Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 241 of 433
Found at i:75062348 original size:13 final size:13
Alignment explanation
Indices: 75062330--75062355 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75062320 ATATTATAAT
75062330 TATTTTATGTTAA
1 TATTTTATGTTAA
75062343 TATTTTATGTTAA
1 TATTTTATGTTAA
75062356 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:75063778 original size:40 final size:40
Alignment explanation
Indices: 75063730--75063974 Score: 368
Period size: 40 Copynumber: 6.2 Consensus size: 40
75063720 GGACTAAGAT
75063730 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
*
75063770 CCGAAGGCATCTGTGCTAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
75063810 CCGAAGGAATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
* * * *
75063850 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGCC
1 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
75063890 CCGAAGGCA-CTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
* * * *
75063929 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
75063968 CCGAAGG
1 CCGAAGG
75063975 TACTTGGGTT
Statistics
Matches: 188, Mismatches: 16, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 50 0.27
40 138 0.73
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:75066967 original size:30 final size:30
Alignment explanation
Indices: 75066933--75066989 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
75066923 TTTTTGAGCA
* * *
75066933 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGATCATTTTACCAAAGTC
75066963 TAGGGGCAAAATGATCATTTTACCAAA
1 TAGGGGCAAAATGATCATTTTACCAAA
75066990 AATGTGAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGATCATTTTACCAAAGTC
Found at i:75068302 original size:55 final size:55
Alignment explanation
Indices: 75068219--75068340 Score: 165
Period size: 55 Copynumber: 2.2 Consensus size: 55
75068209 GCACTTAAAA
* * ** ** *
75068219 TTTT-AAGTCATTGTTGTACATGGGCAGGCCACACGGGTGTGTGCCATGGTCGTG
1 TTTTAAAGTCAGTATTGTACATGGGCAGGCCACACAAGCATGTGCCATGGCCGTG
*
75068273 TTTTAAAGTCAGTATTGTACATGGGCAGGCCACATAAGCATGTGCCATGGCCGTG
1 TTTTAAAGTCAGTATTGTACATGGGCAGGCCACACAAGCATGTGCCATGGCCGTG
75068328 TTTTAAAGTCAGT
1 TTTTAAAGTCAGT
75068341 GTTGCACACG
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
54 4 0.07
55 55 0.93
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (55 bp):
TTTTAAAGTCAGTATTGTACATGGGCAGGCCACACAAGCATGTGCCATGGCCGTG
Found at i:75071096 original size:23 final size:23
Alignment explanation
Indices: 75071066--75071136 Score: 133
Period size: 23 Copynumber: 3.0 Consensus size: 23
75071056 TGGAAGAAGG
75071066 CTTCCTTGGCCTCTCTCCTCGAC
1 CTTCCTTGGCCTCTCTCCTCGAC
75071089 CTTCCTTGGCCTCTCTCCTCGAC
1 CTTCCTTGGCCTCTCTCCTCGAC
75071112 CTTCCTTGGCCTCTCCTCCTCGAC
1 CTTCCTTGGCCTCT-CTCCTCGAC
75071136 C
1 C
75071137 CTTAGATACG
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
23 37 0.79
24 10 0.21
ACGTcount: A:0.04, C:0.49, G:0.13, T:0.34
Consensus pattern (23 bp):
CTTCCTTGGCCTCTCTCCTCGAC
Found at i:75073142 original size:46 final size:46
Alignment explanation
Indices: 75073092--75073259 Score: 191
Period size: 46 Copynumber: 3.6 Consensus size: 46
75073082 TGGTTGAGCA
75073092 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75073138 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
75073183 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75073231 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
75073260 GCTTTGGGCG
Statistics
Matches: 102, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.55
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75073248 original size:93 final size:93
Alignment explanation
Indices: 75073089--75073260 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
75073079 GGATGGTTGA
* *
75073089 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
75073154 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
75073182 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75073247 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75073261 CTTTGGGCGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75080666 original size:46 final size:46
Alignment explanation
Indices: 75080616--75080791 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75080606 TGGTTGAGCA
75080616 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75080662 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75080707 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75080755 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75080792 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75080772 original size:93 final size:93
Alignment explanation
Indices: 75080613--75080784 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75080603 GGATGGTTGA
* *
75080613 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75080678 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75080706 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75080771 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75080785 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75087232 original size:46 final size:45
Alignment explanation
Indices: 75087182--75087349 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 45
75087172 TGGTTGAGCA
75087182 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
75087228 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
75087273 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
75087321 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
75087350 GCTTTGGGCG
Statistics
Matches: 102, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.55
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:75087338 original size:93 final size:93
Alignment explanation
Indices: 75087179--75087350 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
75087169 GGATGGTTGA
* *
75087179 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
75087244 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
75087272 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75087337 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75087351 CTTTGGGCGG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75091566 original size:53 final size:53
Alignment explanation
Indices: 75091508--75091611 Score: 190
Period size: 53 Copynumber: 2.0 Consensus size: 53
75091498 AAGAGAAAAC
*
75091508 TATTGAGAGTGAGAGAGGAATGTTGAGTGATGAAGGATGATGGAAAAGTGAAT
1 TATTGAGAGTGAGAGAGGAATGTTGAGTGATGAAGGATAATGGAAAAGTGAAT
*
75091561 TATTGAGAGTGAGAGAGGAATGTTGAGTGATGAGGGATAATGGAAAAGTGA
1 TATTGAGAGTGAGAGAGGAATGTTGAGTGATGAAGGATAATGGAAAAGTGA
75091612 GGAATGGCAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.24
Consensus pattern (53 bp):
TATTGAGAGTGAGAGAGGAATGTTGAGTGATGAAGGATAATGGAAAAGTGAAT
Found at i:75093506 original size:27 final size:28
Alignment explanation
Indices: 75093450--75093519 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
75093440 AAACTTGTAC
75093450 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
75093478 AGCACTAAGTGTGTGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
75093505 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75093520 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:75093530 original size:27 final size:27
Alignment explanation
Indices: 75093474--75093531 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
75093464 GAGTTTGATC
* * * *
75093474 ATATAGCACTAAGTGTGTGAGTTGATT
1 ATATAGCACTAAGTGTGGGAGCTCACT
75093501 ATATAGCACTAAGTGTGCGGA-CTCACT
1 ATATAGCACTAAGTGTG-GGAGCTCACT
75093528 ATAT
1 ATAT
75093532 GCTTTTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGGGAGCTCACT
Found at i:75097755 original size:6 final size:6
Alignment explanation
Indices: 75097734--75097791 Score: 82
Period size: 6 Copynumber: 9.7 Consensus size: 6
75097724 ATTAAATAAA
* *
75097734 TAAAAC TAACAT TAAAAT TAAAAT TAAAAAT TAAAAT TAAAAT T-AAAT
1 TAAAAT TAAAAT TAAAAT TAAAAT T-AAAAT TAAAAT TAAAAT TAAAAT
75097782 TAAAAT TAAA
1 TAAAAT TAAA
75097792 GACAAAGATA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
5 5 0.11
6 36 0.77
7 6 0.13
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (6 bp):
TAAAAT
Found at i:75097768 original size:19 final size:17
Alignment explanation
Indices: 75097734--75097791 Score: 80
Period size: 19 Copynumber: 3.2 Consensus size: 17
75097724 ATTAAATAAA
*
75097734 TAAAACTAACATTAAAAT
1 TAAAATTAA-ATTAAAAT
75097752 TAAAATTAAAAATTAAAAT
1 TAAAATT--AAATTAAAAT
75097771 TAAAATTAAATTAAAAT
1 TAAAATTAAATTAAAAT
75097788 TAAA
1 TAAA
75097792 GACAAAGATA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
17 14 0.38
18 6 0.16
19 15 0.41
20 2 0.05
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAATTAAATTAAAAT
Found at i:75097818 original size:6 final size:6
Alignment explanation
Indices: 75097731--75097822 Score: 51
Period size: 6 Copynumber: 15.3 Consensus size: 6
75097721 TTTATTAAAT
* * * * * * * *
75097731 AAATAA AACTAA CATTAA AATTAA AATTAA AAATTA AAATTA AAATTA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
* * * * *
75097779 AATTAA AATTAA AGACAA AGAT-A AAATAA GAAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA -AAATAA AAATAA AA
75097823 CTAAGAAAAG
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
5 4 0.06
6 61 0.86
7 6 0.08
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.24
Consensus pattern (6 bp):
AAATAA
Found at i:75097839 original size:35 final size:35
Alignment explanation
Indices: 75097759--75097840 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 35
75097749 AATTAAAATT
* * * *
75097759 AAAA-ATTAAAATTAAAATTAAATTAAAATTAAAG
1 AAAAGATTAAAATAAAAATAAAAATAAAACTAAAG
75097793 ACAAAGA-TAAAATAAGAAATAAAAATAAAACT-AAG
1 A-AAAGATTAAAATAA-AAATAAAAATAAAACTAAAG
75097828 AAAAGATTAAAAT
1 AAAAGATTAAAAT
75097841 GAATTCGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
34 6 0.15
35 20 0.50
36 14 0.35
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (35 bp):
AAAAGATTAAAATAAAAATAAAAATAAAACTAAAG
Found at i:75101298 original size:18 final size:18
Alignment explanation
Indices: 75101258--75101299 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
75101248 CCCATGATAC
75101258 AGCCCATGTGGGCCCATA
1 AGCCCATGTGGGCCCATA
* *
75101276 TGCCCGTGT-GGCCCATTA
1 AGCCCATGTGGGCCCA-TA
75101294 AGCCCA
1 AGCCCA
75101300 ATAGTGACCT
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.19, C:0.36, G:0.26, T:0.19
Consensus pattern (18 bp):
AGCCCATGTGGGCCCATA
Found at i:75107437 original size:15 final size:17
Alignment explanation
Indices: 75107417--75107449 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
75107407 GGAGTTTTGG
75107417 GTTTTC-TTATG-TTTT
1 GTTTTCTTTATGCTTTT
75107432 GTTTTCTTTATGCTTTT
1 GTTTTCTTTATGCTTTT
75107449 G
1 G
75107450 AGATGTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.06, C:0.09, G:0.15, T:0.70
Consensus pattern (17 bp):
GTTTTCTTTATGCTTTT
Found at i:75110034 original size:43 final size:43
Alignment explanation
Indices: 75109945--75110061 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 43
75109935 GATTATTTGA
*
75109945 AAGACCATGTCTGGGACATTGGCATC-ATATTGCGATTACGTGT
1 AAGACCATGTCTGGGACATTGGCATCGATATT-CGATTACGTAT
* * * *
75109988 AAGATCATGTTTGGGACATTGGCATCGTTATAT-GATTTCGTAT
1 AAGACCATGTCTGGGACATTGGCATCGATAT-TCGATTACGTAT
* * *
75110031 AAGACCATATCTAGGACATTGGAATCGATAT
1 AAGACCATGTCTGGGACATTGGCATCGATAT
75110062 GTTATAACAT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
43 57 0.93
44 3 0.05
45 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGGCATCGATATTCGATTACGTAT
Found at i:75112251 original size:37 final size:37
Alignment explanation
Indices: 75112192--75112337 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
75112182 AGCTCAGATG
* *
75112192 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
75112229 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
75112266 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
75112303 TAATCTCCACACGTAATCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
75112338 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:75112537 original size:48 final size:48
Alignment explanation
Indices: 75112479--75112767 Score: 497
Period size: 48 Copynumber: 6.0 Consensus size: 48
75112469 TATACACACG
* * * * *
75112479 TCTCCTACATATTTCACACTAGCCCTTCGGTTTTACCACATATACGTA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
75112527 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* *
75112575 TCTCATATATATTTCACATTAGCCATTCGGCTTTATCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
75112623 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
75112671 TCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
75112719 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
75112767 T
1 T
75112768 ATTTATCTTG
Statistics
Matches: 230, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 230 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
Found at i:75118047 original size:24 final size:22
Alignment explanation
Indices: 75118014--75118061 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
75118004 CTCTAGTGAT
75118014 GAATCTGAGCATGAAAAACATTTGA
1 GAATCTGAGC-T-AAAAACA-TTGA
75118039 GAAT-TGAGCTAAAAACATTGA
1 GAATCTGAGCTAAAAACATTGA
75118060 GA
1 GA
75118062 GATAAACAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.26
22 7 0.30
23 1 0.04
24 5 0.22
25 4 0.17
ACGTcount: A:0.46, C:0.10, G:0.21, T:0.23
Consensus pattern (22 bp):
GAATCTGAGCTAAAAACATTGA
Found at i:75121979 original size:35 final size:35
Alignment explanation
Indices: 75121933--75122003 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 35
75121923 GATCGGAGAG
75121933 ACTGAATAGAAAGTGAAAGTGATTCGC-GAAAGTCT
1 ACTGAATAGAAAGTGAAAGTGATTCGCAG-AAGTCT
75121968 ACTGAATAGAAAGTGAAAGTGATTCGCAGAAGTCT
1 ACTGAATAGAAAGTGAAAGTGATTCGCAGAAGTCT
75122003 A
1 A
75122004 AAAACAACGT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 34 0.97
36 1 0.03
ACGTcount: A:0.41, C:0.11, G:0.25, T:0.23
Consensus pattern (35 bp):
ACTGAATAGAAAGTGAAAGTGATTCGCAGAAGTCT
Found at i:75125199 original size:40 final size:40
Alignment explanation
Indices: 75125141--75125318 Score: 247
Period size: 40 Copynumber: 4.5 Consensus size: 40
75125131 CGGATGATAA
* * *
75125141 CCGGGCTAAGTCCCGAAGGCATTTGTGCTACTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
75125181 CCGGGCTAAG-CCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCC-GAAGGCATTTGTGCGAGTTACTATAT
*
75125221 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAATATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75125261 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
75125301 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75125319 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
39 20 0.16
40 103 0.81
41 4 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75126558 original size:59 final size:59
Alignment explanation
Indices: 75126466--75126589 Score: 248
Period size: 59 Copynumber: 2.1 Consensus size: 59
75126456 GTAGATGGAC
75126466 ATATGAGTCTAGTTTCAGGAAAAATTTACGGAACTGGTTTTCGAGTTTTGGAACTCGAG
1 ATATGAGTCTAGTTTCAGGAAAAATTTACGGAACTGGTTTTCGAGTTTTGGAACTCGAG
75126525 ATATGAGTCTAGTTTCAGGAAAAATTTACGGAACTGGTTTTCGAGTTTTGGAACTCGAG
1 ATATGAGTCTAGTTTCAGGAAAAATTTACGGAACTGGTTTTCGAGTTTTGGAACTCGAG
75126584 ATATGA
1 ATATGA
75126590 TTTTTAAGGT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (59 bp):
ATATGAGTCTAGTTTCAGGAAAAATTTACGGAACTGGTTTTCGAGTTTTGGAACTCGAG
Found at i:75133442 original size:40 final size:40
Alignment explanation
Indices: 75133338--75133512 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
75133328 CGGATGATAA
* *
75133338 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
75133377 CCGGGCT-TGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
75133416 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75133456 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
75133496 CC-GGCTAAAT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75133513 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
38 8 0.06
39 47 0.38
40 69 0.56
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75133502 original size:79 final size:78
Alignment explanation
Indices: 75133338--75133512 Score: 239
Period size: 79 Copynumber: 2.2 Consensus size: 78
75133328 CGGATGATAA
* * *
75133338 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTTGCCCCGAAGGCATTTGTG
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAGCCCCGAAGGCATTTGAG
75133403 CGAGTTACTATAT
66 CGAGTTACTATAT
* *
75133416 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCT-AGCCCCGAAGGCATTT
75133480 GAGCGAG-TAGCTATAT
63 GAGCGAGTTA-CTATAT
*
75133496 CC-GGCTAAATCCGAAGG
1 CCGGGCTAAGTCCGAAGG
75133513 TACTTGGTTT
Statistics
Matches: 87, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
78 20 0.23
79 39 0.45
80 28 0.32
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAGCCCCGAAGGCATTTGAG
CGAGTTACTATAT
Found at i:75139569 original size:39 final size:40
Alignment explanation
Indices: 75139392--75139569 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
75139382 CGGATGATAA
* * * *
75139392 CCGGGCCAAGTCCCGAAGGCATTTGTGCTACTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
75139432 CCGGGCTATGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75139472 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAATATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75139512 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
75139552 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75139570 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 17 0.14
40 106 0.85
41 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75141467 original size:43 final size:43
Alignment explanation
Indices: 75141416--75141588 Score: 147
Period size: 43 Copynumber: 4.1 Consensus size: 43
75141406 CATAGGATTT
75141416 TTGATATGTGTATT-CATGTAAGACCACGTCTGGGACATTGGCA
1 TTGATATGTG-ATTACATGTAAGACCACGTCTGGGACATTGGCA
* * * **
75141459 TTGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGATA
1 TTGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
* * ** * * *
75141502 TCG-TATTTGATT-TGTGTAAGACC-CTATCTGGGATAGTGGCA
1 TTGATATGTGATTACATGTAAGACCAC-GTCTGGGACATTGGCA
* * * * *
75141543 TCGAGATATGATTACATGTAAGACCATGTCTGGGACGTTGGCA
1 TTGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
75141586 TTG
1 TTG
75141589 TACGTTATGT
Statistics
Matches: 100, Mismatches: 25, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
41 23 0.23
42 18 0.18
43 59 0.59
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
TTGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
Found at i:75144586 original size:43 final size:41
Alignment explanation
Indices: 75144525--75144678 Score: 177
Period size: 43 Copynumber: 3.7 Consensus size: 41
75144515 TGTGATTATG
75144525 TGTAAGACCATGTCTGGGACATTGGCATCATAT-TGCAATTACA
1 TGTAAGACCATGTCTGGGACA-TGGCATCATATATG--ATTACA
*
75144568 TGTAAGACCATGTCTGGGAC-TGGCATCATTATATGATTTCA
1 TGTAAGACCATGTCTGGGACATGGCATCA-TATATGATTACA
* * *
75144609 TGTAAGACCATGTCTGAGACATTGGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTGGGACA-TGGCATC-ATATATGATTACA
* * *
75144652 TGTAAGGCCATATCTGGGATATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
75144679 TGTATGAGCT
Statistics
Matches: 97, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
41 32 0.33
42 9 0.09
43 55 0.57
44 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACATGGCATCATATATGATTACA
Found at i:75146692 original size:40 final size:39
Alignment explanation
Indices: 75146648--75146760 Score: 113
Period size: 39 Copynumber: 2.8 Consensus size: 39
75146638 AAGTGACTAT
*
75146648 ATCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAA
1 ATCCGGGCTA-GATCCGAAGGCATTCGTGCGAGTTAATAA
* * * *
75146688 ATCCGGGCTA-AGCCTGAAGGCATTTGTGCAAGTTACTAA
1 ATCCGGGCTAGATCC-GAAGGCATTCGTGCGAGTTAATAA
* *
75146727 ACCCGGGTTA-AGTCCCGAAGGCATTCGTGCGAGT
1 ATCCGGGCTAGA-T-CCGAAGGCATTCGTGCGAGT
75146761 CACTATAACC
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.05
39 30 0.50
40 25 0.42
41 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (39 bp):
ATCCGGGCTAGATCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:75146752 original size:79 final size:80
Alignment explanation
Indices: 75146609--75146793 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
75146599 TCGAATGATG
* * *
75146609 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
75146674 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* * **
75146689 TCCGGGCTAAG-CCTGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
75146751 TCGTGCGAGTCACTATAA
64 TCGTGCGAGTTAATA-AA
**
75146769 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
75146794 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 33 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:75146773 original size:40 final size:40
Alignment explanation
Indices: 75146610--75146801 Score: 167
Period size: 40 Copynumber: 4.8 Consensus size: 40
75146600 CGAATGATGT
* * * *
75146610 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
* * * * * *
75146650 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
75146690 CCGGGCTAAG-CCTGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
75146729 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
** *
75146769 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC
75146802 GTTATATCCG
Statistics
Matches: 123, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
39 32 0.26
40 82 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:75146824 original size:79 final size:79
Alignment explanation
Indices: 75146609--75146826 Score: 174
Period size: 79 Copynumber: 2.7 Consensus size: 79
75146599 TCGAATGATG
* * * * ** *
75146609 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
75146672 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * * *
75146689 TCCGGGCTAAGCCTGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
75146754 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
75146769 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
75146827 TACGTGATTC
Statistics
Matches: 111, Mismatches: 23, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
79 68 0.61
80 43 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:75153174 original size:45 final size:45
Alignment explanation
Indices: 75153110--75153602 Score: 706
Period size: 45 Copynumber: 11.0 Consensus size: 45
75153100 GGAAAGAACT
*
75153110 GGTGAAATGTTATTCGGGCCTTTGTGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
*
75153155 GGTGAAATGTTATTCGGGCCTTTGACCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * *
75153200 AGTGAAATATTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
75153245 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
*
75153290 GGTGAAATGTTATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * * *
75153335 AGTGAAATGTTATTCTGGCCTTTGAGCCTAGTAGGCTATAATGCT
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
75153380 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * *
75153425 GGTGAGATATTATTCGGGCCTTTGAGCCTAACAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * * *
75153470 GGTGAGATATTATTCAGGCCTTTGAGCCTAGTAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
** * ** *
75153515 AATGAGATACTATTCGGG-CTTTCGAGCCTAACAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCC
* * * *
75153560 AGTGAAATGATA-TCGGGCC-TCGAGCCTAGCAGGCGA-AATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
75153602 G
1 G
75153603 ATGATTTGAG
Statistics
Matches: 407, Mismatches: 39, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
42 6 0.01
43 13 0.03
44 10 0.02
45 378 0.93
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
Found at i:75161651 original size:28 final size:28
Alignment explanation
Indices: 75161605--75161673 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
75161595 TTTAAAACCC
*
75161605 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75161632 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75161660 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
75161674 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:75163497 original size:19 final size:18
Alignment explanation
Indices: 75163460--75163503 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
75163450 ATACATACAG
75163460 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
75163477 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
75163496 TACTAATT
1 TAATAATT
75163504 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:75165912 original size:28 final size:28
Alignment explanation
Indices: 75165866--75165934 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
75165856 TTTAAAACCC
*
75165866 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75165893 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75165921 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
75165935 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:75167761 original size:19 final size:18
Alignment explanation
Indices: 75167724--75167767 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
75167714 ATACATACAG
75167724 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
75167741 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
75167760 TACTAATT
1 TAATAATT
75167768 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:75177901 original size:96 final size:96
Alignment explanation
Indices: 75177694--75177940 Score: 263
Period size: 96 Copynumber: 2.6 Consensus size: 96
75177684 GTCCCGTCAG
* * * * * *
75177694 ACTCCAGATGTTGCCATAATCAAGTTATGGTCTTACACAATCTACACTTATG-TT-AACATCTTG
1 ACTCCATATATTGCCATAATTAAGCTATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTG
* * *
75177757 GCAAAATACCCTATGTTTATTGTCCTGATGG
66 GCAAAATACCATATGTTTATTCTCCTGATGA
* *
75177788 ACACCATA-AGCTGCCATAATTAAGCTATGGTCTTACACAATCTACCCTCATGTTTAAACATCTT
1 ACTCCATATA-TTGCCATAATTAAGCTATGGTCTTACACAATCTACCCTCATGTTTAAACATCTT
** * *
75177852 GGTGAACTACCATGTGTTTATTCTCCT-AGTGA
65 GGCAAAATACCATATGTTTATTCTCCTGA-TGA
* *
75177884 ACTCCATATATTGCCAT-ATTCGAGCTATGTTCTTACACAATCTAACCC-CATGTTTAA
1 ACTCCATATATTGCCATAATT-AAGCTATGGTCTTACACAATCT-ACCCTCATGTTTAA
75177941 CGTTTTGGTG
Statistics
Matches: 127, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
94 43 0.34
95 6 0.05
96 73 0.57
97 5 0.04
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.34
Consensus pattern (96 bp):
ACTCCATATATTGCCATAATTAAGCTATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTG
GCAAAATACCATATGTTTATTCTCCTGATGA
Found at i:75178004 original size:95 final size:96
Alignment explanation
Indices: 75177719--75178016 Score: 240
Period size: 96 Copynumber: 3.1 Consensus size: 96
75177709 ATAATCAAGT
* * ** * *
75177719 TATGGTCTTACACAATCTACACTTATG-TT-AACATCTTGGCAAAATACC-CTATGTTTATTGTC
1 TATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTGGTGAACTACCAC-ATGTTTATTATC
* * * *
75177781 CT-GATGGACACCATA-AGCTGCCATAATTA-AGC
65 CTAG-TGAACTCCATATA-TTGCCAT-AGTAGAGC
** *
75177813 TATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTGGTGAACTACCATGTGTTTATTCTCC
1 TATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTGGTGAACTACCACATGTTTATTATCC
* *
75177878 TAGTGAACTCCATATATTGCCATATTCGAGC
66 TAGTGAACTCCATATATTGCCATAGTAGAGC
* * * * * *
75177909 TATGTTCTTACACAATCTAACCC-CATGTTT-AACGTTTTGGTGGATTACCCCATGTTTATTAT-
1 TATGGTCTTACACAATCT-ACCCTCATGTTTAAACATCTTGGTGAACTACCACATGTTTATTATC
* *
75177971 CTCG-GTAGACTCCATATGCTT-CCATAGTAGAGC
65 CTAGTG-A-ACTCCATAT-ATTGCCATAGTAGAGC
75178004 TATGGTCTTACAC
1 TATGGTCTTACAC
75178017 CTTAAACCTC
Statistics
Matches: 168, Mismatches: 26, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
93 1 0.01
94 29 0.17
95 60 0.36
96 72 0.43
97 6 0.04
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (96 bp):
TATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTGGTGAACTACCACATGTTTATTATCC
TAGTGAACTCCATATATTGCCATAGTAGAGC
Found at i:75180923 original size:24 final size:24
Alignment explanation
Indices: 75180891--75180937 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
75180881 CACACGCCCA
*
75180891 TGTGCCAGGCCGTATGCTAGGCCG
1 TGTGCCAGGCCATATGCTAGGCCG
*
75180915 TGTGCCAGGCCATGTGCTAGGCC
1 TGTGCCAGGCCATATGCTAGGCC
75180938 ATGTAACAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.13, C:0.30, G:0.36, T:0.21
Consensus pattern (24 bp):
TGTGCCAGGCCATATGCTAGGCCG
Found at i:75180938 original size:12 final size:12
Alignment explanation
Indices: 75180888--75180941 Score: 63
Period size: 12 Copynumber: 4.5 Consensus size: 12
75180878 CCACACACGC
75180888 CCATGTGCCAGG
1 CCATGTGCCAGG
* * *
75180900 CCGTATGCTAGG
1 CCATGTGCCAGG
*
75180912 CCGTGTGCCAGG
1 CCATGTGCCAGG
*
75180924 CCATGTGCTAGG
1 CCATGTGCCAGG
75180936 CCATGT
1 CCATGT
75180942 AACAGCTTGA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (12 bp):
CCATGTGCCAGG
Found at i:75185766 original size:26 final size:26
Alignment explanation
Indices: 75185736--75185791 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
75185726 CATTTCGACC
* *
75185736 CACAGCTCGTGCGAGTAGGCCCATTT
1 CACAGCTCGTGCGAGCAGACCCATTT
* * *
75185762 CACAGCTTGTGTGAGCAGACTCATTT
1 CACAGCTCGTGCGAGCAGACCCATTT
75185788 CACA
1 CACA
75185792 ACTTGTGTGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (26 bp):
CACAGCTCGTGCGAGCAGACCCATTT
Found at i:75195483 original size:27 final size:28
Alignment explanation
Indices: 75195427--75195496 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
75195417 AAACTTGTAC
75195427 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
75195455 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
75195482 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75195497 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:75195507 original size:27 final size:27
Alignment explanation
Indices: 75195427--75195508 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
75195417 AAACTTGTAC
* *
75195427 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
75195455 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
75195482 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
75195509 GCTTTAGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:75203477 original size:27 final size:28
Alignment explanation
Indices: 75203421--75203490 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
75203411 AAACTTGTAC
75203421 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
75203449 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
75203476 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75203491 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:75203501 original size:27 final size:27
Alignment explanation
Indices: 75203421--75203502 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
75203411 AAACTTGTAC
* *
75203421 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
75203449 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
75203476 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
75203503 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:75204855 original size:80 final size:80
Alignment explanation
Indices: 75204708--75204912 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
75204698 ATTGAATGAT
* * ** * * *
75204708 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATA-CCGGGTTAAGACCCGAAGGCCAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCAT
*
75204772 TGTGCTAGT-GACCAC
66 TGTGCAAGTCGACC-C
* * *
75204787 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGG-CAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCA-
** *
75204851 TTGTGCAAGTCGTTCT
65 TTGTGCAAGTCGACCC
* *
75204867 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
75204913 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 35 0.33
80 69 0.65
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCAT
TGTGCAAGTCGACCC
Found at i:75204910 original size:40 final size:40
Alignment explanation
Indices: 75204706--75204912 Score: 188
Period size: 40 Copynumber: 5.2 Consensus size: 40
75204696 CAATTGAATG
* * ** **
75204706 ATATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GTGGTT
* ***
75204746 ATA-CCGGGTTAAGACCCGAAGGCCATT-GTGC-TAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAT-GTGGTT
* * *
75204785 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
* * * * *
75204825 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
*
75204865 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
75204905 ATATCCGG
1 ATATCCGG
75204913 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
39 30 0.22
40 108 0.78
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
Found at i:75211745 original size:40 final size:40
Alignment explanation
Indices: 75211701--75211826 Score: 189
Period size: 40 Copynumber: 3.1 Consensus size: 40
75211691 TAGTGACCAC
* *
75211701 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
* * *
75211741 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
* *
75211781 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
75211821 ATCCGG
1 ATCCGG
75211827 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAT
Found at i:75211770 original size:80 final size:80
Alignment explanation
Indices: 75211663--75211826 Score: 206
Period size: 80 Copynumber: 2.0 Consensus size: 80
75211653 GTAATTATAC
* * *
75211663 CCGGGTTAAGACCTGAAGGCCATTGTGCTAGT-GACCACATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCCATTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCATTC
*
75211727 GTGCAAGTTGTTAAAT
65 GTGCAAGTGGTTAAAT
* ** *
75211743 CCGGGCTAATACCCGAAGG-CATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCCA-TTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATTC
* *
75211807 GTGCATGTGGTTATAT
65 GTGCAAGTGGTTAAAT
75211823 CCGG
1 CCGG
75211827 TTGTATTCCG
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
79 2 0.03
80 68 0.94
81 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCCATTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTGGTTAAAT
Found at i:75223294 original size:40 final size:40
Alignment explanation
Indices: 75223234--75223417 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
75223224 TATTCGAATG
* *
75223234 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
75223274 ATATCCGGACTGAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* ** *
75223314 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
75223354 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
75223394 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
75223418 CTTGTGCGAG
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
40 119 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:75232622 original size:40 final size:40
Alignment explanation
Indices: 75232567--75232776 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75232557 AACATTGGAA
75232567 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75232607 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75232647 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75232687 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75232726 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75232767 CTATATCCGG
1 ATATATCCGG
75232777 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75240686 original size:40 final size:40
Alignment explanation
Indices: 75240631--75240840 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
75240621 AACATTGGAA
75240631 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75240671 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
75240711 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
75240751 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
75240790 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
75240831 CTATATCCGG
1 ATATATCCGG
75240841 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:75242387 original size:27 final size:27
Alignment explanation
Indices: 75242365--75242516 Score: 225
Period size: 27 Copynumber: 5.6 Consensus size: 27
75242355 TTAGTTTACC
75242365 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
75242392 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
75242419 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
75242446 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
75242473 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
**
75242500 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
75242517 TCGACCTGTG
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
26 1 0.01
27 114 0.99
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:75242504 original size:81 final size:81
Alignment explanation
Indices: 75242365--75242589 Score: 263
Period size: 81 Copynumber: 2.8 Consensus size: 81
75242355 TTAGTTTACC
* *
75242365 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAA
* ***
75242430 ATACCCTTGGTTTGTA
66 ATACCCTCGACCTGTA
* **
75242446 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAA
*
75242511 ATACCCTCGACCTGTG
66 ATACCCTCGACCTGTA
** * * * * * **
75242527 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTAATTTACAAAATTACCA
1 AAATTATCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCA
75242590 TTTTACCCCC
Statistics
Matches: 121, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
80 5 0.04
81 116 0.96
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAA
ATACCCTCGACCTGTA
Found at i:75242569 original size:27 final size:26
Alignment explanation
Indices: 75242365--75242625 Score: 198
Period size: 27 Copynumber: 9.7 Consensus size: 26
75242355 TTAGTTTACC
*
75242365 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
75242392 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
75242419 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
* *
75242446 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
75242473 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
** ** *
75242500 AAATTACTGAAATACCCTCGACCTGTG
1 AAATTACCAAAATACCC-CGATTTGTA
*** *
75242527 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
* ** **
75242554 AAATTACCAAAGTACCCTTAATTTACA
1 AAATTACCAAAATACCC-CGATTTGTA
*** **
75242581 AAATTACCATTTTACCCCCGATTTACA
1 AAATTACCAAAATA-CCCCGATTTGTA
*
75242608 AAATTACCGAAATACCCC
1 AAATTACCAAAATACCCC
75242626 TGTAGGGTAG
Statistics
Matches: 193, Mismatches: 35, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.02
27 184 0.95
28 5 0.03
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:75242639 original size:27 final size:27
Alignment explanation
Indices: 75242609--75242963 Score: 493
Period size: 27 Copynumber: 13.3 Consensus size: 27
75242599 CGATTTACAA
75242609 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75242636 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75242663 AATTATCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75242690 AATTACCGAAATACCCCTGTAGGATA-
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75242716 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
75242743 AATTACC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
75242770 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
75242797 AATTATCGCAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
75242824 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75242851 AATTACTGAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
75242878 AATTACCGAAATACCCCTGTA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
75242904 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
75242931 AATTATCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
75242957 AATTACC
1 AATTACC
75242964 ATTTTGCCCC
Statistics
Matches: 290, Mismatches: 34, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
26 62 0.21
27 227 0.78
28 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:75242774 original size:134 final size:135
Alignment explanation
Indices: 75242609--75242945 Score: 531
Period size: 134 Copynumber: 2.5 Consensus size: 135
75242599 CGATTTACAA
75242609 AATTACCGAAATACCCCTGTAGGGTAGAATTA-TCGAAATACCCCTGTAGGGTAGAATTATCGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAGAATTATCGAA
*
75242673 ATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGATA-AATTA-TCGAAATACCCTTGT
65 ATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACT-GAAATACCCCTGT
*
75242736 AGGGTAG
129 AGAGTAG
*
75242743 AATTACC-AGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGCA
1 AATTACCGA-AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAA
* * *
75242807 ATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTA
65 ATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACTGAAATACCCCTGTA
75242872 GAGTAG
130 GAGTAG
* * *
75242878 AATTACCGAAATACCCCTGTA-GGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTATCGAGA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAA
75242942 TACC
66 TACC
75242946 TTGTGGGGTA
Statistics
Matches: 188, Mismatches: 10, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
133 1 0.01
134 142 0.76
135 43 0.23
136 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (135 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAA
TACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACTGAAATACCCCTGTAG
AGTAG
Found at i:75243442 original size:22 final size:22
Alignment explanation
Indices: 75243390--75243445 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
75243380 TTAAAGCCTT
* * *
75243390 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTATGCCAAC
*
75243412 CT-ACATATGGCTCTATGCCAAC
1 CTGA-TTATGGCTCTATGCCAAC
75243434 CTGATTATGGCT
1 CTGATTATGGCT
75243446 GTGTACCAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 25 0.93
23 1 0.04
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTCTATGCCAAC
Found at i:75243642 original size:27 final size:27
Alignment explanation
Indices: 75243612--75243714 Score: 95
Period size: 27 Copynumber: 3.8 Consensus size: 27
75243602 TATTCTGTTA
* *
75243612 AGTGGCTTTGCCACATTATCTGTTTCT
1 AGTGGCTATGCCACAATATCTGTTTCT
75243639 AGTGGCTATGCCACAAATATCTG-TTCT
1 AGTGGCTATGCCAC-AATATCTGTTTCT
*
75243666 -GATGGCTCTGCCACAATATCTGTATT-T
1 AG-TGGCTATGCCACAATATCTGT-TTCT
* * * *
75243693 GGTGACTCTGTCACAATATCTG
1 AGTGGCTATGCCACAATATCTG
75243715 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
26 9 0.14
27 47 0.71
28 10 0.15
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.37
Consensus pattern (27 bp):
AGTGGCTATGCCACAATATCTGTTTCT
Found at i:75243860 original size:6 final size:6
Alignment explanation
Indices: 75243851--75244031 Score: 158
Period size: 6 Copynumber: 29.8 Consensus size: 6
75243841 TTGCATTCAC
* * * *
75243851 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG -TTACTA ATACTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATT-CTG ATTCTG
* *
75243900 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
75243949 ATTCTG ATTCTA ATTCTG ATTCTG -TTACTA ATACTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
75243997 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCT
75244032 CATTTTGGTT
Statistics
Matches: 141, Mismatches: 20, Indels: 28
0.75 0.11 0.15
Matches are distributed among these distances:
5 10 0.07
6 119 0.84
7 10 0.07
8 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:75243911 original size:30 final size:30
Alignment explanation
Indices: 75243876--75244031 Score: 207
Period size: 30 Copynumber: 5.4 Consensus size: 30
75243866 CTGTCACCTA
75243876 ATTCTGATTCTGTTACTAATACTGATTCTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
75243906 ATTCTGATTCTG----T--TACTGATTCTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
* * *
75243930 ATTCTGATTCTGTCACCTAATTCTGATTCTA
1 ATTCTGATTCTGTTA-CTAATACTGATTCTG
*
75243961 ATTCTGATTCTGTTACTAATACTGATTTTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
* *
75243991 ATTCTGATTCTGTTACTGATTCTGATTCTG
1 ATTCTGATTCTGTTACTAATACTGATTCTG
75244021 ATTCTGATTCT
1 ATTCTGATTCT
75244032 CATTTTGGTT
Statistics
Matches: 110, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
24 23 0.21
26 1 0.01
29 1 0.01
30 62 0.56
31 23 0.21
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGTTACTAATACTGATTCTG
Found at i:75243986 original size:73 final size:73
Alignment explanation
Indices: 75243851--75244014 Score: 210
Period size: 73 Copynumber: 2.2 Consensus size: 73
75243841 TTGCATTCAC
* * *
75243851 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTATTACTAATACTGATTCTAATACTGATTC
75243916 TG-TTACTG
66 TGATT-CTG
* *
75243924 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTAATT-CTGATTCTG-TTACTAATACTGAT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCT-ATTACTAATACTGATT-CTAATACTGAT
*
75243987 TTTGATTCTG
64 TCTGATTCTG
75243997 ATTCTG-TTACTGATTCTG
1 ATTCTGATT-CTGATTCTG
75244015 ATTCTGATTC
Statistics
Matches: 81, Mismatches: 6, Indels: 8
0.85 0.06 0.08
Matches are distributed among these distances:
72 4 0.05
73 73 0.90
74 4 0.05
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (73 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTATTACTAATACTGATTCTAATACTGATTC
TGATTCTG
Found at i:75245215 original size:40 final size:40
Alignment explanation
Indices: 75245156--75245339 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
75245146 TATTCGAATG
* * *
75245156 ATATCCAGGCTAAGTTCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* * * *
75245196 ATATCCGGACTGAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
75245236 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
75245276 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
75245316 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
75245340 CTTGTGCGAG
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:75245296 original size:80 final size:79
Alignment explanation
Indices: 75245156--75245375 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 79
75245146 TATTCGAATG
* ** * * *
75245156 ATATCCAGGCTAAGTTCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTGAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAG-TCCCGAAGGC
* *
75245220 ATTTGTGCGAGTTG-CT
64 ATTTATGCGAG-TGACC
* *
75245236 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAGGCA
*
75245301 TTTATGCTAGTGACC
65 TTTATGCGAGTGACC
* * * *
75245316 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GACTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAG
75245376 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
78 13 0.11
79 20 0.17
80 87 0.73
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAGGCAT
TTATGCGAGTGACC
Found at i:75251444 original size:32 final size:32
Alignment explanation
Indices: 75251403--75251464 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
75251393 ATCGTAGACT
75251403 ATAAAAATACAATAAAAATAAATTTTCTTACC
1 ATAAAAATACAATAAAAATAAATTTTCTTACC
75251435 ATAAAAATACAATAAAAATAAATTTTCTTA
1 ATAAAAATACAATAAAAATAAATTTTCTTA
75251465 TGTCAAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.32
Consensus pattern (32 bp):
ATAAAAATACAATAAAAATAAATTTTCTTACC
Found at i:75254813 original size:12 final size:14
Alignment explanation
Indices: 75254798--75254829 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
75254788 GTGAGAACAC
75254798 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
75254810 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
75254824 ATGTGT
1 ATGTGT
75254830 TTAAGACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:75255000 original size:84 final size:84
Alignment explanation
Indices: 75254852--75255010 Score: 210
Period size: 84 Copynumber: 1.9 Consensus size: 84
75254842 TAGGTCACGT
* * * *
75254852 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCGCACATGTAGTACAAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACACATGTAGTACAAAGTG
*
75254917 CAGGCTACTATGCATACCC
66 CAAGCTACTATGCATACCC
* ** ** * *
75254936 GTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGATAAGTCACATGTGTGGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACACATGTAGTACAAAGTG
75255001 CAAGCTACTA
66 CAAGCTACTA
75255011 CGTGTATCAG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
84 63 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (84 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACACATGTAGTACAAAGTG
CAAGCTACTATGCATACCC
Found at i:75255016 original size:50 final size:50
Alignment explanation
Indices: 75254936--75255060 Score: 187
Period size: 50 Copynumber: 2.5 Consensus size: 50
75254926 ATGCATACCC
* *
75254936 GTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGATAAGTCACAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACAT
* * * * *
75254986 GTGTGGTACTAAGTGCAAGCTACTACGTGTATCAGATTGATAGGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACAT
75255036 GTGTAGTACTAAGTGCAGGCTACTA
1 GTGTAGTACTAAGTGCAGGCTACTA
75255061 TGCGTACCAG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.30
Consensus pattern (50 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACAT
Found at i:75255881 original size:180 final size:180
Alignment explanation
Indices: 75255624--75255979 Score: 489
Period size: 180 Copynumber: 2.0 Consensus size: 180
75255614 CTGAGATCTA
* * * *
75255624 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTGTCGGACAGTGAAACAGGGGTAT
1 TACCATGAGATAAATAATTTTTAGTAAAGAAAGATCAGAACTATCGGACAGTGAAACAGCGGTAT
* *
75255689 CTTTAATGAATAAACTGTACTAATTTGCTAAACCAAAAATTAAT-AAAATTTTATGCTAATAATA
66 CTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATT-ATGAAAATTTTATGCTAAGAATA
* * * * * * *
75255753 TATGTTAGTCTATTTTCTTGGAGAATTAGTAGTTCTTAATTTGGAGTCCCG
130 TATATGAGTCTAGTTTCTGGGAAAATTAGTAGATATTAATTTGGAGTCCCG
* * * * *
75255804 TACCATGAGATAAATAATTTTTAGTAAAGAGAGTTCAGAACTATTGGACAGTGAAATAGCGGTGT
1 TACCATGAGATAAATAATTTTTAGTAAAGAAAGATCAGAACTATCGGACAGTGAAACAGCGGTAT
* * *
75255869 CTTTAATGAATAAATTGTACTAATTGGCTAAACCAAAAATTATGAAAATTTTATGGTAAGAGTAT
66 CTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTATGAAAATTTTATGCTAAGAATAT
* *
75255934 ATATGAGTCTAGTTTCTGGGAAAATTATTGGATATTAATTTGGAGT
131 ATATGAGTCTAGTTTCTGGGAAAATTAGTAGATATTAATTTGGAGT
75255980 TTTGTAGCTC
Statistics
Matches: 152, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
179 2 0.01
180 150 0.99
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (180 bp):
TACCATGAGATAAATAATTTTTAGTAAAGAAAGATCAGAACTATCGGACAGTGAAACAGCGGTAT
CTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTATGAAAATTTTATGCTAAGAATAT
ATATGAGTCTAGTTTCTGGGAAAATTAGTAGATATTAATTTGGAGTCCCG
Found at i:75262451 original size:14 final size:14
Alignment explanation
Indices: 75262432--75262480 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
75262422 CAATCCATTG
75262432 AAAGAGAAAAATAA
1 AAAGAGAAAAATAA
75262446 AAAGAGAAAAATAA
1 AAAGAGAAAAATAA
* *
75262460 AAAGAGTGAAAAGAA
1 AAAGAG-AAAAATAA
75262475 AAAGAG
1 AAAGAG
75262481 TGGAAAAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.06
Consensus pattern (14 bp):
AAAGAGAAAAATAA
Found at i:75262471 original size:15 final size:15
Alignment explanation
Indices: 75262439--75262487 Score: 64
Period size: 14 Copynumber: 3.3 Consensus size: 15
75262429 TTGAAAGAGA
*
75262439 AAAATAAAAAGAG-A
1 AAAATAAAAAGAGTG
75262453 AAAATAAAAAGAGTG
1 AAAATAAAAAGAGTG
*
75262468 AAAAGAAAAAGAGTGG
1 AAAATAAAAAGAGT-G
75262484 AAAA
1 AAAA
75262488 AGTGATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
14 13 0.42
15 13 0.42
16 5 0.16
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.08
Consensus pattern (15 bp):
AAAATAAAAAGAGTG
Found at i:75268178 original size:2 final size:2
Alignment explanation
Indices: 75268171--75268206 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
75268161 AATGGTATGC
75268171 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75268207 GTTAAATTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:75270249 original size:39 final size:39
Alignment explanation
Indices: 75270174--75270356 Score: 312
Period size: 39 Copynumber: 4.7 Consensus size: 39
75270164 CCGCACAAAG
*
75270174 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
75270214 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
75270253 GCCTTCGGGCTTAGCCCGGGTATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
75270292 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
75270331 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
75270357 TCGAACATTC
Statistics
Matches: 134, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 125 0.93
40 9 0.07
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:75270291 original size:78 final size:78
Alignment explanation
Indices: 75270146--75270356 Score: 314
Period size: 78 Copynumber: 2.7 Consensus size: 78
75270136 CTTTGGGACA
* ** * ** *
75270146 TAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACA
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACA
75270211 ATTGCCTTCGGGCT
65 ATTGCCTTCGGGCT
*
75270225 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAATTTGCACAA
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAA
75270290 TTGCCTTCGGGCT
66 TTGCCTTCGGGCT
* * *
75270303 TAGCCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
75270357 TCGAACATTC
Statistics
Matches: 120, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 89 0.74
79 31 0.26
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (78 bp):
TAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAA
TTGCCTTCGGGCT
Found at i:75272992 original size:2 final size:2
Alignment explanation
Indices: 75272985--75273015 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
75272975 ATTGAAAGGG
*
75272985 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75273016 AATAAATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75277519 original size:21 final size:20
Alignment explanation
Indices: 75277490--75277528 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
75277480 CGTACTTTAG
*
75277490 AAATAGGGCCTCGATGGGCCA
1 AAATAGGGCC-CAATGGGCCA
*
75277511 AAATTGGGCCCAATGGGC
1 AAATAGGGCCCAATGGGC
75277529 TTACGGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.28, C:0.23, G:0.33, T:0.15
Consensus pattern (20 bp):
AAATAGGGCCCAATGGGCCA
Found at i:75279307 original size:71 final size:71
Alignment explanation
Indices: 75279223--75279386 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
75279213 CGATTTGTCT
75279223 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75279288 CTTTCA
66 CTTTCA
75279294 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75279359 CTTTCA
66 CTTTCA
75279365 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
75279387 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:75279424 original size:71 final size:70
Alignment explanation
Indices: 75279223--75279420 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
75279213 CGATTTGTCT
* * * *
75279223 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75279288 CTTTCA
65 CTTTCA
* * * *
75279294 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75279359 CTTTCA
65 CTTTCA
* *
75279365 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
75279421 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:75286881 original size:71 final size:71
Alignment explanation
Indices: 75286797--75286960 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
75286787 CGATTTGTCT
75286797 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75286862 CTTTCA
66 CTTTCA
75286868 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75286933 CTTTCA
66 CTTTCA
75286939 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
75286961 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:75286998 original size:71 final size:70
Alignment explanation
Indices: 75286797--75286994 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
75286787 CGATTTGTCT
* * * *
75286797 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75286862 CTTTCA
65 CTTTCA
* * * *
75286868 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75286933 CTTTCA
65 CTTTCA
* *
75286939 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
75286995 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:75297031 original size:41 final size:41
Alignment explanation
Indices: 75296986--75297103 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
75296976 TGAAAGATAA
75296986 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
75297027 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
75297057 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
75297098 ATGTAG
1 ATGTAG
75297104 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:75297042 original size:71 final size:71
Alignment explanation
Indices: 75296954--75297117 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
75296944 GAGATGTATC
75296954 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
75297019 AGGACA
66 AGGACA
75297025 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
75297090 AGGACA
66 AGGACA
75297096 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
75297118 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:75302598 original size:50 final size:50
Alignment explanation
Indices: 75302526--75302772 Score: 262
Period size: 50 Copynumber: 4.9 Consensus size: 50
75302516 AAGACAGTTT
* *
75302526 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA
* * * ** * *
75302576 TAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCATACCCG-TTAA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA
* * * ** *
75302625 CTTCGATCACATATGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGA
1 --TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA
* * * *
75302677 TAAGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA
* * * *
75302727 TAGGTCGCATGTGTTGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
75302773 GAGCTTCGGT
Statistics
Matches: 157, Mismatches: 37, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
49 3 0.02
50 118 0.75
51 34 0.22
52 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA
Found at i:75306435 original size:40 final size:40
Alignment explanation
Indices: 75306350--75306500 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
75306340 AATTGAATGA
* * *
75306350 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
75306390 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
75306431 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
75306470 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
75306501 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:75306514 original size:40 final size:40
Alignment explanation
Indices: 75306387--75306516 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
75306377 ATGCTGGAAA
* * * *
75306387 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
75306427 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
75306467 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
75306507 TTATATCCGG
1 TTATATCCGG
75306517 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:75318554 original size:20 final size:20
Alignment explanation
Indices: 75318520--75318569 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
75318510 TTCCTAGCAC
*
75318520 ATTTATTCATAAAATTTTATA
1 ATTT-TTCATAAAATTTTACA
*
75318541 ATTTTTCATCAAATTTTACA
1 ATTTTTCATAAAATTTTACA
75318561 ATTTTTCAT
1 ATTTTTCAT
75318570 TTTAGTCCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTTCATAAAATTTTACA
Found at i:75331484 original size:47 final size:47
Alignment explanation
Indices: 75331415--75331572 Score: 280
Period size: 47 Copynumber: 3.4 Consensus size: 47
75331405 CCCTTCGGGA
* * *
75331415 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
75331462 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
75331509 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
75331556 CTTATCACATATATACA
1 CTTATCACATATATACA
75331573 TCTCATACAT
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 106 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:75331493 original size:25 final size:25
Alignment explanation
Indices: 75331465--75331543 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
75331455 ACTCGGCCTT
*
75331465 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
75331490 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
75331512 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
75331537 ATCACAT
1 ATCACAT
75331544 TGGCCATTCG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:75331518 original size:22 final size:22
Alignment explanation
Indices: 75331490--75331565 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 22
75331480 TTTCACATTC
75331490 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
75331512 ATCACATATATGCACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
75331536 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
75331559 ATCACAT
1 ATCACAT
75331566 ATATACATCT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 18 0.44
23 6 0.15
24 6 0.15
25 11 0.27
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:75331652 original size:19 final size:19
Alignment explanation
Indices: 75331613--75331652 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
75331603 ATCAATTTCA
* *
75331613 AAAATCACATGTTTACAAC
1 AAAATCACATATTCACAAC
*
75331632 AAAATCACATATTCACTAC
1 AAAATCACATATTCACAAC
75331651 AA
1 AA
75331653 GCAGTTTTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.23, G:0.03, T:0.25
Consensus pattern (19 bp):
AAAATCACATATTCACAAC
Found at i:75332992 original size:21 final size:18
Alignment explanation
Indices: 75332968--75333010 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 18
75332958 TAATTAAAAA
75332968 AATTTCCCGAATTCATGAATG
1 AATTT-CCGAATTCAT-AA-G
*
75332989 AATTTCCGATTTCATAAG
1 AATTTCCGAATTCATAAG
75333007 AATT
1 AATT
75333011 CAAGCTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 2 0.10
20 9 0.43
21 5 0.24
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (18 bp):
AATTTCCGAATTCATAAG
Found at i:75336348 original size:20 final size:20
Alignment explanation
Indices: 75336323--75336366 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
75336313 CAGCAAAGTT
*
75336323 TTGAGAAAGTGAAAGCATTA
1 TTGAGAAAGTGAAAACATTA
*
75336343 TTGAGAAATTGAAAACATTA
1 TTGAGAAAGTGAAAACATTA
75336363 TTGA
1 TTGA
75336367 TTGGGGCACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30
Consensus pattern (20 bp):
TTGAGAAAGTGAAAACATTA
Found at i:75345937 original size:46 final size:45
Alignment explanation
Indices: 75345848--75346070 Score: 195
Period size: 46 Copynumber: 4.8 Consensus size: 45
75345838 GCATATTTGT
* * *
75345848 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATCTCATAG
* *
75345894 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTC-GAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-T-CATCTCATAG
* *
75345940 GCTGATGCATATCCCAGACATGTCTTACACTAGCACTCATCTCAATA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG--CTCATCTC-ATAG
* ** *
75345987 -CTGATGCCATGTTGCAGACATGGTCTTACACTAGCTC-TCATAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATC-TCATA-G
* *
75346034 GCCGATGCATGTCCCAAACATGTCTTACACTATCTCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCA
75346071 CACAAGTGAC
Statistics
Matches: 146, Mismatches: 17, Indels: 27
0.77 0.09 0.14
Matches are distributed among these distances:
44 12 0.08
45 20 0.14
46 72 0.49
47 23 0.16
48 19 0.13
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCATCTCATAG
Found at i:75350298 original size:40 final size:40
Alignment explanation
Indices: 75350232--75350438 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
75350222 AAATTGAATG
* * * ** *
75350232 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
* *
75350271 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
* *
75350311 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
* * *
75350351 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGACT
* * *
75350391 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTGACT
75350431 ATATCCGG
1 ATATCCGG
75350439 TTATATTCCG
Statistics
Matches: 147, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 17 0.12
40 128 0.87
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGACT
Found at i:75358422 original size:40 final size:40
Alignment explanation
Indices: 75358217--75358424 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
75358207 AAATTGAATG
* * * * **
75358217 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* **
75358257 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* **
75358297 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
75358337 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGATT
* *
75358377 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTGATT
75358417 ATATCCGG
1 ATATCCGG
75358425 TTATATTCCG
Statistics
Matches: 147, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
39 4 0.03
40 141 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:75361052 original size:21 final size:21
Alignment explanation
Indices: 75361028--75361067 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
75361018 CTGTATTAAC
75361028 TTAGCTCATGACTGGGCTAAG
1 TTAGCTCATGACTGGGCTAAG
75361049 TTAGCTCATGACTGGGCTA
1 TTAGCTCATGACTGGGCTA
75361068 TGAAAATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (21 bp):
TTAGCTCATGACTGGGCTAAG
Found at i:75363590 original size:20 final size:22
Alignment explanation
Indices: 75363552--75363591 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
75363542 TTCAAATACG
*
75363552 ATAATATATATATATTTTCCTA
1 ATAATATATATATAATTTCCTA
75363574 ATAATA-AT-TATAATTTCC
1 ATAATATATATATAATTTCC
75363592 ATAAATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATATATATAATTTCCTA
Found at i:75365524 original size:53 final size:53
Alignment explanation
Indices: 75365341--75365595 Score: 261
Period size: 55 Copynumber: 4.8 Consensus size: 53
75365331 ATTAGGGTTT
* * * *
75365341 AAGGATACCATGTATGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-GTTCATAAGGC
* * * *
75365396 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACGATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
75365451 AAAGG-TCCCATGTAAGACCATGTCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
*
75365504 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * * *
75365553 AAGGATACCACGTACGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
75365596 GTACCCGTGT
Statistics
Matches: 172, Mismatches: 23, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 6 0.03
53 46 0.27
54 8 0.05
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:75365547 original size:108 final size:110
Alignment explanation
Indices: 75365348--75365548 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
75365338 TTTAAGGATA
* * *
75365348 CCATGTATGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
* *
75365413 CCATGTTAAGACATGGCATTGATAAGTTACGATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACGATAAGGCAAAGGTC
* * *
75365458 CCATGTAAGACCATGTCAAGGCATGGC-ATTGGTGA-GTTCATAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
*
75365521 CCATGTCAAGACATGGCAATGGTAAGTT
66 CCATGTCAAGACATGGCAATGATAAGTT
75365549 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 50 0.61
109 7 0.09
110 25 0.30
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACGATAAGGCAAAGGTC
Found at i:75365690 original size:23 final size:24
Alignment explanation
Indices: 75365664--75365711 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
75365654 AAGGTAAGGT
*
75365664 AAGGTAAGACGAGTT-ATACTAGA
1 AAGGTAAGACAAGTTCATACTAGA
*
75365687 AAGGTAAGACAAGTTCATGCTAGA
1 AAGGTAAGACAAGTTCATACTAGA
75365711 A
1 A
75365712 GAGCAAAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.44, C:0.10, G:0.25, T:0.21
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATACTAGA
Found at i:75365808 original size:16 final size:16
Alignment explanation
Indices: 75365787--75365817 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75365777 ATAAATTTGA
75365787 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
75365803 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
75365818 AGTGATGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:75369548 original size:124 final size:124
Alignment explanation
Indices: 75369326--75369550 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
75369316 GAATTATGTG
* * ** * * *
75369326 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
75369391 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
75369450 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
75369515 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
75369551 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:75369672 original size:40 final size:40
Alignment explanation
Indices: 75369545--75369674 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75369535 ATGCTGGAAA
* *
75369545 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
75369585 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75369625 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75369665 TTATATCCGG
1 TTATATCCGG
75369675 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75369673 original size:80 final size:80
Alignment explanation
Indices: 75369507--75369674 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
75369497 CAATTGAATG
* * *
75369507 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
75369572 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
75369587 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
75369651 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
75369667 ATATCCGG
1 ATATCCGG
75369675 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:75377714 original size:40 final size:40
Alignment explanation
Indices: 75377587--75377716 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75377577 ATGCTGGAAA
* *
75377587 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
75377627 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75377667 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75377707 TTATATCCGG
1 TTATATCCGG
75377717 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75377715 original size:80 final size:80
Alignment explanation
Indices: 75377549--75377716 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
75377539 CAATTGAATG
* * *
75377549 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
75377614 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
75377629 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
75377693 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
75377709 ATATCCGG
1 ATATCCGG
75377717 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:75387722 original size:123 final size:123
Alignment explanation
Indices: 75387501--75387724 Score: 315
Period size: 123 Copynumber: 1.8 Consensus size: 123
75387491 GAATTATGTG
* * * ** * * *
75387501 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
75387566 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTGCGTTTGAGCCTTAGTAACGA
*
75387624 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
75387689 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
75387725 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
122 1 0.01
123 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTGCGTTTGAGCCTTAGTAACGA
Found at i:75387846 original size:40 final size:40
Alignment explanation
Indices: 75387719--75387848 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75387709 ATGCTGGAAA
* *
75387719 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
75387759 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75387799 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75387839 TTATATCCGG
1 TTATATCCGG
75387849 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75387847 original size:80 final size:80
Alignment explanation
Indices: 75387681--75387848 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
75387671 CAATTGAATG
* * *
75387681 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
75387746 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
75387761 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
75387825 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
75387841 ATATCCGG
1 ATATCCGG
75387849 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:75388763 original size:40 final size:40
Alignment explanation
Indices: 75388637--75388765 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
75388627 ATGCTGGAAA
* *
75388637 TTATATCCGGGTTAAGA-CCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
75388676 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75388716 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75388756 TTATATCCGG
1 TTATATCCGG
75388766 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 18 0.24
40 57 0.76
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75396654 original size:124 final size:124
Alignment explanation
Indices: 75396432--75396656 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
75396422 GAATTATGTG
* * ** * * *
75396432 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
75396497 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
75396556 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
75396621 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
75396657 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:75396778 original size:40 final size:40
Alignment explanation
Indices: 75396651--75396780 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75396641 ATGCTGGAAA
* *
75396651 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
75396691 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75396731 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75396771 TTATATCCGG
1 TTATATCCGG
75396781 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75396779 original size:80 final size:80
Alignment explanation
Indices: 75396613--75396780 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
75396603 CAATTGAATG
* * *
75396613 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
75396678 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
75396693 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
75396757 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
75396773 ATATCCGG
1 ATATCCGG
75396781 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:75400023 original size:23 final size:22
Alignment explanation
Indices: 75399996--75400052 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 22
75399986 AGCCTGGATA
75399996 AGCTTCCTAATAGGCTCTTTGTG
1 AGCTTCCTAAT-GGCTCTTTGTG
75400019 AGCTTCCCGATTAATGGCTCTTTGTG
1 AGCTT-CC---TAATGGCTCTTTGTG
75400045 AGCTTCCT
1 AGCTTCCT
75400053 GTTATATGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
22 1 0.03
23 5 0.17
24 2 0.07
25 2 0.07
26 16 0.53
27 4 0.13
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.39
Consensus pattern (22 bp):
AGCTTCCTAATGGCTCTTTGTG
Found at i:75406784 original size:40 final size:39
Alignment explanation
Indices: 75406619--75406802 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
75406609 AAATTGAATG
* * *
75406619 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
75406659 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
75406699 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
75406739 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
75406778 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
75406803 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Done.