Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 245 of 433
Found at i:76331536 original size:29 final size:29
Alignment explanation
Indices: 76331502--76331606 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
76331492 TACTCGATTT
* * *
76331502 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
76331531 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
76331560 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
76331589 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
76331607 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:76331594 original size:58 final size:59
Alignment explanation
Indices: 76331540--76331662 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
76331530 CCGCACACAC
* *
76331540 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * * *
76331598 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
76331656 AGTGCCA
1 AGTGCCA
76331663 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:76331607 original size:29 final size:29
Alignment explanation
Indices: 76331561--76331662 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
76331551 CTTCGAGCTC
76331561 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76331590 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
76331619 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
76331648 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
76331663 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:76337071 original size:39 final size:40
Alignment explanation
Indices: 76336957--76337141 Score: 153
Period size: 40 Copynumber: 4.7 Consensus size: 40
76336947 ACGACTCGCT
** * * **
76336957 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TACTAACTTGCA
* * * *
76336997 CGAATGCCTTCGGGACTTAACCCGGGTTTACTAACTTGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTACTAACTTGCA
* *
76337037 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTACTAACTTGCA
* * * * * *
76337076 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTACTAACTT-GCA
76337117 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76337142 CATCATTCGA
Statistics
Matches: 115, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.26
40 72 0.63
41 11 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTACTAACTTGCA
Found at i:76339758 original size:2 final size:2
Alignment explanation
Indices: 76339751--76339779 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
76339741 GAGACTAGTC
76339751 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
76339780 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76340995 original size:99 final size:101
Alignment explanation
Indices: 76340863--76341063 Score: 271
Period size: 99 Copynumber: 2.0 Consensus size: 101
76340853 TATGTAGCCA
* * *
76340863 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACA
1 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCCGGTACA
** * *
76340926 TGTAGTAGTCTGCACTTAGTATTACACACGTGACCT
66 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
* * * * *
76340962 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCCGGTACA
*
76341027 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT
66 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
76341063 A
1 A
76341064 GCTACATATA
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 42 0.48
100 3 0.03
101 42 0.48
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCCGGTACA
CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
Found at i:76341905 original size:30 final size:30
Alignment explanation
Indices: 76341869--76341929 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
76341859 TCCTTAACTC
76341869 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
76341899 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
76341929 A
1 A
76341930 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:76346519 original size:40 final size:40
Alignment explanation
Indices: 76346434--76346584 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
76346424 AATTGAATGA
* * *
76346434 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
76346474 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
76346515 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
76346554 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
76346585 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:76346598 original size:40 final size:40
Alignment explanation
Indices: 76346471--76346600 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
76346461 ATGCTGGAAA
* * * *
76346471 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
76346511 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
76346551 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
76346591 TTATATCCGG
1 TTATATCCGG
76346601 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:76357049 original size:29 final size:29
Alignment explanation
Indices: 76357016--76357088 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
76357006 GTGACGAGAT
76357016 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76357045 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
76357074 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
76357089 AGCTCGGAGG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76363720 original size:15 final size:15
Alignment explanation
Indices: 76363700--76363730 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76363690 TAATGTTAGT
*
76363700 AAAGAAAGAAAAAGA
1 AAAGAAAAAAAAAGA
76363715 AAAGAAAAAAAAAGA
1 AAAGAAAAAAAAAGA
76363730 A
1 A
76363731 TGCTCATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAAAGA
Found at i:76365160 original size:29 final size:29
Alignment explanation
Indices: 76365127--76365199 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
76365117 GTGACGAGAT
76365127 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
76365156 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
76365185 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
76365200 AAGCTCGGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:76367224 original size:40 final size:40
Alignment explanation
Indices: 76367139--76367289 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
76367129 AATTGAATGA
* * *
76367139 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
76367179 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
76367220 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
76367259 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
76367290 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:76367303 original size:40 final size:40
Alignment explanation
Indices: 76367176--76367305 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
76367166 ATGCTGGAAA
* * * *
76367176 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
76367216 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
76367256 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
76367296 TTATATCCGG
1 TTATATCCGG
76367306 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:76370999 original size:28 final size:28
Alignment explanation
Indices: 76370910--76370985 Score: 143
Period size: 28 Copynumber: 2.7 Consensus size: 28
76370900 CCCTTTAGGG
*
76370910 CCAATCTCATTCATATGGCCCATCAGGC
1 CCAATCACATTCATATGGCCCATCAGGC
76370938 CCAATCACATTCATATGGCCCATCAGGC
1 CCAATCACATTCATATGGCCCATCAGGC
76370966 CCAATCACATTCATATGGCC
1 CCAATCACATTCATATGGCC
76370986 TGTCAAGCCT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.28, C:0.36, G:0.13, T:0.24
Consensus pattern (28 bp):
CCAATCACATTCATATGGCCCATCAGGC
Found at i:76375223 original size:24 final size:23
Alignment explanation
Indices: 76375171--76375223 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 23
76375161 ACAAATAAGA
* *
76375171 AAAAAGTGTTTCGGCACTTAGAG
1 AAAAAGTGTTTCGGCACATAAAG
76375194 AGAAAAGTGTTTCGGCAACATAAAG
1 A-AAAAGTGTTTCGGC-ACATAAAG
76375219 AAAAA
1 AAAAA
76375224 AATGAGGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.04
24 18 0.69
25 7 0.27
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (23 bp):
AAAAAGTGTTTCGGCACATAAAG
Found at i:76386068 original size:16 final size:16
Alignment explanation
Indices: 76386022--76386072 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
76386012 AAATTATATA
76386022 TTCCATCATTCTAATT
1 TTCCATCATTCTAATT
* *
76386038 TTCTATC-TCTTTAATT
1 TTCCATCAT-TCTAATT
76386054 TTCCATCATTCTAATT
1 TTCCATCATTCTAATT
76386070 TTC
1 TTC
76386073 TTTCCACTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 1 0.03
16 27 0.93
17 1 0.03
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.55
Consensus pattern (16 bp):
TTCCATCATTCTAATT
Found at i:76394903 original size:17 final size:17
Alignment explanation
Indices: 76394881--76394914 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
76394871 ATTTCAGCTT
76394881 CAGTTAGAACCCATTCC
1 CAGTTAGAACCCATTCC
76394898 CAGTTAGAACCCATTCC
1 CAGTTAGAACCCATTCC
76394915 TTAGCATGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.35, G:0.12, T:0.24
Consensus pattern (17 bp):
CAGTTAGAACCCATTCC
Found at i:76396144 original size:42 final size:42
Alignment explanation
Indices: 76396087--76396192 Score: 194
Period size: 42 Copynumber: 2.5 Consensus size: 42
76396077 GTGTAGGTTT
76396087 CACACGGCTGAGACACACGCCCATGTTCTAGGCCGTGTGGCA
1 CACACGGCTGAGACACACGCCCATGTTCTAGGCCGTGTGGCA
76396129 CACACGGCTGAGACACACGCCCATGTTCTAGGCCGTGTGGCA
1 CACACGGCTGAGACACACGCCCATGTTCTAGGCCGTGTGGCA
* *
76396171 CACACGGCTAAGACACATGCCC
1 CACACGGCTGAGACACACGCCC
76396193 GTGTCTTGCC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.24, C:0.35, G:0.26, T:0.15
Consensus pattern (42 bp):
CACACGGCTGAGACACACGCCCATGTTCTAGGCCGTGTGGCA
Found at i:76397902 original size:20 final size:20
Alignment explanation
Indices: 76397868--76397917 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
76397858 TTTCCAGCAC
*
76397868 ATTTATTCATAAAATTTTAGA
1 ATTT-TTCATAAAATTTTACA
*
76397889 ATTTTTCATCAAATTTTACA
1 ATTTTTCATAAAATTTTACA
*
76397909 ACTTTTCAT
1 ATTTTTCAT
76397918 TTTAGTCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTTTTCATAAAATTTTACA
Found at i:76400786 original size:45 final size:45
Alignment explanation
Indices: 76400715--76400922 Score: 263
Period size: 45 Copynumber: 4.6 Consensus size: 45
76400705 TGCCAAGATG
* *
76400715 AGTAAGACCATAGCTGAAAGATGCTATAGCATCATGATAAAAATA
1 AGTAAGACCATAGCTGAAAGATGCTATGGCATCATGACAAAAATA
* * * * * **
76400760 ATTAAGATCATAACCGAAAGACGCTATGGCATTGTGACAAAAATA
1 AGTAAGACCATAGCTGAAAGATGCTATGGCATCATGACAAAAATA
* * * *
76400805 AGTAAAACCATAGCTGAAAGATGCTATGGTATCATGATAAAAATG
1 AGTAAGACCATAGCTGAAAGATGCTATGGCATCATGACAAAAATA
* *
76400850 AGTAAGACCATAGCTGAAAGATGCTATGACATCATGACAAAAATG
1 AGTAAGACCATAGCTGAAAGATGCTATGGCATCATGACAAAAATA
* *
76400895 AGTAAGACCATAGCTAAAAGATGTTATG
1 AGTAAGACCATAGCTGAAAGATGCTATG
76400923 ACATGATATG
Statistics
Matches: 137, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 137 1.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (45 bp):
AGTAAGACCATAGCTGAAAGATGCTATGGCATCATGACAAAAATA
Found at i:76401125 original size:27 final size:27
Alignment explanation
Indices: 76401074--76401125 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
76401064 TCATAGATAG
* **
76401074 TTCGATGGGATAATAAACATGAGATTT
1 TTCGATGGGACAATAAACACAAGATTT
*
76401101 TTCGATGGGACATTAAACACAAGAT
1 TTCGATGGGACAATAAACACAAGAT
76401126 AGTCCACTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (27 bp):
TTCGATGGGACAATAAACACAAGATTT
Found at i:76403301 original size:53 final size:54
Alignment explanation
Indices: 76403135--76403334 Score: 190
Period size: 53 Copynumber: 3.7 Consensus size: 54
76403125 GGATGCCAAA
** * * * * * *
76403135 TAAGACCATGCCAAGGTATGGCATTGGCAAGTTCTACAAGGCAAGGAAATCTTG
1 TAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGCAAGGATACCATG
* * * * * *
76403189 TAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAGG-TCCCATG
1 TAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC-AAGGATACCATG
* *
76403244 TAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCAAGGATACCATG
1 TAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGCAAGGATACCATG
** *
76403297 TAAGACCATATCAAGACATGGAAATGGTAAGTT-TATAA
1 TAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAA
76403335 AGGAAAGGTA
Statistics
Matches: 117, Mismatches: 25, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
52 4 0.03
53 45 0.38
54 26 0.22
55 38 0.32
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.22
Consensus pattern (54 bp):
TAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGCAAGGATACCATG
Found at i:76409462 original size:24 final size:24
Alignment explanation
Indices: 76409435--76409483 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
76409425 ATACAATAGA
76409435 AATATCAAAGTAATTAAAAAATTT
1 AATATCAAAGTAATTAAAAAATTT
76409459 AATATCAAAGTAATTAAAAAATTT
1 AATATCAAAGTAATTAAAAAATTT
76409483 A
1 A
76409484 TGTGCATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (24 bp):
AATATCAAAGTAATTAAAAAATTT
Found at i:76409896 original size:6 final size:6
Alignment explanation
Indices: 76409887--76409925 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
76409877 ATATTTATGT
76409887 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AAT
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AAT
76409926 TATTATTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:76414801 original size:27 final size:27
Alignment explanation
Indices: 76414671--76414801 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
76414661 ATTACCAAAG
* * *
76414671 TACCCTTGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
76414698 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
76414725 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
76414752 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
76414779 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
76414802 AAAATACCCT
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:76414809 original size:27 final size:27
Alignment explanation
Indices: 76414642--76415081 Score: 167
Period size: 27 Copynumber: 16.3 Consensus size: 27
76414632 CAATTATTGG
* **
76414642 AATACCCTCGACTTGTAAAATTACCAA
1 AATACCCTCGATTTACAAAATTACCAA
* * * **
76414669 AGTACCCTTGATTTACATAATTACCGT
1 AATACCCTCGATTTACAAAATTACCAA
** * * **
76414696 TTTACCCTCGATTTATAGAATTACCGT
1 AATACCCTCGATTTACAAAATTACCAA
** * * * *
76414723 TTTACCCTCGATTTATAGAATTACTAT
1 AATACCCTCGATTTACAAAATTACCAA
** * * ***
76414750 TTTACCCTTGATTTACAGAATTACTGT
1 AATACCCTCGATTTACAAAATTACCAA
** *
76414777 TTTACCCTCGATTTACAAAATTACTAA
1 AATACCCTCGATTTACAAAATTACCAA
* *
76414804 AATACCCTTGGTTTACAAAATTACCAA
1 AATACCCTCGATTTACAAAATTACCAA
* *
76414831 AATACCCTCGA-TCAGTAAAATTACCAA
1 AATACCCTCGATTTA-CAAAATTACCAA
* * ** * *
76414858 AATACCCT-GGTCT-GTAAATTGCTAA
1 AATACCCTCGATTTACAAAATTACCAA
* **
76414883 AATACCC-CTGGTTTGTAAAATTACCAA
1 AATACCCTC-GATTTACAAAATTACCAA
* **
76414910 AATACCC-CTAGTTTGTAAAATTACCAA
1 AATACCCTCGA-TTTACAAAATTACCAA
* * *** *
76414937 AATAGCACT-GGTTTGTGAAATTACCGA
1 AATA-CCCTCGATTTACAAAATTACCAA
* * **
76414964 AATACTCTCAATTTGTAAAATTACCAA
1 AATACCCTCGATTTACAAAATTACCAA
*
76414991 AATATCCCT-GATTTACAAAATTACAAA
1 AATA-CCCTCGATTTACAAAATTACCAA
* **
76415018 AATACCCTTGACTTT-CTAAAAATTATAAA
1 AATACCCTCGA-TTTAC--AAAATTACCAA
* * * **
76415047 AATACCATTGGTTTACAAAATTACTGA
1 AATACCCTCGATTTACAAAATTACCAA
76415074 AATACCCT
1 AATACCCT
76415082 TGGTTTGTAG
Statistics
Matches: 331, Mismatches: 67, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
25 15 0.05
26 14 0.04
27 271 0.82
28 11 0.03
29 20 0.06
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
AATACCCTCGATTTACAAAATTACCAA
Found at i:76414837 original size:81 final size:81
Alignment explanation
Indices: 76414642--76414838 Score: 205
Period size: 81 Copynumber: 2.4 Consensus size: 81
76414632 CAATTATTGG
* ** * *
76414642 AATACCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACATAATTACCGTTTTACCCTCGA
1 AATACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGA
* * **
76414707 TTTATAGAATTACCGT
66 TTTACAAAATTACCAA
** * * * *** *
76414723 TTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGA
1 AATACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGA
*
76414788 TTTACAAAATTACTAA
66 TTTACAAAATTACCAA
* *
76414804 AATACCCTTGGTTTACAAAATTACCAAAATACCCT
1 AATACCCTCGATTTACAAAATTACCAAAATACCCT
76414839 CGATCAGTAA
Statistics
Matches: 90, Mismatches: 26, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (81 bp):
AATACCCTCGATTTACAAAATTACCAAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGA
TTTACAAAATTACCAA
Found at i:76414864 original size:81 final size:80
Alignment explanation
Indices: 76414779--76415081 Score: 220
Period size: 79 Copynumber: 3.7 Consensus size: 80
76414769 ATTACTGTTT
76414779 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-T
1 TACCCT-GATTT-CAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGAGT
*
76414843 CAGTAAAATTACCAAAA
64 TAGTAAAATTACCAAAA
* * ** * * ** * *
76414860 TACCCTGGTCTGTAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CTAGTTT
1 TACCCTGATTTCAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGAGTTA
76414924 GTAAAATTACCAAAA
66 GTAAAATTACCAAAA
* * ** ** * *** ** *
76414939 TAGCACTGGTTTGTGAAATTACCGAAATACTCTCAATTTGTAAAATTACCAAAATATCCCT-GAT
1 TA-CCCTGATTT-CAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGAG
* *
76415003 TTA-CAAAATTACAAAAA
63 TTAGTAAAATTACCAAAA
* **
76415020 TACCCTTGACTTTCTAAAAATTA-TAAAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 TACCC-TGA-TTTC--AAAATTACT-AAAATACCCTTGGTTTACAAAATTACCAAAATACCCT
76415082 TGGTTTGTAG
Statistics
Matches: 169, Mismatches: 43, Indels: 19
0.73 0.19 0.08
Matches are distributed among these distances:
78 2 0.01
79 58 0.34
80 12 0.07
81 55 0.33
82 13 0.08
83 29 0.17
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (80 bp):
TACCCTGATTTCAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGAGTTA
GTAAAATTACCAAAA
Found at i:76414903 original size:79 final size:81
Alignment explanation
Indices: 76414794--76415025 Score: 242
Period size: 79 Copynumber: 2.9 Consensus size: 81
76414784 TCGATTTACA
* ** *
76414794 AAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAA
1 AAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTAGTAAAATTACCAA
76414858 AATACCCTGGTCTGT-
66 AATACCCTGGTCTGTG
* * *
76414873 AAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAA
1 AAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTAGTAAAATTACCAA
* *
76414937 AATAGCACTGGTTTGTG
66 AATA-CCCTGGTCTGTG
** * ** * * *
76414954 AAATTACCGAAATA-CTCTCAATTTGTAAAATTACCAAAATATCCCT-GATTTA-CAAAATTACA
1 AAATTACTAAAATACCCCT-GGTTTGTAAAATTACCAAAATA-CCCTCGAGTTAGTAAAATTACC
76415016 AAAATACCCT
64 AAAATACCCT
76415026 TGACTTTCTA
Statistics
Matches: 126, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.02
79 58 0.46
80 15 0.12
81 45 0.36
82 6 0.05
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGAGTTAGTAAAATTACCAA
AATACCCTGGTCTGTG
Found at i:76414952 original size:54 final size:54
Alignment explanation
Indices: 76414793--76415102 Score: 214
Period size: 54 Copynumber: 5.7 Consensus size: 54
76414783 CTCGATTTAC
* * * ** * **
76414793 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-GGTTTGT
* * * *
76414847 AAAATTACCAAAATA-CCCTGGTCTGT-AAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGT
* *
76414899 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATAGCACTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGT
* * * * * * **
76414953 GAAATTACCGAAATA-CTCTCAATTTGTAAAATTACCAAAATATCCCTGATTTAC
1 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGGTTTGT
* * * * ** ** **
76415007 AAAATTACAAAAATACCCTTGACTTTCTAAAAATTATAAAAATACCATTGGTTTAC
1 AAAATTACCAAAATACCCCT-AGTTTGT-AAAATTACCAAAATACCCCTGGTTTGT
** * * * *
76415063 AAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
76415103 CACCTTTGTA
Statistics
Matches: 202, Mismatches: 48, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
52 31 0.15
53 23 0.11
54 98 0.49
55 11 0.05
56 39 0.19
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGT
Found at i:76415084 original size:27 final size:27
Alignment explanation
Indices: 76414779--76415087 Score: 180
Period size: 27 Copynumber: 11.4 Consensus size: 27
76414769 ATTACTGTTT
* * *
76414779 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
76414806 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * * *
76414833 TACCC-TCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-CAAAATTACCAAAA
* ** * *
76414860 TACCC-TGGTCT-GTAAATTGCTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* **
76414885 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * **
76414912 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* *** *
76414939 TAGCAC-TGGTTTGTGAAATTACCGAAA
1 TA-CCCTTGGTTTACAAAATTACCAAAA
* *** **
76414966 TACTCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* *
76414993 TATCCC-TGATTTACAAAATTACAAAAA
1 TA-CCCTTGGTTTACAAAATTACCAAAA
* **
76415020 TACCCTTGACTTT-CTAAAAATTATAAAAA
1 TACCCTTG-GTTTAC--AAAATTACCAAAA
* **
76415049 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
76415076 TACCCTTGGTTT
1 TACCCTTGGTTT
76415088 GTAGATTTAC
Statistics
Matches: 226, Mismatches: 45, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
25 15 0.07
26 14 0.06
27 167 0.74
28 10 0.04
29 20 0.09
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCAAAA
Found at i:76415220 original size:25 final size:27
Alignment explanation
Indices: 76415128--76415220 Score: 79
Period size: 27 Copynumber: 3.5 Consensus size: 27
76415118 AAATGACTAA
* * *
76415128 AATACCCCTAT-TAGGTAAAAAGACCAT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
76415155 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
76415182 AATACCCCTGTATGGTAAAATGA-CG-
1 AATACCCCTGTATGGTAAAATGACCGT
76415207 AATACGCCCT-TATG
1 AATAC-CCCTGTATG
76415221 TTCCGTATGA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
25 9 0.16
26 7 0.13
27 38 0.69
28 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:76416096 original size:24 final size:25
Alignment explanation
Indices: 76416014--76416107 Score: 120
Period size: 25 Copynumber: 3.8 Consensus size: 25
76416004 AGGAAGTGCT
*
76416014 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTACCA
* *
76416039 AAAAGGGCTTTACCCTAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
76416064 AAAAGGGCTTTGCCCTAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCA
76416088 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
76416108 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
24 19 0.31
25 41 0.66
26 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:76416120 original size:24 final size:24
Alignment explanation
Indices: 76416014--76416120 Score: 110
Period size: 25 Copynumber: 4.4 Consensus size: 24
76416004 AGGAAGTGCT
*
76416014 AAAAGGG-TTATGCCCCAGTTTACC
1 AAAAGGGCTT-TGCCCCAGTTTATC
* * *
76416038 GAAAAGGGCTTTACCCTAGTTTACC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
76416063 AAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
76416088 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
76416111 AAAAGAGGCT
1 AAAAG-GGCT
76416121 AGGCCTCTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
23 9 0.12
24 21 0.29
25 41 0.56
26 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:76416465 original size:31 final size:31
Alignment explanation
Indices: 76416326--76416466 Score: 246
Period size: 31 Copynumber: 4.5 Consensus size: 31
76416316 CGTTTATAGT
*
76416326 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
76416357 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
76416388 AAAGGCTTCGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
76416419 TAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
76416450 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
76416467 AACCGTTAAA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 103 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:76416526 original size:93 final size:93
Alignment explanation
Indices: 76416327--76416494 Score: 225
Period size: 93 Copynumber: 1.8 Consensus size: 93
76416317 GTTTATAGTA
* * **
76416327 AAGGCTTCGGCCCAATGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAAAAG
1 AAGGCTTCGGCCCAATGATATGATTTATGAAAAGGCTTCGGCCCAGTGATACGATTAAACAAAAG
** *
76416392 GCTTCGGCCCAGAGATATGATTTATGAT
66 GCTTCGGCCCAGAGATATGAACTATAAT
* *
76416420 AAGGCTTCAGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGT-A-ACCG-TTAAACAAAA
1 AAGGCTTCGGCCCAATGATATGATTTATGAAAAGGCTTCGGCCCAGTGATA-CGATTAAACAAAA
76416482 GGCTTCGGCCCAG
65 GGCTTCGGCCCAG
76416495 TATATGCCAA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
91 21 0.31
92 2 0.03
93 45 0.66
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (93 bp):
AAGGCTTCGGCCCAATGATATGATTTATGAAAAGGCTTCGGCCCAGTGATACGATTAAACAAAAG
GCTTCGGCCCAGAGATATGAACTATAAT
Found at i:76419999 original size:20 final size:20
Alignment explanation
Indices: 76419976--76420163 Score: 75
Period size: 20 Copynumber: 9.4 Consensus size: 20
76419966 ATTGCGGATG
76419976 CGTGCCCCTGATTGCACATA
1 CGTGCCCCTGATTGCACATA
* * * *
76419996 CGTGCCCTTGTTTGTAC-TT
1 CGTGCCCCTGATTGCACATA
*
76420015 CG-GTACCCTGATTGCACATA
1 CGTG-CCCCTGATTGCACATA
* * * *
76420035 CGTGCCCTTGTTTGTAC-TT
1 CGTGCCCCTGATTGCACATA
* *
76420054 TGCTACCCCTGATTGCACATA
1 CG-TGCCCCTGATTGCACATA
* * * *
76420075 AGTGCCCCT-ATTTGTACTTT
1 CGTGCCCCTGA-TTGCACATA
* *
76420095 GGTACCCCTGATTGCACATA
1 CGTGCCCCTGATTGCACATA
* * *
76420115 TGTGTCCCC--ATTTGTAC-TT
1 CGTG-CCCCTGA-TTGCACATA
* *
76420134 CAGTACCCCTGATTACACATA
1 C-GTGCCCCTGATTGCACATA
76420155 CGTGCCCCT
1 CGTGCCCCT
76420164 ATTTGTACTT
Statistics
Matches: 115, Mismatches: 40, Indels: 26
0.64 0.22 0.14
Matches are distributed among these distances:
18 1 0.01
19 21 0.18
20 82 0.71
21 11 0.10
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.34
Consensus pattern (20 bp):
CGTGCCCCTGATTGCACATA
Found at i:76420025 original size:39 final size:40
Alignment explanation
Indices: 76419980--76420214 Score: 287
Period size: 40 Copynumber: 5.9 Consensus size: 40
76419970 CGGATGCGTG
*
76419980 CCCCTGATTGCACATACGTGCCCTTGTTTGTACTTCGGTA
1 CCCCTGATTGCACATACGTGCCCTTATTTGTACTTCGGTA
* * *
76420020 -CCCTGATTGCACATACGTGCCCTTGTTTGTACTTTGCTA
1 CCCCTGATTGCACATACGTGCCCTTATTTGTACTTCGGTA
* * *
76420059 CCCCTGATTGCACATAAGTGCCCCTATTTGTACTTTGGTA
1 CCCCTGATTGCACATACGTGCCCTTATTTGTACTTCGGTA
* * *
76420099 CCCCTGATTGCACATATGTGTCCC-CATTTGTACTTCAGTA
1 CCCCTGATTGCACATACGTG-CCCTTATTTGTACTTCGGTA
* * *
76420139 CCCCTGATTACACATACGTGCCCCTATTTGTACTTCAGTA
1 CCCCTGATTGCACATACGTGCCCTTATTTGTACTTCGGTA
* * * *
76420179 CCCCTTACTGCA-ATACATGCCCTTGTTTGTACTTCG
1 CCCCTGATTGCACATACGTGCCCTTATTTGTACTTCG
76420215 ATATCTCTAG
Statistics
Matches: 172, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 60 0.35
40 109 0.63
41 3 0.02
ACGTcount: A:0.18, C:0.30, G:0.16, T:0.35
Consensus pattern (40 bp):
CCCCTGATTGCACATACGTGCCCTTATTTGTACTTCGGTA
Found at i:76420182 original size:20 final size:20
Alignment explanation
Indices: 76420120--76420183 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
76420110 ACATATGTGT
76420120 CCCC-ATTTGTACTTCAGTA
1 CCCCTATTTGTACTTCAGTA
** * *
76420139 CCCCTGA-TTACACAT-ACGTG
1 CCCCT-ATTTGTACTTCA-GTA
76420159 CCCCTATTTGTACTTCAGTA
1 CCCCTATTTGTACTTCAGTA
76420179 CCCCT
1 CCCCT
76420184 TACTGCAATA
Statistics
Matches: 32, Mismatches: 8, Indels: 9
0.65 0.16 0.18
Matches are distributed among these distances:
19 6 0.19
20 24 0.75
21 2 0.06
ACGTcount: A:0.20, C:0.36, G:0.11, T:0.33
Consensus pattern (20 bp):
CCCCTATTTGTACTTCAGTA
Found at i:76428534 original size:28 final size:27
Alignment explanation
Indices: 76428481--76428594 Score: 149
Period size: 28 Copynumber: 4.1 Consensus size: 27
76428471 CATGGCTGCT
* *
76428481 AGAACAGATA-TTGTGACAGAGTCACC
1 AGAACAGATATTTGTGGCAGAGCCACC
*
76428507 AGATACAGATATTTGTGGCAGTGCCACC
1 AGA-ACAGATATTTGTGGCAGAGCCACC
*
76428535 AGAATCAGATATTTGGGGCAGAGCCACC
1 AGAA-CAGATATTTGTGGCAGAGCCACC
*
76428563 AGAAACAGATATTTGTGGCATAGCCACC
1 AG-AACAGATATTTGTGGCAGAGCCACC
76428591 AGAA
1 AGAA
76428595 TGCTTCCTCT
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.04
27 10 0.13
28 62 0.81
29 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
AGAACAGATATTTGTGGCAGAGCCACC
Found at i:76433741 original size:29 final size:29
Alignment explanation
Indices: 76433708--76433867 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
76433698 GTGACGAGAT
76433708 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76433737 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
76433766 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
76433795 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
76433824 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
76433853 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
76433868 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:76439207 original size:12 final size:12
Alignment explanation
Indices: 76439190--76439214 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76439180 CCGTACCTAG
76439190 AAGAAAAAAAAA
1 AAGAAAAAAAAA
76439202 AAGAAAAAAAAA
1 AAGAAAAAAAAA
76439214 A
1 A
76439215 GCTCTCATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAGAAAAAAAAA
Found at i:76440692 original size:40 final size:40
Alignment explanation
Indices: 76440595--76440812 Score: 221
Period size: 40 Copynumber: 5.5 Consensus size: 40
76440585 TGGATGATAA
* *
76440595 CCGGGCTAAGTCCCGAAGGCATTT-TGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGT-C-CGAGTTACTA-TAT
* * *
76440636 CCGGGCTAAGTGCCGAAGGCATTTGTCCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
* * *
76440676 CCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
* * *
76440716 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
* **
76440756 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTA-CTATAT
* *
76440795 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
76440813 TACTTGGCTT
Statistics
Matches: 152, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
38 15 0.10
39 14 0.09
40 98 0.64
41 24 0.16
42 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
Found at i:76447684 original size:43 final size:43
Alignment explanation
Indices: 76447633--76447790 Score: 199
Period size: 43 Copynumber: 3.7 Consensus size: 43
76447623 CATAGAATTT
* *
76447633 TCGATATGTGATTACGTGTAAGACCACGTTTGGGGCATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * ** *
76447676 TCGATATGTGATTATGTGTAAGGCCATATCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
** * *
76447719 TTTATATATGATTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* *
76447762 TTGATATGTGATTACGAGTAAGACCACGT
1 TCGATATGTGATTACGTGTAAGACCACGT
76447791 TTAATGCGTT
Statistics
Matches: 97, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:76447801 original size:86 final size:86
Alignment explanation
Indices: 76447633--76447817 Score: 210
Period size: 86 Copynumber: 2.2 Consensus size: 86
76447623 CATAGAATTT
* * * * *
76447633 TCGATATGTGATTACGTGTAAGACCACGTTTGGGGCATTGGCATCGATATGTGATTATGTGTAAG
1 TCGATATATGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACGAGTAAG
* * * *
76447698 GCCATATCTGGGACGTTGGCA
66 ACCACATCTAGGACGTTGCCA
** * *
76447719 TTTATATATGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGATATGTGATTACGAGTAAG
1 TCGATATATGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACGAGTAAG
* * *
76447784 ACCACGTTTAATG-CGTTGCCA
66 ACCACATCT-AGGACGTTGCCA
76447805 TCGATATATGATT
1 TCGATATATGATT
76447818 CTAATATGTG
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
86 79 0.99
87 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (86 bp):
TCGATATATGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACGAGTAAG
ACCACATCTAGGACGTTGCCA
Found at i:76447873 original size:56 final size:56
Alignment explanation
Indices: 76447776--76447954 Score: 241
Period size: 56 Copynumber: 3.2 Consensus size: 56
76447766 TATGTGATTA
** * *
76447776 CGAGTAAGACCACGTTTAATGCGTTGCCATCGATATATGATTCTAATATGTGTGTG
1 CGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTAATATGTGTGTG
* * * * *
76447832 CGAGTAAGACCACATTTAGTATGTTGGCATCAATATGTGATTTTGATATGTGTGTG
1 CGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTAATATGTGTGTG
* * * *
76447888 CGAGTAAGACCATGTTTAATATGTTGGCATCGATAGGTGATTCCAATATGTGTTTG
1 CGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTAATATGTGTGTG
76447944 CGAGTAAGACC
1 CGAGTAAGACC
76447955 CTGTCTGGGA
Statistics
Matches: 105, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 105 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
CGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCTAATATGTGTGTG
Found at i:76451465 original size:64 final size:64
Alignment explanation
Indices: 76451385--76451567 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 64
76451375 AGACATTATG
* * * *
76451385 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGAGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
76451449 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAAAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGAGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
76451514 AA
63 AA
* * *
76451516 AT-TGGCTAGGTCACATGAGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGAGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
76451568 TCGAACTATA
Statistics
Matches: 96, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 25 0.26
66 21 0.22
67 32 0.33
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGAGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:76457990 original size:40 final size:40
Alignment explanation
Indices: 76457945--76458111 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
76457935 CGGAATATAA
76457945 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
76457985 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
76458025 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
76458065 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
76458104 CCGGATAT
1 CCGGATAT
76458112 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76458095 original size:80 final size:79
Alignment explanation
Indices: 76457961--76458111 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
76457951 ATAATCACGT
*
76457961 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
76458026 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
76458041 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
76458104 CCGGATAT
64 CCGGATAT
76458112 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:76466113 original size:40 final size:40
Alignment explanation
Indices: 76465985--76466138 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
76465975 ATCACGATTT
* *
76465985 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAAC-CA
* *** *
76466025 GCACGAA-TGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATAACCA
* **
76466065 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACCA
* * *
76466105 GCATAATTGTCTTCGGGGCTTACGGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTA--GCCCGGATAT
76466139 CATTCAATTT
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 79 0.86
41 2 0.02
42 9 0.10
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACCA
Found at i:76466932 original size:88 final size:88
Alignment explanation
Indices: 76466752--76466917 Score: 278
Period size: 88 Copynumber: 1.9 Consensus size: 88
76466742 TATAATATAG
* * *
76466752 CATCAAGCACTTATATGTGTGCTAGGCCGAATTGTGCTTGCAATTTCACAAGCATTCTTCCACAT
1 CATCAAGCACTCATATGTGTGCTAGGCCGAATTGTGCTTACAATTTCACAAGCATTCTTCAACAT
*
76466817 TTTCTTCTTTAAATCAATATATT
66 CTTCTTCTTTAAATCAATATATT
**
76466840 CATCAAGCACTCATATGTGTGCTAGGCCGAATTGTGCTTACAATTTCACAATTATTCTTCAACAT
1 CATCAAGCACTCATATGTGTGCTAGGCCGAATTGTGCTTACAATTTCACAAGCATTCTTCAACAT
76466905 CTTCTTCTTTAAA
66 CTTCTTCTTTAAA
76466918 CAAACTTATT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 72 1.00
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.38
Consensus pattern (88 bp):
CATCAAGCACTCATATGTGTGCTAGGCCGAATTGTGCTTACAATTTCACAAGCATTCTTCAACAT
CTTCTTCTTTAAATCAATATATT
Found at i:76472497 original size:40 final size:40
Alignment explanation
Indices: 76472429--76472603 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 40
76472419 AACCAAGTAT
*
76472429 CTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACAAATGC
**
76472468 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACAAATGC
* * * *
76472508 CTTCGGGTCTTAGCCCGGATATAATC-GCTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAA-CAACTCGCACAAATGC
* * *
76472548 CTTCGGG-CATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACAAATGC
*
76472587 CTTC-GGACTTAGTCCGG
1 CTTCGGGACTTAGCCCGG
76472604 TTATCATCCG
Statistics
Matches: 115, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
38 3 0.03
39 48 0.42
40 64 0.56
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:76472566 original size:79 final size:79
Alignment explanation
Indices: 76472429--76472592 Score: 226
Period size: 79 Copynumber: 2.1 Consensus size: 79
76472419 AACCAAGTAT
* * *
76472429 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 CTTCGGGATTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCA
76472494 ACTCGCACAAATGC
66 ACTCGCACAAATGC
* *
76472508 CTTCGGG-TCTTAGCCCGGATATAATC-GCTAGCATAAATGCCTTCGGG-CATAGCCCGGATATA
1 CTTCGGGAT-TTAG-CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATA
*
76472570 GCAACTCGCACGAATGC
63 GCAACTCGCACAAATGC
76472587 CTTCGG
1 CTTCGG
76472593 ACTTAGTCCG
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 46 0.61
80 28 0.37
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (79 bp):
CTTCGGGATTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:76480730 original size:40 final size:40
Alignment explanation
Indices: 76480684--76480847 Score: 231
Period size: 40 Copynumber: 4.1 Consensus size: 40
76480674 CGGGATTTAA
76480684 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
*
76480724 CCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
76480764 CCGGATATAATC-GCTAGCATAAATGCCTTCGGGTCATAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
76480804 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGT
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
76480844 CCGG
1 CCGG
76480848 TTATCATCCG
Statistics
Matches: 108, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 106 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:76482825 original size:32 final size:32
Alignment explanation
Indices: 76482779--76482841 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
76482769 GGGCTGTCAC
* *
76482779 AGTGCAGGCCACTACGTGCACCGGATTGATAA
1 AGTGCAAGCCACTACGTGCACCAGATTGATAA
* *
76482811 AGTGCAAGCTACTACGTGTACCAGATTGATA
1 AGTGCAAGCCACTACGTGCACCAGATTGATA
76482842 GGTCGCATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.22
Consensus pattern (32 bp):
AGTGCAAGCCACTACGTGCACCAGATTGATAA
Found at i:76483011 original size:50 final size:50
Alignment explanation
Indices: 76482818--76483025 Score: 204
Period size: 50 Copynumber: 4.1 Consensus size: 50
76482808 TAAAGTGCAA
*
76482818 GCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGA-AG
1 GCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGT-ACAG
* * * * * * **
76482868 GCTACTATGCGTACCCG-TTAACTTCGATCACATGTGTAGTACTAAGTGTAG
1 GCTACTACGTGTACCAGATTGA--TAGGTCACATGTGTAGTACTAAGTACAG
** * * * *
76482919 GCTACTACGTGTATGAGATGGATAAGTCACGTGTGTATTACTAAGTACAG
1 GCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTACAG
* * *
76482969 GCTACTACGTGTACCAGATTGATAGGTCGCATGTGCAGTACTAAGTGCAG
1 GCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTACAG
*
76483019 GTTACTA
1 GCTACTA
76483026 TTGATACGTG
Statistics
Matches: 122, Mismatches: 32, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
49 3 0.02
50 82 0.67
51 35 0.29
52 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
GCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTACAG
Found at i:76490002 original size:27 final size:27
Alignment explanation
Indices: 76489972--76490554 Score: 380
Period size: 27 Copynumber: 21.6 Consensus size: 27
76489962 CAAATTGTAA
* *
76489972 AATTACCAAAGTACCCTCGATTTACAG
1 AATTACCAAATTACCCTCGATTTATAG
**
76489999 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCAAATTACCCTCGATTTATAG
**
76490026 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCAAATTACCCTCGATTTATAG
*** *
76490053 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAATTACCCTCGATTTATAG
*** *
76490080 AATTACCGTTTTACCCTCAATTTATAG
1 AATTACCAAATTACCCTCGATTTATAG
**
76490107 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCAAATTACCCTCGATTTATAG
**
76490134 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCAAATTACCCTCGATTTATAG
**** * *
76490161 AATTACTGTTTTATCCTAGATTTATAG
1 AATTACCAAATTACCCTCGATTTATAG
* ***
76490188 AATTATCGTTTTACCCTCGATTTATAG
1 AATTACCAAATTACCCTCGATTTATAG
** * *
76490215 AATTACCATTTTACCCTCGACTTACAG
1 AATTACCAAATTACCCTCGATTTATAG
* **
76490242 AATTACTATTTTACCCTCGATTTATAG
1 AATTACCAAATTACCCTCGATTTATAG
*** * *
76490269 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCAAATTACCCTCGATTTATAG
* * * * *
76490296 AATTACTAAAATACCCTTGATTTACAA
1 AATTACCAAATTACCCTCGATTTATAG
* * *
76490323 AATTACCAAAATACCCTCGA-TCAGTAA
1 AATTACCAAATTACCCTCGATTTA-TAG
* * * *
76490350 AATTACCAAAATACCC-CTGGTTTGTAA
1 AATTACCAAATTACCCTC-GATTTATAG
* * * * * *
76490377 AACTACTAAAATACCCTTGGTTTATAA
1 AATTACCAAATTACCCTCGATTTATAG
* * * * *
76490404 AATTACCAAAATACCCTTGGTTTAAAA
1 AATTACCAAATTACCCTCGATTTATAG
* * * *
76490431 AATTACCAAAATACCC-CTGGTTTGTAA
1 AATTACCAAATTACCCTC-GATTTATAG
* * * * * *
76490458 AATTTCCAAAATACCCTTGGTTTAAAA
1 AATTACCAAATTACCCTCGATTTATAG
* * * *
76490485 AATTACCAAAATACCCTTGGTTTGTAG
1 AATTACCAAATTACCCTCGATTTATAG
* * * *
76490512 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAATTACCCTCGATTTATAG
*
76490539 AATTACCAAAATACCC
1 AATTACCAAATTACCC
76490555 CTGATTTGTG
Statistics
Matches: 486, Mismatches: 64, Indels: 12
0.86 0.11 0.02
Matches are distributed among these distances:
26 3 0.01
27 482 0.99
28 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (27 bp):
AATTACCAAATTACCCTCGATTTATAG
Found at i:76490080 original size:81 final size:81
Alignment explanation
Indices: 76489983--76490330 Score: 507
Period size: 81 Copynumber: 4.3 Consensus size: 81
76489973 ATTACCAAAG
76489983 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
*
76490048 TATAGAATTACCGTTT
66 TATAGAATTACCATTT
* *
76490064 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
76490129 TATAGAATTACCATTT
66 TATAGAATTACCATTT
* ** * * * *
76490145 TACCCTCGATTTATAGAATTACTGTTTTATCCTAGATTTATAGAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
76490210 TATAGAATTACCATTT
66 TATAGAATTACCATTT
* * *
76490226 TACCCTCGACTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
* * * ***
76490291 TACAAAATTACTAAAA
66 TATAGAATTACCATTT
* *
76490307 TACCCTTGATTTACAAAATTACCA
1 TACCCTCGATTTACAGAATTACCA
76490331 AAATACCCTC
Statistics
Matches: 241, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 241 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
TATAGAATTACCATTT
Found at i:76490319 original size:54 final size:54
Alignment explanation
Indices: 76489983--76490301 Score: 485
Period size: 54 Copynumber: 5.9 Consensus size: 54
76489973 ATTACCAAAG
* *
76489983 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* *
76490037 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* *
76490091 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
** * * * * *
76490145 TACCCTCGATTTATAGAATTACTGTTTTATCCTAGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* *
76490199 TACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* *
76490253 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTAC
76490302 TAAAATACCC
Statistics
Matches: 238, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 238 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
Found at i:76490338 original size:81 final size:81
Alignment explanation
Indices: 76489969--76490554 Score: 458
Period size: 81 Copynumber: 7.2 Consensus size: 81
76489959 CCTCAAATTG
*
76489969 TAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
1 TAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
76490034 TTTTACCCTCGATTTA
66 TTTTACCCTCGATTTA
* **** * *
76490050 TAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTACCA
1 TAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
76490115 TTTTACCCTCGATTTA
66 TTTTACCCTCGATTTA
* *** * ** * * * *
76490131 TAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTATCCTAGATTTATAGAATTATCG
1 TAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
76490196 TTTTACCCTCGATTTA
66 TTTTACCCTCGATTTA
* *** * * *
76490212 TAGAATTACCATTTTACCCTCGACTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCG
1 TAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
76490277 TTTTACCCTCGATTTA
66 TTTTACCCTCGATTTA
* * * * *** * *
76490293 CAAAATTACTAAAATACCCTTGATTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACC
1 TAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA-TAGAATTACC
*** * *
76490357 AAAATACCC-CTGGTTTG
65 ATTTTACCCTC-GATTTA
* * * * * * *** * * * *
76490374 TAAAACTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGGTTTAAAAAATTACCA
1 TAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
*** * *
76490439 AAATACCC-CTGGTTTG
66 TTTTACCCTC-GATTTA
* * * * * *** * * *
76490455 TAAAATTTCCAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGTAGAATTACCA
1 TAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
*** *
76490520 AAATACCCTTGATTTA
66 TTTTACCCTCGATTTA
*
76490536 CAAAATTACCAAAATACCC
1 TAAAATTACCAAAATACCC
76490555 CTGATTTGTG
Statistics
Matches: 439, Mismatches: 62, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
80 3 0.01
81 434 0.99
82 2 0.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
TTTTACCCTCGATTTA
Found at i:76490547 original size:54 final size:54
Alignment explanation
Indices: 76490294--76490584 Score: 375
Period size: 54 Copynumber: 5.4 Consensus size: 54
76490284 CTCGATTTAC
* * * * * **
76490294 AAAATTACTAAAATACCCTTGATTTACAAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGT
* ** * * *
76490348 AAAATTACCAAAATACCCCTGGTTTGTAAAACTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGT
*
76490402 AAAATTACCAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGT
*
76490456 AAAATTTCCAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGT
* * * * *
76490510 AGAATTACCAAAATACCCTTGATTTACAAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGT
* **
76490564 GAAATTACTGAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
76490585 TAGGGTAGAA
Statistics
Matches: 206, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 206 1.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGT
Found at i:76490593 original size:81 final size:80
Alignment explanation
Indices: 76490282--76490611 Score: 331
Period size: 81 Copynumber: 4.1 Consensus size: 80
76490272 TACCGTTTTA
* * * **
76490282 CCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAAAATTACCAAAATACCCTCGATCAG
1 CCCT-GATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCTTG-TGTG
76490347 TAAAATTACCAAAATAC
64 TAAAATTACCAAAATAC
* ** * * * *
76490364 CCCTGGTTTGTAAAACTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTG-GTTTA
1 CCCTGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCTTGTGTGT-
76490428 AAAAATTACCAAAATAC
65 -AAAATTACCAAAATAC
* ** * * * *
76490445 CCCTGGTTTGTAAAATTTCCAAAATACCCTTGGTTTAAAAAATTACCAAAATACCCTTGGTTTGT
1 CCCTGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCTT-GTGTGT
*
76490510 AGAATTACCAAAATAC
65 AAAATTACCAAAATAC
* * * * ** *
76490526 CCTTGATTTACAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTTGTAGGGT
1 CCCTGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCTTGT-GTGT
*
76490591 AGAAA-TACCGAAATAC
65 A-AAATTACCAAAATAC
76490607 CCCTG
1 CCCTG
76490612 TAGGGTAGAA
Statistics
Matches: 208, Mismatches: 34, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.00
80 2 0.01
81 196 0.94
82 7 0.03
83 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (80 bp):
CCCTGATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCTTGTGTGTA
AAATTACCAAAATAC
Found at i:76490603 original size:27 final size:28
Alignment explanation
Indices: 76490538--76490621 Score: 93
Period size: 27 Copynumber: 3.1 Consensus size: 28
76490528 TTGATTTACA
* **
76490538 AAATTACCAAAATACCCCTG-ATTTGT-G
1 AAATTACCGAAATACCCCTGTA-GGGTAG
* *
76490565 AAATTACTGAAATACCCTTGTAGGGTAG
1 AAATTACCGAAATACCCCTGTAGGGTAG
76490593 AAA-TACCGAAATACCCCTGTAGGGTAG
1 AAATTACCGAAATACCCCTGTAGGGTAG
76490620 AA
1 AA
76490622 TTATCATTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
27 43 0.90
28 5 0.10
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (28 bp):
AAATTACCGAAATACCCCTGTAGGGTAG
Found at i:76490865 original size:25 final size:25
Alignment explanation
Indices: 76490831--76490900 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
76490821 AGGAAGTGCT
* *
76490831 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
76490856 AAAAGGGCTTTGCCTCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
76490881 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
76490901 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:76494445 original size:40 final size:39
Alignment explanation
Indices: 76494280--76494463 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
76494270 AAATTGAATG
* * *
76494280 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
76494320 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
76494360 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
76494400 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
76494439 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
76494464 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:76494488 original size:80 final size:81
Alignment explanation
Indices: 76494320--76494508 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
76494310 GCTGGAAATT
* * * *
76494320 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
76494385 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
76494401 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
76494464 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
76494480 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
76494509 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:76510793 original size:40 final size:40
Alignment explanation
Indices: 76510697--76510875 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
76510687 CGAATGGTAT
* * * *
76510697 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
76510738 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
76510778 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
76510818 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
76510858 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
76510876 ACAATCGAGC
Statistics
Matches: 119, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
40 94 0.79
41 25 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:76510838 original size:80 final size:81
Alignment explanation
Indices: 76510697--76510875 Score: 254
Period size: 80 Copynumber: 2.2 Consensus size: 81
76510687 CGAATGGTAT
* *
76510697 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
*
76510762 GTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAA
* * *
76510778 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
76510841 TGTGCGAATTACTATAA
65 TGTGCGAATTACCAAAA
*
76510858 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
76510876 ACAATCGAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
79 1 0.01
80 60 0.69
81 26 0.30
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAA
Found at i:76512851 original size:12 final size:12
Alignment explanation
Indices: 76512834--76512859 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76512824 AGTGATTTAA
76512834 TTTGCTAGAAGC
1 TTTGCTAGAAGC
76512846 TTTGCTAGAAGC
1 TTTGCTAGAAGC
76512858 TT
1 TT
76512860 ACCAGAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (12 bp):
TTTGCTAGAAGC
Found at i:76521365 original size:46 final size:46
Alignment explanation
Indices: 76521310--76521490 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
76521300 TAGGATGGTT
*
76521310 GAGCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
76521356 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
76521402 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
76521449 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76521491 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 70 0.61
47 33 0.29
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:76521471 original size:93 final size:93
Alignment explanation
Indices: 76521312--76521482 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
76521302 GGATGGTTGA
* *
76521312 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76521377 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
76521405 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76521470 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
76521483 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76524312 original size:15 final size:15
Alignment explanation
Indices: 76524275--76524303 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
76524265 TTTTCCTATC
76524275 TAATAATAATAATTA
1 TAATAATAATAATTA
76524290 TAATAATAATAATT
1 TAATAATAATAATT
76524304 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:76529427 original size:40 final size:40
Alignment explanation
Indices: 76529319--76529528 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76529309 CGGGATTTAA
* * * * *
76529319 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
76529359 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76529399 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76529439 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76529479 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76529519 CCGGATATAT
1 CCGGATATAT
76529529 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:76537491 original size:40 final size:40
Alignment explanation
Indices: 76537383--76537592 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
76537373 CGGGATTTAA
* * * * *
76537383 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
76537423 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76537463 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76537503 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76537543 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
76537583 CCGGATATAT
1 CCGGATATAT
76537593 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:76545625 original size:96 final size:96
Alignment explanation
Indices: 76545505--76545860 Score: 601
Period size: 96 Copynumber: 3.7 Consensus size: 96
76545495 TATCACAGTT
* * * * * *
76545505 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATATATATATACTTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATT
76545569 CATCACATTGGCCATTCGGCCTTATCACATAC
65 CATCACATTGGCCATTCGGCCTTATCACATAC
*
76545601 ATACACTTTCACGTTCATCACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
76545664 ATCACATTGGCCATTCGGCCTTATCACATATAC
66 ATCACATTGGCCATTCGGCCTTATCAC--ATAC
76545697 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
76545762 ATCACATTGGCCATTCGGCCTTATCACATAC
66 ATCACATTGGCCATTCGGCCTTATCACATAC
76545793 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
76545858 ATC
66 ATC
76545861 GTAACAAAAT
Statistics
Matches: 248, Mismatches: 7, Indels: 10
0.94 0.03 0.04
Matches are distributed among these distances:
94 45 0.18
96 154 0.62
97 2 0.01
98 47 0.19
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (96 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:76545626 original size:47 final size:47
Alignment explanation
Indices: 76545505--76545860 Score: 561
Period size: 49 Copynumber: 7.4 Consensus size: 47
76545495 TATCACAGTT
* * * * *
76545505 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATC--ACATAC
*
76545554 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
76545601 ATACACTTTCACGTTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
76545648 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
76545697 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
76545746 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
76545793 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
76545842 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
76545861 GTAACAAAAT
Statistics
Matches: 293, Mismatches: 9, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
47 138 0.47
49 153 0.52
50 2 0.01
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:76545716 original size:27 final size:27
Alignment explanation
Indices: 76545686--76545768 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
76545676 ATTCGGCCTT
76545686 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
* * *
76545713 ATCACAT-TGGC---CA--TTCGGCCTT-
1 ATCACATAT-ACATACACTTTC-ACATTC
76545735 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
76545762 ATCACAT
1 ATCACAT
76545769 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 11 0.27
23 4 0.10
24 2 0.05
25 2 0.05
26 4 0.10
27 18 0.44
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.33
Consensus pattern (27 bp):
ATCACATATACATACACTTTCACATTC
Found at i:76552444 original size:124 final size:124
Alignment explanation
Indices: 76552222--76552446 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
76552212 GAATTATGTG
* * * * * * *
76552222 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
76552287 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
76552346 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
76552411 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
76552447 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:76552568 original size:40 final size:40
Alignment explanation
Indices: 76552441--76552570 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
76552431 TTGCTGGAAA
* * *
76552441 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
76552481 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
76552521 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
76552561 TTATATCCGG
1 TTATATCCGG
76552571 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:76560020 original size:124 final size:124
Alignment explanation
Indices: 76559798--76560022 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
76559788 GAATTATGTG
* * * * * * *
76559798 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
76559863 GCTAAGTCCTGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
76559922 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
76559987 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
76560023 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 3 0.03
124 84 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.36
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:76560144 original size:40 final size:40
Alignment explanation
Indices: 76560017--76560146 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
76560007 TTGCTGGAAA
* * *
76560017 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
76560057 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
76560097 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
76560137 TTATATCCGG
1 TTATATCCGG
76560147 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:76562131 original size:28 final size:28
Alignment explanation
Indices: 76562030--76562131 Score: 73
Period size: 28 Copynumber: 3.5 Consensus size: 28
76562020 TCAGAGTTAG
* * * *
76562030 CTGGGCCTTAGTCCATATCAATAACAAT
1 CTGGGCCATAGCCCATATCAGTATCAAT
*
76562058 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCCATAGCCCATAT-CAGTATC--A--AT
* *
76562090 ACTGAG-CTTAGCCCATATCAGTATCAAT
1 -CTGGGCCATAGCCCATATCAGTATCAAT
76562118 CTGGGCCATAGCCC
1 CTGGGCCATAGCCC
76562132 TATTACAAGT
Statistics
Matches: 56, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
27 5 0.09
28 27 0.48
30 2 0.04
32 17 0.30
33 5 0.09
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (28 bp):
CTGGGCCATAGCCCATATCAGTATCAAT
Found at i:76562166 original size:60 final size:60
Alignment explanation
Indices: 76562019--76562138 Score: 154
Period size: 60 Copynumber: 2.0 Consensus size: 60
76562009 CTATTCAGAA
* *
76562019 ATCAGAGT-TAGCTGGGCCTTAGTCCATATCAATAACAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGTATA-CTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCCATTACAG
* * *
76562079 TATCAGAGTATACTGAG-CTTAGCCCATATCAGTATCAATCTGGGCCATAGCCCTATTACA
1 -ATCAGAGTATACTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCC-ATTACA
76562139 AGTCGAGATA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
60 33 0.63
61 17 0.33
62 2 0.04
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (60 bp):
ATCAGAGTATACTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCCATTACAG
Found at i:76562185 original size:20 final size:20
Alignment explanation
Indices: 76562160--76562214 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
76562150 GTTGGGCCTT
76562160 GCCCATAAT-AACACAGTTGG
1 GCCCATAATCAACACAGTT-G
* *
76562180 GCCCAT-TTCAATACAGTTG
1 GCCCATAATCAACACAGTTG
76562199 GCCCATAA-CAA-ACAGT
1 GCCCATAATCAACACAGT
76562215 CTCTTATGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 5 0.17
19 11 0.37
20 14 0.47
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (20 bp):
GCCCATAATCAACACAGTTG
Found at i:76566226 original size:20 final size:20
Alignment explanation
Indices: 76566201--76566246 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
76566191 GTTGGGCCTT
76566201 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
76566221 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
76566240 GCCCATA
1 GCCCATA
76566247 ACAAAACAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:76567222 original size:25 final size:23
Alignment explanation
Indices: 76567167--76567222 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
76567157 TTTCGGCTAG
*
76567167 AGAAGAAAAGAAAGGAGAATAGA
1 AGAAGAAAAGAAAGGAGAAGAGA
* *
76567190 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGAAAGGAGAAGAGA
76567215 AGGAAGAA
1 A-GAAGAA
76567223 TTCGGCACTC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 2 0.08
24 4 0.15
25 19 0.73
26 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.34, T:0.04
Consensus pattern (23 bp):
AGAAGAAAAGAAAGGAGAAGAGA
Found at i:76568534 original size:29 final size:29
Alignment explanation
Indices: 76568501--76568577 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
76568491 TGAATATGAC
* *
76568501 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* *
76568530 TGGGCTTAATGGGCCATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
76568559 TGGGCCTAATGGGCCATAT
1 TGGGCCTAATGGGCCATAT
76568578 GAATATGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:76572645 original size:40 final size:40
Alignment explanation
Indices: 76572543--76572726 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 40
76572533 AAATTGAATG
* * * * * *
76572543 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
76572583 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
76572623 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * *
76572663 A-ATTCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTG
1 ATA-TCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
76572703 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
76572727 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 4 0.03
40 113 0.94
41 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:76574110 original size:93 final size:93
Alignment explanation
Indices: 76574006--76574176 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
76573996 CCCATAAGCA
*
76574006 AACTCGGACTCAACTCAACGA-TCTCGGGCGTTCGAATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGT-TCGGACGTTCGAATCCATAAGTGAACTCGGACTCAACTCAA
76574070 CAAGCTCGGATGCCTAGTTACATCTCACG
65 CAAGCTCGGATGCCTAGTTACATCTCACG
* * *
76574099 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCGTAAGTGATCTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGAATCCATAAGTGAACTCGGACTCAACTCAAC
* *
76574164 GAGTTCGGATGCC
66 AAGCTCGGATGCC
76574177 CAAATATCCG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACGTTCGAATCCATAAGTGAACTCGGACTCAACTCAAC
AAGCTCGGATGCCTAGTTACATCTCACG
Found at i:76574166 original size:46 final size:45
Alignment explanation
Indices: 76574006--76574172 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 45
76573996 CCCATAAGCA
* *
76574006 AACTCGGACTCAACTCAACGA-TCTCGGGCGTTCGAATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGT-TCGGACGTTCGCATCC-TAAGTG
* * * * *
76574052 AACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT-CTCA-CG
1 AACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCCTAAGTG
76574099 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCGTAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCC-TAAGTG
*
76574145 ATCTCGGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGTTCGGA
76574173 TGCCCAAATA
Statistics
Matches: 98, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 52 0.53
47 27 0.28
48 2 0.02
49 2 0.02
50 2 0.02
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCTAAGTG
Found at i:76576954 original size:15 final size:15
Alignment explanation
Indices: 76576906--76576974 Score: 70
Period size: 15 Copynumber: 4.7 Consensus size: 15
76576896 TAAAGATAAC
*
76576906 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
76576920 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
76576935 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
76576950 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
*
76576965 AAAAAACCCA
1 AAGAAACCCA
76576975 AGATACGATA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
14 9 0.20
15 35 0.78
16 1 0.02
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:76576972 original size:30 final size:30
Alignment explanation
Indices: 76576898--76576974 Score: 86
Period size: 30 Copynumber: 2.5 Consensus size: 30
76576888 TTACGAAATA
*
76576898 AAGATAACAAGAAAACC-GAATAAAGAAATCC
1 AAGATAA-AA-AAACCCAGAATAAAGAAATCC
* *
76576929 AAGATAGAGAAACCCAGAATAAAGAAATCC
1 AAGATAAAAAAACCCAGAATAAAGAAATCC
76576959 -AGAATAAAAAAACCCA
1 AAG-ATAAAAAAACCCA
76576975 AGATACGATA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 7 0.18
30 26 0.67
31 6 0.15
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (30 bp):
AAGATAAAAAAACCCAGAATAAAGAAATCC
Found at i:76579941 original size:46 final size:45
Alignment explanation
Indices: 76579883--76580140 Score: 236
Period size: 46 Copynumber: 5.6 Consensus size: 45
76579873 CCCATAAGAA
* *
76579883 AACTCGGACTCAACTCAACGAGCTCGGGTGTTTGCATCCATAATTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGTTTGCATCCATAA-TG
* * * * *
76579929 AACTCAGACTCAACTCAACGAGCTCTGATGCCTAGTTACAT-C-TCATG
1 AACTCGGACTCAACTCAACGAGTTCGGATG--T--TTGCATCCATAATG
* * *
76579976 AACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGTTTGCATCCATAA-TG
* * * *
76580022 AACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCACG
1 AACTCGGACTCAACTCAACGAGTTCGGATG--T--TTGCATCCATAATG
* * *
76580069 AACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGATGTTTGCATCCATAA-TG
76580115 AACTCGGACTCAACTCAACGAGTTCG
1 AACTCGGACTCAACTCAACGAGTTCG
76580141 AATGCCCAAA
Statistics
Matches: 172, Mismatches: 26, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
43 8 0.05
44 2 0.01
45 6 0.03
46 84 0.49
47 55 0.32
48 6 0.03
49 2 0.01
50 9 0.05
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (45 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGTTTGCATCCATAATG
Found at i:76579993 original size:93 final size:92
Alignment explanation
Indices: 76579883--76580146 Score: 393
Period size: 93 Copynumber: 2.8 Consensus size: 92
76579873 CCCATAAGAA
* ** * *
76579883 AACTCGGACTCAACTCAACGAGCTCGGGTGTTTGCATCCATAATTGAACTCAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTC-GACTCAACTCAAC
* *
76579948 GAGCTCTGATGCCTAGTTACATCTCATG
65 GAGCTCGGATGCCTAGTTACATCTCACG
*
76579976 AACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCG-ACTCAACTCAAC
*
76580041 GAGTTCGGATGCCTAGTTACATCTCACG
65 GAGCTCGGATGCCTAGTTACATCTCACG
*
76580069 AACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTC-GACTCAACTCAAC
* *
76580134 GAGTTCGAATGCC
65 GAGCTCGGATGCC
76580147 CAAATATCCG
Statistics
Matches: 157, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
92 1 0.01
93 155 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (92 bp):
AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCACG
Found at i:76579994 original size:47 final size:46
Alignment explanation
Indices: 76579927--76580092 Score: 180
Period size: 47 Copynumber: 3.6 Consensus size: 46
76579917 CATCCATAAT
*
76579927 TGAACTC-AGACTCAACTCAACGAGCTCTGATGCCTAGTTACATCTCA
1 TGAACTCGA-ACTCAACTCAACGAGTTC-GATGCCTAGTTACATCTCA
* * *
76579974 TGAACTCGAACTCAACTCAACGAGTTCG--GAC--GTTCGCATCCATAA
1 TGAACTCGAACTCAACTCAACGAGTTCGATGCCTAGTT-ACAT-C-TCA
76580019 GTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 -TGAACTCGAACTCAACTCAACGAGTTC-GATGCCTAGTTACATCTCA
* *
76580067 CGAACTCGGACTCAACTCAACGAGTT
1 TGAACTCGAACTCAACTCAACGAGTT
76580093 TGGACGTTCG
Statistics
Matches: 100, Mismatches: 9, Indels: 20
0.78 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 2 0.02
46 28 0.28
47 49 0.49
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (46 bp):
TGAACTCGAACTCAACTCAACGAGTTCGATGCCTAGTTACATCTCA
Found at i:76581836 original size:9 final size:9
Alignment explanation
Indices: 76581822--76581848 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
76581812 GATCTTTAAG
76581822 GGCGTGGCT
1 GGCGTGGCT
76581831 GGCGTGGCT
1 GGCGTGGCT
76581840 GGCGTGGCT
1 GGCGTGGCT
76581849 CCTAATGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.00, C:0.22, G:0.56, T:0.22
Consensus pattern (9 bp):
GGCGTGGCT
Found at i:76584160 original size:8 final size:8
Alignment explanation
Indices: 76584144--76584186 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
76584134 ATCGACAAAA
76584144 GCCGAAAT
1 GCCGAAAT
*
76584152 GCAGAAAT
1 GCCGAAAT
76584160 GCCGAAAT
1 GCCGAAAT
*
76584168 GCCGAAAA
1 GCCGAAAT
*
76584176 GCCAAAAT
1 GCCGAAAT
76584184 GCC
1 GCC
76584187 AAAAAGCTGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.42, C:0.26, G:0.23, T:0.09
Consensus pattern (8 bp):
GCCGAAAT
Found at i:76584186 original size:16 final size:16
Alignment explanation
Indices: 76584140--76584193 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
76584130 ATGAATCGAC
*
76584140 AAAAGCCGAAATGCAG
1 AAAAGCCGAAATGCCG
*
76584156 AAATGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
* *
76584172 AAAAGCCAAAATGCCA
1 AAAAGCCGAAATGCCG
76584188 AAAAGC
1 AAAAGC
76584194 TGAATGTTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.50, C:0.22, G:0.20, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:76584466 original size:29 final size:29
Alignment explanation
Indices: 76584434--76584498 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
76584424 GGCGTAACAT
* *
76584434 GCCATATAAATGTGATTTGGGCCTATTGG
1 GCCATATAAAGGTGATTTGGGCCTAATGG
*
76584463 GCCATATATAGGTGATTTGGGCCTAATGG
1 GCCATATAAAGGTGATTTGGGCCTAATGG
*
76584492 GTCATAT
1 GCCATAT
76584499 GAATATGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.34
Consensus pattern (29 bp):
GCCATATAAAGGTGATTTGGGCCTAATGG
Found at i:76586630 original size:38 final size:38
Alignment explanation
Indices: 76586567--76586742 Score: 219
Period size: 38 Copynumber: 4.5 Consensus size: 38
76586557 ATTTGATGTG
76586567 TATCCGGGCTTAAAGGT-CCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGG-TTAAA--TCCCGCAGGCTTCGTGCTGGTATTA
*
76586607 TATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
76586645 TATCCTGGTTAAATCCCGCAAGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * * *
76586683 TAACAGGGTTAAATCCCGCAGGATTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
76586721 TATTCGAGCTTAAAGTCCCGCA
1 TATCCG-GGTTAAA-TCCCGCA
76586743 AGTTTTATGC
Statistics
Matches: 119, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
37 1 0.01
38 92 0.77
39 11 0.09
40 15 0.13
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:76588209 original size:46 final size:46
Alignment explanation
Indices: 76588142--76588315 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
76588132 TGTAACCCGC
*
76588142 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
76588188 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
76588238 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
76588280 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
76588316 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 26 0.24
46 36 0.33
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:76588307 original size:92 final size:93
Alignment explanation
Indices: 76588149--76588319 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
76588139 CGCCCATAAG
* *
76588149 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76588214 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
76588242 CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76588306 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
76588320 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 49 0.65
93 26 0.35
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:76595739 original size:46 final size:46
Alignment explanation
Indices: 76595672--76595844 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
76595662 TGTAACCCGC
*
76595672 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
76595718 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
76595768 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCG--T
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
76595809 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
76595845 ATGCTCTACC
Statistics
Matches: 108, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 2 0.02
44 29 0.27
46 34 0.31
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:76595836 original size:91 final size:92
Alignment explanation
Indices: 76595679--76595848 Score: 297
Period size: 91 Copynumber: 1.8 Consensus size: 92
76595669 CGCCCATAAG
* *
76595679 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCG-ATCCATAAGTGAACTCGGACTCAACTCA
76595744 ACGAGTTCGGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
*
76595772 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCG-TCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGATCCATAAGTGAACTCGGACTCAACTCAA
76595836 CGAGTTCGGATGC
66 CGAGTTCGGATGC
76595849 TCTACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 41 0.55
93 33 0.45
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:76604911 original size:29 final size:28
Alignment explanation
Indices: 76604841--76604924 Score: 98
Period size: 29 Copynumber: 2.9 Consensus size: 28
76604831 AAGGGTTTTA
76604841 GACACGGGC-GTGTCATGGCCGTGTGAGG
1 GACACGGGCTGTGTCA-GGCCGTGTGAGG
* *
76604869 GACACGGGTGTGTGTCAGGCTGTGTGAGG
1 GACACGGG-CTGTGTCAGGCCGTGTGAGG
* *
76604898 GACACGGGCATGTGCCAGGCCATGTGA
1 GACACGGGC-TGTGTCAGGCCGTGTGA
76604925 AAACCCATGT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
28 8 0.17
29 33 0.70
30 6 0.13
ACGTcount: A:0.17, C:0.20, G:0.44, T:0.19
Consensus pattern (28 bp):
GACACGGGCTGTGTCAGGCCGTGTGAGG
Found at i:76608236 original size:2 final size:2
Alignment explanation
Indices: 76608229--76608253 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76608219 AAGTAACAAG
76608229 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
76608254 CTATTTTCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76609601 original size:42 final size:43
Alignment explanation
Indices: 76609522--76609607 Score: 138
Period size: 42 Copynumber: 2.0 Consensus size: 43
76609512 TCATTAGGAA
*
76609522 TTATGTGATCTAAACTCATTGAGTTGTGGTCTTAGTTCATGAT
1 TTATGTGATCTAAACTCATTGAGTTGTGGTCTGAGTTCATGAT
* *
76609565 TTATGTGATTTGAACTCA-TGAGTTGTGGTCTGAGTTCATGAT
1 TTATGTGATCTAAACTCATTGAGTTGTGGTCTGAGTTCATGAT
76609607 T
1 T
76609608 ATGAAACACA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 24 0.60
43 16 0.40
ACGTcount: A:0.22, C:0.10, G:0.23, T:0.44
Consensus pattern (43 bp):
TTATGTGATCTAAACTCATTGAGTTGTGGTCTGAGTTCATGAT
Found at i:76609603 original size:20 final size:20
Alignment explanation
Indices: 76609541--76609605 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
76609531 CTAAACTCAT
*
76609541 TGAGTTGTGGTCTTAGTTCA
1 TGAGTTGTGGTCTGAGTTCA
* * * **
76609561 TGATTTATGTGATTTGAACTCA
1 TGA-GT-TGTGGTCTGAGTTCA
76609583 TGAGTTGTGGTCTGAGTTCA
1 TGAGTTGTGGTCTGAGTTCA
76609603 TGA
1 TGA
76609606 TTATGAAACA
Statistics
Matches: 32, Mismatches: 11, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
20 17 0.53
21 2 0.06
22 13 0.41
ACGTcount: A:0.20, C:0.09, G:0.28, T:0.43
Consensus pattern (20 bp):
TGAGTTGTGGTCTGAGTTCA
Found at i:76622454 original size:42 final size:43
Alignment explanation
Indices: 76622375--76622460 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 43
76622365 TCATTAGGAA
* *
76622375 TTATGTGATCTGAACTTATTGAGTTGTGCTCTGAGTTCATGAT
1 TTATGTGATCTGAACTCATTGAGTTGTGCTCTAAGTTCATGAT
* * *
76622418 TTATGTGATTTGAACTCA-TGAGTTGTGGTTTAAGTTCATGAT
1 TTATGTGATCTGAACTCATTGAGTTGTGCTCTAAGTTCATGAT
76622460 T
1 T
76622461 ATGAAACACA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
42 22 0.58
43 16 0.42
ACGTcount: A:0.22, C:0.09, G:0.23, T:0.45
Consensus pattern (43 bp):
TTATGTGATCTGAACTCATTGAGTTGTGCTCTAAGTTCATGAT
Found at i:76625015 original size:47 final size:47
Alignment explanation
Indices: 76624962--76625538 Score: 902
Period size: 47 Copynumber: 12.3 Consensus size: 47
76624952 ACAAGATATG
76624962 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
76625009 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
76625056 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
76625103 CATATGTGATAAGGCCGAGTGGCCAATGTTATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
76625150 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* ** ** *
76625197 TATATGTGATAAGGTCGGGTGGCCAACATGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
76625244 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
76625291 TATATGTGAGAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
76625338 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGAA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
76625385 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
76625432 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
76625479 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
76625526 TAAATGTGATAAG
1 TATATGTGATAAG
76625539 TCCCGAAGGG
Statistics
Matches: 478, Mismatches: 52, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 478 1.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:76627448 original size:40 final size:40
Alignment explanation
Indices: 76627398--76627784 Score: 643
Period size: 40 Copynumber: 9.7 Consensus size: 40
76627388 ATGTTATATT
*
76627398 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
* *
76627438 CGGGCCAAGTCCCAAAGAGCATTCGTGCTGGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
76627478 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
* *
76627518 CGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
** *
76627558 CGGGCTAAGTTTCGAAGAGCATTCGTGCTGGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
76627598 CGGGCTAAGTCCC-AAGAGCATTCGTGCTGGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
*
76627637 CGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
* *
76627677 CGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
*
76627717 CGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
*
76627757 CGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCT
76627785 TGGACAAAAT
Statistics
Matches: 326, Mismatches: 20, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 48 0.15
40 278 0.85
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATC
Found at i:76627688 original size:159 final size:160
Alignment explanation
Indices: 76627392--76627784 Score: 673
Period size: 159 Copynumber: 2.5 Consensus size: 160
76627382 TTCAGTATGT
* *
76627392 TATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCGGGCCAAGTCCCAAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCGGGCTAAGTCCCAAAGAG
76627457 CATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGG
66 CATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGG
76627522 CTAAGTTCCAAAGAGCATTCGTGCTGGTGA
131 CTAAGTTCCAAAGAGCATTCGTGCTGGTGA
* **
76627552 TGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTGGTGATATATCCGGGCTAAGTCCC-AAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCGGGCTAAGTCCCAAAGAG
*
76627616 CATTCGTGCTGGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGATGTATCCGGG
66 CATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGG
*
76627681 CTAAGTTCCGAAGAGCATTCGTGCTGGTGA
131 CTAAGTTCCAAAGAGCATTCGTGCTGGTGA
* * * *
76627711 TATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTGATGTATCCGGGCTAAGCCCCGAAG-G
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCGGGCTAAGTCCCAAAGAG
76627775 CATTCGTGCT
66 CATTCGTGCT
76627785 TGGACAAAAT
Statistics
Matches: 219, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
159 162 0.74
160 57 0.26
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (160 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCGGGCTAAGTCCCAAAGAG
CATTCGTGCTGGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATGTATCCGGG
CTAAGTTCCAAAGAGCATTCGTGCTGGTGA
Found at i:76631439 original size:47 final size:47
Alignment explanation
Indices: 76631386--76631868 Score: 759
Period size: 47 Copynumber: 10.3 Consensus size: 47
76631376 ACAAGATATG
76631386 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
76631433 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
76631480 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
76631527 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* ** * *
76631574 TATATGTGATAAGGCTGGGTGGCCAACGTGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
76631621 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
76631668 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* **
76631715 TATATGTGATAAGGCCGAGTGGCCAACATGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
76631762 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
76631809 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
76631856 TACATGTGATAAG
1 TATATGTGATAAG
76631869 TCCCGAAGGG
Statistics
Matches: 396, Mismatches: 40, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 396 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:76631640 original size:141 final size:141
Alignment explanation
Indices: 76631386--76631868 Score: 840
Period size: 141 Copynumber: 3.4 Consensus size: 141
76631376 ACAAGATATG
76631386 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
76631451 GTGGCCAACGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGGCCAACGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
76631516 GTGAAAGTGTA
131 GTGAAAGTGTA
* * *
76631527 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGGAAGTGTATATATGTGATAAGGCTGG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
76631592 GTGGCCAACGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GTGGCCAACGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
76631657 GTGAAAGTGTA
131 GTGAAAGTGTA
76631668 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* * * *
76631733 GTGGCCAACATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
66 GTGGCCAACGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
76631798 GTGAAAGTGTA
131 GTGAAAGTGTA
* * * * * * *
76631809 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATACATGTGATAAG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
76631869 TCCCGAAGGG
Statistics
Matches: 325, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 325 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (141 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
GTGGCCAACGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGTA
Found at i:76637738 original size:13 final size:13
Alignment explanation
Indices: 76637720--76637744 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76637710 TTAGTATGTG
76637720 TGAAAATTTAATA
1 TGAAAATTTAATA
76637733 TGAAAATTTAAT
1 TGAAAATTTAAT
76637745 CGTTTGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
TGAAAATTTAATA
Found at i:76638537 original size:15 final size:18
Alignment explanation
Indices: 76638498--76638537 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 18
76638488 ATATGGGTTG
76638498 ATTTGAATGAATGTGTAA
1 ATTTGAATGAATGTGTAA
76638516 A-TTGAAT-AA-GT-TAA
1 ATTTGAATGAATGTGTAA
76638530 ATTTGAAT
1 ATTTGAAT
76638538 TTATATAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.19
15 8 0.38
16 2 0.10
17 6 0.29
18 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.40
Consensus pattern (18 bp):
ATTTGAATGAATGTGTAA
Found at i:76638985 original size:43 final size:43
Alignment explanation
Indices: 76638815--76638986 Score: 138
Period size: 43 Copynumber: 4.0 Consensus size: 43
76638805 GATGTAAGAT
* * * *
76638815 TCGATATGTAATTTCGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATATGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
* * * * *
76638858 TCGACT-TATGATTTATGTGTAAGACCATGTCTA-GACATCGACA
1 TCGA-TATATGA-TTACGTGTAAGACCACGTCTAGGACGTTGGCA
* * *
76638901 TCG-TATTTGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATATGATTACGTGTAAGACCAC-GTCTAGGAC-GTTGGCA
* * *
76638943 TCGATATCTGATTACATGTAAGACCACATCTAGGACGTTGGCA
1 TCGATATATGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
76638986 T
1 T
76638987 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
41 17 0.17
42 14 0.14
43 48 0.49
44 19 0.19
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TCGATATATGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
Found at i:76649468 original size:15 final size:16
Alignment explanation
Indices: 76649448--76649477 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76649438 ATAACAACTA
76649448 TATATAAT-TATATTT
1 TATATAATATATATTT
76649463 TATATAATATATATT
1 TATATAATATATATT
76649478 AATTGTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATAATATATATTT
Found at i:76651447 original size:52 final size:52
Alignment explanation
Indices: 76651369--76651475 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
76651359 GATCACATAA
*
76651369 TCATAATAACCCCTAGTGACATGTCATTTGTATCGTAATCTATTCCTAAGGT
1 TCATAATAACCCCTAGTGACATGTCATTTGTATCCTAATCTATTCCTAAGGT
*
76651421 TCATAATAACCCCTAGTGACATGTCATTTGTATCCTAATCTATTCCTAATGT
1 TCATAATAACCCCTAGTGACATGTCATTTGTATCCTAATCTATTCCTAAGGT
76651473 TCA
1 TCA
76651476 ACTGGGATTT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.37
Consensus pattern (52 bp):
TCATAATAACCCCTAGTGACATGTCATTTGTATCCTAATCTATTCCTAAGGT
Done.