977--75000154 Score: 311
Period size: 43 Copynumber: 4.1 Consensus size: 43
74999967 CAGTCATGCT
74999977 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
75000020 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
75000063 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
* * * **
75000106 GGTGATATGTATTCGGGTCTTCGTGCTTAGCAGGCTTAATGCC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
75000149 GGTGAT
1 GGTGAT
75000155 TCGAGCAAGG
Statistics
Matches: 130, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 130 1.00
ACGTcount: A:0.15, C:0.21, G:0.33, T:0.31
Consensus pattern (43 bp):
GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
Found at i:75004006 original size:46 final size:46
Alignment explanation
Indices: 75003895--75004236 Score: 260
Period size: 46 Copynumber: 7.7 Consensus size: 46
75003885 GATTTTACGC
* *
75003895 GATGAATGTGAA-TGTG--TATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAA-GTGAAGTGTGTATATATGTGATAA-GCCGAATGGCCAATGT
75003940 GATGAATGTGAAG-GTGTATATATGTGATAAGCCGAATGGCCAATGT
1 GATGAA-GTGAAGTGTGTATATATGTGATAAGCCGAATGGCCAATGT
* *
75003986 GATGAA-TGAA-TGTGTATATA--TGATAAG--G-CT---AAATGT
1 GATGAAGTGAAGTGTGTATATATGTGATAAGCCGAATGGCCAATGT
* * *
75004022 GA--ATGTGAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAAGTG-AAGTGTGTATATATGTGATAA-GCCGAATGGCCAATGT
* * *
75004067 GATGAATGTGAAAGTGTATATATATGTGA-AGGCCTAATGG-CAGATGT
1 GATGAA-GTG-AAGTGTGTATATATGTGATAAGCCGAATGGCCA-ATGT
* *
75004114 GATGAATGTGAAG-GTGTATATATGTGATAAGGCGAATAGCCAATGT
1 GATGAA-GTGAAGTGTGTATATATGTGATAAGCCGAATGGCCAATGT
** * *
75004160 GATGAATGTGAAG-GTGTATATATGTGATGGGCCGAGTGGCCAACGT
1 GATGAA-GTGAAGTGTGTATATATGTGATAAGCCGAATGGCCAATGT
* * *
75004206 GATGGATGTGAA-AGTGTATAAATGTGATAAG
1 GAT-GAAGTGAAGTGTGTATATATGTGATAAG
75004237 TCCCGAAGGG
Statistics
Matches: 245, Mismatches: 27, Indels: 49
0.76 0.08 0.15
Matches are distributed among these distances:
34 1 0.00
35 2 0.01
36 15 0.06
37 3 0.01
38 6 0.02
39 2 0.01
40 1 0.00
42 8 0.03
44 13 0.05
45 34 0.14
46 98 0.40
47 40 0.16
48 11 0.04
49 11 0.04
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.30
Consensus pattern (46 bp):
GATGAAGTGAAGTGTGTATATATGTGATAAGCCGAATGGCCAATGT
Found at i:75004027 original size:42 final size:42
Alignment explanation
Indices: 75003895--75004183 Score: 207
Period size: 47 Copynumber: 6.5 Consensus size: 42
75003885 GATTTTACGC
* *
75003895 GATGAATGTGAATGTGTATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAA-GTGAATGTGTATATATGATAAGG-CTAATGG-CAATGT
* * *
75003940 GATGAATGTGAAGGTGTATATATGTGATAAGCCGAATGGCCAATGT
1 GATGAA-GTGAATGTGTATATA--TGATAAGGCTAATGG-CAATGT
75003986 GATGAA-TGAATGTGTATATATGATAAGGCTAAATGTG-AATGT
1 GATGAAGTGAATGTGTATATATGATAAGGCT-AATG-GCAATGT
* * *
75004028 GA--AAGTG--T-TATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAAGTGAATGTGTATATATGATAAGG-CTAATGG-CAATGT
*
75004067 GATGAATGTGAAAGTGTATATAT-ATGTGAAGGCCTAATGGCAGATGT
1 GATGAA-GTGAATGTGTATATATGA--T-AAGG-CTAATGGCA-ATGT
* * *
75004114 GATGAATGTGAAGGTGTATATATGTGATAAGGCGAATAGCCAATGT
1 GATGAA-GTGAATGTGTATATA--TGATAAGGCTAAT-GGCAATGT
*
75004160 GATGAATGTGAAGGTGTATATATG
1 GATGAA-GTGAATGTGTATATATG
75004184 TGATGGGCCG
Statistics
Matches: 204, Mismatches: 18, Indels: 45
0.76 0.07 0.17
Matches are distributed among these distances:
37 1 0.00
38 18 0.09
39 9 0.04
40 2 0.01
41 4 0.02
42 18 0.09
43 4 0.02
44 17 0.08
45 27 0.13
46 50 0.25
47 51 0.25
48 1 0.00
49 1 0.00
50 1 0.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (42 bp):
GATGAAGTGAATGTGTATATATGATAAGGCTAATGGCAATGT
Found at i:75004102 original size:47 final size:47
Alignment explanation
Indices: 75004021--75004232 Score: 224
Period size: 47 Copynumber: 4.6 Consensus size: 47
75004011 AGGCTAAATG
* *
75004021 TGAATGTGAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATATGTG--AAGGCCGAATGGCCAATGTGA
*
75004069 TGAATGTGAAAGTGTATATATATGTGAAGGCCTAATGG-CAGATGTGA
1 TGAATGTGAAAGTGTATATATATGTGAAGGCCGAATGGCCA-ATGTGA
* * *
75004116 TGAATGTGAAGGTGTATATATGTGAT-AAGG-CGAATAGCCAATGTGA
1 TGAATGTGAAAGTGTATATATATG-TGAAGGCCGAATGGCCAATGTGA
* * * *
75004162 TGAATGTG-AAG-GTGTATATATGTGATGGGCCGAGTGGCCAACGTGA
1 TGAATGTGAAAGTGTATATATATGTGA-AGGCCGAATGGCCAATGTGA
*
75004208 TGGATGTGAAAGTGTATA-A-ATGTGA
1 TGAATGTGAAAGTGTATATATATGTGA
75004233 TAAGTCCCGA
Statistics
Matches: 141, Mismatches: 14, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 10 0.07
45 4 0.03
46 46 0.33
47 50 0.35
48 20 0.14
49 10 0.07
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (47 bp):
TGAATGTGAAAGTGTATATATATGTGAAGGCCGAATGGCCAATGTGA
Found at i:75004138 original size:25 final size:25
Alignment explanation
Indices: 75004110--75004188 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
75004100 CTAATGGCAG
75004110 ATGTGATGAATGTGAAGGTGTATAT
1 ATGTGATGAATGTGAAGGTGTATAT
* * **
75004135 ATGTGAT-AAGGCGAA--TAG-CCA-
1 ATGTGATGAATGTGAAGGT-GTATAT
75004156 ATGTGATGAATGTGAAGGTGTATAT
1 ATGTGATGAATGTGAAGGTGTATAT
75004181 ATGTGATG
1 ATGTGATG
75004189 GGCCGAGTGG
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
21 7 0.17
22 8 0.20
23 2 0.05
24 8 0.20
25 15 0.38
ACGTcount: A:0.33, C:0.04, G:0.32, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAGGTGTATAT
Found at i:75005831 original size:40 final size:40
Alignment explanation
Indices: 75005735--75005909 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
75005725 CGAATGGTAT
* * *
75005735 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
*
75005775 CCGGG-TCAA-T-CCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
75005813 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
75005853 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
75005892 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
75005910 ACAATCGAGC
Statistics
Matches: 119, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
38 23 0.19
39 43 0.36
40 53 0.45
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:75005905 original size:79 final size:78
Alignment explanation
Indices: 75005735--75005909 Score: 230
Period size: 79 Copynumber: 2.2 Consensus size: 78
75005725 CGAATGGTAT
75005735 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGGTCAATCCGAAGGCATTTGTG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGGTCAATCCGAAGGCATTTGTG
*
75005800 CGAGTTACCAAAA
66 CGAATTACCAAAA
* * *
75005813 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAAGTCCCGAAGGCA-T
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGGTC-AA-T-CCGAAGGCATT
* *
75005875 TGTGCGAATTACTATAA
62 TGTGCGAATTACCAAAA
*
75005892 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
75005910 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
77 1 0.01
78 36 0.42
79 39 0.46
80 9 0.11
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGGTCAATCCGAAGGCATTTGTG
CGAATTACCAAAA
Found at i:75005934 original size:79 final size:80
Alignment explanation
Indices: 75005768--75005935 Score: 191
Period size: 79 Copynumber: 2.1 Consensus size: 80
75005758 GTGCTAAGTG
* *
75005768 ACTAAATCCGGG-TCAA-T-CCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAA
1 ACTAAATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAA
* * * * *
75005830 GGCATTTGTGCGAGTT
65 GACAATCGAGCGAGTC
* * *
75005846 ACTAAATCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAATTACTATAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
75005910 ACAATCGAGCGAGTC
66 ACAATCGAGCGAGTC
* *
75005925 GCTATATCCGG
1 ACTAAATCCGG
75005936 TTAAATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 14 0.19
79 52 0.69
80 9 0.12
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:75013852 original size:41 final size:40
Alignment explanation
Indices: 75013807--75014010 Score: 175
Period size: 40 Copynumber: 5.1 Consensus size: 40
75013797 GCTAAGTCCT
* * *
75013807 GAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCC
1 GAAGGCATTTGTGC-GAGTTACTAAATCCGGGTCAATTCCC
* * * *
75013848 GAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTCAATTCCC
75013888 GAAGGCATTTGTGCGAGTTACTAAATCCGGG-CTAATTCCC
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTC-AATTCCC
* * *
75013928 GAA-GCAATTGTGCGAATTACTATAA-CCGGG-CTATGTCCC
1 GAAGGCATTTGTGCGAGTTACTA-AATCCGGGTCAAT-TCCC
* * * * * * * *
75013967 GAAGACAATCGAGCGAGTCACTATATCCGGTTAAATT-CC
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTCAATTCCC
75014006 GAAGG
1 GAAGG
75014011 TACGTGATTC
Statistics
Matches: 133, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 37 0.28
40 79 0.59
41 15 0.11
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTAAATCCGGGTCAATTCCC
Found at i:75013889 original size:40 final size:40
Alignment explanation
Indices: 75013793--75013970 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
75013783 CGAATGGTAT
* * * * *
75013793 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
75013834 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
75013874 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
75013914 CCGGGCTAATTCCCGAA-GCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
75013953 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
75013971 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.28
40 59 0.51
41 24 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:75013969 original size:79 final size:81
Alignment explanation
Indices: 75013793--75013970 Score: 236
Period size: 79 Copynumber: 2.2 Consensus size: 81
75013783 CGAATGGTAT
* * *
75013793 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
*
75013858 GTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAA
* * *
75013874 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAA-GCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
75013936 TGTGCGAATTACTATAA
65 TGTGCGAATTACCAAAA
*
75013953 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
75013971 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.41
80 25 0.29
81 25 0.29
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAA
Found at i:75013983 original size:79 final size:80
Alignment explanation
Indices: 75013827--75014010 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
75013817 GTGCTAAGTG
* * *
75013827 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
* * * * *
75013892 GCATTTGTGCGAGTT
66 ACAATCGAGCGAGTC
* * *
75013907 ACTAAATCCGGG-CTAATTCCCGAA-GCAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAA
75013970 GACAATCGAGCGAGTC
65 GACAATCGAGCGAGTC
* * *
75013986 ACTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
75014011 TACGTGATTC
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
78 5 0.06
79 60 0.69
80 22 0.25
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:75021144 original size:48 final size:52
Alignment explanation
Indices: 75021083--75021211 Score: 151
Period size: 54 Copynumber: 2.5 Consensus size: 52
75021073 TTAGTTTACC
* *
75021083 AAATTACTAAAATACCCCTGTAGGGTA-T-T-GAAATACCCTTGTAGGGTA-
1 AAATTACTGAAATACCCCTGTAGGGTATTATCGAAATACCCTTGTAGGATAG
* *
75021131 AAATTACTGAAATACCCCTATAGGGTAGAATTATCGAAATACCTTTGTAGGATAG
1 AAATTACTGAAATACCCCTGTAGGGT---ATTATCGAAATACCCTTGTAGGATAG
*
75021186 AAA-TACCGAAATACCCCTGTAGGGTA
1 AAATTACTGAAATACCCCTGTAGGGTA
75021212 GAATTACAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
48 24 0.35
51 2 0.03
52 1 0.01
53 1 0.01
54 37 0.54
55 3 0.04
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (52 bp):
AAATTACTGAAATACCCCTGTAGGGTATTATCGAAATACCCTTGTAGGATAG
Found at i:75021154 original size:27 final size:27
Alignment explanation
Indices: 75021111--75021245 Score: 139
Period size: 27 Copynumber: 5.0 Consensus size: 27
75021101 TGTAGGGTAT
75021111 TGAAATACCCTTGTAGGGTAAAATTAC
1 TGAAATACCCTTGTAGGGTAAAATTAC
* * *
75021138 TGAAATACCCCTATAGGGTAGAATTA-
1 TGAAATACCCTTGTAGGGTAAAATTAC
* *
75021164 TCGAAATACCTTTGTAGGATAGAAA-TAC
1 T-GAAATACCCTTGTAGGGTA-AAATTAC
* * *
75021192 CGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCTTGTAGGGTAAAATTAC
* * *
75021219 AGAGATACCCTTGTGGGGTAAAATTAC
1 TGAAATACCCTTGTAGGGTAAAATTAC
75021246 CATTTTGCCC
Statistics
Matches: 86, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
26 3 0.03
27 81 0.94
28 2 0.02
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (27 bp):
TGAAATACCCTTGTAGGGTAAAATTAC
Found at i:75021197 original size:54 final size:54
Alignment explanation
Indices: 75021112--75021246 Score: 175
Period size: 54 Copynumber: 2.5 Consensus size: 54
75021102 GTAGGGTATT
* *
75021112 GAAATACCCTTGTAGGGTAAAATTACTGAAATACCCCTATAGGGTAGAATTATC
1 GAAATACCCTTGTAGGATAAAATTACCGAAATACCCCTATAGGGTAGAATTATC
* *
75021166 GAAATACCTTTGTAGGATAGAAA-TACCGAAATACCCCTGTAGGGTAGAATTA-C
1 GAAATACCCTTGTAGGATA-AAATTACCGAAATACCCCTATAGGGTAGAATTATC
* * *
75021219 AGAGATACCCTTGTGGGGTAAAATTACC
1 -GAAATACCCTTGTAGGATAAAATTACC
75021247 ATTTTGCCCC
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
53 4 0.06
54 63 0.90
55 3 0.04
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (54 bp):
GAAATACCCTTGTAGGATAAAATTACCGAAATACCCCTATAGGGTAGAATTATC
Found at i:75021486 original size:28 final size:27
Alignment explanation
Indices: 75021449--75021557 Score: 139
Period size: 27 Copynumber: 4.0 Consensus size: 27
75021439 GGAGGAAGTG
75021449 TTCTGGTGGCTATGCCACAGATATCTGT
1 TTCTGGTGGCTATGCCACA-ATATCTGT
*
75021477 TTCTGGTGGCTATGCCATAAATATCTG-
1 TTCTGGTGGCTATGCCA-CAATATCTGT
*
75021504 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTATGCCACAATATCTGT
* * * *
75021531 ATCTGGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTATGCCACAATATCTGT
75021558 GCTGGTAGCC
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 8 0.11
27 40 0.55
28 24 0.33
29 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
TTCTGGTGGCTATGCCACAATATCTGT
Found at i:75021695 original size:12 final size:12
Alignment explanation
Indices: 75021680--75021748 Score: 61
Period size: 12 Copynumber: 5.7 Consensus size: 12
75021670 TTGCATTCAC
75021680 ATTCTGATTCTA
1 ATTCTGATTCTA
*
75021692 ATTCTG-TCACCTA
1 ATTCTGAT--TCTA
*
75021705 ATTCTGATTCTG
1 ATTCTGATTCTA
*
75021717 ATTCTGATTCTC
1 ATTCTGATTCTA
75021729 A-TCTTGATTCTA
1 ATTC-TGATTCTA
*
75021741 GTTCTGAT
1 ATTCTGAT
75021749 AATGTTTCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
11 3 0.07
12 31 0.67
13 11 0.24
14 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (12 bp):
ATTCTGATTCTA
Found at i:75023803 original size:42 final size:43
Alignment explanation
Indices: 75023694--75023850 Score: 122
Period size: 43 Copynumber: 3.7 Consensus size: 43
75023684 AGCTCATATA
* *
75023694 ATGCCAATGTCCCT-GACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGT-CCTAGACATGGTCTTACATGAAATCAAATATCG
* * * * *
75023737 ATGCCACTGTCCCAAACAGGGTCTTACATGAAATTAAATAT-G
1 ATGCCAATGTCCTAGACATGGTCTTACATGAAATCAAATATCG
** * * *
75023779 ATGGTAATGTCCTAGACATGGTCTTACACGTAAATCATAA-GTCA
1 ATGCCAATGTCCTAGACATGGTCTTACATG-AAATCA-AATATCG
* * **
75023823 ATGCCAACGTCCCAGATGTGGTCTTACA
1 ATGCCAATGTCCTAGACATGGTCTTACA
75023851 CAAAAACACA
Statistics
Matches: 87, Mismatches: 23, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
42 26 0.30
43 37 0.43
44 24 0.28
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACATGGTCTTACATGAAATCAAATATCG
Found at i:75026147 original size:12 final size:12
Alignment explanation
Indices: 75026130--75026155 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75026120 AAAGTTATAT
75026130 GGCCTAGCACAC
1 GGCCTAGCACAC
75026142 GGCCTAGCACAC
1 GGCCTAGCACAC
75026154 GG
1 GG
75026156 GCGTGTGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:75033164 original size:29 final size:28
Alignment explanation
Indices: 75033077--75033300 Score: 145
Period size: 29 Copynumber: 8.0 Consensus size: 28
75033067 TATAAGTGAT
* * *
75033077 CCTTTGTGGCTATCT-T-TGAATGGAAA
1 CCTTTGTGGCTATCTCTGTTAAAGGAAG
* * *
75033103 CCTTTGTAGCAATCTCTG--AAAGGTAG
1 CCTTTGTGGCTATCTCTGTTAAAGGAAG
* *
75033129 CCGTTGTGGCAATCTCTGTTATAAGGAAG
1 CCTTTGTGGCTATCTCTGTTA-AAGGAAG
* *
75033158 CCTTTGTGG-TGATCTCTATTAAGAGGATG
1 CCTTTGTGGCT-ATCTCTGTTAA-AGGAAG
* * *
75033187 CCTTTATGGTTATCT-TAGTTAAAAGAATG
1 CCTTTGTGGCTATCTCT-GTTAAAGGAA-G
* * *
75033216 TCTTTGTGGCGATCTCTGTTAAAGGGATG
1 CCTTTGTGGCTATCTCTGTTAAA-GGAAG
* * *
75033245 CCTTTGTCGCTATCTCAGTTAAATGAATG
1 CCTTTGTGGCTATCTCTGTTAAAGGAA-G
* * *
75033274 CTTTTGTAGCTATCTCAGTTAAAGGAA
1 CCTTTGTGGCTATCTCTGTTAAAGGAA
75033301 TGTCTTGCGT
Statistics
Matches: 154, Mismatches: 31, Indels: 23
0.74 0.15 0.11
Matches are distributed among these distances:
26 34 0.22
27 1 0.01
28 8 0.05
29 107 0.69
30 4 0.03
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.37
Consensus pattern (28 bp):
CCTTTGTGGCTATCTCTGTTAAAGGAAG
Found at i:75036834 original size:48 final size:48
Alignment explanation
Indices: 75036761--75037050 Score: 481
Period size: 48 Copynumber: 6.0 Consensus size: 48
75036751 CAAGACAAAT
* *
75036761 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
75036809 ATATGTACATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
75036857 ATATATATATGTGGTGAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
75036905 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
75036953 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
75037001 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
75037049 AT
1 AT
75037051 GTGTGTATAT
Statistics
Matches: 225, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 225 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:75037289 original size:37 final size:37
Alignment explanation
Indices: 75037194--75037292 Score: 164
Period size: 36 Copynumber: 2.7 Consensus size: 37
75037184 AATATATTCG
*
75037194 GGGTAAGACCCGATGACTGCGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
75037231 GGGTAAGA-CCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
75037267 GGGTAAGACCCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
75037293 GGACTATTCG
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 34 0.59
37 24 0.41
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.24
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:75043204 original size:70 final size:70
Alignment explanation
Indices: 75043099--75043232 Score: 214
Period size: 70 Copynumber: 1.9 Consensus size: 70
75043089 TATCCTTACA
*
75043099 TTTCAAATCCATATACGACTTCTGTCGATCTGAAGCTACCTTCAAACTATCACGAATTACTTTCC
1 TTTCAAATCCATATACGACTTCTGTCGACCTGAAGCTACCTTCAAACTATCACGAATTACTTTCC
75043164 TTATG
66 TTATG
* * * * *
75043169 TTTCAAATCCATATACGATTTTTGTTGACCTGAAGCTGCTTTCAAACTATCACGAATTACTTTC
1 TTTCAAATCCATATACGACTTCTGTCGACCTGAAGCTACCTTCAAACTATCACGAATTACTTTC
75043233 ACTTTCTCTT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 58 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.37
Consensus pattern (70 bp):
TTTCAAATCCATATACGACTTCTGTCGACCTGAAGCTACCTTCAAACTATCACGAATTACTTTCC
TTATG
Found at i:75045663 original size:17 final size:17
Alignment explanation
Indices: 75045641--75045725 Score: 64
Period size: 17 Copynumber: 4.7 Consensus size: 17
75045631 TATATGTCAT
75045641 ACATAATAAATTTATCA
1 ACATAATAAATTTATCA
*
75045658 ACATAATTAATTTAT-A
1 ACATAATAAATTTATCA
* *
75045674 AGTCATACATACCAATATGTCA
1 A--CATA-ATA--AATTTATCA
*
75045696 TATATAATAAATTTATCA
1 -ACATAATAAATTTATCA
*
75045714 ACATAATTAATT
1 ACATAATAAATT
75045726 CATAAGTCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
16 2 0.04
17 24 0.46
18 11 0.21
19 2 0.04
20 3 0.06
21 8 0.15
22 1 0.02
23 1 0.02
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (17 bp):
ACATAATAAATTTATCA
Found at i:75045710 original size:56 final size:56
Alignment explanation
Indices: 75045632--75045747 Score: 214
Period size: 56 Copynumber: 2.1 Consensus size: 56
75045622 ACTATCACAT
*
75045632 ATATGTCATACATAATAAATTTATCAACATAATTAATTTATAAGTCATACATACCA
1 ATATGTCATACATAATAAATTTATCAACATAATTAATTCATAAGTCATACATACCA
*
75045688 ATATGTCATATATAATAAATTTATCAACATAATTAATTCATAAGTCATACATACCA
1 ATATGTCATACATAATAAATTTATCAACATAATTAATTCATAAGTCATACATACCA
75045744 ATAT
1 ATAT
75045748 TCGACTAATT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (56 bp):
ATATGTCATACATAATAAATTTATCAACATAATTAATTCATAAGTCATACATACCA
Found at i:75054489 original size:29 final size:29
Alignment explanation
Indices: 75054456--75054538 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
75054446 GTGTCGAGAT
75054456 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
75054485 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
75054514 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
75054539 AAATACGGCA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:75056802 original size:24 final size:24
Alignment explanation
Indices: 75056752--75056877 Score: 157
Period size: 24 Copynumber: 5.2 Consensus size: 24
75056742 GGCCTACCCT
*
75056752 CTTTTAATAACTGGGG-AAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
75056775 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
75056799 CTTTTAATAACTGAGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
** *
75056823 CTTTATCGTAATTGGGG-ATAAGCC
1 CTTT-TAATAACTGGGGCATAAGCC
* *
75056847 CTTTATCATAACGGGGGCATAAGCC
1 CTTT-TAATAACTGGGGCATAAGCC
75056872 CTTTTA
1 CTTTTA
75056878 CACTTTCTCC
Statistics
Matches: 90, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
23 16 0.18
24 55 0.61
25 19 0.21
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:75056951 original size:20 final size:20
Alignment explanation
Indices: 75056926--75056992 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
75056916 TTATGAATAC
75056926 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75056946 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75056966 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75056986 ACCATGT
1 ATCATGT
75056993 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75056957 original size:11 final size:11
Alignment explanation
Indices: 75056926--75056981 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
75056916 TTATGAATAC
75056926 ATCATGTGCAT
1 ATCATGTGCAT
*
75056937 ATCA--TACAT
1 ATCATGTGCAT
75056946 ATCATGTGCAT
1 ATCATGTGCAT
*
75056957 ATCA--TACAT
1 ATCATGTGCAT
*
75056966 GTCATGTGCAT
1 ATCATGTGCAT
75056977 ATCAT
1 ATCAT
75056982 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:75058690 original size:17 final size:19
Alignment explanation
Indices: 75058668--75058705 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
75058658 AAGGGAGAAT
75058668 AAAG-AAATG-GAAAAAAA
1 AAAGAAAATGAGAAAAAAA
75058685 AAAGAAAATGATGAAAAAAA
1 AAAGAAAATGA-GAAAAAAA
75058705 A
1 A
75058706 TGTGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 5 0.28
20 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAGAAAATGAGAAAAAAA
Found at i:75060045 original size:29 final size:29
Alignment explanation
Indices: 75060013--75060115 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
75060003 GTGACGAGAT
* *
75060013 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
75060042 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
75060071 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
75060100 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75060116 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Done.