Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 243 of 433
Found at i:75738243 original size:34 final size:34
Alignment explanation
Indices: 75738195--75738281 Score: 106
Period size: 34 Copynumber: 2.6 Consensus size: 34
75738185 GATACTATAT
*
75738195 TGATTTGGGCTAAGGCCCACAC-AATTACTGCTAC
1 TGATATGGGCTAAGGCCCACACTAA-TACTGCTAC
* *
75738229 T-ATAATGGGCTAAGGCCCACACTGATATTGCTAC
1 TGAT-ATGGGCTAAGGCCCACACTAATACTGCTAC
*
75738263 TGATATGGGCTTAGGCCCA
1 TGATATGGGCTAAGGCCCA
75738282 GACTGTACGG
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
33 2 0.04
34 41 0.89
35 3 0.07
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (34 bp):
TGATATGGGCTAAGGCCCACACTAATACTGCTAC
Found at i:75741151 original size:49 final size:49
Alignment explanation
Indices: 75741096--75741364 Score: 200
Period size: 49 Copynumber: 5.6 Consensus size: 49
75741086 ACATCAAAGT
*
75741096 TGATGCCATGTCCCAAACAGATCTTACACTGACTTTCATATATCAAGGC
1 TGATGCCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCAAGGC
* * * * * *
75741145 TGATGCCGTGTCCCAAACAGGTCTTACACTGGCTCTCATTTATC-GGTGT
1 TGATGCCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCAAG-GC
* * * * *
75741194 TGATGCCATGTCCCAGACAGGTCTTATACTGAC--ACACA-A-CAA-AC
1 TGATGCCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCAAGGC
* * ** *
75741238 TGATGCCATGTCCCAAACAGGTCTTGCACT-AGCTTGT-ATATTTTGAGTC
1 TGATGCCATGTCCCAAACAGGTCTTACACTGA-CTT-TCATATATCAAGGC
* * * * *
75741287 TGATG-CATGTCCCAGACATGTCTTACACTGGCTTGT-ATATCTCGAGGC
1 TGATGCCATGTCCCAAACAGGTCTTACACTGACTT-TCATATATCAAGGC
* * *
75741335 CGATG-CATGTCCCAGACATGTCTTACACTG
1 TGATGCCATGTCCCAAACAGGTCTTACACTG
75741365 GCACACATAT
Statistics
Matches: 176, Mismatches: 34, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
43 1 0.01
44 28 0.16
45 1 0.01
46 3 0.02
47 2 0.01
48 66 0.38
49 75 0.43
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (49 bp):
TGATGCCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCAAGGC
Found at i:75741364 original size:48 final size:48
Alignment explanation
Indices: 75741239--75741366 Score: 175
Period size: 48 Copynumber: 2.6 Consensus size: 48
75741229 ACAACAAACT
* * * * * * * *
75741239 GATGCCATGTCCCAAACAGGTCTTGCACTAGCTTGTATATTTTGAGTCT
1 GATG-CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCC
75741288 GATGCATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCC
75741336 GATGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
75741367 ACACATATCA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
48 67 0.94
49 4 0.06
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCC
Found at i:75742031 original size:20 final size:20
Alignment explanation
Indices: 75742006--75742044 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
75741996 ACAATTTTAA
75742006 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
75742026 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
75742045 AATAACCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:75748660 original size:25 final size:25
Alignment explanation
Indices: 75748632--75748710 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
75748622 ACTCGGCCCT
75748632 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** *** *
75748657 ATCACAT-TGGCCA-TTAGGCCTT-
1 ATCACATATATACACTTTCACATTC
75748679 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
75748704 ATCACAT
1 ATCACAT
75748711 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:75748759 original size:49 final size:49
Alignment explanation
Indices: 75748582--75749000 Score: 679
Period size: 49 Copynumber: 8.7 Consensus size: 49
75748572 CCCTTCGGGA
* * * * * *
75748582 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
* * *
75748629 CCTATCACATA--TATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
*
75748676 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
*
75748723 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTATGC
1 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
75748772 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
75748821 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
75748870 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
75748919 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
* *
75748968 CTTATCACATATATATACACTTTCACATTCATC
1 CTTATCACATATGTATACGCTTTCACATTCATC
75749001 GCGTAGAATC
Statistics
Matches: 357, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 97 0.27
49 260 0.73
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (49 bp):
CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75754230 original size:24 final size:23
Alignment explanation
Indices: 75754198--75754306 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
75754188 ACCAAACGTT
* **
75754198 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
75754222 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
75754246 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
75754270 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
75754294 GCACACATAGTGC
1 GCACACATAGTGC
75754307 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:75754272 original size:48 final size:48
Alignment explanation
Indices: 75754198--75754306 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
75754188 ACCAAACGTT
* **
75754198 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
75754246 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
75754294 GCACACATAGTGC
1 GCACACATAGTGC
75754307 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:75764291 original size:42 final size:42
Alignment explanation
Indices: 75764189--75764295 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 42
75764179 GTCTGAGACA
* * *
75764189 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTGTAAGACCATGTCTGAGACACAGGCATCGATTGAGATT
* * *
75764231 TACATATAAGACCATGTCTGAGACATCA-GCATCGTATT-TGATT
1 T-CGTGTAAGACCATGTCTGAGACA-CAGGCATCG-ATTGAGATT
*
75764274 TCGTGTAAGACCCTGTCTGAGA
1 TCGTGTAAGACCATGTCTGAGA
75764296 TAGAAGGATC
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
42 19 0.36
43 29 0.55
44 5 0.09
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGAGACACAGGCATCGATTGAGATT
Found at i:75768945 original size:40 final size:40
Alignment explanation
Indices: 75768843--75769010 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
75768833 AAATTGAATG
* * * *
75768843 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GGAATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAA-TT
* ***
75768883 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
75768923 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
75768963 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ATGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
75769003 ATATCCGG
1 ATATCCGG
75769011 TTATATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 4 0.04
40 100 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:75771693 original size:47 final size:47
Alignment explanation
Indices: 75771621--75772182 Score: 794
Period size: 47 Copynumber: 12.1 Consensus size: 47
75771611 ACACGTTTCG
* * * * * *
75771621 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
** *
75771668 CATTGGCCATTTTGCCTTATCACATATATGCATGTTCTCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
75771715 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
75771762 CATTGGCGATTCGGCCTTATAACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
75771809 TATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
75771856 CATTGGCCATTCGGCCTTATCCCGTATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
75771903 CATTGGCCATTCGGCCTTACCGCACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
75771950 CATTGGCCATTCAGCCTTATCCCATATATGCATGTTCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
75771997 CATTGGCCATTCGG-----TCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
75772039 CATTGGCCATTCGGCCTTATCGCACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
75772086 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCG
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
75772133 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
75772180 CAT
1 CAT
75772183 AAAATCCTAA
Statistics
Matches: 465, Mismatches: 44, Indels: 12
0.89 0.08 0.02
Matches are distributed among these distances:
42 40 0.09
46 1 0.00
47 424 0.91
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:75776572 original size:22 final size:22
Alignment explanation
Indices: 75776544--75776589 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
75776534 GATATTCTGA
75776544 GATTGCATGGTGTGCCATTATC
1 GATTGCATGGTGTGCCATTATC
*
75776566 GATTGCATGGTGTGCCATTGTC
1 GATTGCATGGTGTGCCATTATC
75776588 GA
1 GA
75776590 AAGTGTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.30, T:0.35
Consensus pattern (22 bp):
GATTGCATGGTGTGCCATTATC
Found at i:75779174 original size:22 final size:22
Alignment explanation
Indices: 75779140--75779204 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
75779130 GCAAATACGT
* *
75779140 TTGGCTCACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
75779162 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
75779184 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
75779205 ATTAATTGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:75779717 original size:27 final size:27
Alignment explanation
Indices: 75779665--75779988 Score: 253
Period size: 27 Copynumber: 12.0 Consensus size: 27
75779655 TTTCACCCTA
* * * *
75779665 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
75779692 CAAGGGTATTTTGGTTATTTTTCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
75779719 CAATGGTATTTCT-GTAATTTTAGAAAGT
1 CAAGGGTATTT-TGGTAATTTTACAAA-T
* **
75779747 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
75779774 C-AGTGGTATTTTTGTAATTTTCCAAAT
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * *
75779801 CAAGGGTATTTCGATAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
75779828 CAGGGGTATTTTGGTAATTTTAAAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
75779855 CAAGGGTATTTCAGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * * **
75779882 CGTGGGTATTTCGGTTATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
75779909 -AGGTGGTATTTCGATAATTTCACAAAT
1 CAAG-GGTATTTTGGTAATTTTACAAAT
*
75779936 C-AGTGCTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
*
75779962 CTAGGGGTATTTTGGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
75779989 CGAGGGGTAT
Statistics
Matches: 241, Mismatches: 47, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.02
27 212 0.88
28 25 0.10
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:75780049 original size:27 final size:27
Alignment explanation
Indices: 75780019--75780123 Score: 174
Period size: 27 Copynumber: 3.9 Consensus size: 27
75780009 TGTAAACCAA
*
75780019 GGGCATTTCAGTAATTCTACCCTACAT
1 GGGCATTTCAGTAATTCTACCCTACAG
75780046 GGGCATTTCAGTAATTCTACCCTACAG
1 GGGCATTTCAGTAATTCTACCCTACAG
75780073 GGGCATTTCAGTAATTCTACCCTACAG
1 GGGCATTTCAGTAATTCTACCCTACAG
* * *
75780100 GGGTATTTCAGTAATACTAGCCTA
1 GGGCATTTCAGTAATTCTACCCTA
75780124 TAGATATGAG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (27 bp):
GGGCATTTCAGTAATTCTACCCTACAG
Found at i:75782176 original size:17 final size:18
Alignment explanation
Indices: 75782154--75782191 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
75782144 ATTAAAAACC
75782154 CTTCTT-ACAATTTAAAA
1 CTTCTTGACAATTTAAAA
* *
75782171 CTTCTTGCCATTTTAAAA
1 CTTCTTGACAATTTAAAA
75782189 CTT
1 CTT
75782192 GTGAAAACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.32, C:0.21, G:0.03, T:0.45
Consensus pattern (18 bp):
CTTCTTGACAATTTAAAA
Found at i:75783614 original size:46 final size:46
Alignment explanation
Indices: 75783564--75783739 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
75783554 TGGTTGAGCA
*
75783564 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
75783610 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
75783657 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
75783703 -CCAAAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75783740 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
45 3 0.03
46 65 0.64
47 34 0.33
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:75783720 original size:93 final size:93
Alignment explanation
Indices: 75783561--75783731 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
75783551 GGATGGTTGA
* * *
75783561 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCAAACTCGTTGAGT
75783626 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
75783654 GCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG-CCAAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCAAA-CTCGTTGAG
*
75783718 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
75783732 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCAAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:75785647 original size:40 final size:39
Alignment explanation
Indices: 75785602--75785731 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
75785592 CGGAATATAA
75785602 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
75785642 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75785682 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
75785722 CCGGATATAA
1 CCGGATATAA
75785732 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75785746 original size:40 final size:40
Alignment explanation
Indices: 75785618--75785768 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
75785608 ATAACCATGT
* * *
75785618 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
75785658 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75785698 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
75785738 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
75785769 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:75785752 original size:80 final size:79
Alignment explanation
Indices: 75785618--75785766 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
75785608 ATAACCATGT
* *
75785618 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
75785683 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
75785698 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
75785761 CCGGAT
64 CCGGAT
75785767 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:75793642 original size:40 final size:39
Alignment explanation
Indices: 75793597--75793726 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
75793587 CGGAATATAA
75793597 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
75793637 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75793677 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
75793717 CCGGATATAA
1 CCGGATATAA
75793727 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75793741 original size:40 final size:40
Alignment explanation
Indices: 75793613--75793763 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
75793603 ATAACCATGT
* * *
75793613 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
75793653 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75793693 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75793733 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
75793764 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 15 0.16
40 74 0.81
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:75793747 original size:80 final size:79
Alignment explanation
Indices: 75793613--75793761 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
75793603 ATAACCATGT
*
75793613 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
75793678 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
75793693 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
75793756 CCGGAT
64 CCGGAT
75793762 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:75797453 original size:30 final size:30
Alignment explanation
Indices: 75797395--75797454 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
75797385 TTCCTAAGCC
* *
75797395 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
* *
75797425 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
75797455 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATACAAAAGTT
Found at i:75799708 original size:22 final size:22
Alignment explanation
Indices: 75799683--75799735 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
75799673 TGGCAGACAA
*
75799683 CCATAATCAGGTTGGCACAGAG
1 CCATAATCAGGTTGGCACAAAG
*
75799705 CCAT-ATGTAGGTTGGCACAAAG
1 CCATAAT-CAGGTTGGCACAAAG
75799727 CCATAATCA
1 CCATAATCA
75799736 AAATAATTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 2 0.08
22 22 0.85
23 2 0.08
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (22 bp):
CCATAATCAGGTTGGCACAAAG
Found at i:75800799 original size:45 final size:45
Alignment explanation
Indices: 75800739--75800943 Score: 268
Period size: 45 Copynumber: 4.6 Consensus size: 45
75800729 CGATATCATT
* * ** *
75800739 TCACCGGCATTATAGCCTGCTAGGCTCGAAAG-CCTAAATAGTATC
1 TCACCGGCATCATAGCCTACTAGGCTC-AAAGTCCCGAATAATATC
*
75800784 TCACCGGCATCATAGCCTACTAGGCTCAAAGTCCTGAATAATATC
1 TCACCGGCATCATAGCCTACTAGGCTCAAAGTCCCGAATAATATC
* * *
75800829 TCACTGGCATCATAGCCTCCTAGGCTCAAAGTCCCGAGTAATATC
1 TCACCGGCATCATAGCCTACTAGGCTCAAAGTCCCGAATAATATC
* * * *
75800874 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATCATAGCCTACTAGGCTCAAAGTCCCGAATAATATC
*
75800919 TCACCGGCATCATAACCTACTAGGC
1 TCACCGGCATCATAGCCTACTAGGC
75800944 CCGGAGCCCG
Statistics
Matches: 143, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
44 4 0.03
45 139 0.97
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (45 bp):
TCACCGGCATCATAGCCTACTAGGCTCAAAGTCCCGAATAATATC
Found at i:75802822 original size:26 final size:27
Alignment explanation
Indices: 75802770--75802822 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
75802760 TTGAATTCTG
* *
75802770 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
75802797 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
75802823 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:75804460 original size:27 final size:27
Alignment explanation
Indices: 75804430--75804595 Score: 129
Period size: 27 Copynumber: 6.1 Consensus size: 27
75804420 TAAATCTACT
*
75804430 AACCAAGGGTACTTCGGTAATTTTGAA
1 AACCAAGGGTATTTCGGTAATTTTGAA
* *
75804457 AACCAATGGTATTTCTGTAATTTTTGAA
1 AACCAAGGGTATTTCGGTAA-TTTTGAA
* * *
75804485 AGCAAAGGGTATTTCTGTAATTTTTGAA
1 AACCAAGGGTATTTCGGTAA-TTTTGAA
*** * **
75804513 AGTAAAGGGTATTTCGATAATTTTCCA
1 AACCAAGGGTATTTCGGTAATTTTGAA
* *
75804540 AATCAAGGGTATTTTGGTAATTTT-ACA
1 AACCAAGGGTATTTCGGTAATTTTGA-A
* * *
75804567 AATC-AGGGATATTTTGGTAATTTTAAA
1 AACCAAGGG-TATTTCGGTAATTTTGAA
75804594 AA
1 AA
75804596 TTGAGGGTAT
Statistics
Matches: 119, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.03
27 65 0.55
28 50 0.42
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
AACCAAGGGTATTTCGGTAATTTTGAA
Found at i:75804495 original size:28 final size:28
Alignment explanation
Indices: 75804434--75804563 Score: 133
Period size: 28 Copynumber: 4.7 Consensus size: 28
75804424 TCTACTAACC
* * * *
75804434 AAGGGTACTTCGGTAA-TTTTGAAAACC
1 AAGGGTATTTCTGTAATTTTTGAAAGCA
*
75804461 AATGGTATTTCTGTAATTTTTGAAAGCA
1 AAGGGTATTTCTGTAATTTTTGAAAGCA
*
75804489 AAGGGTATTTCTGTAATTTTTGAAAGTA
1 AAGGGTATTTCTGTAATTTTTGAAAGCA
** *
75804517 AAGGGTATTTC-GATAATTTTCCAAATC-
1 AAGGGTATTTCTG-TAATTTTTGAAAGCA
75804544 AAGGGTATTT-TGGTAATTTT
1 AAGGGTATTTCT-GTAATTTT
75804564 ACAAATCAGG
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
27 31 0.35
28 57 0.65
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (28 bp):
AAGGGTATTTCTGTAATTTTTGAAAGCA
Found at i:75804596 original size:27 final size:26
Alignment explanation
Indices: 75804518--75804701 Score: 158
Period size: 27 Copynumber: 6.9 Consensus size: 26
75804508 TTGAAAGTAA
* * *
75804518 AGGGTATTTCGATAATTTTCCAAATC
1 AGGGTATTTTGGTAATTTTACAAATC
75804544 AAGGGTATTTTGGTAATTTTACAAATC
1 -AGGGTATTTTGGTAATTTTACAAATC
* *
75804571 AGGGATATTTTGGTAATTTTAAAAATTG
1 AGGG-TATTTTGGTAATTTTACAAA-TC
* ** *
75804599 AGGGTATTATT--T-ATTTTATAGGTTG
1 AGGGTATT-TTGGTAATTTTACA-AATC
* *
75804624 AGGATATTTTGGTAATTTCACAAATC
1 AGGGTATTTTGGTAATTTTACAAATC
*
75804650 AAGGGTATTTTGGTAATTTTACAAACC
1 -AGGGTATTTTGGTAATTTTACAAATC
* *
75804677 AGGGGTATTATGGTAATCTTACAAA
1 A-GGGTATTTTGGTAATTTTACAAA
75804702 CTAGGGGTAT
Statistics
Matches: 129, Mismatches: 19, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
24 2 0.02
25 16 0.12
26 8 0.06
27 96 0.74
28 7 0.05
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAATC
Found at i:75804702 original size:27 final size:26
Alignment explanation
Indices: 75804628--75804712 Score: 107
Period size: 27 Copynumber: 3.2 Consensus size: 26
75804618 AGGTTGAGGA
* *
75804628 TATTTTGGTAATTTCACAAATCAAGGG
1 TATTTTGGTAATTT-ACAAACCAGGGG
75804655 TATTTTGGTAATTTTACAAACCAGGGG
1 TATTTTGGTAA-TTTACAAACCAGGGG
* *
75804682 TATTATGGTAATCTTACAAACTAGGGG
1 TATTTTGGTAAT-TTACAAACCAGGGG
75804709 TATT
1 TATT
75804713 CAGTAATTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 48 0.92
28 3 0.06
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (26 bp):
TATTTTGGTAATTTACAAACCAGGGG
Found at i:75804774 original size:26 final size:26
Alignment explanation
Indices: 75804736--75804811 Score: 116
Period size: 26 Copynumber: 2.8 Consensus size: 26
75804726 AACTAAGGAT
75804736 ATTTCAGTAATTCTACCCTATAGGGGC
1 ATTT-AGTAATTCTACCCTATAGGGGC
75804763 ATTTAGTAATTCTACCCTATAGGGGC
1 ATTTAGTAATTCTACCCTATAGGGGC
* *
75804789 ATTTTAGTAATACTAGCCTATAG
1 A-TTTAGTAATTCTACCCTATAG
75804812 ATATGAGATT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 23 0.50
27 23 0.50
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (26 bp):
ATTTAGTAATTCTACCCTATAGGGGC
Found at i:75816797 original size:14 final size:14
Alignment explanation
Indices: 75816778--75816808 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
75816768 TTATGTGTTC
*
75816778 TTTATTTTATTTAT
1 TTTATTCTATTTAT
75816792 TTTATTCTATTTAT
1 TTTATTCTATTTAT
75816806 TTT
1 TTT
75816809 TCACAGAANT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATTCTATTTAT
Found at i:75816930 original size:71 final size:71
Alignment explanation
Indices: 75816852--75817015 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
75816842 CGATTTGTCT
75816852 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75816917 CTTTCA
66 CTTTCA
75816923 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75816988 CTTTCA
66 CTTTCA
75816994 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
75817016 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:75817053 original size:71 final size:70
Alignment explanation
Indices: 75816852--75817049 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
75816842 CGATTTGTCT
* * *
75816852 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
75816917 CTTTCA
65 CTTTCA
* * *
75816923 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
75816988 CTTTCA
65 CTTTCA
* *
75816994 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
75817050 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:75818861 original size:15 final size:16
Alignment explanation
Indices: 75818841--75818875 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
75818831 ACCGAAAATA
75818841 AAAAGA-TTTTATTTG
1 AAAAGATTTTTATTTG
*
75818856 AAAAGATTTTTATTTT
1 AAAAGATTTTTATTTG
75818872 AAAA
1 AAAA
75818876 CTATTGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (16 bp):
AAAAGATTTTTATTTG
Found at i:75820216 original size:28 final size:28
Alignment explanation
Indices: 75820170--75820238 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
75820160 TTTAAAACCC
*
75820170 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75820197 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75820225 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
75820239 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:75826226 original size:40 final size:40
Alignment explanation
Indices: 75826169--75826280 Score: 140
Period size: 40 Copynumber: 2.8 Consensus size: 40
75826159 TATAACCACA
*
75826169 TGCACGAATGCCCTCGGGTCTTAGCCCGGATAGAA-CGACT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGC-ACT
*
75826209 TGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCACT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACT
* *
75826249 AGCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 TGCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
75826281 TAATTTCCAG
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
39 4 0.06
40 59 0.92
41 1 0.02
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.24
Consensus pattern (40 bp):
TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACT
Found at i:75826304 original size:40 final size:40
Alignment explanation
Indices: 75826157--75826321 Score: 136
Period size: 40 Copynumber: 4.1 Consensus size: 40
75826147 AATACAACCA
* * *
75826157 GATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGCCCG
1 GATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGCCCG
* ** *
75826197 GATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGCCCG
1 GATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGCCCG
* * * * *
75826237 GATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAACCCG
1 GATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCCCG
** * * * *
75826277 GATATAATTTCCAGCATAAATGTCTTCGGGACTTAGCGCG
1 GATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCCCG
75826317 GATAT
1 GATAT
75826322 CATTCAATTG
Statistics
Matches: 100, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 1 0.01
40 98 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
GATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCCCG
Found at i:75829012 original size:28 final size:28
Alignment explanation
Indices: 75828916--75829006 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 28
75828906 ACATACCTGT
* * * *
75828916 ATATAGCCTATTAGGCCCAATCTCTTTC
1 ATATGGCCCATTAGGCCCAATCACATTC
*
75828944 ATATGGCCCATTAGGCCCAATCACATTT
1 ATATGGCCCATTAGGCCCAATCACATTC
*
75828972 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCC-AATCACATTC
75829001 ATATGG
1 ATATGG
75829007 AAATTATGCC
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
28 40 0.74
29 14 0.26
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCACATTC
Found at i:75833702 original size:14 final size:14
Alignment explanation
Indices: 75833683--75833709 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75833673 TATCAAAATA
75833683 ATAATTAAGAACAC
1 ATAATTAAGAACAC
75833697 ATAATTAAGAACA
1 ATAATTAAGAACA
75833710 AGTTAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:75835924 original size:30 final size:30
Alignment explanation
Indices: 75835888--75835951 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
75835878 ATTAGTCCAT
75835888 AAGTCCTGCGCCAAAAGAATATTATATCTG
1 AAGTCCTGCGCCAAAAGAATATTATATCTG
*
75835918 AAGTCCTGTGCCAAAAGAATATTATATCTG
1 AAGTCCTGCGCCAAAAGAATATTATATCTG
75835948 AAGT
1 AAGT
75835952 TGGTTATGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (30 bp):
AAGTCCTGCGCCAAAAGAATATTATATCTG
Found at i:75849272 original size:42 final size:42
Alignment explanation
Indices: 75849185--75849298 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 42
75849175 AGCTTTTACA
* * *
75849185 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATAG
1 ATGCCATGTCCCAGATATGGTCTTACACGTAATCACATATAG
*
75849227 ATGCCACTGTCCCAGATAGGGTCTTACACG-AATCA-ATATACG
1 ATGCCA-TGTCCCAGATATGGTCTTACACGTAATCACATATA-G
*
75849269 ATGCCAATGTCCCAGACATGGTCTTACACG
1 ATGCC-ATGTCCCAGATATGGTCTTACACG
75849299 CAATGTCAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
41 5 0.08
42 37 0.59
43 21 0.33
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAGATATGGTCTTACACGTAATCACATATAG
Found at i:75855223 original size:13 final size:13
Alignment explanation
Indices: 75855190--75855228 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
75855180 CTTATTACCT
*
75855190 ATTTTTTATATTAT
1 ATTTTTT-TATTAA
*
75855204 ATATTTTTATTAA
1 ATTTTTTTATTAA
75855217 ATTTTTTTATTA
1 ATTTTTTTATTA
75855229 TTACCCGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTTTTTATTAA
Found at i:75856690 original size:93 final size:93
Alignment explanation
Indices: 75856578--75856749 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75856568 CGCCCATAAG
* *
75856578 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75856643 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75856671 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75856736 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75856750 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75856746 original size:46 final size:46
Alignment explanation
Indices: 75856571--75856746 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75856561 TGTAACCCGC
* * *
75856571 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75856617 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75856667 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75856710 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75856747 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75864267 original size:93 final size:93
Alignment explanation
Indices: 75864155--75864326 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75864145 CGCCCATAAG
* *
75864155 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75864220 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
75864248 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75864313 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75864327 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75864323 original size:46 final size:46
Alignment explanation
Indices: 75864148--75864323 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
75864138 TGTAACCCGC
* * *
75864148 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75864194 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75864244 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75864287 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75864324 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75868306 original size:40 final size:41
Alignment explanation
Indices: 75868261--75868387 Score: 149
Period size: 40 Copynumber: 3.2 Consensus size: 41
75868251 CTGGAAATTA
* *
75868261 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTGG-TAC
* *
75868302 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTGGTAC
75868341 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGGTTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGA-GTGG-TAC
75868381 TATCCGG
1 TATCCGG
75868388 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
39 6 0.08
40 69 0.91
41 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTGGTAC
Found at i:75870429 original size:19 final size:18
Alignment explanation
Indices: 75870392--75870435 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
75870382 ATACATACAG
*
75870392 TAAT-ATTTTTCTTATAA
1 TAATAATTTTTCTCATAA
75870409 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTCATAA
*
75870428 TACTAATT
1 TAATAATT
75870436 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATAATTTTTCTCATAA
Found at i:75878951 original size:40 final size:40
Alignment explanation
Indices: 75878891--75879074 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
75878881 TATTCGAATG
* *
75878891 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
75878931 ATATCCGGACTGAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* * *
75878971 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
75879011 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
75879051 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
75879075 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 120 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:75879031 original size:80 final size:79
Alignment explanation
Indices: 75878891--75879110 Score: 266
Period size: 80 Copynumber: 2.8 Consensus size: 79
75878881 TATTCGAATG
* * * *
75878891 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTGAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAG-TCCCGAAGGC
* *
75878955 ATTTGTGCGAGTTG-CT
64 ATTTATGCGAG-TGACC
* *
75878971 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAGGCA
*
75879036 TTTATGCTAGTGACC
65 TTTATGCGAGTGACC
* * * *
75879051 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GACTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAG
75879111 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
78 13 0.11
79 20 0.16
80 89 0.73
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAGGCAT
TTATGCGAGTGACC
Found at i:75883813 original size:22 final size:22
Alignment explanation
Indices: 75883771--75883814 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
75883761 GAAAATAATC
* *
75883771 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAACTAATTAT
*
75883793 AAAATTAATTAAAACTAATTAT
1 AAAATTAATCAAAACTAATTAT
75883815 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAACTAATTAT
Found at i:75885057 original size:15 final size:14
Alignment explanation
Indices: 75885037--75885073 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
75885027 GCATTGGAAC
75885037 TTTTATTTTATTTTA
1 TTTTATTTTA-TTTA
75885052 TTTTATTTTATTTA
1 TTTTATTTTATTTA
*
75885066 CTTTATTT
1 TTTTATTT
75885074 ACTTTATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTATTTTATTTA
Found at i:75885070 original size:9 final size:9
Alignment explanation
Indices: 75885038--75885081 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
75885028 CATTGGAACT
*
75885038 TTTATTTTAT
1 TTTA-TTTAC
*
75885048 TTTATTTTAT
1 TTTA-TTTAC
75885058 TTTATTTAC
1 TTTATTTAC
75885067 TTTATTTAC
1 TTTATTTAC
75885076 TTTATT
1 TTTATT
75885082 AAAATCCTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 19 0.58
10 14 0.42
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTATTTAC
Found at i:75885079 original size:5 final size:5
Alignment explanation
Indices: 75885037--75885073 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
75885027 GCATTGGAAC
*
75885037 TTTTA TTTTA TTTTA TTTTA TTTTA -TTTA CTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
75885074 ACTTTATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:75889007 original size:47 final size:47
Alignment explanation
Indices: 75888944--75889071 Score: 229
Period size: 47 Copynumber: 2.7 Consensus size: 47
75888934 ACGAAACTTA
75888944 GCCGATGCATGCCCCAGACACGTCTTACACTGGCTAACATTATCAAG
1 GCCGATGCATGCCCCAGACACGTCTTACACTGGCTAACATTATCAAG
75888991 GCCGATGCATGCCCCAGACACGTCTTACACTGGCTAACATTATCAAG
1 GCCGATGCATGCCCCAGACACGTCTTACACTGGCTAACATTATCAAG
* * *
75889038 GCCGATGCATGTCCCAAACATGTCTTACACTGGC
1 GCCGATGCATGCCCCAGACACGTCTTACACTGGC
75889072 ACTCACCTCT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 78 1.00
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.22
Consensus pattern (47 bp):
GCCGATGCATGCCCCAGACACGTCTTACACTGGCTAACATTATCAAG
Found at i:75889101 original size:141 final size:138
Alignment explanation
Indices: 75888903--75889162 Score: 310
Period size: 141 Copynumber: 1.9 Consensus size: 138
75888893 TATACGTGCT
* *
75888903 GATGCATGCCCCAGACATGTCTTACACTAGCACGAAACTTAGCCGATGCATGCCCCAGAC-ACGT
1 GATGCATGCCCCAAACATGTCTTACACTAGCACGAAACTTAGCCGAAGCATGCCCCAGACGACGT
* *
75888967 CTTACACT-GGCTAACATTAT-CAAGGCCGATGCATGCCCCAGACACGTCTTACACTGGCTAACA
66 CTTACA-TGGGCTAACATGATGC-A-GCAGATGCATGCCCCAGACACGTCTTACACTGGCTAACA
75889030 TTATCAAGGCC
128 TTATCAAGGCC
* * ** * * *
75889041 GATGCATGTCCCAAACATGTCTTACACTGGCACTCACCTCTATGCCGAAGTCATGTCCCAGACGT
1 GATGCATGCCCCAAACATGTCTTACACTAGCACGAAACT-TA-GCCGAAG-CATGCCCCAGACGA
* * * *
75889106 GGTCTTACATGGGCTATCATGATGCAGCAGATGCATGTCCCAGACATGTCTTACACT
63 CGTCTTACATGGGCTAACATGATGCAGCAGATGCATGCCCCAGACACGTCTTACACT
75889163 AGCCCTCGTC
Statistics
Matches: 101, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
138 33 0.33
139 2 0.02
140 6 0.06
141 40 0.40
142 19 0.19
143 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (138 bp):
GATGCATGCCCCAAACATGTCTTACACTAGCACGAAACTTAGCCGAAGCATGCCCCAGACGACGT
CTTACATGGGCTAACATGATGCAGCAGATGCATGCCCCAGACACGTCTTACACTGGCTAACATTA
TCAAGGCC
Found at i:75889190 original size:47 final size:46
Alignment explanation
Indices: 75888853--75889218 Score: 195
Period size: 47 Copynumber: 7.8 Consensus size: 46
75888843 CATCGAGGCT
* * * *
75888853 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCGTGT-ATACGTGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCA-A--TGCC
* * ** * *
75888903 GATGCATGCCCCAGACATGTCTTACACTAGCACGAAACT-TA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
* * * ** * *
75888947 GATGCATGCCCCAGACACGTCTTACACTGGCTAACATTATCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCA-TCTCAATGCC
* * * ** * *
75888994 GATGCATGCCCCAGACACGTCTTACACTGGCTAACATTATCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCA-TCTCAATGCC
* * * * *
75889041 GATGCATGTCCCAAACATGTCTTACACTGGCACTCACCTCTATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
* * * * * *
75889087 GAAGTCATGTCCCAGACGTGGTCTTACA-TGGGCTATCATGATGC-A-GCA
1 GATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCTCAT-CT-CAATGCC
* *
75889135 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
* * * *
75889181 GATGCCATGTCTCAGATATGGTCTTATACTGGCTCTCA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCA
75889219 CATAACCCCA
Statistics
Matches: 252, Mismatches: 51, Indels: 28
0.76 0.15 0.08
Matches are distributed among these distances:
44 33 0.13
45 3 0.01
46 29 0.12
47 120 0.48
48 47 0.19
49 15 0.06
50 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
Found at i:75891272 original size:26 final size:27
Alignment explanation
Indices: 75891234--75891316 Score: 132
Period size: 26 Copynumber: 3.1 Consensus size: 27
75891224 CCTTGGAGTT
75891234 AGTTTATTTTGAAAGTGTATGTATATA
1 AGTTTATTTTGAAAGTGTATGTATATA
*
75891261 A-TTTATTTTGAAAGTGCATGTATATA
1 AGTTTATTTTGAAAGTGTATGTATATA
*
75891287 TAGTTTGTTTTGAAAGTGTATGTATATA
1 -AGTTTATTTTGAAAGTGTATGTATATA
75891315 AG
1 AG
75891317 CCATGAGAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 24 0.47
27 4 0.08
28 23 0.45
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (27 bp):
AGTTTATTTTGAAAGTGTATGTATATA
Found at i:75898981 original size:55 final size:55
Alignment explanation
Indices: 75898881--75898984 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 55
75898871 TTAAGGATAC
* * *
75898881 CATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTTTAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGACAATTGATAAGGTTTATAAGGCAAGGAAAT
* *
75898936 CATGTAAGACCATGTCAAGACATGGC-ATTGATAA-GTTACTATAAGGCAA
1 CATGTAAGACCATGCCAAGACATGACAATTGATAAGGTT--TATAAGGCAA
75898985 AGGTCCCATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
53 3 0.07
54 7 0.17
55 32 0.76
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (55 bp):
CATGTAAGACCATGCCAAGACATGACAATTGATAAGGTTTATAAGGCAAGGAAAT
Found at i:75907476 original size:124 final size:124
Alignment explanation
Indices: 75907254--75907478 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
75907244 GAATTATGTG
* * * * * *
75907254 AAATGAAATATGGATGTGTAATGATTATCGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATCGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
75907319 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGACCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
75907378 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATCGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
75907443 GCTAAGACCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGACCCGAAGACGATTA-TGCTAGAAATTATAT
75907479 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 3 0.03
124 84 0.97
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATCGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGACCCGAAGACGATTATGCTAGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:75907521 original size:40 final size:41
Alignment explanation
Indices: 75907476--75907582 Score: 134
Period size: 40 Copynumber: 2.7 Consensus size: 41
75907466 CTGGAAATTA
* *
75907476 TATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAG-CGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCCATTCGTGCGAGTC-G-TAC
*
75907517 -ATCCGGGCTAAGACCCGAAGG-CATTCGTGCGAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCCATTCGTGCGAGTCGTAC
75907556 TATCCGGGCTAAGACCCGAAGG-CATTC
1 TATCCGGGCTAAGACCCGAAGGCCATTC
75907583 ATGCACGTAG
Statistics
Matches: 60, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
39 6 0.10
40 53 0.88
41 1 0.02
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCCATTCGTGCGAGTCGTAC
Found at i:75907600 original size:40 final size:40
Alignment explanation
Indices: 75907435--75907602 Score: 132
Period size: 40 Copynumber: 4.2 Consensus size: 40
75907425 CAATTGAATG
* * * *
75907435 ATATCCGGGCTAAGACCCGAAGACGTTATTGCTG--GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTA-TGC-GACGTAGTT
* * * *
75907475 ATATCCGGGTTAAGACCCGAAGGCCATTGTGCTAGCG--GCT
1 ATATCCGGGCTAAGACCCGAAGG-CATTATGCGA-CGTAGTT
* * *
75907515 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-ATGCGACGTAGTT
*
75907555 CTATCCGGGCTAAGACCCGAAGGCATTCATGC-ACGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-ATGCGACGTAGTT
75907595 ATATCCGG
1 ATATCCGG
75907603 TTGTATTCCG
Statistics
Matches: 104, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 94 0.90
41 3 0.03
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTATGCGACGTAGTT
Found at i:75915593 original size:40 final size:40
Alignment explanation
Indices: 75915466--75915595 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
75915456 ATGCTGGAAA
* *
75915466 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
75915506 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75915546 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75915586 TTATATCCGG
1 TTATATCCGG
75915596 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75924578 original size:40 final size:40
Alignment explanation
Indices: 75924451--75924580 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75924441 ATGCTGGAAA
* * *
75924451 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
75924491 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75924531 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75924571 TTATATCCGG
1 TTATATCCGG
75924581 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75932458 original size:122 final size:122
Alignment explanation
Indices: 75932238--75932460 Score: 322
Period size: 122 Copynumber: 1.8 Consensus size: 122
75932228 GAATTATGTG
* * * * * *
75932238 AAATGAAATATGGATGTGTAATGATTATCGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATCGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
75932303 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTTTGAGCCTTAGTAACGA
* *
75932360 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATCGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
75932425 GCTAAGTCCCGAAGAC-ATTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
75932461 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
121 4 0.05
122 84 0.95
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (122 bp):
AAATGAAATATGAATGTCTAATGATTATCGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTTTGAGCCTTAGTAACGA
Found at i:75932582 original size:40 final size:40
Alignment explanation
Indices: 75932455--75932584 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75932445 TTGCTGGAAA
* * *
75932455 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
75932495 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75932535 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75932575 TTATATCCGG
1 TTATATCCGG
75932585 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75938114 original size:28 final size:28
Alignment explanation
Indices: 75938068--75938136 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
75938058 TTTAAAACCC
*
75938068 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75938095 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75938123 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
75938137 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:75943960 original size:27 final size:27
Alignment explanation
Indices: 75943930--75943991 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
75943920 TTTAAAACCC
75943930 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAATTTTGCTCTT
*
75943957 TA-GGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGT-ATATCGGTAATTTTGCTCTT
75943984 TAGGGGTA
1 TAGGGGTA
75943992 ATTTCGTGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 4 0.12
27 24 0.75
28 4 0.12
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (27 bp):
TAGGGGTATATCGGTAATTTTGCTCTT
Found at i:75959855 original size:48 final size:48
Alignment explanation
Indices: 75959791--75959985 Score: 284
Period size: 48 Copynumber: 4.0 Consensus size: 48
75959781 TATATATGTG
* *
75959791 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATA
** *
75959839 TGTGGTAAAGCAGAATGGCTAACATGAAATATGTATGAGATATATATATA
1 TGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAG--ATATGTATA
*
75959889 TGTGGTAAA-TATGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCA-GAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
75959937 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATGTGTATA
1 TGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATA
75959985 T
1 T
75959986 ATTGTGGCCG
Statistics
Matches: 131, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
48 88 0.67
49 1 0.01
50 42 0.32
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.32
Consensus pattern (48 bp):
TGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:75959939 original size:98 final size:98
Alignment explanation
Indices: 75959780--75959992 Score: 318
Period size: 98 Copynumber: 2.2 Consensus size: 98
75959770 TACAAGATAA
* * * *
75959780 ATATATATGTGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 ATATATATATATGTGGTAAAGACGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
75959845 AAAGCAGAATGGCTAACATGAAATATGTATGAG
66 AAAGCAGAATGGCTAACATGAAATATGTATGAG
* *
75959878 ATATATATATATGTGGTAAATATGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 ATATATATATATGTGGTAAAGACGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* **
75959943 AAAGCCGAATGGCTAATGTGAAATATGTATGAG
66 AAAGCAGAATGGCTAACATGAAATATGTATGAG
* *
75959976 ATGTGTATATATTGTGG
1 ATATATATATA-TGTGG
75959993 CCGAATGACC
Statistics
Matches: 103, Mismatches: 11, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
98 98 0.95
99 5 0.05
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (98 bp):
ATATATATATATGTGGTAAAGACGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCAGAATGGCTAACATGAAATATGTATGAG
Found at i:75961897 original size:43 final size:43
Alignment explanation
Indices: 75961848--75962146 Score: 464
Period size: 43 Copynumber: 7.1 Consensus size: 43
75961838 GAAACTCGAG
*
75961848 GATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
*
75961891 GATATGTATTCGGGCGTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
* * *
75961934 GATATGTA-TCGGGCCTTCGTG-CTAGTAGGCTTTGAGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
*
75961975 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGAT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
*
75962018 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
*
75962061 GATATGTATTCGGGCCTTCGTGCCTA-CAGGCTTCGTGCTGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
* **
75962103 GATATGTATTCGGGTCTT--TGCCTAGCAGGCTTAATGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
75962144 GAT
1 GAT
75962147 TCGAGCAAGG
Statistics
Matches: 235, Mismatches: 18, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
40 6 0.03
41 41 0.17
42 56 0.24
43 132 0.56
ACGTcount: A:0.13, C:0.22, G:0.32, T:0.32
Consensus pattern (43 bp):
GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
Found at i:75962038 original size:127 final size:128
Alignment explanation
Indices: 75961848--75962134 Score: 465
Period size: 127 Copynumber: 2.3 Consensus size: 128
75961838 GAAACTCGAG
* *
75961848 GATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCGTTCGTG
1 GATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTGCCGATGATATGTATTCGGGCCTTCGTG
* *
75961913 CCTAGCAGGCTTCGTGCCGGTGATATGTA-TCGGGCCTTCGTG-CTAGTAGGCTTTGAGCCGGT
66 CCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTA-CAGGCTTCGAGCCGGT
*
75961975 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATATGTATTCGGGCCTTCGTG
1 GATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTGCCGATGATATGTATTCGGGCCTTCGTG
* * *
75962040 CCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTACAGGCTTCGTGCTGGT
66 CCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTACAGGCTTCGAGCCGGT
75962103 GATATGTATTCGGGTCTT--TGCCTAGCAGGCTT
1 GATATGTATTCGGGTCTTCGTGCCTAGCAGGCTT
75962135 AATGCCGGTG
Statistics
Matches: 149, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
126 14 0.09
127 90 0.60
128 42 0.28
129 3 0.02
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.32
Consensus pattern (128 bp):
GATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTGCCGATGATATGTATTCGGGCCTTCGTG
CCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTACAGGCTTCGAGCCGGT
Found at i:75962372 original size:57 final size:57
Alignment explanation
Indices: 75962300--75962464 Score: 226
Period size: 57 Copynumber: 2.9 Consensus size: 57
75962290 CGAATGATTA
*
75962300 GAGGCACTGTGTGTGCAAATTCCGTTAACCGAGC-CTATGTGTGCGAGATCAATAATT
1 GAGGCACTGTGTGTGCGAATTCC-TTAACCGAGCACTATGTGTGCGAGATCAATAATT
* * ***
75962357 GAGGCACTGTATGTGCGAATTCCTTTAACCGAGCATTATGTGTGCGAGATTGGTAATT
1 GAGGCACTGTGTGTGCGAATTCC-TTAACCGAGCACTATGTGTGCGAGATCAATAATT
*
75962415 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATC
1 GAGGCACTGTGTGTGCGAATTCCTT-AACCGAGCACTATGTGTGCGAGATC
75962465 GGTCAGTGGG
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
56 2 0.02
57 55 0.58
58 38 0.40
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCGAATTCCTTAACCGAGCACTATGTGTGCGAGATCAATAATT
Found at i:75962456 original size:28 final size:27
Alignment explanation
Indices: 75962324--75962461 Score: 89
Period size: 29 Copynumber: 4.9 Consensus size: 27
75962314 GCAAATTCCG
*
75962324 TTAACCGAGC-CTATGTGTGCGAGATC
1 TTAACCGAGCACTATGTGTGCGAGTTC
* ** * * *
75962350 AATAATTGAGGCACTGTATGTGCGAATTCC
1 -TTAACCGA-GCACTATGTGTGCGAGTT-C
* *
75962380 TTTAACCGAGCATTATGTGTGCGAGATTG
1 -TTAACCGAGCACTATGTGTGCGAG-TTC
* ** *
75962409 GTAATTGAGGCACTGTGTGTGCGAGTTC
1 TTAACCGA-GCACTATGTGTGCGAGTTC
75962437 TTCAACCGAGCACTATGTGTGCGAG
1 TT-AACCGAGCACTATGTGTGCGAG
75962462 ATCGGTCAGT
Statistics
Matches: 79, Mismatches: 26, Indels: 11
0.68 0.22 0.09
Matches are distributed among these distances:
27 5 0.06
28 25 0.32
29 41 0.52
30 8 0.10
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (27 bp):
TTAACCGAGCACTATGTGTGCGAGTTC
Found at i:75962477 original size:28 final size:28
Alignment explanation
Indices: 75962393--75962485 Score: 71
Period size: 28 Copynumber: 3.3 Consensus size: 28
75962383 AACCGAGCAT
* * *
75962393 TATGTGTGCGAGATTGGTAATTGAGGCAC
1 TATGTGTGCGAGATCGGTCACTG-GGCAC
* * * * *
75962422 TGTGTGTGCGAGTTC-TTCAACCGAGCAC
1 TATGTGTGCGAGATCGGTC-ACTGGGCAC
*
75962450 TATGTGTGCGAGATCGGTCAGTGGGCAC
1 TATGTGTGCGAGATCGGTCACTGGGCAC
*
75962478 TAAGTGTG
1 TATGTGTG
75962486 TGAAATGAGA
Statistics
Matches: 47, Mismatches: 15, Indels: 5
0.70 0.22 0.07
Matches are distributed among these distances:
28 31 0.66
29 16 0.34
ACGTcount: A:0.20, C:0.16, G:0.34, T:0.29
Consensus pattern (28 bp):
TATGTGTGCGAGATCGGTCACTGGGCAC
Found at i:75965941 original size:48 final size:48
Alignment explanation
Indices: 75965870--75966075 Score: 304
Period size: 48 Copynumber: 4.2 Consensus size: 48
75965860 CAAGATAAAT
* * *
75965870 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
75965918 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75965966 ATATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ----ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75966018 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75966066 ATGTGTATAT
1 ATATGTATAT
75966076 ATTGTGGCCG
Statistics
Matches: 142, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
48 98 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:75966024 original size:100 final size:99
Alignment explanation
Indices: 75965868--75966082 Score: 358
Period size: 100 Copynumber: 2.2 Consensus size: 99
75965858 TACAAGATAA
*
75965868 ATATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 ATATATATAT-TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
75965933 AAAGCCGAATGGCTAACATGAAATATGTATGAGAT
65 AAAGCCGAATGGCTAACATGAAATATGTATGAGAT
*
75965968 ATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 ATATATATAT-TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
**
75966033 AAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
65 AAAGCCGAATGGCTAACATGAAATATGTATGAGAT
* *
75966068 GTGTATATATTGTGG
1 ATATATATATTGTGG
75966083 CCGAATGACC
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
99 5 0.05
100 103 0.95
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (99 bp):
ATATATATATTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
AAGCCGAATGGCTAACATGAAATATGTATGAGAT
Found at i:75966263 original size:37 final size:37
Alignment explanation
Indices: 75966208--75966317 Score: 184
Period size: 37 Copynumber: 3.0 Consensus size: 37
75966198 GGAAATATAT
75966208 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75966245 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75966282 TTCGGGTAAGACCCGATGACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
75966318 TCGAGCTAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75969505 original size:37 final size:36
Alignment explanation
Indices: 75969455--75969541 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
75969445 TACGAAGTCT
75969455 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
75969491 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
75969528 TCACCCGGAACATA
1 T-ACCCGG-ACATA
75969542 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:75970166 original size:49 final size:49
Alignment explanation
Indices: 75969610--75970164 Score: 833
Period size: 49 Copynumber: 11.3 Consensus size: 49
75969600 TTTACCACAT
* * * *
75969610 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
* *
75969659 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
* * *
75969708 ATATACATATACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
* * *
75969757 ATATACATATACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
* * *
75969806 ATATACATATACTTTT-GCATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACA-TTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
* * * *
75969855 ATATACATATACTTTCGCATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
*
75969904 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
* *
75969953 ATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
*
75970002 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
* * *
75970051 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
* *
75970100 ATATACATACATTTTCACATTCATCACATCGACCATTAGGCCTCATCAC
1 ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
*
75970149 ATATATATACATTTTC
1 ATATACATACATTTTC
75970165 ACGAATCTTG
Statistics
Matches: 477, Mismatches: 27, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
48 3 0.01
49 471 0.99
50 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (49 bp):
ATATACATACATTTTCGCATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:75974145 original size:79 final size:79
Alignment explanation
Indices: 75974008--75974190 Score: 296
Period size: 79 Copynumber: 2.3 Consensus size: 79
75973998 CCAGCATGAT
* * *
75974008 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
75974073 CATCACTAGCACGAA
65 CATCACTAGCACGAA
*
75974088 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCA-GAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
*
75974152 CATCACTAGCACGGA
65 CATCACTAGCACGAA
75974167 TGCTCTTCGGAACTTAGCCGGATA
1 TGCTCTTCGGAACTTAGCCGGATA
75974191 AAACCACAAG
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
78 7 0.07
79 58 0.60
80 31 0.32
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
TGCTCTTCGGAACTTAGCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
ATCACTAGCACGAA
Found at i:75974214 original size:79 final size:79
Alignment explanation
Indices: 75974040--75974215 Score: 257
Period size: 79 Copynumber: 2.2 Consensus size: 79
75974030 ATGCATCACT
75974040 AGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAG
1 AGCAC-AATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAG
* * *
75974105 TCCGGATACATCACT
65 TCCGGATAAACCACA
* * *
75974120 AGCAGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGGATGCTCTTCGGAACTTAG-
1 AGCACAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGT
75974184 CCGGATAAAACCACA
66 CCGGAT-AAACCACA
75974199 AGCACAATTGC-CTTCGG
1 AGCACAA-TGCTCTTCGG
75974216 GTCTTAACCC
Statistics
Matches: 87, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
78 6 0.07
79 74 0.85
80 7 0.08
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (79 bp):
AGCACAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAGT
CCGGATAAACCACA
Found at i:75974215 original size:39 final size:40
Alignment explanation
Indices: 75974008--75974190 Score: 298
Period size: 40 Copynumber: 4.6 Consensus size: 40
75973998 CCAGCATGAT
* * * *
75974008 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
75974048 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
75974088 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCA-GAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
75974127 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGGA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
75974167 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
75974191 AAACCACAAG
Statistics
Matches: 135, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 45 0.33
40 90 0.67
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:75974253 original size:40 final size:40
Alignment explanation
Indices: 75974199--75974311 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 40
75974189 TAAAACCACA
* * *
75974199 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATA-ACAACT
1 AGCACAAATACCTTCGGGTCTTAGCCCGGGTATATAC-ACT
* *
75974239 CA-CACAAATACCTTCGGGTCTTAGCCCGGATATATTCACT
1 -AGCACAAATACCTTCGGGTCTTAGCCCGGGTATATACACT
* * *
75974279 AGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 AGCACAAATACCTTCGGGTCTTAGCCCGGGTAT
75974312 CATTCAAATG
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 58 0.95
41 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
AGCACAAATACCTTCGGGTCTTAGCCCGGGTATATACACT
Found at i:75974254 original size:119 final size:118
Alignment explanation
Indices: 75974010--75974304 Score: 289
Period size: 119 Copynumber: 2.5 Consensus size: 118
75974000 AGCATGATTG
* * *
75974010 CTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATAAA
* * ** *
75974075 TCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCAGAATG
65 CCACAAGCACGAATGCTCCTCGGAACTTAACCCGGATACATCACTAGCAGAATA
* * *
75974129 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGGATGCTCTTCGGAACTTAGCCGGATAAAA
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGAT-AAA
* **
75974194 CCACAAGCAC-AATTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCAC-A-CA-AATA
65 CCACAAGCACGAA-TGCTCCTCGGAACTTAACCC-GG-AT-AC-A-TCACTAGCAGAATA
* * ** *
75974249 C-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAATGC-CTTCGGGACTTAGCC
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATGCTCTTCGGAACTTAGCC
75974305 CGGGTATCAT
Statistics
Matches: 146, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
118 19 0.13
119 98 0.67
120 19 0.13
121 4 0.03
122 2 0.01
123 4 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (118 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATAAAC
CACAAGCACGAATGCTCCTCGGAACTTAACCCGGATACATCACTAGCAGAATA
Found at i:75976220 original size:37 final size:36
Alignment explanation
Indices: 75976170--75976256 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
75976160 TACGAAGTCT
75976170 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
75976206 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
75976243 TCACCCGGAACATA
1 T-ACCCGG-ACATA
75976257 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:75976929 original size:49 final size:49
Alignment explanation
Indices: 75976325--75976927 Score: 902
Period size: 49 Copynumber: 12.3 Consensus size: 49
75976315 TTTACCACAT
* * * *
75976325 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
75976374 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
*
75976423 ATATACATATACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
*
75976472 ATATACATATACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
*
75976521 ATATACATATACTTT-GCATTCACCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
* *
75976569 ATATACATATACTTTCGCATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
* *
75976618 ATATACATATACTTTCGCATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
* * *
75976667 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
* * * *
75976716 ATATATATACATTTTCGCATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
* * * *
75976765 ATATACATACATTTTCGCATTCATCGCATCGACCATTAGGCCTCATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
* * * * *
75976814 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
* * * *
75976863 ATATACATACATTTTCACATTCATCACATCGACCATTAGGCCTCATCAC
1 ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
* *
75976912 ATATATATACATTTTC
1 ATATACATACACTTTC
75976928 ACGAATCTTG
Statistics
Matches: 526, Mismatches: 27, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
48 48 0.09
49 478 0.91
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
ATATACATACACTTTCGCATTCACCACATCGGCCATTAGGCCTCATCAC
Found at i:75980046 original size:37 final size:36
Alignment explanation
Indices: 75979966--75980052 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
75979956 TACGAAGTCT
*
75979966 TACCTGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
75980002 GTTCCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
75980039 TCACCCGGAACATA
1 T-ACCCGG-ACATA
75980053 TTTCCAAGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
36 1 0.02
37 39 0.87
38 5 0.11
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:75980246 original size:49 final size:49
Alignment explanation
Indices: 75980121--75980326 Score: 331
Period size: 49 Copynumber: 4.1 Consensus size: 49
75980111 TTTACCACAT
* *
75980121 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
*
75980170 ATATATATATATATATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ----ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
75980223 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
* *
75980272 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
75980321 ATATAT
1 ATATAT
75980327 TATTATGTAC
Statistics
Matches: 147, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
49 101 0.69
53 46 0.31
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:75990889 original size:46 final size:46
Alignment explanation
Indices: 75990839--75990964 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
75990829 TGGTTGAGCA
*
75990839 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
75990885 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
75990931 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75990965 GGGGCGGGCT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:75997157 original size:29 final size:29
Alignment explanation
Indices: 75997118--75997196 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75997108 CTTAATAATC
*
75997118 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75997148 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75997177 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75997197 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:76004227 original size:29 final size:29
Alignment explanation
Indices: 76004188--76004266 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
76004178 CTTAATAATC
*
76004188 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
76004218 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
76004247 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
76004267 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:76008328 original size:22 final size:23
Alignment explanation
Indices: 76008303--76008351 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
76008293 TGCCGAATTT
**
76008303 CCTTCACCCTATTA-CCGAAAAC
1 CCTTCACCCTAAAAGCCGAAAAC
**
76008325 CCTTTTCCCTAAAAGCCGAAAAC
1 CCTTCACCCTAAAAGCCGAAAAC
76008348 CCTT
1 CCTT
76008352 TTGTTTCCTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.31, C:0.39, G:0.06, T:0.24
Consensus pattern (23 bp):
CCTTCACCCTAAAAGCCGAAAAC
Found at i:76009328 original size:29 final size:29
Alignment explanation
Indices: 76009296--76009388 Score: 125
Period size: 29 Copynumber: 3.2 Consensus size: 29
76009286 GAAAGGTGAT
* *
76009296 TTGGGCCTAATGGGCCTTATGAATATGAA
1 TTGGGCCTGATGGGCCATATGAATATGAA
76009325 TTGGGCCTGATGGGCCATATGAATATGAA
1 TTGGGCCTGATGGGCCATATGAATATGAA
* * * *
76009354 TTGGGGCTGATGGGCTATATAAATAAG-A
1 TTGGGCCTGATGGGCCATATGAATATGAA
76009382 TTGGGCC
1 TTGGGCC
76009389 AAGTGGACCA
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 7 0.12
29 50 0.88
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (29 bp):
TTGGGCCTGATGGGCCATATGAATATGAA
Found at i:76011467 original size:15 final size:15
Alignment explanation
Indices: 76011444--76011478 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
76011434 CCAAGGGAAG
*
76011444 TATACGGGTGCAAGT
1 TATATGGGTGCAAGT
76011459 TATATGGGTGCAAGT
1 TATATGGGTGCAAGT
76011474 TATAT
1 TATAT
76011479 AGATGCTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.09, G:0.29, T:0.34
Consensus pattern (15 bp):
TATATGGGTGCAAGT
Found at i:76017104 original size:28 final size:29
Alignment explanation
Indices: 76017073--76017133 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
76017063 GTGAGCAAGA
76017073 ATAT-AAGGTAATTTGGGCCTAACGGGCC
1 ATATAAAGGTAATTTGGGCCTAACGGGCC
* * *
76017101 ATATAAAGTTGATTTGGGCCTAATGGGCC
1 ATATAAAGGTAATTTGGGCCTAACGGGCC
76017130 ATAT
1 ATAT
76017134 GAATATGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
ATATAAAGGTAATTTGGGCCTAACGGGCC
Found at i:76017117 original size:29 final size:29
Alignment explanation
Indices: 76017083--76017218 Score: 138
Period size: 29 Copynumber: 4.8 Consensus size: 29
76017073 ATATAAGGTA
*
76017083 ATTTGGGCCTAACGGGCCATATAAAGT-TG
1 ATTTGGGCCTAATGGGCCATATAAA-TATG
*
76017112 ATTTGGGCCTAATGGGCCATATGAATATG
1 ATTTGGGCCTAATGGGCCATATAAATATG
* * *
76017141 AATTGGGCCTGATGGGCCATATGAATATG
1 ATTTGGGCCTAATGGGCCATATAAATATG
* * *
76017170 AATTAGG-CTGATGGGCCATATAAATGA-G
1 ATTTGGGCCTAATGGGCCATATAAAT-ATG
76017198 A-TTGGGCC-AAGTGGGCCATAT
1 ATTTGGGCCTAA-TGGGCCATAT
76017219 GCATGTATGT
Statistics
Matches: 95, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
27 5 0.05
28 31 0.33
29 59 0.62
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
ATTTGGGCCTAATGGGCCATATAAATATG
Found at i:76020714 original size:67 final size:65
Alignment explanation
Indices: 76020528--76020766 Score: 222
Period size: 67 Copynumber: 3.6 Consensus size: 65
76020518 TCTCTTATAC
* *
76020528 ACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATT-TATCTCGTAGCTCTCTTGTCT
1 ACATGGTGTACACTCAGTACCACCCATGTGACCTAGCTACATTATATCTCGTAGCTCTCTTGTCT
* * * *
76020591 ACATGGTGT-C-CTTCACCTGGAACCACGCATGCGACCTAGCTACA-TATATCCCGTAGCTCTCT
1 ACATGGTGTACAC-TCA----GTACCACCCATGTGACCTAGCTACATTATATCTCGTAGCTCTCT
76020653 TGTCT
61 TGTCT
* * *
76020658 ACATGGTGTACACAT-AGTATCACCCATGTGACCTAGCTACATCTAATGTCTTGTAGCTCTCTTG
1 ACATGGTGTACAC-TCAGTACCACCCATGTGACCTAGCTACAT-T-ATATCTCGTAGCTCTCTTG
76020722 TAC-
63 T-CT
* * * **
76020725 ACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACAT
1 ACATGGTGTACACTCAGTACCACCCATGTGACCTAGCTACAT
76020767 ACTATCTGTA
Statistics
Matches: 142, Mismatches: 20, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
61 1 0.01
62 4 0.03
63 8 0.06
64 21 0.15
66 22 0.15
67 81 0.57
68 3 0.02
69 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (65 bp):
ACATGGTGTACACTCAGTACCACCCATGTGACCTAGCTACATTATATCTCGTAGCTCTCTTGTCT
Found at i:76022808 original size:11 final size:11
Alignment explanation
Indices: 76022792--76022817 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
76022782 CGAAGCCCAC
76022792 ATCACAATAAT
1 ATCACAATAAT
76022803 ATCACAATAAT
1 ATCACAATAAT
76022814 ATCA
1 ATCA
76022818 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:76023302 original size:27 final size:27
Alignment explanation
Indices: 76023270--76023873 Score: 391
Period size: 27 Copynumber: 22.5 Consensus size: 27
76023260 ACTACAAGGA
*
76023270 TATTTCGATAATTTTACAAATTAGGGG
1 TATTTCGATAATTTTACAAATTCGGGG
* * *
76023297 TGTTTCGGTAATTTAACAAATT-GAGGG
1 TATTTCGATAATTTTACAAATTCG-GGG
76023324 TATTTC-AGTAATTTTACAAATT-GAGGG
1 TATTTCGA-TAATTTTACAAATTCG-GGG
* * *
76023351 TGTTT-TAGTAATTTTAC-AACTCGTGGG
1 TATTTCGA-TAATTTTACAAATTCG-GGG
*
76023378 TGTTTCGATAATTTTACAAA-TCGAGGG
1 TATTTCGATAATTTTACAAATTCG-GGG
* * *
76023405 TGTTTC-AGTAATTTCACAGA-TCGGGGG
1 TATTTCGA-TAATTTTACAAATTC-GGGG
*
76023432 TATTTCGATAATTTTACAAA-TCAAGGG
1 TATTTCGATAATTTTACAAATTC-GGGG
*
76023459 TATTTC-AGTAATTTCACAAA--CGAGGG
1 TATTTCGA-TAATTTTACAAATTCG-GGG
* * * * * * *
76023485 TTTTTTGGTAATTTTA-GACTACAAGGG
1 TATTTCGATAATTTTACAAATTC-GGGG
*
76023512 TATTTCAATAATTTTACAAA-TCGGGGG
1 TATTTCGATAATTTTACAAATTC-GGGG
* ***
76023539 TGTTTCGATAATTTTACAAATAAAGGG
1 TATTTCGATAATTTTACAAATTCGGGG
*
76023566 TATTTTTG-TAATTTTACAAA-TCGAGGG
1 TA-TTTCGATAATTTTACAAATTCG-GGG
76023593 TATTTCGATAATTTTACAAATT-GAGGG
1 TATTTCGATAATTTTACAAATTCG-GGG
* * *
76023620 TGTTTCGGTAATATTACAAATT-GAGGG
1 TATTTCGATAATTTTACAAATTCG-GGG
* *
76023647 TGTTT-TAGTAATTTTACAAA-TCGGGG
1 TATTTCGA-TAATTTTACAAATTCGGGG
*
76023673 TATTTCGATAATTTTACAAATTAGGGG
1 TATTTCGATAATTTTACAAATTCGGGG
* *
76023700 TGTTTCGATAATTTTACAAA-TCGAGG
1 TATTTCGATAATTTTACAAATTCGGGG
* *
76023726 TATTTTGGTAATTTTACAAA-TCGAGGG
1 TATTTCGATAATTTTACAAATTCG-GGG
*
76023753 TATTTCGATAATTTCAC-AATT-GAGGG
1 TATTTCGATAATTTTACAAATTCG-GGG
*
76023779 TATTTCGGTAATTTTACAAA-TCGGGAG
1 TATTTCGATAATTTTACAAATTCGGG-G
* *
76023806 TATTTTGGTAATTTTACAAA-TCGAGGG
1 TATTTCGATAATTTTACAAATTCG-GGG
** * * *
76023833 TGCTTAGGTAATTTTACAAACT-GAGGG
1 TATTTCGATAATTTTACAAATTCG-GGG
76023860 TATTTC-AGTAATTT
1 TATTTCGA-TAATTT
76023874 CTCTTTATTA
Statistics
Matches: 468, Mismatches: 76, Indels: 66
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.00
26 94 0.20
27 359 0.77
28 14 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
TATTTCGATAATTTTACAAATTCGGGG
Found at i:76023336 original size:54 final size:54
Alignment explanation
Indices: 76023270--76023873 Score: 513
Period size: 54 Copynumber: 11.3 Consensus size: 54
76023260 ACTACAAGGA
* * *
76023270 TATTTCGATAATTTTACAAATTAGGGGTGTTTCGGTAATTTAACAAATTGAGGG
1 TATTTCGATAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAATCGAGGG
* * *
76023324 TATTTC-AGTAATTTTACAAATTGAGGGTGT-TTT-AGTAATTTTACAACTCGTGGG
1 TATTTCGA-TAATTTTACAAATT-AGGG-GTATTTCGGTAATTTTACAAATCGAGGG
* * * * * * *
76023378 TGTTTCGATAATTTTACAAA-TCGAGGGTGTTTCAGTAATTTCACAGATCGGGGG
1 TATTTCGATAATTTTACAAATTAG-GGGTATTTCGGTAATTTTACAAATCGAGGG
* * * *
76023432 TATTTCGATAATTTTACAAATCAAGGGTATTTCAGTAATTTCACAAA-CGAGGG
1 TATTTCGATAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAATCGAGGG
* * * * * * * ** *
76023485 TTTTTTGGTAATTTTA-GACTACAAGGGTATTTCAATAATTTTACAAATCGGGGG
1 TATTTCGATAATTTTACAAAT-TAGGGGTATTTCGGTAATTTTACAAATCGAGGG
* * * **
76023539 TGTTTCGATAATTTTACAAATAAAGGGTATTTTTGTAATTTTACAAATCGAGGG
1 TATTTCGATAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAATCGAGGG
* * *
76023593 TATTTCGATAATTTTACAAATT-GAGGGTGTTTCGGTAATATTACAAATTGAGGG
1 TATTTCGATAATTTTACAAATTAG-GGGTATTTCGGTAATTTTACAAATCGAGGG
* * * * *
76023647 TGTTT-TAGTAATTTTACAAA-TCGGGGTATTTCGATAATTTTACAAAT-TAGGGG
1 TATTTCGA-TAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAATCGA-GGG
* * * *
76023700 TGTTTCGATAATTTTACAAA-TCGAGGTATTTTGGTAATTTTACAAATCGAGGG
1 TATTTCGATAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAATCGAGGG
*
76023753 TATTTCGATAATTTCAC-AATT-GAGGGTATTTCGGTAATTTTACAAATCG-GGAG
1 TATTTCGATAATTTTACAAATTAG-GGGTATTTCGGTAATTTTACAAATCGAGG-G
* * * ** *
76023806 TATTTTGGTAATTTTACAAA-TCGAGGGTGCTTAGGTAATTTTACAAA-CTGAGGG
1 TATTTCGATAATTTTACAAATTAG-GGGTATTTCGGTAATTTTACAAATC-GAGGG
76023860 TATTTC-AGTAATTT
1 TATTTCGA-TAATTT
76023874 CTCTTTATTA
Statistics
Matches: 458, Mismatches: 67, Indels: 50
0.80 0.12 0.09
Matches are distributed among these distances:
52 11 0.02
53 176 0.38
54 257 0.56
55 12 0.03
56 2 0.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
TATTTCGATAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAATCGAGGG
Found at i:76026865 original size:27 final size:27
Alignment explanation
Indices: 76026828--76026882 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
76026818 GCGTAGAATG
76026828 TGTAAGAGTCTAGCTATACATGCCATA
1 TGTAAGAGTCTAGCTATACATGCCATA
76026855 TGTAAGAGTCTAGCTATACATGCCATA
1 TGTAAGAGTCTAGCTATACATGCCATA
76026882 T
1 T
76026883 ACGAATTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (27 bp):
TGTAAGAGTCTAGCTATACATGCCATA
Found at i:76029067 original size:37 final size:37
Alignment explanation
Indices: 76029026--76029099 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
76029016 ACAAGTATCC
76029026 TTTGCCAATGACTGATGACTTGTTATTTTGGGTATGG
1 TTTGCCAATGACTGATGACTTGTTATTTTGGGTATGG
* *
76029063 TTTGCTAATGATTGATGACTTGTTATTTTGGGTATGG
1 TTTGCCAATGACTGATGACTTGTTATTTTGGGTATGG
76029100 ACAGGTTGAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.19, C:0.08, G:0.27, T:0.46
Consensus pattern (37 bp):
TTTGCCAATGACTGATGACTTGTTATTTTGGGTATGG
Found at i:76029629 original size:606 final size:606
Alignment explanation
Indices: 76028477--76029668 Score: 1746
Period size: 606 Copynumber: 2.0 Consensus size: 606
76028467 ATGAATTCGA
* * *
76028477 TGTTATTTTGGGTATGGACTGCTTAACATTGCATTATGCCATAGTAAATTATAATCAGAAAAATA
1 TGTTATTTTGGGTATGGACAGCTTAACACTGCATGATGCCATAGTAAATTATAATCAGAAAAATA
* * * *
76028542 TTAAATTAAAATGTGAAAATGGTGAGGTTCTTTGGGTTGAAGCCGACGAATCAAGATAATTGCCT
66 TTAAATTAAAATGTAAAAATGGTGAGGTTATTCGGGTTGAAACCGACGAATCAAGATAATTGCCT
** *
76028607 ATTGTGATTTCCTCTATATCTGCTTAGAAGTATGTAAGGAAATATTGTAAAGCTTATCTTGCTTA
131 ACAGTGATTTCCTCTATATCTGCTCAGAAGTATGTAAGGAAATATTGTAAAGCTTATCTTGCTTA
* * * * *
76028672 TGTGTTGATTACTTAAATGTCTGAATTGAAAATTGAATCAGTGTCGGCAGTCTGTGAATATCTGG
196 TGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCCGACAGTCTGTGAATATCTGG
* *
76028737 ATGTGTTTCCAGAAGAGTTGCCTGGGTTACCTCCAGTCAGAGAAGTGGAGTTTGCTATTGGTTTG
261 ATGTGTTTCCAGAAGAGTTGCCTGGGTTACCTCCAGTCAGAGAAGTGGAGTTTGCTATTGATTAG
* * * *
76028802 TTACCTTGGACTTCACTGATATCGATTACTCCATATAGGATGGCTCCAACTGAATTGAAAGAATT
326 TTACCTGGGACTTCACCGATATCAATTACTCCATATAGGATGGCTCCAACTAAATTGAAAGAATT
* * *
76028867 GGAAGCTCAGTTGCACAAGTTGACAGATAAGGGTTTTGTGAGACTGAGTTTTTCTCCTTATGGTG
391 GAAAGCTCAGTTGCACAAGTTGACAGATAAGGGTTTTGCGAGACTGAGTTTTTCTCCTTAGGGTG
* * * *
76028932 CTCTAGTATTATTTGTAAAGAATAAAGACGGATCTATAAGACTTTGTATCGATTACCGGCAATTC
456 CTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATAAGACTTTGTATCGATTACCGACAACTC
*
76028997 AACAAGGTGACTATAAAGAACAAGTATCCTTTGCCAATGACTGATGACTTGTTATTTTGGGTATG
521 AACAAGGTGACTATAAAGAACAAGTATCCTTTGCCAATGACTGATGAATTGTTATTTTGGGTATG
76029062 GTTTGCTAATGATTGATGACT
586 GTTTGCTAATGATTGATGACT
* * * *
76029083 TGTTATTTTGGGTATGGACAGGTTGACACTGCATGATGCCATAGTAAATTATAGA-CATAAAACT
1 TGTTATTTTGGGTATGGACAGCTTAACACTGCATGATGCCATAGTAAATTATA-ATCAGAAAAAT
* * * * *
76029147 ATTGAATTGAAGTGTAAAAATGGTGAGGTTATTCGGGTTGAAACTGATGAATCAAG-TGAATTGC
65 ATTAAATTAAAATGTAAAAATGGTGAGGTTATTCGGGTTGAAACCGACGAATCAAGAT-AATTGC
** * * * *
76029211 CTACAGTGATTTTGTCTATGTTTGCTCAGAGGTATGTAAGG-AATGGTTGTAAAGCTTATCTTGC
129 CTACAGTGATTTCCTCTATATCTGCTCAGAAGTATGTAAGGAAAT-ATTGTAAAGCTTATCTTGC
* * * * *
76029275 TTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCCGATAGTTTGTGATTTTT
193 TTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCCGACAGTCTGTGAATATC
* * * *
76029340 TGGATGTGTTTCCAGACGAGTTGCCTGGGTTGCCTCC-GATCAGAGAGGTTGAGTTTGCTATTGA
258 TGGATGTGTTTCCAGAAGAGTTGCCTGGGTTACCTCCAG-TCAGAGAAGTGGAGTTTGCTATTGA
* * *
76029404 TATAG-TACCTGGGACTTCACCGATATCAATTGCTCCGTATAGGATGGCTCCGACTAAATTGAAA
322 T-TAGTTACCTGGGACTTCACCGATATCAATTACTCCATATAGGATGGCTCCAACTAAATTGAAA
**
76029468 GAATTGAAAGCTCAGTTGCACAAGTTGGTAGATAAGGGTTTTGCGAGACTGAGTTTTTCTCCTTA
386 GAATTGAAAGCTCAGTTGCACAAGTTGACAGATAAGGGTTTTGCGAGACTGAGTTTTTCTCCTTA
* *
76029533 GGGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATTAGACTTTGTATCGATTACTGAC
451 GGGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATAAGACTTTGTATCGATTACCGAC
* *
76029598 AGCTCAACAAGGTGACTATAAAGAACAAGTATCCTTTGCCAATGATTGATGAATTGTTATTTTGG
516 AACTCAACAAGGTGACTATAAAGAACAAGTATCCTTTGCCAATGACTGATGAATTGTTATTTTGG
76029663 GTATGG
581 GTATGG
76029669 ACAGGTTGAC
Statistics
Matches: 519, Mismatches: 62, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
605 5 0.01
606 511 0.98
607 3 0.01
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (606 bp):
TGTTATTTTGGGTATGGACAGCTTAACACTGCATGATGCCATAGTAAATTATAATCAGAAAAATA
TTAAATTAAAATGTAAAAATGGTGAGGTTATTCGGGTTGAAACCGACGAATCAAGATAATTGCCT
ACAGTGATTTCCTCTATATCTGCTCAGAAGTATGTAAGGAAATATTGTAAAGCTTATCTTGCTTA
TGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCCGACAGTCTGTGAATATCTGG
ATGTGTTTCCAGAAGAGTTGCCTGGGTTACCTCCAGTCAGAGAAGTGGAGTTTGCTATTGATTAG
TTACCTGGGACTTCACCGATATCAATTACTCCATATAGGATGGCTCCAACTAAATTGAAAGAATT
GAAAGCTCAGTTGCACAAGTTGACAGATAAGGGTTTTGCGAGACTGAGTTTTTCTCCTTAGGGTG
CTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATAAGACTTTGTATCGATTACCGACAACTC
AACAAGGTGACTATAAAGAACAAGTATCCTTTGCCAATGACTGATGAATTGTTATTTTGGGTATG
GTTTGCTAATGATTGATGACT
Found at i:76030151 original size:569 final size:569
Alignment explanation
Indices: 76029063--76030792 Score: 2832
Period size: 569 Copynumber: 3.0 Consensus size: 569
76029053 TTGGGTATGG
*
76029063 TTTGCTAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGCATGATGCCATAGT
1 TTTGCCAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGCATGATGCCATAGT
*
76029128 AAATTATAGACATAAAACTATTGAATTGAAGTGTAAAAATGGTGAGGTTATTCGGGTTGAAACTG
66 AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
*
76029193 ATGAATCAAGTGAATTGCCTACAGTGATTTTGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
131 ATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
76029258 TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCC
196 TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCC
* * * *
76029323 GATAGTTTGTGATTTTTTGGATGTGTTTCCAGACGAGTTGCCTGGGTTGCCTCCGATCAGAGAGG
261 GATAGTCTGTGAGTTTCTGGATGTGTTTCCAGACGAGTTGCCTGGGTTACCTCCGATCAGAGAGG
76029388 TTGAGTTTGCTATTGATATAGTACCTGGGACTTCACCGATATCAATTGCTCCGTATAGGATGGCT
326 TTGAGTTTGCTATTGATATAGTACCTGGGACTTCACCGATATCAATTGCTCCGTATAGGATGGCT
*
76029453 CCGACTAAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGGTAGATAAGGGTTTTGCGAGACT
391 CCGACTGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGGTAGATAAGGGTTTTGCGAGACT
*
76029518 GAGTTTTTCTCCTTAGGGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATTAGACTTT
456 GAGTTTTTCTCCTTAGGGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATGAGACTTT
*
76029583 GTATCGATTACTGACAGCTCAACAAGGTGACTATAAAGAACAAGTATCC
521 GTATCGATTACCGACAGCTCAACAAGGTGACTATAAAGAACAAGTATCC
* *
76029632 TTTGCCAATGATTGATGAATTGTTATTTTGGGTATGGACAGGTTGACACTGTATGATGCCATAGT
1 TTTGCCAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGCATGATGCCATAGT
76029697 AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
66 AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
76029762 ATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
131 ATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
76029827 TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCC
196 TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCC
* * *
76029892 GGTAGTCTGTGAGTTTCTAGATGTGTTTCCAAACGAGTTGCCTGGGTTACCTCCGATCAGAGAGG
261 GATAGTCTGTGAGTTTCTGGATGTGTTTCCAGACGAGTTGCCTGGGTTACCTCCGATCAGAGAGG
76029957 TTGAGTTTGCTATTGATATAGTACCTGGGACTTCACCGATATCAATTGC-CCTGTATAGGATGGC
326 TTGAGTTTGCTATTGATATAGTACCTGGGACTTCACCGATATCAATTGCTCC-GTATAGGATGGC
* * *
76030021 TCCGACTGAATTGAAAGAATTGAAAGCTCAATTGCACAAGTTGGCAGATAAGGGTTTTACGAGAC
390 TCCGACTGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGGTAGATAAGGGTTTTGCGAGAC
*
76030086 TGAGTTTTTCTCCTTAGAGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATGAGACTT
455 TGAGTTTTTCTCCTTAGGGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATGAGACTT
76030151 TGTATCGATTACCGGA-AGCTCAACAAGGTGACTATAAAGAACAAGTATCC
520 TGTATCGATTACC-GACAGCTCAACAAGGTGACTATAAAGAACAAGTATCC
* *
76030201 TTTTCCAATGATTGATGACTTGTTATTTTGGGTATAGACAGGTTGACACTGCATGATGCCATAGT
1 TTTGCCAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGCATGATGCCATAGT
* * *
76030266 AAATTATAGACATAAAACAATTGAATTGAAGTGTGAAAATTGAGAGGTTATTCGGGTTGAAACTG
66 AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
* * * * *
76030331 ATGAATCAAGTGAATTGCCTACTGTGATTTCGTCTATGTTTTCTCAGAAG-ACGTAAGGAAAGGT
131 ATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
* *
76030395 TGTGAAA-CTTATCTTGCTTATGTGTTGAATACTAAAATGTCTAAATTGAAAATTGAATCAGTGC
196 TGT-AAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGC
* * * * *
76030459 CGATAGTCTGAGAGTATCCGGATGTGTTTCCAGACGAGTTGCTTGGGTTACCTCCGATTAGAGAG
260 CGATAGTCTGTGAGTTTCTGGATGTGTTTCCAGACGAGTTGCCTGGGTTACCTCCGATCAGAGAG
* * * *
76030524 GTTGAGTTTGCTATTGATTTAGTACCTAGGACTTCACCGATATCGATTGCTCCGTATAGGATAGC
325 GTTGAGTTTGCTATTGATATAGTACCTGGGACTTCACCGATATCAATTGCTCCGTATAGGATGGC
* * * *
76030589 TCTGACAGAATTGAAAGAATTGAAAGCTCAGTTGCA-AGAGTTGATAGATAAAGGTTTTGCGAGA
390 TCCGACTGAATTGAAAGAATTGAAAGCTCAGTTGCACA-AGTTGGTAGATAAGGGTTTTGCGAGA
* * * * *
76030653 CCGAGTTTTTCTCCCTT-GGGTGCT-TCACTGTTATTTGTAAAGAAGAAAGAC-AGATCTATGAG
454 CTGAGTTTTTCT-CCTTAGGGTGCTCT-AGTATTATTTGTAAAGAATAAAGACGA-ATCAATGAG
* *
76030715 ACTTTGTATCGATTACCGACTA-CTTAACAAGGTGACTATTAAGAACAAGTATCC
516 ACTTTGTATCGATTACCGAC-AGCTCAACAAGGTGACTATAAAGAACAAGTATCC
* *
76030769 TTTGCCGA-GAACTGATGACTTGTT
1 TTTGCCAATG-ATTGATGACTTGTT
76030793 TGATCATATG
Statistics
Matches: 1087, Mismatches: 63, Indels: 23
0.93 0.05 0.02
Matches are distributed among these distances:
567 6 0.01
568 355 0.33
569 724 0.67
570 2 0.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (569 bp):
TTTGCCAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGCATGATGCCATAGT
AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
ATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCC
GATAGTCTGTGAGTTTCTGGATGTGTTTCCAGACGAGTTGCCTGGGTTACCTCCGATCAGAGAGG
TTGAGTTTGCTATTGATATAGTACCTGGGACTTCACCGATATCAATTGCTCCGTATAGGATGGCT
CCGACTGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGGTAGATAAGGGTTTTGCGAGACT
GAGTTTTTCTCCTTAGGGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATGAGACTTT
GTATCGATTACCGACAGCTCAACAAGGTGACTATAAAGAACAAGTATCC
Found at i:76031858 original size:39 final size:39
Alignment explanation
Indices: 76031797--76031949 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
76031787 ATTTGATGTG
*
76031797 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
76031836 TATTCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
76031875 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * *
76031914 TATCCGGACTTAAGCTCCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
76031950 ATATGTTTAG
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:76037430 original size:39 final size:39
Alignment explanation
Indices: 76037369--76037521 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
76037359 ATTTGATGTG
*
76037369 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
76037408 TATTCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
76037447 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * *
76037486 TATCCGGACTTAAGCTCCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
76037522 ATATGTTTAG
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:76042985 original size:39 final size:39
Alignment explanation
Indices: 76042931--76043096 Score: 242
Period size: 39 Copynumber: 4.2 Consensus size: 39
76042921 ATTTGATGTT
76042931 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
76042970 TATCCGGACTTAGGGTTCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
76043009 TATCCGGACGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCC-G--GACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
76043051 TATCCGGACTTAAGGTCCGCACGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
76043090 TGTCCGG
1 TATCCGG
76043097 GCTAAAGTCC
Statistics
Matches: 115, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 77 0.67
40 1 0.01
41 1 0.01
42 36 0.31
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:76043034 original size:81 final size:81
Alignment explanation
Indices: 76042937--76043096 Score: 257
Period size: 81 Copynumber: 2.0 Consensus size: 81
76042927 TGTTTATCCG
* * * *
76042937 GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTTCGCAGGCTATGTGCT
1 GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCACGCTACGTGCT
*
76043002 GGAATTATATCCGGAC
66 GGAAATATATCCGGAC
*
76043018 GACTTAGGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCACGCTACGTGCT
1 GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCACGCTACGTGCT
*
76043083 GGAAATATGTCCGG
66 GGAAATATATCCGG
76043097 GCTAAAGTCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (81 bp):
GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCACGCTACGTGCT
GGAAATATATCCGGAC
Found at i:76043035 original size:42 final size:42
Alignment explanation
Indices: 76042937--76043059 Score: 200
Period size: 42 Copynumber: 3.0 Consensus size: 42
76042927 TGTTTATCCG
*
76042937 GACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCC-G--
1 GACTTAGGGTCTGCAGGCTATGTGCTGGAATTATATCCGGAC
76042976 GACTTAGGGT-TCGCAGGCTATGTGCTGGAATTATATCCGGAC
1 GACTTAGGGTCT-GCAGGCTATGTGCTGGAATTATATCCGGAC
76043018 GACTTAGGGTCTGCAGGCTATGTGCTGGAATTATATCCGGAC
1 GACTTAGGGTCTGCAGGCTATGTGCTGGAATTATATCCGGAC
76043060 TTAAGGTCCG
Statistics
Matches: 78, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
39 36 0.46
40 1 0.01
42 40 0.51
43 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (42 bp):
GACTTAGGGTCTGCAGGCTATGTGCTGGAATTATATCCGGAC
Found at i:76048117 original size:40 final size:40
Alignment explanation
Indices: 76048058--76048244 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
76048048 CATTGGAATG
* * * *
76048058 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
76048098 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
76048138 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
76048178 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
76048218 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
76048245 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:76048160 original size:80 final size:80
Alignment explanation
Indices: 76048058--76048211 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
76048048 CATTGGAATG
* * ** *
76048058 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
76048123 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
76048138 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
76048203 ATCGTGCGA
66 ATCGTGCGA
76048212 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:76048226 original size:80 final size:80
Alignment explanation
Indices: 76048062--76048244 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
76048052 GGAATGATAT
* ** * *
76048062 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
76048127 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
76048142 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
76048207 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
76048222 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
76048245 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:76048264 original size:80 final size:80
Alignment explanation
Indices: 76048062--76048279 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
76048052 GGAATGATAT
* * * * * * * *
76048062 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
76048126 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
76048142 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
76048207 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
76048222 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
76048280 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:76058205 original size:23 final size:23
Alignment explanation
Indices: 76058166--76058221 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 23
76058156 GATTATGTAG
76058166 AAAGAATAAAGAAATGAA-AAAAA
1 AAAGAA-AAAGAAATGAAGAAAAA
*
76058189 AAAGAAAGAGAATATGAAGAAAAA
1 AAAGAAAAAGAA-ATGAAGAAAAA
76058213 AAAGAAAAA
1 AAAGAAAAA
76058222 AAAAAAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 5 0.17
23 11 0.38
24 13 0.45
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (23 bp):
AAAGAAAAAGAAATGAAGAAAAA
Found at i:76059417 original size:29 final size:29
Alignment explanation
Indices: 76059384--76059448 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
76059374 GTGACGAGAT
*
76059384 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
76059413 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
76059442 CGGCACT
1 TGGCACT
76059449 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:76066103 original size:24 final size:24
Alignment explanation
Indices: 76066063--76066124 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
76066053 GATTATGTAG
76066063 AAAGAATAAAGAAATGAA-AAAAAA
1 AAAGAA-AAAGAAATGAAGAAAAAA
* *
76066087 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAGAAAAAA
*
76066112 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
76066125 AAAAAAAGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.16
24 12 0.38
25 15 0.47
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAGAAAAAA
Done.