Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 242 of 433
Found at i:75406827 original size:80 final size:81
Alignment explanation
Indices: 75406659--75406847 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
75406649 GCTGGAAATT
* * * * *
75406659 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
75406724 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * *
75406740 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
75406803 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
75406819 ATAACCGGGCTATGTCCCGAAGGCGTTTG
1 ATAACCGGGCTAAGACCCGAAGGCATTTG
75406848 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
79 2 0.02
80 85 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:75414098 original size:46 final size:48
Alignment explanation
Indices: 75413990--75414103 Score: 146
Period size: 48 Copynumber: 2.4 Consensus size: 48
75413980 AAGCTGACAC
* * *
75413990 CATGTCCCAGACAAGTCTTACACTAGCTTGTATATATCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGCATAAATCGAGGCTGATG
*
75414038 CATGTCCCAGACATGTCTTACACTAGCTCT-CATAAA--GTGG-TCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGCATAAATCGAGGCT-GATG
75414084 CATGTCCCAGACATGTCTTA
1 CATGTCCCAGACATGTCTTA
75414104 TGTTAGCTCA
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
45 1 0.02
46 27 0.45
48 31 0.52
49 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGCATAAATCGAGGCTGATG
Found at i:75415162 original size:29 final size:29
Alignment explanation
Indices: 75415120--75415178 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
75415110 GGAAGAAAGA
75415120 TGAAAAGATGACATCCCTTTTCTTTTTGT
1 TGAAAAGATGACATCCCTTTTCTTTTTGT
75415149 TGAAAAGATGACATCCCTTTTCTTTTTGT
1 TGAAAAGATGACATCCCTTTTCTTTTTGT
75415178 T
1 T
75415179 TTATTTTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.46
Consensus pattern (29 bp):
TGAAAAGATGACATCCCTTTTCTTTTTGT
Found at i:75416708 original size:43 final size:42
Alignment explanation
Indices: 75416647--75416758 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 42
75416637 TACCGCACTA
* * * *
75416647 ATGCCATATCCTGGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATAACCTAGATATGGTCTTACATG-AAGCCTCATATCG
75416689 ATGCCAATAACCTAGATATGGTCTTACATGAAGCCTCATATCG
1 ATGCC-ATAACCTAGATATGGTCTTACATGAAGCCTCATATCG
* *
75416732 ATACCAT-ATCTCAGATATGGTCTTACA
1 ATGCCATAACCT-AGATATGGTCTTACA
75416759 CGTATTATAA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
41 3 0.05
42 24 0.39
43 34 0.56
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATAACCTAGATATGGTCTTACATGAAGCCTCATATCG
Found at i:75416866 original size:40 final size:41
Alignment explanation
Indices: 75416773--75416877 Score: 140
Period size: 41 Copynumber: 2.6 Consensus size: 41
75416763 TTATAATCTT
* * ****
75416773 GCACACTAAGTGTCATATATAGCCGAAGCTATCTCGGTCTC
1 GCACACTAAGTGCCATATATATCCGAAGCTATCTCCAAATC
*
75416814 GCACACTAAGTGCCATATATATCCTAAGCTAT-TCCAAATC
1 GCACACTAAGTGCCATATATATCCGAAGCTATCTCCAAATC
75416854 GCACACTAAGTGCCATATATATCC
1 GCACACTAAGTGCCATATATATCC
75416878 AAATCATCGT
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
40 28 0.49
41 29 0.51
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (41 bp):
GCACACTAAGTGCCATATATATCCGAAGCTATCTCCAAATC
Found at i:75423247 original size:40 final size:40
Alignment explanation
Indices: 75423190--75423327 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 40
75423180 CGGACGATAA
*
75423190 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAATTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAATTACTA-TAT
* * * *
75423230 CTGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAATTACTATAT
* * * * *
75423270 CCGGGATATGTCCCGAAGGCATTCGAGCG-AGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAATTA-CTATAT
* *
75423310 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75423328 TACTTGGCTT
Statistics
Matches: 80, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
39 16 0.20
40 64 0.80
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAATTACTATAT
Found at i:75426342 original size:46 final size:46
Alignment explanation
Indices: 75426218--75426343 Score: 180
Period size: 46 Copynumber: 2.7 Consensus size: 46
75426208 TGTAACCCGC
* * * * * *
75426218 CCATAAGCGAACTCGGACTGAACTCAACAAGCTCGGCCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCCGACGTTCGCAT
75426264 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCCGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCCGACGTTCGCAT
* *
75426310 CCATAAGTGAAATCGGACTCAACTCAATGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
75426344 AGATGCCCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCCGACGTTCGCAT
Found at i:75431137 original size:27 final size:27
Alignment explanation
Indices: 75431107--75431160 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
75431097 ATGACCAAGA
*
75431107 TACCCCTATAGGGTAAAATGACT-ATTT
1 TACCCCTAGAGGGT-AAATGACTGATTT
*
75431134 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
75431161 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:75433514 original size:27 final size:27
Alignment explanation
Indices: 75433484--75433625 Score: 146
Period size: 27 Copynumber: 5.3 Consensus size: 27
75433474 TTTAGTTTAC
*
75433484 TAAAATTACCGAAATACCGTCGATTTG
1 TAAAATTACCGAAATACCGTCGACTTG
* * *
75433511 TAAAATTACTGAAATACCTTTGACTTG
1 TAAAATTACCGAAATACCGTCGACTTG
* * * * *
75433538 TAAAATTA-CTAAAGTACC-CCCAGTTTA
1 TAAAATTACCGAAA-TACCGTCGA-CTTG
75433565 TAAAATTACCGAAATACCGTCGA-TTG
1 TAAAATTACCGAAATACCGTCGACTTG
* *
75433591 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCGTCGACTTG
75433618 TAAAATTA
1 TAAAATTA
75433626 TCAAAGTACC
Statistics
Matches: 93, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
26 27 0.29
27 60 0.65
28 6 0.06
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (27 bp):
TAAAATTACCGAAATACCGTCGACTTG
Found at i:75433669 original size:27 final size:27
Alignment explanation
Indices: 75433635--75433777 Score: 157
Period size: 27 Copynumber: 5.3 Consensus size: 27
75433625 ATCAAAGTAC
* *
75433635 CCCT-GATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * ***
75433661 TCCTCGATTTACAGAATTAATATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
75433688 CCTTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
*
75433715 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
75433742 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
75433769 CCCTCGATT
1 CCCTCGATT
75433778 GTGAAATTAC
Statistics
Matches: 97, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
26 5 0.05
27 90 0.93
28 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:75433669 original size:80 final size:80
Alignment explanation
Indices: 75433477--75433655 Score: 281
Period size: 80 Copynumber: 2.2 Consensus size: 80
75433467 AGAATACTTT
*
75433477 AGTTTACTAAAATTACCGAAATACCGTCGATTTGTAAAATTACTGAAATACCTTTGACTTGTAAA
1 AGTTTA-TAAAATTACCGAAATACCGTCGA-TTGTAAAATTACTGAAATACCTTCGACTTGTAAA
75433542 ATTACTAAAGTACCCCC
64 ATTACTAAAGTACCCCC
75433559 AGTTTATAAAATTACCGAAATACCGTCGATTGTAAAATTACTGAAATACCTTCGACTTGTAAAAT
1 AGTTTATAAAATTACCGAAATACCGTCGATTGTAAAATTACTGAAATACCTTCGACTTGTAAAAT
75433624 TA-TCAAAGTA-CCCC
66 TACT-AAAGTACCCCC
* *
75433638 TGATTTATAGAATTACCG
1 AG-TTTATAAAATTACCG
75433656 TTTTATCCTC
Statistics
Matches: 92, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
79 6 0.07
80 57 0.62
81 23 0.25
82 6 0.07
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (80 bp):
AGTTTATAAAATTACCGAAATACCGTCGATTGTAAAATTACTGAAATACCTTCGACTTGTAAAAT
TACTAAAGTACCCCC
Found at i:75433706 original size:54 final size:54
Alignment explanation
Indices: 75433648--75433777 Score: 206
Period size: 54 Copynumber: 2.4 Consensus size: 54
75433638 TGATTTATAG
* * * *
75433648 AATTACCGTTTTATCCTCGATTTACAGAATTAATATTTTACCTTCAGTTTACAA
1 AATTACCGTTTTACCCTCGATTTACAAAATTAACATTTTACCCTCAGTTTACAA
* *
75433702 AATTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAA
1 AATTACCGTTTTACCCTCGATTTACAAAATTAACATTTTACCCTCAGTTTACAA
75433756 AATTACCGTTTTACCCTCGATT
1 AATTACCGTTTTACCCTCGATT
75433778 GTGAAATTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTACAAAATTAACATTTTACCCTCAGTTTACAA
Found at i:75433839 original size:27 final size:27
Alignment explanation
Indices: 75433809--75433979 Score: 209
Period size: 27 Copynumber: 6.3 Consensus size: 27
75433799 TGTAGGATAG
75433809 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
75433836 AATTATCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
75433863 AATTACCAAAATACCACTGGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
75433890 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
75433917 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
75433944 AATTACTAAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCCTAGTTTGTAA
*
75433971 ATTTACCAA
1 AATTACCAA
75433980 GACACCCTTG
Statistics
Matches: 122, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
26 3 0.02
27 115 0.94
28 4 0.03
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:75433850 original size:54 final size:52
Alignment explanation
Indices: 75433776--75433979 Score: 192
Period size: 54 Copynumber: 3.8 Consensus size: 52
75433766 TTACCCTCGA
* * ** *
75433776 TTGTGAAATTACTGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTAC-AAAATACCCCTGTTTG-TAAAATTACCAAAATACCCCTAGT
* *
75433830 TTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGT
1 TTGTAAAATTA-CAAAATACCCCT-GTTTGTAAAATTACCAAAATACCCCTAGT
* ** *
75433884 TTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTA-CAAAATACCC-CTGTTTGTAAAATTACCAAAATACCCCTAGT
** * * *
75433938 TTACAAAATTACTAAAATACCCTTGGTTTGTAGATTTACCAA
1 TTGTAAAATTAC-AAAATACCCCT-GTTTGTAAAATTACCAA
75433980 GACACCCTTG
Statistics
Matches: 123, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
53 1 0.01
54 117 0.95
55 5 0.04
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (52 bp):
TTGTAAAATTACAAAATACCCCTGTTTGTAAAATTACCAAAATACCCCTAGT
Found at i:75434919 original size:25 final size:25
Alignment explanation
Indices: 75434850--75434911 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
75434840 AGGAAGTGCT
*
75434850 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
75434875 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
75434900 AAAAGGGCTTTG
1 AAAAGGGCTTTG
75434912 ATCCAGTTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:75436400 original size:27 final size:28
Alignment explanation
Indices: 75436369--75436438 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
75436359 ATAGTGAGTC
*
75436369 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
75436396 TGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
75436424 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75436439 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 20 0.53
28 18 0.47
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75444390 original size:37 final size:37
Alignment explanation
Indices: 75444340--75444430 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
75444330 TTATTACGAA
75444340 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
75444377 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
75444414 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
75444431 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:75444529 original size:48 final size:48
Alignment explanation
Indices: 75444470--75444621 Score: 277
Period size: 48 Copynumber: 3.2 Consensus size: 48
75444460 TGTTACAACA
*
75444470 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
75444518 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
75444566 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
75444614 TTCACATT
1 TTCACATT
75444622 CATCACATCG
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 101 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:75444675 original size:64 final size:58
Alignment explanation
Indices: 75444593--75444826 Score: 186
Period size: 49 Copynumber: 4.1 Consensus size: 58
75444583 GCTTTACCAC
*
75444593 ATATACATATCACACATATGTTTCACATTCATCACATCGCCATTAGGCCTTATCACAT
1 ATATACATACCACACATATGTTTCACATTCATCACATCGCCATTAGGCCTTATCACAT
* * * ** ** * * * * *
75444651 ATATAGCTTTACCACATATACATATCACACATATGTTTACATTAGCCATTCGGCTTTA-C-CAC
1 ATATA-C-ATACCACACAT--ATGTTTCACAT-TCATCACA-TCGCCATTAGGCCTTATCACAT
*
75444713 ATATACATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATACATACCACACATATGTTTCACATTCATCACATC-GCCATTAGGCCTTATCACAT
75444772 ATAT--ATA-CAC-C------TTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATACATACCACACATATGTTTCACATTCATCACATC-GCCATTAGGCCTTATCACAT
75444821 ATATAC
1 ATATAC
75444827 TCTTTCACAT
Statistics
Matches: 139, Mismatches: 26, Indels: 29
0.72 0.13 0.15
Matches are distributed among these distances:
49 42 0.30
55 1 0.01
56 4 0.03
57 20 0.14
58 14 0.10
59 7 0.05
60 16 0.12
61 1 0.01
62 15 0.11
63 6 0.04
64 13 0.09
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.32
Consensus pattern (58 bp):
ATATACATACCACACATATGTTTCACATTCATCACATCGCCATTAGGCCTTATCACAT
Found at i:75444713 original size:120 final size:122
Alignment explanation
Indices: 75444535--75444776 Score: 452
Period size: 120 Copynumber: 2.0 Consensus size: 122
75444525 TAGCCATTCG
*
75444535 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCCTTCGGCTTTACCACATATACA
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
75444600 TATCACACATATGTTTCACATTCATCACATC-GCCATTAGGCCTTATCACATATATA
66 TATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
75444656 GCTTTACCACATATACATATCACACATATGTTT-ACATTAGCCATTCGGCTTTACCACATATACA
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
75444720 TATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 TATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
75444777 TACACCTTCA
Statistics
Matches: 118, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
120 61 0.52
121 57 0.48
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.33
Consensus pattern (122 bp):
GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
TATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:75444787 original size:49 final size:49
Alignment explanation
Indices: 75444733--75445019 Score: 506
Period size: 49 Copynumber: 5.9 Consensus size: 49
75444723 CACACATATG
*
75444733 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
75444782 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
75444829 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
75444878 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
75444927 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
75444976 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
75445020 CATCTCATAC
Statistics
Matches: 228, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 44 0.19
49 184 0.81
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:75448951 original size:40 final size:40
Alignment explanation
Indices: 75448796--75448938 Score: 236
Period size: 40 Copynumber: 3.6 Consensus size: 40
75448786 CCAGCATGAT
* * *
75448796 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
75448836 TGCTCTTCGGAACTTAGTCC-GATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
75448875 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
75448915 TGCTCTTCGGAATTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
75448939 TAACCACAAG
Statistics
Matches: 98, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 46 0.47
40 52 0.53
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:75448962 original size:79 final size:80
Alignment explanation
Indices: 75448794--75448963 Score: 231
Period size: 79 Copynumber: 2.1 Consensus size: 80
75448784 CACCAGCATG
*
75448794 ATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGAT
1 ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGAT
* * *
75448859 ACATCACTAGCACGA
66 AAACCACAAGCACGA
* * *
75448874 A-TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAG-CCGGA
1 ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCC-GA
75448937 TATAACCACAAGCAC-A
65 TA-AACCACAAGCACGA
75448953 ATTGC-CTTCGG
1 ATTGCTCTTCGG
75448964 GTCTTAACCG
Statistics
Matches: 80, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
78 2 0.03
79 65 0.81
80 13 0.16
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGAT
AAACCACAAGCACGA
Found at i:75449049 original size:40 final size:40
Alignment explanation
Indices: 75448796--75449054 Score: 235
Period size: 40 Copynumber: 6.5 Consensus size: 40
75448786 CCAGCATGAT
* * *
75448796 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
* * * *
75448836 TGCTCTTCGGAACTTAGTCC-GATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
* * * *
75448875 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
* * * * *
75448915 TGCTCTTCGGAATTTAG-CCGGATATAACCACAAGCACAAT
1 TGCTCTTCGGGACTTAGCCCGGATAT-ATCACTAGCACAAA
* * * *
75448955 TGC-CTTCGGGTCTTA-ACCGGGTATAACAACTCA-CACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATC-ACT-AGCACAAA
* *
75448994 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACAAA
75449034 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGGACTTAGCCCGG
75449055 GTATCATTCA
Statistics
Matches: 190, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 85 0.45
40 102 0.54
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
Found at i:75450796 original size:51 final size:51
Alignment explanation
Indices: 75450670--75450874 Score: 342
Period size: 51 Copynumber: 4.1 Consensus size: 51
75450660 AAATCATAAC
* *
75450670 ATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--AT
1 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTATCACATAT
* *
75450719 GTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTATCACATAT
75450770 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTATCACATAT
1 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTATCACATAT
* *
75450821 ATACATACACTTTCACATTCATCACATTGGCCATTTGGCCGTATCACATAT
1 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTATCACATAT
75450872 ATA
1 ATA
75450875 CATCTCATAC
Statistics
Matches: 148, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
49 45 0.30
51 103 0.70
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (51 bp):
ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTATCACATAT
Found at i:75450872 original size:100 final size:99
Alignment explanation
Indices: 75450670--75450874 Score: 331
Period size: 100 Copynumber: 2.1 Consensus size: 99
75450660 AAATCATAAC
* * *
75450670 ATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATATACACTTTCAC
*
75450735 ATTCATCACATTGGCCATTAGGCCTTATCACATAT
66 ATTCATCACATTGGCCATTAGGCCGTATCACA-AT
75450770 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATACATACACTTTC
1 ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATAT--ATACACTTTC
*
75450835 ACATTCATCACATTGGCCATTTGGCCGTATCAC-AT
64 ACATTCATCACATTGGCCATTAGGCCGTATCACAAT
75450870 ATATA
1 ATATA
75450875 CATCTCATAC
Statistics
Matches: 98, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
100 57 0.58
102 41 0.42
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (99 bp):
ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATATACACTTTCAC
ATTCATCACATTGGCCATTAGGCCGTATCACAAT
Found at i:75454648 original size:28 final size:27
Alignment explanation
Indices: 75454585--75454654 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
75454575 ATAGTGAGTC
*
75454585 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
75454612 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
75454640 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75454655 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:75456522 original size:30 final size:30
Alignment explanation
Indices: 75456486--75456555 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 30
75456476 CGCTTACAGT
*
75456486 AAAGGCTTCGATCAGTGACATGATTTATGA
1 AAAGGCTTCGACCAGTGACATGATTTATGA
* * *
75456516 AAAGGCTATGGCCCAGTGATATGATTTATGA
1 AAAGGCT-TCGACCAGTGACATGATTTATGA
75456547 AAAGGCTTC
1 AAAGGCTTC
75456556 AGCCCAGTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 8 0.24
31 26 0.76
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (30 bp):
AAAGGCTTCGACCAGTGACATGATTTATGA
Found at i:75456561 original size:31 final size:31
Alignment explanation
Indices: 75456498--75456568 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 31
75456488 AGGCTTCGAT
* *
75456498 CAGTGACATGATTTATGAAAAGGCTATGGCC
1 CAGTGATATGATTTATGAAAAGGCTATAGCC
75456529 CAGTGATATGATTTATGAAAAGGCT-TCAGCC
1 CAGTGATATGATTTATGAAAAGGCTAT-AGCC
75456560 CAGT-ATATG
1 CAGTGATATG
75456569 TCGAGATTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
30 6 0.16
31 31 0.84
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (31 bp):
CAGTGATATGATTTATGAAAAGGCTATAGCC
Found at i:75456656 original size:33 final size:33
Alignment explanation
Indices: 75456619--75456682 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
75456609 TAAGGGCTAA
75456619 GGCCCAGACTTTACTGTTACTGAATAAGGCTTT
1 GGCCCAGACTTTACTGTTACTGAATAAGGCTTT
75456652 GGCCCAGACTTTACTGTTACTGAATAAGGCT
1 GGCCCAGACTTTACTGTTACTGAATAAGGCT
75456683 ACTGTGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (33 bp):
GGCCCAGACTTTACTGTTACTGAATAAGGCTTT
Found at i:75459796 original size:22 final size:22
Alignment explanation
Indices: 75459723--75459796 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
75459713 AACATGCCAT
*
75459723 TTGTAGACAAGCCACCACATAA
1 TTGTGGACAAGCCACCACATAA
* * *
75459745 TTGTGGATAAATGGCCACATAACA-CA
1 TTGTGGA-CAA--GCCAC--CACATAA
75459771 TTGTGGACAAGCCACCACATAA
1 TTGTGGACAAGCCACCACATAA
75459793 TTGT
1 TTGT
75459797 CAATAACAGC
Statistics
Matches: 39, Mismatches: 7, Indels: 12
0.67 0.12 0.21
Matches are distributed among these distances:
21 3 0.08
22 11 0.28
23 7 0.18
25 7 0.18
26 8 0.21
27 3 0.08
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (22 bp):
TTGTGGACAAGCCACCACATAA
Found at i:75462441 original size:27 final size:27
Alignment explanation
Indices: 75462385--75462495 Score: 118
Period size: 27 Copynumber: 4.1 Consensus size: 27
75462375 AGCATTGCTG
* * *
75462385 CCAGAACAGATAA-GGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
75462411 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
75462438 CCAGAACAGAT-ATATATGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
** * * *
75462465 TAAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
75462492 CCAG
1 CCAG
75462496 GATGCTTCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 15 0.21
27 54 0.77
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:75463937 original size:24 final size:24
Alignment explanation
Indices: 75463901--75463995 Score: 127
Period size: 24 Copynumber: 4.0 Consensus size: 24
75463891 AACACTGTTC
* * *
75463901 TCCCTAATTAGCTCCTAAATCCTC
1 TCCCTTATCAGCTCCTAAATCCTA
*
75463925 TCCCTTACCAGCTCCTAAATCCTA
1 TCCCTTATCAGCTCCTAAATCCTA
* *
75463949 TCCCTTATGATCTCCTAAATCCTA
1 TCCCTTATCAGCTCCTAAATCCTA
*
75463973 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAGCTCCTAAATCCT
75463996 CTCCTGACAG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.25, C:0.38, G:0.03, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAGCTCCTAAATCCTA
Found at i:75470275 original size:27 final size:27
Alignment explanation
Indices: 75470217--75470327 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
75470207 AGCATTACTG
* *
75470217 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
75470243 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
75470270 CTAGAACAGAT-ATGTGTGGTAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
** * *
75470297 CCA-AGTTAGATAAATGTGGCATAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
75470324 CCAG
1 CCAG
75470328 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 16 0.23
27 53 0.76
28 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:75471771 original size:24 final size:24
Alignment explanation
Indices: 75471736--75471836 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
75471726 CCAACACTAT
*
75471736 TCTCCCTAATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
75471760 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* *
75471784 TATCCCTTATCAACTTCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
75471808 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
75471832 TCTCC
1 TCTCC
75471837 TGATAGACTT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.26, C:0.40, G:0.01, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:75475905 original size:46 final size:46
Alignment explanation
Indices: 75475837--75475973 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
75475827 TATATATACA
* * * *
75475837 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
75475883 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
75475929 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCATATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
75475974 ACATGTTCAC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:75476033 original size:47 final size:46
Alignment explanation
Indices: 75475947--75476136 Score: 265
Period size: 47 Copynumber: 4.1 Consensus size: 46
75475937 ACACATTTCG
* * ** *
75475947 CATTAGCCATTCGGCCTTA-CCATATATACATGTTCACATTCATTA
1 CATTGGCCATTCGGCCTTATCCACATACGCATGTTCACATTCATCA
* * *
75475992 CATCGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATC-CACATACGCATGTTCACATTCATCA
75476039 CATTGGCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATC-CACATACGCATGTTCACATTCATCA
*
75476086 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATC-CACATACGCATGTTCACATTCATCA
75476133 CATT
1 CATT
75476137 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 17 0.13
46 1 0.01
47 115 0.86
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.33
Consensus pattern (46 bp):
CATTGGCCATTCGGCCTTATCCACATACGCATGTTCACATTCATCA
Found at i:75483940 original size:49 final size:49
Alignment explanation
Indices: 75483878--75484331 Score: 756
Period size: 49 Copynumber: 9.3 Consensus size: 49
75483868 ATGTATGAGA
75483878 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
75483927 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
75483976 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
75484025 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
75484074 TATATATATGTGATAAGGCCAAATGGCCGAAT-TGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCG-ATGTGATGAATGTGAAAGTG
75484123 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
75484172 TATATATATGTGATAAGGCCTAATGGCCGATGTGAAGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
75484221 CATATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
75484270 --TATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAATGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
75484317 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
75484332 TTCCGAAGGG
Statistics
Matches: 385, Mismatches: 16, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
47 53 0.14
48 3 0.01
49 327 0.85
50 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:75486175 original size:43 final size:43
Alignment explanation
Indices: 75486127--75486214 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
75486117 TATTAACAAG
* * * *
75486127 ATGTGATTATGTGTAACACCATGTTTGGGACATTGGCATCATT
1 ATGTGATTACGTATAACACCATGTCTGAGACATTGGCATCATT
* *
75486170 ATGTGATTACGTATAAGACCATGTCTGAGACATTGGCATCGTT
1 ATGTGATTACGTATAACACCATGTCTGAGACATTGGCATCATT
75486213 AT
1 AT
75486215 TTAATTTCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (43 bp):
ATGTGATTACGTATAACACCATGTCTGAGACATTGGCATCATT
Found at i:75486230 original size:43 final size:43
Alignment explanation
Indices: 75486138--75486282 Score: 116
Period size: 43 Copynumber: 3.4 Consensus size: 43
75486128 TGTGATTATG
* * * * *
75486138 TGTAACACCATGTTTGGGACATTGGCATCATTATGTGATTACG
1 TGTAAGACCATGTCTGAGACATTGGCATCATTATGTAATTACA
* * * *
75486181 TATAAGACCATGTCTGAGACATTGGCATCGTTATTTAATTTCA
1 TGTAAGACCATGTCTGAGACATTGGCATCATTATGTAATTACA
* * * *
75486224 TGTAAGACCATAG-CTG-GGCTATTGCCATCGA-TATGTGATAACA
1 TGTAAGACCAT-GTCTGAGAC-ATTGGCATC-ATTATGTAATTACA
*
75486267 TGTAAGACCATATCTG
1 TGTAAGACCATGTCTG
75486283 GGATATTGCA
Statistics
Matches: 80, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
42 2 0.03
43 77 0.96
44 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGAGACATTGGCATCATTATGTAATTACA
Found at i:75487013 original size:21 final size:21
Alignment explanation
Indices: 75486989--75487037 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
75486979 AACCACATGG
75486989 CCAGGCCACACACCCATGTCT
1 CCAGGCCACACACCCATGTCT
* ** *
75487010 CCAGGCCGCATGCCCGTGTCT
1 CCAGGCCACACACCCATGTCT
75487031 CCAGGCC
1 CCAGGCC
75487038 GTGTCCCTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.16, C:0.47, G:0.22, T:0.14
Consensus pattern (21 bp):
CCAGGCCACACACCCATGTCT
Found at i:75488987 original size:46 final size:48
Alignment explanation
Indices: 75488838--75489104 Score: 232
Period size: 46 Copynumber: 5.7 Consensus size: 48
75488828 GTATAATGCT
* * * * *
75488838 GATGCCATGTCCCAGACAGGGTCTTACACTAGCTCTCACATATCCATGCC
1 GATGCCATGTCCCAGACA-TGTCTTACACTGGCTCT-ACATCTCGAGGCC
* *
75488888 GATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTA-GCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTACATCTCG-AGGCC
*
75488934 AATG-CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGAGGCC
* * * * * *
75488980 GATG-CATGTCCCAGACATGTCTAACACTAGCTCT-CGTCTCAATGTC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGAGGCC
* * * *
75489026 GATGCCATATCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTACAT-CTCGAGGCC
*
75489074 GATG-CATGTCCCAGACGTGTCTTACACTGGC
1 GATGCCATGTCCCAGACATGTCTTACACTGGC
75489105 ACACAAATAA
Statistics
Matches: 182, Mismatches: 25, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
44 10 0.05
45 16 0.09
46 75 0.41
47 27 0.15
48 24 0.13
49 2 0.01
50 28 0.15
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGAGGCC
Found at i:75489050 original size:94 final size:93
Alignment explanation
Indices: 75488835--75489107 Score: 281
Period size: 94 Copynumber: 2.9 Consensus size: 93
75488825 AGGGTATAAT
* * * *
75488835 GCTGATGCCATGTCCCAGACAGGGTCTTACACTAGCTCTCACATATCCATGCCGATGCCATGTCC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATATCGAGGCCGATG-CATGTCC
*
75488900 CAGACATGGTCTTACACTGACACATCTCGTA
64 CAGACAT-GTCTTACACTGACACATCTCATA
* *
75488931 GCTAATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCCGATGCATGTCCCA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCCA
* * * *
75488993 GACATGTCTAACACTAGCTCTCGTCTCA-A
66 GACATGTCTTACACT-G-ACACATCTCATA
* * *
75489022 TG-TCGATGCCATATCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGTCGATGCATGTC
1 -GCT-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATCGAGGCCGATGCATGTC
* *
75489084 CCAGACGTGTCTTACACTGGCACA
63 CCAGACATGTCTTACACTGACACA
75489108 CAAATAACTC
Statistics
Matches: 148, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
90 9 0.06
91 17 0.11
92 26 0.18
93 15 0.10
94 60 0.41
95 15 0.10
96 6 0.04
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (93 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCCA
GACATGTCTTACACTGACACATCTCATA
Found at i:75492542 original size:50 final size:50
Alignment explanation
Indices: 75492482--75492624 Score: 171
Period size: 50 Copynumber: 2.9 Consensus size: 50
75492472 GTTTCGATAC
* *
75492482 GTGATACCATGTAAAACCATGTCGGGGACATGGCA-TGAGCATCGATATGT
1 GTGATCCCATGTAAAACCATGTCCGGGACATGGCATTG-GCATCGATATGT
* *
75492532 GTGATCCCATGTTAAACCATGTCCGTGACATGGCATTGGCATCGATATGT
1 GTGATCCCATGTAAAACCATGTCCGGGACATGGCATTGGCATCGATATGT
* * * * ** *
75492582 GTGAACCCATGTAAGAGCATATCTAGGATATGGCATTGGCATC
1 GTGATCCCATGTAAAACCATGTCCGGGACATGGCATTGGCATC
75492625 TCACTATTTG
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
50 77 0.97
51 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (50 bp):
GTGATCCCATGTAAAACCATGTCCGGGACATGGCATTGGCATCGATATGT
Found at i:75494593 original size:50 final size:50
Alignment explanation
Indices: 75494533--75494646 Score: 158
Period size: 50 Copynumber: 2.3 Consensus size: 50
75494523 GTTTCGATAC
*
75494533 GTGATACCATGTAAAACCATG-TCGGGGACATGGCATTAGCATCGATATGT
1 GTGATCCCATGTAAAACCATGTTC-GGGACATGGCATTAGCATCGATATGT
* * * *
75494583 GTGATCCCATGTTAGACCATGTTCGTGACATGGCATTGGCATCGATATGT
1 GTGATCCCATGTAAAACCATGTTCGGGACATGGCATTAGCATCGATATGT
*
75494633 GTGAACCCATGTAA
1 GTGATCCCATGTAA
75494647 GAGCATATCT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 54 0.96
51 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (50 bp):
GTGATCCCATGTAAAACCATGTTCGGGACATGGCATTAGCATCGATATGT
Found at i:75494666 original size:50 final size:50
Alignment explanation
Indices: 75494559--75494675 Score: 155
Period size: 50 Copynumber: 2.3 Consensus size: 50
75494549 CCATGTCGGG
* * * * *
75494559 GACATGGCATTAGCATCGATATGTGTGATCCCATGTTAGACCATGTTCGT
1 GACATGGCATTGGCATCGATATGTGTGAACCCATGTAAGACCATATTAGT
*
75494609 GACATGGCATTGGCATCGATATGTGTGAACCCATGTAAGAGCATATCTAG-
1 GACATGGCATTGGCATCGATATGTGTGAACCCATGTAAGACCATAT-TAGT
*
75494659 GATATGGCATTGGCATC
1 GACATGGCATTGGCATC
75494676 TCACTATTTG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 57 0.97
51 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
GACATGGCATTGGCATCGATATGTGTGAACCCATGTAAGACCATATTAGT
Found at i:75496646 original size:50 final size:50
Alignment explanation
Indices: 75496586--75496699 Score: 156
Period size: 50 Copynumber: 2.3 Consensus size: 50
75496576 GTTTCGATAC
* *
75496586 GTGATACCATGTAAAACCAAGTCGGGGACATGGCATTAGCATCGATATGT
1 GTGATCCCATGTAAAACCAAGTCCGGGACATGGCATTAGCATCGATATGT
* * * * *
75496636 GTGATCCCATGTTAGACCATGTCCGTGACATGGCATTGGCATCGATATGT
1 GTGATCCCATGTAAAACCAAGTCCGGGACATGGCATTAGCATCGATATGT
*
75496686 GTGAACCCATGTAA
1 GTGATCCCATGTAA
75496700 GAGCATATCT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (50 bp):
GTGATCCCATGTAAAACCAAGTCCGGGACATGGCATTAGCATCGATATGT
Found at i:75496719 original size:50 final size:50
Alignment explanation
Indices: 75496612--75496728 Score: 155
Period size: 50 Copynumber: 2.3 Consensus size: 50
75496602 CCAAGTCGGG
* * * * *
75496612 GACATGGCATTAGCATCGATATGTGTGATCCCATGTTAGACCATGTCCGT
1 GACATGGCATTGGCATCGATATGTGTGAACCCATGTAAGACCATATCAGT
*
75496662 GACATGGCATTGGCATCGATATGTGTGAACCCATGTAAGAGCATATCTAG-
1 GACATGGCATTGGCATCGATATGTGTGAACCCATGTAAGACCATATC-AGT
*
75496712 GATATGGCATTGGCATC
1 GACATGGCATTGGCATC
75496729 TCACTATGTG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 58 0.98
51 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (50 bp):
GACATGGCATTGGCATCGATATGTGTGAACCCATGTAAGACCATATCAGT
Found at i:75498596 original size:19 final size:19
Alignment explanation
Indices: 75498572--75498617 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
75498562 CGGGTTTGGG
*
75498572 ACACGGGGGTGTCCCTAGC
1 ACACGGGCGTGTCCCTAGC
75498591 ACACGGGCGTGTCCCTAGC
1 ACACGGGCGTGTCCCTAGC
*
75498610 ATACGGGC
1 ACACGGGC
75498618 ATGTGCTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.17, C:0.33, G:0.35, T:0.15
Consensus pattern (19 bp):
ACACGGGCGTGTCCCTAGC
Found at i:75499802 original size:47 final size:44
Alignment explanation
Indices: 75499733--75499856 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 44
75499723 GATGATAGTC
*
75499733 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGACTTGACATGT--GCT
* * *
75499780 AGTGTAAGACTATGTCTGGGACATGGCATTGGCTTGACATGTGTT
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGACTTGACATGTGCT
* *
75499825 AGTGTAAGACCTGTCTAGGACATGGCATCGAC
1 AGTGTAAGACATGTCTGGGACATGGCATCGAC
75499857 ACAGATGGAC
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
44 18 0.26
45 12 0.18
46 1 0.01
47 37 0.54
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACTTGACATGTGCT
Found at i:75503360 original size:50 final size:50
Alignment explanation
Indices: 75503284--75503425 Score: 185
Period size: 50 Copynumber: 2.8 Consensus size: 50
75503274 ACATAGTGAG
* * * *
75503284 ATGCCAATGCCATATCGCAGATATGGTCTTACATGTGTTCACACATATCA
1 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACATATCA
* * *
75503334 ATGCCAATGCCATGTCCCAGACATGGTCTTGCATGGGATCACACATATCG
1 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACATATCA
* * * *
75503384 ATGCCAATGCCATCTCCCCGACATCGTCTTACACGGGATCAC
1 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCAC
75503426 GTATTGAAAC
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 80 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (50 bp):
ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACACATATCA
Found at i:75503946 original size:43 final size:43
Alignment explanation
Indices: 75503883--75504046 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
75503873 TCGTACAATG
* * *
75503883 CAATATCCCAGATATAGTCTTACATGTTATCACATATCGATGC
1 CAATAGCCCAGATATGGTCTTACATGTAATCACATATCGATGC
* *** * *
75503926 CAATAGCCCAGCTATGGTCTTACACAAAATTA-ATTAACGATGC
1 CAATAGCCCAGATATGGTCTTACATGTAATCACA-TATCGATGC
*
75503969 CAAT-GTCCTAGATATGGTCTTACATGTAATCACATAAT-GATGC
1 CAATAG-CCCAGATATGGTCTTACATGTAATCACAT-ATCGATGC
* * **
75504012 CAAT-GTCCCAGACATGGTGTTACACATAATCACAT
1 CAATAG-CCCAGATATGGTCTTACATGTAATCACAT
75504047 CTCATTAATA
Statistics
Matches: 96, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.02
43 92 0.96
44 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (43 bp):
CAATAGCCCAGATATGGTCTTACATGTAATCACATATCGATGC
Found at i:75508048 original size:39 final size:39
Alignment explanation
Indices: 75507937--75508121 Score: 262
Period size: 39 Copynumber: 4.7 Consensus size: 39
75507927 TGTTCAAACA
* * * * * *
75507937 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
*
75507977 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
* * *
75508017 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCATTG
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
75508056 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
75508095 CCTTCGGGCTTAGCCCGGATATCACAA
1 CCTTCGGGCTTAGCCCGGATATCACAA
75508122 TTCACACATT
Statistics
Matches: 131, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 90 0.69
40 41 0.31
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
Found at i:75517570 original size:28 final size:28
Alignment explanation
Indices: 75517538--75517627 Score: 117
Period size: 29 Copynumber: 3.1 Consensus size: 28
75517528 CACATACCTG
* *
75517538 TATATGGCCCACTAGGCCCAATCATATT
1 TATATGGCCCATTAGGCCCAATCACATT
* *
75517566 TATATGTCCCATTAGGTCCAAATCACATT
1 TATATGGCCCATTAGG-CCCAATCACATT
*
75517595 TATATAGCCCATTAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAA-TCACATT
75517624 TATA
1 TATA
75517628 GTCATGCTCA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 18 0.34
29 35 0.66
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACATT
Found at i:75517865 original size:16 final size:17
Alignment explanation
Indices: 75517846--75517881 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
75517836 AACTTTCAGC
75517846 TTTTTGGCATTTCGA-T
1 TTTTTGGCATTTCGACT
75517862 TTTTTGGCATTTCGACT
1 TTTTTGGCATTTCGACT
75517879 TTT
1 TTT
75517882 GCCGATCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.11, C:0.14, G:0.17, T:0.58
Consensus pattern (17 bp):
TTTTTGGCATTTCGACT
Found at i:75526387 original size:39 final size:39
Alignment explanation
Indices: 75526288--75526510 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 39
75526278 CGAATGATGA
* *
75526288 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
* **
75526328 CCGGACTAAGAT-TGGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
75526367 CCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
75526406 CCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACCAAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAT
*
75526446 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC--TAAT
*
75526487 -CGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75526511 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
39 68 0.43
40 79 0.50
41 11 0.07
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:75526533 original size:79 final size:78
Alignment explanation
Indices: 75526355--75526517 Score: 188
Period size: 79 Copynumber: 2.1 Consensus size: 78
75526345 GGCATTTGTG
* *
75526355 CGAGTTA-CTAATCCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAATCCCGAGCTAAGC
1 CGAGTTACCAAAT-CCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAT-CCGAGCTAAGC
**
75526418 CCGAAGGCATTGGTG
64 CCGAAGGCATTGGAA
* * *
75526433 CGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGT
1 CGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTAC--TAATCCGAGCTAAG-
*
75526497 CCCGAAGGCATTTGAA
63 CCCGAAGGCATTGGAA
75526513 CGAGT
1 CGAGT
75526518 AGCTATATCC
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 16 0.22
79 34 0.47
80 18 0.25
81 4 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (78 bp):
CGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAATCCGAGCTAAGCCC
GAAGGCATTGGAA
Found at i:75526541 original size:79 final size:78
Alignment explanation
Indices: 75526378--75526543 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 78
75526368 CCGGGCTAAG
**
75526378 CCCGAAGGCATTGGTGCGAGTTACTAATCCCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACCA
1 CCCGAAGGCATTGGTGCGAGTTACTAAT-CCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACCA
*
75526443 AATCCGGGTTAAGT
65 AATCCGGGTTAAAT
* * * *
75526457 CCCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 CCCGAAGGCATTGGTGCGAGTTAC--TAATCCGAGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
* *
75526520 CTATATCC-GGTTAAAT
62 CCAAATCCGGGTTAAAT
*
75526536 TCCGAAGG
1 CCCGAAGG
75526544 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
79 46 0.63
80 23 0.32
81 4 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
CCCGAAGGCATTGGTGCGAGTTACTAATCCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACCAA
ATCCGGGTTAAAT
Found at i:75534595 original size:39 final size:39
Alignment explanation
Indices: 75534496--75534718 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
75534486 CGAATGATGA
* *
75534496 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
* *
75534536 CCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
75534575 CCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
75534614 CCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACCAAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAT
* *
75534654 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
*
75534694 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75534719 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 73 0.45
40 81 0.50
41 8 0.05
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:75534672 original size:79 final size:79
Alignment explanation
Indices: 75534496--75534716 Score: 261
Period size: 79 Copynumber: 2.8 Consensus size: 79
75534486 CGAATGATGA
* * * * * *
75534496 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCAGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-ATCCGGGCTAAGACCCGAAGGCATTG
*
75534560 GTGCGAGTTACTAATC
64 GTGCGAGTTACAAATC
*
75534576 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAATCCCGGGCTAAG-CCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-CCGGGCTAAGACCCGAAGGCATTGG
75534639 TGCGAGTTACCAAAT-
65 TGCGAGTTA-CAAATC
* * * *
75534654 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAGACCCGAAGGCATT
75534717 TGAACGAGTA
Statistics
Matches: 123, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
78 32 0.26
79 62 0.50
80 29 0.24
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGACCCGAAGGCATTGGT
GCGAGTTACAAATC
Found at i:75534749 original size:79 final size:79
Alignment explanation
Indices: 75534586--75534751 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
75534576 CCGGGCTAAG
* **
75534586 CCCGAAGGCATTGGTGCGAGTTACTAATCCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACCA
1 CCCGAAGGCATTGGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACCA
*
75534651 AATCCGGGTTAAGT
66 AATCCGGGTTAAAT
* * *
75534665 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 CCCGAAGGCATTGGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
* *
75534728 CTATATCC-GGTTAAAT
63 CCAAATCCGGGTTAAAT
*
75534744 TCCGAAGG
1 CCCGAAGG
75534752 TACGTGATTC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.66
80 23 0.31
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
CCCGAAGGCATTGGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACCA
AATCCGGGTTAAAT
Found at i:75537978 original size:49 final size:50
Alignment explanation
Indices: 75537902--75538062 Score: 225
Period size: 52 Copynumber: 3.2 Consensus size: 50
75537892 CTCAAGTGTT
*
75537902 GTACTATGTGAAGGCCACTTTGAGAAG-AGATAGCTTGGTCACAAGGGTG
1 GTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTGGTCACAAGGGTG
* *
75537951 GTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGTGTC
1 GTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGC-TTGGTCACAAGGGTG
* * * *
75538003 GTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGACTACAAGGGAG
1 GTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTGGTC-ACAAGGGTG
75538054 GTACTATGT
1 GTACTATGT
75538063 TCTGGCCACC
Statistics
Matches: 99, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 26 0.26
50 4 0.04
51 29 0.29
52 40 0.40
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (50 bp):
GTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTGGTCACAAGGGTG
Found at i:75538014 original size:52 final size:51
Alignment explanation
Indices: 75537894--75538041 Score: 228
Period size: 52 Copynumber: 2.9 Consensus size: 51
75537884 ACTAGTGACT
* *
75537894 CAAGTGTTGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
* *
75537943 CAAGGGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
*
75537995 CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTG
1 CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTG
75538042 ACTACAAGGG
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
49 32 0.36
51 18 0.20
52 40 0.44
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (51 bp):
CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:75544552 original size:49 final size:51
Alignment explanation
Indices: 75544494--75544633 Score: 169
Period size: 49 Copynumber: 2.8 Consensus size: 51
75544484 AAGGTGGAAG
75544494 CAGTGGCAGTATATATGCAAATCAGTGGTGGCTTGTCCACAAAA-T-TTAAT
1 CAGTGGCAGTATATATGCAAATCAGTGGTGGCTTGTCCACAAAAGTGTT-AT
* * * * * *
75544544 -AGTGGCAGTATATTTGCATATCAATGGTGGATCGTCCATAAAAGTGTTAT
1 CAGTGGCAGTATATATGCAAATCAGTGGTGGCTTGTCCACAAAAGTGTTAT
* * *
75544594 CAGTGGCAATTTATCTGCAAATCAGTGGTGGCTTGTCCAC
1 CAGTGGCAGTATATATGCAAATCAGTGGTGGCTTGTCCAC
75544634 TAATGGTGTT
Statistics
Matches: 73, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
49 37 0.51
50 3 0.04
51 33 0.45
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (51 bp):
CAGTGGCAGTATATATGCAAATCAGTGGTGGCTTGTCCACAAAAGTGTTAT
Found at i:75568235 original size:29 final size:29
Alignment explanation
Indices: 75568208--75568479 Score: 201
Period size: 29 Copynumber: 9.4 Consensus size: 29
75568198 ATTGTAACCG
*
75568208 TCCCTTTTCATATTCGATGGTCGAAACCA
1 TCCCTTTTCATATTCGATGGTCGAAACTA
* ** *
75568237 TCCCTTTTCATTAATT-AATGGTCGTCACGA
1 TCCCTTTTCA-T-ATTCGATGGTCGAAACTA
* * * *
75568267 TCCCTTTTCATAATCGATAGTTGAAGCTA
1 TCCCTTTTCATATTCGATGGTCGAAACTA
* ** * *
75568296 TCCTTTTTCATATTCGATACTCCAAGCTA
1 TCCCTTTTCATATTCGATGGTCGAAACTA
* * * **
75568325 TTCTTTTTCATATTCGATGGTTGTCACTA
1 TCCCTTTTCATATTCGATGGTCGAAACTA
* * *
75568354 TCCCTTTTTATAGTT-GATGGTC-ATCACCA
1 TCCCTTTTCATA-TTCGATGGTCGA-AACTA
* * * *
75568383 TCCCTTTTCACATTCGATAGCCGAATCTA
1 TCCCTTTTCATATTCGATGGTCGAAACTA
* *
75568412 TCCCTTTCCATATTCGATGGTCGAAGCTA
1 TCCCTTTTCATATTCGATGGTCGAAACTA
* * *
75568441 TCCCTTTTCATATTCGATAG-CCAAGCTA
1 TCCCTTTTCATATTCGATGGTCGAAACTA
75568469 TCCCTTTTCAT
1 TCCCTTTTCAT
75568480 TGGTCGATGA
Statistics
Matches: 190, Mismatches: 46, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
28 22 0.12
29 141 0.74
30 24 0.13
31 3 0.02
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (29 bp):
TCCCTTTTCATATTCGATGGTCGAAACTA
Found at i:75568260 original size:30 final size:30
Alignment explanation
Indices: 75568203--75568277 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
75568193 CGATGATTGT
* *
75568203 AACCGTCCCTTTTCA-TATTCGATGGTCGA
1 AACCATCCCTTTTCATTATTCAATGGTCGA
*
75568232 AACCATCCCTTTTCATTAATT-AATGGTCGT
1 AACCATCCCTTTTCATT-ATTCAATGGTCGA
* *
75568262 CACGATCCCTTTTCAT
1 AACCATCCCTTTTCAT
75568278 AATCGATAGT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
29 14 0.36
30 22 0.56
31 3 0.08
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.37
Consensus pattern (30 bp):
AACCATCCCTTTTCATTATTCAATGGTCGA
Found at i:75572450 original size:32 final size:32
Alignment explanation
Indices: 75572353--75572507 Score: 168
Period size: 32 Copynumber: 4.8 Consensus size: 32
75572343 ATGGCACAAT
*
75572353 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
1 TTGAAAAGGTTATGTACACTTTGTGTATACAC
* * * *
75572385 CTAAAAAGGTTATGTACACTTTGTGTGTTCAC
1 TTGAAAAGGTTATGTACACTTTGTGTATACAC
75572417 TTGAAAAGGTTATGTACACTTTGTGTATACAC
1 TTGAAAAGGTTATGTACACTTTGTGTATACAC
* * * **
75572449 TTGGAAAGGCTAGGTGTACTTTGTGTATAC-C
1 TTGAAAAGGTTATGTACACTTTGTGTATACAC
** *
75572480 ATATGAAAAGGAAAGGTACACTTTGTGT
1 -T-TGAAAAGGTTATGTACACTTTGTGT
75572508 GTACCACTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
31 1 0.01
32 83 0.80
33 20 0.19
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35
Consensus pattern (32 bp):
TTGAAAAGGTTATGTACACTTTGTGTATACAC
Found at i:75579322 original size:43 final size:42
Alignment explanation
Indices: 75579271--75579418 Score: 181
Period size: 43 Copynumber: 3.5 Consensus size: 42
75579261 TATCCTAGAT
* * *
75579271 ATGGTCTTACATGTTATCACATATCGATGCCAATGTCCTAGAC
1 ATGGTCTTACACGTAATCA-ATATCGATGCCAATGTCCCAGAC
* * *
75579314 ATGTTCTTACACGAAATCATATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCA-ATATCGATGCCAATGTCCCAGAC
75579357 ATGGTCTTACACGTAATCGTAATATC-ATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATC--AATATCGATGCCAATGTCCCAGAC
* *
75579400 ATGGTTTTACACATAATCA
1 ATGGTCTTACACGTAATCA
75579419 CATTTCGTTA
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.01
43 85 0.93
44 4 0.04
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCAATATCGATGCCAATGTCCCAGAC
Found at i:75589562 original size:93 final size:93
Alignment explanation
Indices: 75589450--75589620 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75589440 GCCCATAAGT
* *
75589450 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75589515 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75589543 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75589608 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75589621 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75589617 original size:46 final size:46
Alignment explanation
Indices: 75589442--75589617 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
75589432 TGTAACCCGC
* * *
75589442 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75589488 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
75589538 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75589581 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75589618 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75592032 original size:30 final size:30
Alignment explanation
Indices: 75591988--75592076 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
75591978 CAAAGATAAC
75591988 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
75592017 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
75592047 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
75592077 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:75592036 original size:15 final size:15
Alignment explanation
Indices: 75591988--75592067 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
75591978 CAAAGATAAC
*
75591988 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
75592002 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
75592017 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
75592032 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
75592047 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
75592062 AAGAAA
1 AAGAAA
75592068 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:75592076 original size:15 final size:15
Alignment explanation
Indices: 75591999--75592076 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
75591989 AGAAAACCGA
75591999 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
75592014 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
75592028 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
75592043 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
75592059 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
75592074 ATA
1 ATA
75592077 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:75595139 original size:93 final size:93
Alignment explanation
Indices: 75595027--75595197 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75595017 GCCCATAAGT
* *
75595027 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75595092 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75595120 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75595185 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75595198 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75595194 original size:46 final size:46
Alignment explanation
Indices: 75595019--75595194 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
75595009 TGTAACCCGC
* * *
75595019 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75595065 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
75595115 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75595158 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75595195 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75601324 original size:17 final size:17
Alignment explanation
Indices: 75601281--75601318 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
75601271 GTTAAATTAC
*
75601281 TATTACATGATTTAATA
1 TATTAAATGATTTAATA
75601298 TATTAAATGATTTAATA
1 TATTAAATGATTTAATA
75601315 TATT
1 TATT
75601319 CGATGAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (17 bp):
TATTAAATGATTTAATA
Found at i:75603369 original size:40 final size:40
Alignment explanation
Indices: 75603312--75603454 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 40
75603302 GCTCGATTGT
* * * * *
75603312 CTTCGGGACCTAGCCCGGTTATAGTGATTCACACGATTGC
1 CTTCGGGTCTTAGCCCGGATATAGTAATTCACACGAATGC
* * *
75603352 CTTCGGGTCTTAACCCGGATTTGGTAACTTGCACA--AATGC
1 CTTCGGGTCTTAGCCCGGATATAGTAA-TT-CACACGAATGC
** * *
75603392 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTAATTCACACGAATGC
75603432 CTTCGGGTCTTAGCCCGGATATA
1 CTTCGGGTCTTAGCCCGGATATA
75603455 ACTACTAGCA
Statistics
Matches: 84, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
38 3 0.04
39 1 0.01
40 74 0.88
41 2 0.02
42 4 0.05
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTAATTCACACGAATGC
Found at i:75603455 original size:40 final size:40
Alignment explanation
Indices: 75603343--75603493 Score: 178
Period size: 40 Copynumber: 3.8 Consensus size: 40
75603333 TAGTGATTCA
* * * *** *
75603343 CACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTG
1 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTAG
* *
75603383 CACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCG
1 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTAG
*
75603423 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACTACTAG
1 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTAG
* *
75603463 CA-TAATTGCCTTCGGGACTTAGCCCGGATAT
1 CACGAA-TGCCTTCGGGTCTTAGCCCGGATAT
75603494 CATTCCAATG
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
39 2 0.02
40 95 0.98
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTAG
Found at i:75603473 original size:80 final size:80
Alignment explanation
Indices: 75603343--75603493 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
75603333 TAGTGATTCA
* *** * *
75603343 CACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCC
1 CACGAATGCCTTCGGGTCTTAACCCGGATTAACTAACTAGCACAAATGCCTTCGGGACTTAGCCC
75603408 GGATATAACAACTCG
66 GGATATAACAACTCG
* * *
75603423 CACGAATGCCTTCGGGTCTTAGCCCGGATATAACT-ACTAGCATAATTGCCTTCGGGACTTAGCC
1 CACGAATGCCTTCGGGTCTTAACCCGGAT-TAACTAACTAGCACAAATGCCTTCGGGACTTAGCC
75603487 CGGATAT
65 CGGATAT
75603494 CATTCCAATG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 59 0.97
81 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
CACGAATGCCTTCGGGTCTTAACCCGGATTAACTAACTAGCACAAATGCCTTCGGGACTTAGCCC
GGATATAACAACTCG
Found at i:75607619 original size:39 final size:40
Alignment explanation
Indices: 75607565--75607741 Score: 141
Period size: 40 Copynumber: 4.5 Consensus size: 40
75607555 GAATCACGTA
* * *
75607565 CCTTCGGGAT-TTA-ACCGGATTTAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAGACCGGATATAACAACTAGCACAATTG
* *** *
75607604 CCTTCGGGTCTTA-ACCCGGATTTGGTAACTTGCACAATTG
1 CCTTCGGGTCTTAGA-CCGGATATAACAACTAGCACAATTG
* *
75607644 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAGACCGGATATAACAACTAGCAC-AATTG
* * *
75607684 CCTTCGGGTC-TAGCCCGGATATAATC-ACTAGCATAAATG
1 CCTTCGGGTCTTAGACCGGATATAA-CAACTAGCACAATTG
* *
75607723 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAGACCGG
75607742 GTATCATTCA
Statistics
Matches: 116, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 3 0.03
39 43 0.37
40 68 0.59
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAGACCGGATATAACAACTAGCACAATTG
Found at i:75607639 original size:40 final size:40
Alignment explanation
Indices: 75607595--75607741 Score: 165
Period size: 40 Copynumber: 3.7 Consensus size: 40
75607585 TTAACCACAA
* * *** *
75607595 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
75607635 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
*
75607675 GCACGAA-TGCCTTCGGGTC-TAGCCCGGATATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
75607714 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
75607742 GTATCATTCA
Statistics
Matches: 94, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.33
40 59 0.63
41 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:75615709 original size:40 final size:40
Alignment explanation
Indices: 75615665--75615812 Score: 165
Period size: 40 Copynumber: 3.7 Consensus size: 40
75615655 TTAACCACAA
* * *** *
75615665 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
75615705 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
75615745 GCACGAA-TGCCTTCGGGTCATAGCCCGGATATAATC-ACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * *
75615785 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCACAATTGCCTTCGGGTCTTAGCCCGG
75615813 GTATCATTCA
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:75619019 original size:55 final size:54
Alignment explanation
Indices: 75618890--75619086 Score: 247
Period size: 55 Copynumber: 3.6 Consensus size: 54
75618880 TTGGTAAGAT
* * * * *
75618890 AAGGATATCATGTAAGACCATGCCAAGGCATAGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
75618944 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
75618999 AAAGG-TCCCATGTAAGACCATGAT-AAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATG-TCAAGACATGGCATTGATGAGTTCTATAAGGC
*
75619052 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
75619087 ATCGTAAGTT
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
52 5 0.04
53 32 0.26
54 41 0.33
55 42 0.34
56 5 0.04
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:75619221 original size:16 final size:16
Alignment explanation
Indices: 75619199--75619237 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
75619189 GCTTAATTCA
*
75619199 TATTGAGATTGT-AAG
1 TATTGAGATTATCAAG
75619214 TAATTGAGATTATCAAG
1 T-ATTGAGATTATCAAG
75619231 TATTGAG
1 TATTGAG
75619238 TAAGTGATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 16 0.76
17 4 0.19
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (16 bp):
TATTGAGATTATCAAG
Found at i:75627678 original size:16 final size:17
Alignment explanation
Indices: 75627657--75627691 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
75627647 AAGTATTATG
75627657 AAATAAA-AACAAACAA
1 AAATAAACAACAAACAA
*
75627673 AAATAAACATCAAACAA
1 AAATAAACAACAAACAA
75627690 AA
1 AA
75627692 GTCGTCCCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.77, C:0.14, G:0.00, T:0.09
Consensus pattern (17 bp):
AAATAAACAACAAACAA
Found at i:75629239 original size:40 final size:40
Alignment explanation
Indices: 75629181--75629348 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
75629171 TCCTCGGGAT
* *
75629181 TTAG-CCGGATATAACAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
75629220 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCAGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
75629260 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * *
75629300 ATAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
75629340 TTAGTCCGG
1 TTAGCCCGG
75629349 TTATCATCCG
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.06
40 101 0.93
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:75629318 original size:80 final size:79
Alignment explanation
Indices: 75629177--75629348 Score: 242
Period size: 80 Copynumber: 2.2 Consensus size: 79
75629167 AGTATCCTCG
* * *
75629177 GGAT-TTAGCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
1 GGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAACTC
75629241 GCACAAATGCCTTC
66 GCACAAATGCCTTC
*
75629255 AGG-TCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCAA
1 -GGATCTTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAA
*
75629318 CTCGCACGAATGCCTTC
63 CTCGCACAAATGCCTTC
75629335 GGATCTTAGTCCGG
1 GGATCTTAG-CCGG
75629349 TTATCATCCG
Statistics
Matches: 83, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
78 1 0.01
79 8 0.10
80 73 0.88
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (79 bp):
GGATCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAACTC
GCACAAATGCCTTC
Found at i:75632130 original size:40 final size:39
Alignment explanation
Indices: 75632066--75632233 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 39
75632056 TCTTCAGAAT
* **
75632066 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** *
75632105 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
*
75632145 TTAGCCCAGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * *
75632185 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCGGGTC
75632225 TTAGCCCGG
1 TTAGCCCGG
75632234 GTATCATTCA
Statistics
Matches: 105, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 99 0.94
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:75636389 original size:40 final size:40
Alignment explanation
Indices: 75636344--75636473 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75636334 CGGAATACAA
75636344 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
75636384 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
75636424 CCGGATGTAGCCGCTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAAT-GCCTTCGGGTCTTAGC
75636464 CCGGATATAA
1 CCGGATATAA
75636474 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:75639078 original size:22 final size:22
Alignment explanation
Indices: 75639053--75639096 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
75639043 GAAATTTGTG
* *
75639053 AAAATTTATTATAAAAATAATT
1 AAAATTCAATATAAAAATAATT
*
75639075 AAAATTCAATATATAAATAATT
1 AAAATTCAATATAAAAATAATT
75639097 TAAGTCCAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTCAATATAAAAATAATT
Found at i:75640085 original size:46 final size:46
Alignment explanation
Indices: 75640011--75640267 Score: 295
Period size: 46 Copynumber: 5.6 Consensus size: 46
75640001 CTCGGCTTGA
* * *
75640011 TGCCATAGTGTCTTTCAACCATGATCTTATTCATTTTCTGTCATGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCTATCATGT
* * * *
75640057 TTCAATTA-TGTCTTTCAAATATGGTCTTATTCATTTTCCATCATGT
1 TGCCA-TAGTGTCTTTCAACTATGGTCTTATTCATTTTCTATCATGT
* * *
75640103 TGCCATAGTGTCTTTCAACTATGGTCCTATTAATTTACTATCATGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCTATCATGT
* * * *
75640149 TGTCATAGTGTCTTTCAACTATGGTCCTATTCATTTTTTGTCATG-
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCTATCATGT
** ** *
75640194 TGCCATAGTGTCTTTCAACTATGGTCTTATTTGTTTGAT-TCATGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCTATCATGT
* *
75640239 TGCCATAGCGTCTTTCAGCTATGGTCTTA
1 TGCCATAGTGTCTTTCAACTATGGTCTTA
75640268 CTCGATAGGA
Statistics
Matches: 181, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
44 5 0.03
45 62 0.34
46 112 0.62
47 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCTATCATGT
Found at i:75640216 original size:45 final size:46
Alignment explanation
Indices: 75640011--75640409 Score: 312
Period size: 45 Copynumber: 8.8 Consensus size: 46
75640001 CTCGGCTTGA
* * *
75640011 TGCCATAGTGTCTTTCAACCATGATCTTATTCATTTTCTGTCATGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTTTGTCATGT
* * * ***
75640057 TTCAATTA-TGTCTTTCAAATATGGTCTTATTCATTTTCCATCATGT
1 TGCCA-TAGTGTCTTTCAACTATGGTCTTATTCATTTTTTGTCATGT
* * ** *
75640103 TGCCATAGTGTCTTTCAACTATGGTCCTATTAATTTACTATCATGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTTTGTCATGT
* *
75640149 TGTCATAGTGTCTTTCAACTATGGTCCTATTCATTTTTTGTCATG-
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTTTGTCATGT
** ** *
75640194 TGCCATAGTGTCTTTCAACTATGGTCTTATTTGTTTGAT-TCATGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTTTGTCATGT
* * * *** *
75640239 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCGATAGGATTGTTATG-
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTC-AT-TTTTTGTCATGT
* * * * * * * * *
75640286 T--CATAATGTCTTTTAGCCATGGTCTCACTCGTTTTTGGT-ATGG
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTTTGTCATGT
* *
75640329 TGCCATAGTGTCTTTCAACTCTGGTCTTATTTATTTTTTGT-ATAG-
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTTTGTCAT-GT
* * * *
75640374 TACCATAGTGTCTGTCAACTATGGTCATAATCATTT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTT
75640410 CCTTCAAGCC
Statistics
Matches: 282, Mismatches: 61, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
42 3 0.01
43 4 0.01
44 6 0.02
45 147 0.52
46 114 0.40
47 4 0.01
48 4 0.01
ACGTcount: A:0.21, C:0.18, G:0.16, T:0.45
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTTTGTCATGT
Found at i:75641036 original size:21 final size:24
Alignment explanation
Indices: 75641010--75641054 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
75641000 GCTAATATGA
*
75641010 TAAAAA-A-AATATAAAAA-ATAC
1 TAAAAATAGAATAGAAAAATATAC
75641031 TAAAAATAGAATAGAAAAATATAC
1 TAAAAATAGAATAGAAAAATATAC
75641055 CATACAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 1 0.05
23 9 0.45
24 4 0.20
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.20
Consensus pattern (24 bp):
TAAAAATAGAATAGAAAAATATAC
Found at i:75647240 original size:28 final size:29
Alignment explanation
Indices: 75647208--75647321 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
75647198 TACCTGTATG
* *
75647208 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
75647236 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
75647265 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
** *
75647294 TGGCCTGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
75647322 GTCATGCTCA
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 26 0.35
29 48 0.64
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:75647271 original size:57 final size:58
Alignment explanation
Indices: 75647199--75647309 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
75647189 AATTTCACAT
* * *
75647199 ACCTGTATGTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * **
75647256 ACCTATATATGGCCCATTAGGCCCAAATCACATTTATATGGCCTGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
75647310 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 21 0.46
58 25 0.54
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:75647403 original size:17 final size:18
Alignment explanation
Indices: 75647381--75647414 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75647371 TTCCTATTAT
75647381 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
75647398 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
75647415 TCTGACCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:75654298 original size:16 final size:18
Alignment explanation
Indices: 75654262--75654313 Score: 65
Period size: 16 Copynumber: 3.1 Consensus size: 18
75654252 TTATCCTAAT
*
75654262 CAAATCAAGAAAAAGAAA
1 CAAATAAAGAAAAAGAAA
75654280 CAAATAAAG-AAAA-AAA
1 CAAATAAAGAAAAAGAAA
*
75654296 CAAATAGA-AAAAAGAAA
1 CAAATAAAGAAAAAGAAA
75654313 C
1 C
75654314 TCATGCAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 14 0.47
17 8 0.27
18 8 0.27
ACGTcount: A:0.75, C:0.10, G:0.10, T:0.06
Consensus pattern (18 bp):
CAAATAAAGAAAAAGAAA
Found at i:75657637 original size:39 final size:39
Alignment explanation
Indices: 75657594--75657731 Score: 186
Period size: 39 Copynumber: 3.5 Consensus size: 39
75657584 ATTCACTTTT
* * * *
75657594 AAGCATATATCACATTACACATATAATCACTTAACATAC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * *
75657633 AAGCATATATCACAATACTTAAATAATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * *
75657672 AAGCATATATCAAAATACTCGTATAATCTCATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
75657711 AAGCATATATCACAATACTCA
1 AAGCATATATCACAATACTCA
75657732 AAAGCATCTT
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.46, C:0.21, G:0.04, T:0.29
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:75661596 original size:5 final size:5
Alignment explanation
Indices: 75661588--75661615 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
75661578 ATCCATATTC
75661588 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
75661616 TAACACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:75667842 original size:48 final size:50
Alignment explanation
Indices: 75667758--75667863 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 50
75667748 ACATAATAGG
* * * *
75667758 ATGCCAATGCCATATCCCAGATATGTTCTTAAATGGGATCA-CATATC-A
1 ATGCCAATGACATATCCAAGACATGGTCTTAAATGGGATCAGCATATCGA
* **
75667806 ATGCCAATGACATGTCCAAGACATGGTCTTCCATGGGATCATGCATATCGA
1 ATGCCAATGACATATCCAAGACATGGTCTTAAATGGGATCA-GCATATCGA
75667857 A-GCCAAT
1 ATGCCAAT
75667864 AGCCAAGCTA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
48 34 0.71
50 12 0.25
51 2 0.04
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (50 bp):
ATGCCAATGACATATCCAAGACATGGTCTTAAATGGGATCAGCATATCGA
Found at i:75667971 original size:48 final size:48
Alignment explanation
Indices: 75667898--75667990 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
75667888 GTCTCATATT
* * * *
75667898 GATGCCAATGCCATGTCCCATACATGGTATTAGATGAGATCACATTTC
1 GATGCCAACGCCATGTCCCAGACATGATATTACATGAGATCACATTTC
*
75667946 GATGCCAACGCCATGTCCCAGACATGATCTTACATGAGATCACAT
1 GATGCCAACGCCATGTCCCAGACATGATATTACATGAGATCACAT
75667991 GCGTGTCACA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (48 bp):
GATGCCAACGCCATGTCCCAGACATGATATTACATGAGATCACATTTC
Found at i:75687862 original size:47 final size:47
Alignment explanation
Indices: 75687810--75687995 Score: 363
Period size: 47 Copynumber: 4.0 Consensus size: 47
75687800 GTACAAGATA
75687810 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
*
75687857 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTA
1 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
75687904 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
75687951 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAG
1 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAG
75687996 AAGAAGAATT
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 137 1.00
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.25
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
Found at i:75688327 original size:47 final size:48
Alignment explanation
Indices: 75688254--75688379 Score: 195
Period size: 47 Copynumber: 2.7 Consensus size: 48
75688244 GGTATTTTAC
*
75688254 ATGA-GAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAA-G
1 ATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
*
75688300 ATGATGAATGTGAAAGTCTATATATGTGATAAGGCCGAATGGCCAATG
1 ATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
75688348 -TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGATGAATGTGAAAGTGTATATATGTGATAAG
75688380 TCCCGAAGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
46 4 0.05
47 68 0.93
48 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.27
Consensus pattern (48 bp):
ATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:75690978 original size:40 final size:40
Alignment explanation
Indices: 75690661--75690966 Score: 345
Period size: 40 Copynumber: 7.7 Consensus size: 40
75690651 TATTCGAATG
* *
75690661 ATATCCGGGCTAAGTCCCGAAG-GCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA-GTGA-T
* * * *
75690702 ATAACCGGACTAAGAT-CCGAAG-GCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAG-TGAT
** *
75690742 ATATCCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-T
* * * * *
75690782 ATGTCCGGGCTAAGACCCGAAG-GCCTT-GTGCAAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT-GAT
75690821 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
*
75690861 GTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
* * *
75690901 ATATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
*
75690941 ATATCCGGGCTAGGTCCCGAAGAGCA
1 ATATCCGGGCTAAGTCCCGAAGAGCA
75690967 ATCATGCTGG
Statistics
Matches: 226, Mismatches: 32, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
39 29 0.13
40 160 0.71
41 36 0.16
42 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
Found at i:75694520 original size:47 final size:47
Alignment explanation
Indices: 75694468--75694764 Score: 522
Period size: 47 Copynumber: 6.3 Consensus size: 47
75694458 GTACAAGATA
75694468 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
*
75694515 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTA
1 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
75694562 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
*
75694609 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
* *
75694656 TATATATGTGATAAGGCCGAGTGGCCAAGGTGATGAATGTGAAAGTC
1 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
* * *
75694703 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
*
75694750 TATAAATGTGATAAG
1 TATATATGTGATAAG
75694765 TCCCGAAGGG
Statistics
Matches: 240, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 240 1.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG
Found at i:75699120 original size:34 final size:34
Alignment explanation
Indices: 75699051--75699124 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
75699041 GATATGGCAC
* *
75699051 ATTACTGAAATGGGCTAAGGCCTAGACTGTCACT
1 ATTACTGAAATGGGCTAAGGCCCAGACTCTCACT
*
75699085 ATTACTGAAATGGGCTAAGGCCCGGACTACT-ACT
1 ATTACTGAAATGGGCTAAGGCCCAGACT-CTCACT
75699119 ATTACT
1 ATTACT
75699125 AAAAAAGTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (34 bp):
ATTACTGAAATGGGCTAAGGCCCAGACTCTCACT
Found at i:75710267 original size:49 final size:49
Alignment explanation
Indices: 75710140--75710496 Score: 623
Period size: 49 Copynumber: 7.4 Consensus size: 49
75710130 CCCTTCGGGA
* *
75710140 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75710187 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75710234 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75710283 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75710332 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75710381 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75710430 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75710479 CTTATCACATATATATAC
1 CTTATCACATATATATAC
75710497 CTCATACAAA
Statistics
Matches: 296, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 47 0.16
49 248 0.84
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75714086 original size:40 final size:40
Alignment explanation
Indices: 75714029--75714267 Score: 430
Period size: 40 Copynumber: 6.0 Consensus size: 40
75714019 CGAATACACG
* * *
75714029 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
75714069 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
75714108 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
75714148 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
75714188 TCACTAGCA-GAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
75714227 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
75714266 TC
1 TC
75714268 GTCGAGACTT
Statistics
Matches: 194, Mismatches: 3, Indels: 5
0.96 0.01 0.02
Matches are distributed among these distances:
39 82 0.42
40 112 0.58
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:75714165 original size:79 final size:80
Alignment explanation
Indices: 75714029--75714267 Score: 430
Period size: 79 Copynumber: 3.0 Consensus size: 80
75714019 CGAATACACG
* * *
75714029 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
75714094 CTTAG-CCGGATACA
66 CTTAGCCCGGATACA
75714108 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
75714173 CTTAGCCCGGATACA
66 CTTAGCCCGGATACA
75714188 TCACTAGCA-GAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
75714252 CTTAGCCCGGAT-CA
66 CTTAGCCCGGATACA
75714266 TC
1 TC
75714268 GTCGAGACTT
Statistics
Matches: 156, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
78 4 0.03
79 134 0.86
80 18 0.12
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCGGATACA
Found at i:75714245 original size:119 final size:118
Alignment explanation
Indices: 75714029--75714267 Score: 426
Period size: 119 Copynumber: 2.0 Consensus size: 118
75714019 CGAATACACG
*
75714029 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
75714094 CTTAGCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
66 CTTAGCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
* *
75714148 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCA-GAATGCTCTTCGGGA
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
75714212 CTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATCA
66 CTTAG-CCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATCA
75714266 TC
1 TC
75714268 GTCGAGACTT
Statistics
Matches: 116, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
118 24 0.21
119 92 0.79
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (118 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATCA
Found at i:75714390 original size:38 final size:38
Alignment explanation
Indices: 75714321--75714395 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
75714311 GAATTTTAAT
*
75714321 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* * * *
75714359 CCGGACATAATTTCT-TCATATAGTCAGCGGGTTTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
75714396 AACTCGGATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:75716623 original size:47 final size:47
Alignment explanation
Indices: 75716560--75716813 Score: 427
Period size: 47 Copynumber: 5.3 Consensus size: 47
75716550 CCCTTCGGGA
* * *
75716560 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75716607 CCTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75716654 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75716701 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75716750 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
75716799 CTTATCACATATATA
1 CTTATCACATATATA
75716814 TACCTCATAA
Statistics
Matches: 196, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
47 102 0.52
49 94 0.48
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75716734 original size:49 final size:49
Alignment explanation
Indices: 75716560--75716816 Score: 427
Period size: 49 Copynumber: 5.4 Consensus size: 49
75716550 CCCTTCGGGA
* *
75716560 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75716607 CCTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75716654 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75716701 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75716750 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75716799 CTTATCACATATATATAC
1 CTTATCACATATATATAC
75716817 CTCATAAAAT
Statistics
Matches: 198, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.01
47 93 0.47
49 104 0.53
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75716757 original size:96 final size:96
Alignment explanation
Indices: 75716560--75716816 Score: 437
Period size: 96 Copynumber: 2.7 Consensus size: 96
75716550 CCCTTCGGGA
* * * *
75716560 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
75716623 ACCTTCACATTCATCACATCGGCCATTAGGC
66 ACCTTCACATTCATCACATCGGCCATTAGGC
75716654 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
75716719 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACCTTCACATTCATCACATCGGCCATTAGGC
75716750 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
75716815 AC
64 AC
75716817 CTCATAAAAT
Statistics
Matches: 154, Mismatches: 5, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
94 51 0.33
96 52 0.34
98 51 0.33
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACCTTCACATTCATCACATCGGCCATTAGGC
Found at i:75724054 original size:14 final size:14
Alignment explanation
Indices: 75724031--75724065 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
75724021 CCAATTTGTG
75724031 AAAA-AAAATAAAT
1 AAAATAAAATAAAT
*
75724044 AGAATAAAATAAAT
1 AAAATAAAATAAAT
75724058 AAAATAAA
1 AAAATAAA
75724066 GAACACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 3 0.16
14 16 0.84
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:75724894 original size:40 final size:40
Alignment explanation
Indices: 75724788--75724916 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
75724778 ATGCTGGAAA
* *
75724788 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-G
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG
* *
75724827 ACTACATCC-GGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 -TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
* * * *
75724867 TTCTATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
75724907 TTATATCCGG
1 TTATATCCGG
75724917 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
38 3 0.04
39 28 0.37
40 44 0.59
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
Found at i:75727409 original size:40 final size:40
Alignment explanation
Indices: 75727307--75727513 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
75727297 TCGGGTTTAA
** * * *
75727307 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
*
75727346 CCGGATAT-GTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
** *
75727385 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
* * * *
75727425 CCGGATATAGTAACTCGCATAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGA-CTTAGC
* *
75727465 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAGC
75727506 CCGGATAT
1 CCGGATAT
75727514 CATTCGAATA
Statistics
Matches: 140, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
38 7 0.05
39 35 0.25
40 70 0.50
41 25 0.18
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:75727463 original size:80 final size:79
Alignment explanation
Indices: 75727307--75727513 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 79
75727297 TCGGGTTTAA
** * * *
75727307 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGTCACTAGCATAAATGC
1 CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATGTAACTAGCATAAATGC
75727371 CTTCGGGACTTAGC
66 CTTCGGGACTTAGC
* * * *
75727385 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAATG
1 CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT-GTAACTAGCATAAATG
*
75727450 CCTTC-GGATCTTAGT
65 CCTTCGGGA-CTTAGC
* *
75727465 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAGTCAC-TAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
75727514 CATTCGAATA
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
78 17 0.15
79 27 0.24
80 38 0.34
81 29 0.26
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATGTAACTAGCATAAATGC
CTTCGGGACTTAGC
Found at i:75735509 original size:39 final size:40
Alignment explanation
Indices: 75735426--75735629 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
75735416 TCGGGTTTAA
** * * *
75735426 CCGGATATAACCACTCGCAC-AAGGCCTTC-GGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
*
75735464 CCGGATAT-GTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
** *
75735503 CCGGATATAGT-ACTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
* * * *
75735542 CCGGATATAGTAACTCGCATAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGA-CTTAGC
*
75735582 CCGGATATAGTCACTTA-CACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAGC
75735622 CCGGATAT
1 CCGGATAT
75735630 CATTCGAATA
Statistics
Matches: 138, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
37 7 0.05
38 16 0.12
39 53 0.38
40 58 0.42
41 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:75735580 original size:79 final size:79
Alignment explanation
Indices: 75735449--75735629 Score: 244
Period size: 79 Copynumber: 2.3 Consensus size: 79
75735439 CTCGCACAAG
*
75735449 GCCTTC-GGTCTTAGCCCGGATATGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAG
1 GCCTTCGGGTCTTAGCCCGGATATGTAACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAG
*
75735513 T-AC-TAGCACAAAT
66 TCACTTA-CACAAAA
* * * *
75735526 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAATGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT-GTAACTAGCATAAATGCCTTCGGGA-CTTAGCCCGGATAT
75735590 AGTCACTTACACAAAA
64 AGTCACTTACACAAAA
*
75735606 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
75735630 CATTCGAATA
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
77 6 0.07
78 18 0.20
79 35 0.39
80 29 0.32
81 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (79 bp):
GCCTTCGGGTCTTAGCCCGGATATGTAACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTTACACAAAA
Done.