Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 246 of 433
Found at i:76656195 original size:29 final size:29
Alignment explanation
Indices: 76656150--76656219 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
76656140 GGCGATCAAT
* *
76656150 GAATACGAAAAGGGATAGCTTTGGCTATC
1 GAATATGAAAAGCGATAGCTTTGGCTATC
*
76656179 GAATATGAAAAGCGATAGCTTTGGCTATT
1 GAATATGAAAAGCGATAGCTTTGGCTATC
*
76656208 GATTATGAAAAG
1 GAATATGAAAAG
76656220 GGATGGTGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.37, C:0.10, G:0.26, T:0.27
Consensus pattern (29 bp):
GAATATGAAAAGCGATAGCTTTGGCTATC
Found at i:76656272 original size:29 final size:29
Alignment explanation
Indices: 76656211--76656281 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
76656201 GGCTATTGAT
* * * *
76656211 TATGAAAAGGGATGGTGACGACCATCAGC
1 TATGGAAAGGGGTGGTGACAACCATCAGA
76656240 TATGGAAAGGGGTGGTGACAACCATC-GAA
1 TATGGAAAGGGGTGGTGACAACCATCAG-A
76656269 TAT-GAAGAGGGGT
1 TATGGAA-AGGGGT
76656282 AGCTTTGGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 4 0.11
29 32 0.89
ACGTcount: A:0.34, C:0.13, G:0.35, T:0.18
Consensus pattern (29 bp):
TATGGAAAGGGGTGGTGACAACCATCAGA
Found at i:76662999 original size:40 final size:39
Alignment explanation
Indices: 76662818--76662969 Score: 259
Period size: 39 Copynumber: 3.9 Consensus size: 39
76662808 AATGTTCGAG
76662818 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
76662857 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
76662896 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
76662935 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
76662970 GGTTACCATA
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 91 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:76671005 original size:77 final size:79
Alignment explanation
Indices: 76670910--76671060 Score: 261
Period size: 77 Copynumber: 1.9 Consensus size: 79
76670900 AATGTTCGAG
76670910 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG-TATGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGC
76670973 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* *
76670987 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGC
*
76671052 ATTTGTGCG
66 AATTGTGCG
76671061 GGTTACCATA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 36 0.52
78 16 0.23
79 17 0.25
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:76671076 original size:40 final size:39
Alignment explanation
Indices: 76670910--76671090 Score: 256
Period size: 39 Copynumber: 4.6 Consensus size: 39
76670900 AATGTTCGAG
76670910 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAG-TA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
76670948 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
76670987 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
76671026 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
76671066 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
76671091 TGTTTTGAAC
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
38 36 0.28
39 54 0.42
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:76676868 original size:14 final size:14
Alignment explanation
Indices: 76676849--76676877 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
76676839 ATTATCAACA
76676849 AACCATACCAAATT
1 AACCATACCAAATT
76676863 AACCATACCAAATT
1 AACCATACCAAATT
76676877 A
1 A
76676878 TGCTAAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (14 bp):
AACCATACCAAATT
Found at i:76686988 original size:43 final size:43
Alignment explanation
Indices: 76686876--76687030 Score: 122
Period size: 43 Copynumber: 3.6 Consensus size: 43
76686866 CAATACCAAC
* ** * *
76686876 GTCCTAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACT
1 GTCCTAGACATGGTCTTACACATAAATCAAATAT-GATGTCAAT
* * * * *
76686919 ATCCCAAACAGGGTCTT--ACATGAAATCAAATATGATGTCGAT
1 GTCCTAGACATGGTCTTACACAT-AAATCAAATATGATGTCAAT
* *
76686961 GTCCTAGACATGGTCTTACACATAAATCATAAGT-CGATGTCAAC
1 GTCCTAGACATGGTCTTACACATAAATCA-AA-TATGATGTCAAT
*
76687005 GTCCTAGACGTGGTCTTACAC-TAAAT
1 GTCCTAGACATGGTCTTACACATAAAT
76687031 TACATATCGG
Statistics
Matches: 88, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
41 2 0.02
42 19 0.22
43 33 0.38
44 33 0.38
45 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (43 bp):
GTCCTAGACATGGTCTTACACATAAATCAAATATGATGTCAAT
Found at i:76691965 original size:18 final size:18
Alignment explanation
Indices: 76691919--76691966 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
76691909 TTATTAATAT
*
76691919 AAACATTTTAAATTAAAA
1 AAACATTTTAAACTAAAA
* ** *
76691937 AAATAAATTAAACTAGAA
1 AAACATTTTAAACTAAAA
76691955 AAACATTTTAAA
1 AAACATTTTAAA
76691967 TCTTAATTAG
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.29
Consensus pattern (18 bp):
AAACATTTTAAACTAAAA
Found at i:76697837 original size:40 final size:40
Alignment explanation
Indices: 76697782--76697862 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
76697772 ATCAAATAAT
76697782 AAGTAAGTATCGAGTTATCGTCTCCACAGGGATTGTATTC
1 AAGTAAGTATCGAGTTATCGTCTCCACAGGGATTGTATTC
76697822 AAGTAAGTATCGAGTTATCGTCTCCACAGGGATTGTATTC
1 AAGTAAGTATCGAGTTATCGTCTCCACAGGGATTGTATTC
76697862 A
1 A
76697863 TGCTAAGTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32
Consensus pattern (40 bp):
AAGTAAGTATCGAGTTATCGTCTCCACAGGGATTGTATTC
Found at i:76703273 original size:29 final size:28
Alignment explanation
Indices: 76703241--76703428 Score: 132
Period size: 29 Copynumber: 6.5 Consensus size: 28
76703231 TATCGATTAC
76703241 GAAAAGGGATGGTGACGAACATCAACTAT
1 GAAAAGGGATGGTGACGAACATCAA-TAT
*
76703270 GAAAAGGGATGGTGACGATCATCGAATAT
1 GAAAAGGGATGGTGACGAACATC-AATAT
* * * *
76703299 GAAGAGGGATAGCT-TC-AGCTATCGAATAT
1 GAAAAGGGAT-GGTGACGAAC-ATC-AATAT
* * * * *
76703328 GAAAAGGCATAGCT-TCG-ACTATTGATTAT
1 GAAAAGGGAT-GGTGACGAAC-A-TCAATAT
*
76703357 GAAAAGGGATGGTGACGACCATCAACTAT
1 GAAAAGGGATGGTGACGAACATCAA-TAT
* *
76703386 GAAATGGGATGGTGACGACCATCAATTAAT
1 GAAAAGGGATGGTGACGAACATCAA-T-AT
76703416 GAAAAGGGATGGT
1 GAAAAGGGATGGT
76703429 TTTAACCATC
Statistics
Matches: 131, Mismatches: 19, Indels: 17
0.78 0.11 0.10
Matches are distributed among these distances:
28 6 0.05
29 105 0.80
30 20 0.15
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.22
Consensus pattern (28 bp):
GAAAAGGGATGGTGACGAACATCAATAT
Found at i:76703294 original size:58 final size:57
Alignment explanation
Indices: 76703232--76703428 Score: 177
Period size: 58 Copynumber: 3.4 Consensus size: 57
76703222 AGCTTCGGCT
*
76703232 ATCGATTACGAAAAGGGATGGTGACGAACATCAACTATGAAAAGGGATGGTGACGATC
1 ATCGATTATGAAAAGGGATGGTGACGAACATCAACTATGAAAAGGGATGGTGACGA-C
* * * * * * * *
76703290 ATCGAATATGAAGAGGGATAGCT-TC-AGCTATCGAA-TATGAAAAGGCATAGCT-TCGAC
1 ATCGATTATGAAAAGGGAT-GGTGACGAAC-ATC-AACTATGAAAAGGGAT-GGTGACGAC
* * *
76703347 TATTGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAATGGGATGGTGACGACC
1 -ATCGATTATGAAAAGGGATGGTGACGAACATCAACTATGAAAAGGGATGGTGACGA-C
*
76703406 ATCAATTAATGAAAAGGGATGGT
1 ATCGATT-ATGAAAAGGGATGGT
76703429 TTTAACCATC
Statistics
Matches: 107, Mismatches: 21, Indels: 21
0.72 0.14 0.14
Matches are distributed among these distances:
57 9 0.08
58 74 0.69
59 24 0.22
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.22
Consensus pattern (57 bp):
ATCGATTATGAAAAGGGATGGTGACGAACATCAACTATGAAAAGGGATGGTGACGAC
Found at i:76706228 original size:16 final size:15
Alignment explanation
Indices: 76706207--76706236 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
76706197 GAATGGAGTA
76706207 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
76706223 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
76706237 TAAAACAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:76708314 original size:24 final size:24
Alignment explanation
Indices: 76708282--76708364 Score: 157
Period size: 24 Copynumber: 3.5 Consensus size: 24
76708272 AATCTCAAAT
76708282 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
76708306 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
76708330 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
76708354 GCACTATGTGT
1 GCACTATGTGT
76708365 ACGAACATAA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:76708334 original size:48 final size:48
Alignment explanation
Indices: 76708282--76708390 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
76708272 AATCTCAAAT
* ** *
76708282 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTACGAACATAATA-A
76708330 GCACTATGTGTGCGATTTACTATGGCACTATGTGTACGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTACGAACATAATAA
76708378 GCACTATGTGTGC
1 GCACTATGTGTGC
76708391 AACGTTTGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 51 0.91
49 5 0.09
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTACGAACATAATAA
Found at i:76710345 original size:29 final size:29
Alignment explanation
Indices: 76710283--76710385 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
76710273 GTGACGAGAT
* * *
76710283 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
76710312 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
76710341 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
76710370 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76710386 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:76720542 original size:40 final size:40
Alignment explanation
Indices: 76720498--76720665 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
76720488 TCGAATATAA
76720498 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
76720538 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
76720578 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
76720618 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
76720658 CCGGATAT
1 CCGGATAT
76720666 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:76724092 original size:40 final size:40
Alignment explanation
Indices: 76724034--76724201 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
76724024 CAATTGAATG
* *
76724034 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
76724075 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
76724114 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
76724154 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
76724194 ATATCCGG
1 ATATCCGG
76724202 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:76724172 original size:80 final size:79
Alignment explanation
Indices: 76724034--76724201 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
76724024 CAATTGAATG
* * *
76724034 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
76724099 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
76724114 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
76724178 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
76724194 ATATCCGG
1 ATATCCGG
76724202 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:76732814 original size:68 final size:70
Alignment explanation
Indices: 76732742--76732939 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
76732732 ACACCCTGTA
* * * *
76732742 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
76732804 ATAAAT
65 ATAAAT
*
76732810 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
76732875 ATAAAT
65 ATAAAT
*
76732881 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
76732940 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:76732853 original size:41 final size:41
Alignment explanation
Indices: 76732808--76732925 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
76732798 TGAAAGATAA
76732808 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
76732849 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76732879 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76732920 ATGTAG
1 ATGTAG
76732926 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:76732865 original size:71 final size:71
Alignment explanation
Indices: 76732776--76732939 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76732766 GAGATGTATC
76732776 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76732841 AGGACA
66 AGGACA
76732847 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76732912 AGGACA
66 AGGACA
76732918 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
76732940 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:76740381 original size:68 final size:70
Alignment explanation
Indices: 76740309--76740506 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
76740299 ACACCCTGTA
* * * *
76740309 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
76740371 ATAAAT
65 ATAAAT
*
76740377 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
76740442 ATAAAT
65 ATAAAT
*
76740448 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
76740507 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:76740420 original size:41 final size:41
Alignment explanation
Indices: 76740375--76740492 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
76740365 TGAAAGATAA
76740375 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
76740416 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76740446 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
76740487 ATGTAG
1 ATGTAG
76740493 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:76740432 original size:71 final size:71
Alignment explanation
Indices: 76740343--76740506 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76740333 GAGATGTATC
76740343 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76740408 AGGACA
66 AGGACA
76740414 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
76740479 AGGACA
66 AGGACA
76740485 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
76740507 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:76741912 original size:40 final size:40
Alignment explanation
Indices: 76741806--76741916 Score: 161
Period size: 39 Copynumber: 2.8 Consensus size: 40
76741796 AGGGGTGTTA
* * *
76741806 CGAAGGCATTTCGTGCAAGTTGTTATATCCGGGCTAATACC
1 CGAAGGCA-TTCGTGCGAGTCGTTATATCCGGGCTAAGACC
76741847 CGAAGGCATT-GTGCGAGTCGTTATATCCGGGCTAAGACC
1 CGAAGGCATTCGTGCGAGTCGTTATATCCGGGCTAAGACC
* *
76741886 CGAAGGCATTCGTGCGCGTGGTTATATCCGG
1 CGAAGGCATTCGTGCGAGTCGTTATATCCGG
76741917 TTGTATTCCG
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 36 0.56
40 20 0.31
41 8 0.12
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTCGTGCGAGTCGTTATATCCGGGCTAAGACC
Found at i:76749666 original size:40 final size:40
Alignment explanation
Indices: 76749600--76749750 Score: 169
Period size: 40 Copynumber: 3.8 Consensus size: 40
76749590 AACTAAGATA
** * * *
76749600 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGACT
1 CGAAGGCATTTATGCGAGTCGCTATATCCGGGCTAAGACC
* * *
76749640 TGAAGGCATTTATGCTAG-CGATTATATCCGGGCTAAGACC
1 CGAAGGCATTTATGCGAGTCG-CTATATCCGGGCTAAGACC
* *
76749680 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACC
1 CGAAGGCATTTATGCGAGTCGCTATATCCGGGCTAAGACC
* * *
76749720 CGAAGGCATTTGTGCGAGTTGTTATATCCGG
1 CGAAGGCATTTATGCGAGTCGCTATATCCGG
76749751 TTAAATCCCG
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 93 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTTATGCGAGTCGCTATATCCGGGCTAAGACC
Found at i:76749745 original size:80 final size:80
Alignment explanation
Indices: 76749600--76749750 Score: 223
Period size: 80 Copynumber: 1.9 Consensus size: 80
76749590 AACTAAGATA
* ** *
76749600 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGACTTGAAGGCATTTATGCTAGCGATTAT
1 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGCGATTAT
76749665 ATCCGGGCTAAGACC
66 ATCCGGGCTAAGACC
* * *
76749680 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTA
1 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-CGATTA
76749744 TATCCGG
65 TATCCGG
76749751 TTAAATCCCG
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
80 62 0.98
81 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (80 bp):
CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGCGATTAT
ATCCGGGCTAAGACC
Found at i:76751525 original size:19 final size:20
Alignment explanation
Indices: 76751497--76751543 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
76751487 AAGAACAGGT
76751497 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
76751518 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
76751537 TATATAT
1 TATATAT
76751544 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:76762325 original size:46 final size:45
Alignment explanation
Indices: 76762237--76762334 Score: 137
Period size: 46 Copynumber: 2.2 Consensus size: 45
76762227 GTGCCAATGC
*
76762237 CATGTCCCAGACATAGTCTTACACTAACACGTCTCGTAGCCGATG
1 CATGTCCCAAACATAGTCTTACACTAACACGTCTCGTAGCCGATG
*
76762282 CATGTCCCAAACAT-GTCTTACACTGACTTACGTCTCG-AGGCCGATG
1 CATGTCCCAAACATAGTCTTACACTAAC--ACGTCTCGTA-GCCGATG
76762328 CATGTCC
1 CATGTCC
76762335 TAAATGTAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
44 12 0.25
45 14 0.29
46 22 0.46
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (45 bp):
CATGTCCCAAACATAGTCTTACACTAACACGTCTCGTAGCCGATG
Found at i:76763090 original size:31 final size:31
Alignment explanation
Indices: 76763049--76763112 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76763039 CCTTTTCATA
*
76763049 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
76763080 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
76763111 TT
1 TT
76763113 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:76763381 original size:23 final size:24
Alignment explanation
Indices: 76763320--76763494 Score: 275
Period size: 24 Copynumber: 7.4 Consensus size: 24
76763310 CTAGAGGCCT
*
76763320 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
76763345 AGCCCTTTTAATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
76763369 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
76763392 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
76763416 AGCCCTTTTGATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
76763439 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
76763463 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
76763486 AGCCCTTTT
1 AGCCCTTTT
76763495 TCACTTCCTC
Statistics
Matches: 142, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 67 0.47
24 71 0.50
25 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:76763396 original size:47 final size:47
Alignment explanation
Indices: 76763327--76763494 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
76763317 CCTAGCCTCT
* * *
76763327 TTTAATAACTGGGGCAAAAGCCCTTTTAATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
76763374 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
76763421 TTTTGATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
76763468 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
76763495 TCACTTCCTC
Statistics
Matches: 114, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
46 9 0.08
47 96 0.84
48 9 0.08
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:76763567 original size:9 final size:9
Alignment explanation
Indices: 76763553--76763609 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
76763543 ATCTCGTGTG
76763553 CATATCATA
1 CATATCATA
*
76763562 CATATCATGTG
1 CATATCA--TA
76763573 CATATCATA
1 CATATCATA
* *
76763582 CATGTCATGTG
1 CATATCA--TA
76763593 CATATCATA
1 CATATCATA
76763602 CATATCAT
1 CATATCAT
76763610 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:76763572 original size:20 final size:20
Alignment explanation
Indices: 76763549--76763611 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
76763539 GAACATCTCG
76763549 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
76763569 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
76763589 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
76763609 TGT
1 TGT
76763612 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:76765175 original size:27 final size:27
Alignment explanation
Indices: 76764952--76765231 Score: 167
Period size: 27 Copynumber: 10.3 Consensus size: 27
76764942 ATCTACAAAC
* * *
76764952 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
76764979 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
* *
76765008 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* *
76765035 C-AGGTGTATTTTGGTAATTTTACAAAT
1 CAAGG-GTATTTTAGTAATTTTATAAAT
** ** * * *
76765062 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
76765089 CAAGGGTATTTT-GATAATTTTACAAA-
1 CAAGGGTATTTTAG-TAATTTTATAAAT
* * *
76765115 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTAGTAATTTTATAAAT
*
76765142 CTAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTAGTAATTTTATAAAT
* *** *
76765170 CGAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*** *
76765197 CAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
76765224 CGAGGGTA
1 CAAGGGTA
76765232 AAACTGTAAT
Statistics
Matches: 209, Mismatches: 33, Indels: 22
0.79 0.12 0.08
Matches are distributed among these distances:
26 6 0.03
27 169 0.81
28 19 0.09
29 15 0.07
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:76765232 original size:27 final size:27
Alignment explanation
Indices: 76765154--76765366 Score: 227
Period size: 27 Copynumber: 7.9 Consensus size: 27
76765144 AAGGGTATTT
*
76765154 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
76765181 TAGTAATTCTATAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
76765208 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
76765235 CT-GTAATTCTGTTAATCGAGGGTAAAA
1 -TAGTAATTCTGTAAATCGAGGGTAAAA
** *
76765262 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
76765289 -CGATAATTATGTAAATC-AGGTGTAAAA
1 TAG-TAATTCTGTAAATCGAGG-GTAAAA
* * *
76765316 TGGTAATTATGTAAATCGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
76765343 -CGATAATTCTGTAAATCGGGGGTA
1 TAG-TAATTCTGTAAATCGAGGGTA
76765367 CTTTGGTAAT
Statistics
Matches: 163, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
26 5 0.03
27 154 0.94
28 4 0.02
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:76765377 original size:54 final size:54
Alignment explanation
Indices: 76765156--76765359 Score: 252
Period size: 54 Copynumber: 3.8 Consensus size: 54
76765146 GGGTATTTTA
* * * *
76765156 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCAAGGGTAAAATG
* * * *
76765210 GTAATTCTATAAATCGAGGGTAAAACTG-TAATTCTGTTAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAAC-GATAATTCTGTAAATCAAGGGTAAAATG
* *
76765264 GTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATC-AGGTGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGG-GTAAAATG
* *
76765318 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATC
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATC
76765360 GGGGGTACTT
Statistics
Matches: 129, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
53 4 0.03
54 125 0.97
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAATG
Found at i:76765393 original size:27 final size:27
Alignment explanation
Indices: 76765372--76765461 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
76765362 GGGTACTTTG
*
76765372 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
76765399 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
76765426 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
76765453 GTAATTTTA
1 GTAATTTTA
76765462 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:76765413 original size:54 final size:54
Alignment explanation
Indices: 76765355--76765461 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
76765345 ATAATTCTGT
* * *
76765355 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
76765409 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
76765462 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:76765475 original size:27 final size:27
Alignment explanation
Indices: 76765372--76765476 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
76765362 GGGTACTTTG
* *
76765372 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
76765399 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
76765426 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
76765453 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
76765477 ATAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:76768833 original size:300 final size:299
Alignment explanation
Indices: 76768279--76768877 Score: 1117
Period size: 300 Copynumber: 2.0 Consensus size: 299
76768269 GCCTTTAAGT
*
76768279 AGTCACAAATCATTTAACTTTCTCTTCAGTCTTTTTGATTAAATTGACTCTATGAATCTGACTCT
1 AGTCACAAATCATTTAACTTTCTCTTCAGTCTTTTTGATTAAATCGACTCTATGAATCTGACTCT
* *
76768344 CTTTGAGTTCTGTCCAATATAAGGGCGTTCGACACTTTCGTCCATAAAAAACCCCATAAGGCGCC
66 CTTTGAGATCTGTCCAATATAAGGGCGTTCGACACTATCGTCCATAAAAAACCCCATAAGGCGCC
76768409 ATCTTCAAACTTGTCTGATAACTGTTGATGTAGGCGAATTCAACCAATGGCAAATACCTTTCCCA
131 ATCTTCAAACTTGTCTGATAACTGTTGATGTAGGCGAATTCAACCAATGGCAAATACCTTTCCCA
76768474 ACTGCCTTGAAACTTGAGAACACAACACCGCAACATGTCTTCTAAAATCTGAATCACTCTTTCCG
196 ACTGCCTTGAAACTTGAGAACACAACACCGCAACATGTCTTCTAAAATCTGAATCACTCTTTCCG
76768539 ACTGGCCGTCTGTTTGCGAGTGAAAAGCTGTGCTAAAAC
261 ACTGGCCGTCTGTTTGCGAGTGAAAAGCTGTGCTAAAAC
*
76768578 AGTCACAAATCACTTTAACTTTCTCTTTAGTCTTTTTGATTAAATCGACTCTATGAATCTGACTC
1 AGTCACAAATCA-TTTAACTTTCTCTTCAGTCTTTTTGATTAAATCGACTCTATGAATCTGACTC
76768643 TCTTTGAGATCTGTCCAATATAAGGGCGTTCGACACTATCGTCCATAAAAAACCCCATAAGGCGC
65 TCTTTGAGATCTGTCCAATATAAGGGCGTTCGACACTATCGTCCATAAAAAACCCCATAAGGCGC
*
76768708 CATCTTCAAACTTGTCTGATAACTGTTGTTGTAGGCGAATTCAACCAATGGCAAATACCTTTCCC
130 CATCTTCAAACTTGTCTGATAACTGTTGATGTAGGCGAATTCAACCAATGGCAAATACCTTTCCC
* *
76768773 AACTGCCTTGAAACTTGAGAACGCAACACCGCAACATGTCTTCTAAAATCTGAATCACTCTTTCT
195 AACTGCCTTGAAACTTGAGAACACAACACCGCAACATGTCTTCTAAAATCTGAATCACTCTTTCC
*
76768838 GACTGGTCGTCTGTTTGCGAGTGAAAAGCTGTGCTAAAAC
260 GACTGGCCGTCTGTTTGCGAGTGAAAAGCTGTGCTAAAAC
76768878 TCAACCTTGT
Statistics
Matches: 291, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
299 12 0.04
300 279 0.96
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (299 bp):
AGTCACAAATCATTTAACTTTCTCTTCAGTCTTTTTGATTAAATCGACTCTATGAATCTGACTCT
CTTTGAGATCTGTCCAATATAAGGGCGTTCGACACTATCGTCCATAAAAAACCCCATAAGGCGCC
ATCTTCAAACTTGTCTGATAACTGTTGATGTAGGCGAATTCAACCAATGGCAAATACCTTTCCCA
ACTGCCTTGAAACTTGAGAACACAACACCGCAACATGTCTTCTAAAATCTGAATCACTCTTTCCG
ACTGGCCGTCTGTTTGCGAGTGAAAAGCTGTGCTAAAAC
Found at i:76774367 original size:44 final size:46
Alignment explanation
Indices: 76774303--76774466 Score: 140
Period size: 46 Copynumber: 3.5 Consensus size: 46
76774293 GTGCCGATTC
* *
76774303 CATGTCCTAGGCATGGTCTTACACTG-A-CACGTCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGAATCACGTCTCG-AGGCCGATG
* * *
76774348 CATGTCTCAGACATGTCTTACACTGAATTACGTCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGAATCACGTCTCGAGGCCGATG
* * * * *
76774394 CATGTCCCAGACATATCTTACACTAGCATTCA--TCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACT-G-AATCACGTCTCGAGGCCGATG
*
76774440 CCATGTCCCAGACACGGTCTTACACTG
1 -CATGTCCCAGACA-TGTCTTACACTG
76774467 GCTCTCAAAA
Statistics
Matches: 97, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
44 11 0.11
45 13 0.13
46 46 0.47
47 15 0.15
48 12 0.12
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGAATCACGTCTCGAGGCCGATG
Found at i:76782177 original size:47 final size:46
Alignment explanation
Indices: 76782107--76782276 Score: 157
Period size: 47 Copynumber: 3.7 Consensus size: 46
76782097 CATCCACAAG
*
76782107 TGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
* * * * * ***
76782153 TCGAACTTAGACTCAACTCAACGAGTTTGGACATTCGC-A--TCCATAAG
1 T-GAACTCAGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTC
*
76782200 TGAACTCAGACTCAACTCAACGAGCTCGGATGGCTAGTTACATCTC
1 TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
* * *
76782246 TTGAACTCGGACTGAACTCAACGAGTTCGGA
1 -TGAACTCAGACTCAACTCAACGAGCTCGGA
76782277 CATTCGCATC
Statistics
Matches: 95, Mismatches: 21, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 30 0.32
47 56 0.59
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
Found at i:76782190 original size:93 final size:93
Alignment explanation
Indices: 76782061--76782326 Score: 406
Period size: 93 Copynumber: 2.9 Consensus size: 93
76782051 CACCCATAAG
* * * * *
76782061 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
76782126 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * *
76782154 CGAACTTAGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
76782219 ACGAGCTCGGATGGCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * * *
76782247 TGAACTCGGACTGAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCT
1 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
76782312 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
76782327 CAAATATCCT
Statistics
Matches: 155, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 155 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:76782322 original size:46 final size:46
Alignment explanation
Indices: 76782054--76782322 Score: 221
Period size: 46 Copynumber: 5.8 Consensus size: 46
76782044 TGTAACCCAC
* * *
76782054 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
76782100 CCACAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** ** * *
76782146 ACATCTCTCGAACTTAGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
76782193 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGGCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
76782243 CTC-T---TGAACTCGGACTGAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
76782286 CCATAAGTGAACTCGGACTCAACTCTACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
76782323 TGCCCAAATA
Statistics
Matches: 177, Mismatches: 28, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
42 3 0.02
43 7 0.04
44 4 0.02
46 92 0.52
47 56 0.32
49 5 0.03
50 7 0.04
51 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:76788113 original size:17 final size:17
Alignment explanation
Indices: 76788093--76788130 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
76788083 CTTTTATTAA
76788093 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCATTT
*
76788110 GTTTTTATGATTCATTT
1 GTTTTTAAGATTCATTT
76788127 -TTTT
1 GTTTT
76788131 CCTTGTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.18, C:0.05, G:0.11, T:0.66
Consensus pattern (17 bp):
GTTTTTAAGATTCATTT
Found at i:76794868 original size:40 final size:39
Alignment explanation
Indices: 76794802--76794967 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
76794792 GAAATTGATG
* * *
76794802 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
76794841 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
76794880 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
76794920 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
76794960 ATATCCGG
1 ATATCCGG
76794968 ATATATTTCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:76797294 original size:23 final size:23
Alignment explanation
Indices: 76797268--76797314 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
76797258 AAGTCTTTCA
76797268 ACAAGCATCGAAGAGATTTCGAG
1 ACAAGCATCGAAGAGATTTCGAG
76797291 ACAAGCATCGAAGAGATTTCGAG
1 ACAAGCATCGAAGAGATTTCGAG
76797314 A
1 A
76797315 TGATGCGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (23 bp):
ACAAGCATCGAAGAGATTTCGAG
Found at i:76806708 original size:40 final size:40
Alignment explanation
Indices: 76806650--76806817 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
76806640 CAATTGAATG
* *
76806650 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
76806691 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
76806730 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
76806770 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
76806810 ATATCCGG
1 ATATCCGG
76806818 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:76806788 original size:80 final size:79
Alignment explanation
Indices: 76806650--76806817 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
76806640 CAATTGAATG
* * *
76806650 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
76806715 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
76806730 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
76806794 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
76806810 ATATCCGG
1 ATATCCGG
76806818 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:76810766 original size:28 final size:29
Alignment explanation
Indices: 76810699--76810770 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 29
76810689 ATAGTGAATC
*
76810699 CGCACACTTAGTGCTATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATTCAACT
76810728 CGCACACTTAGTGCTATATA-A-TCAAACT
1 CGCACACTTAGTGCTATATATATTC-AACT
76810756 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76810771 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATTCAACT
Found at i:76810792 original size:30 final size:28
Alignment explanation
Indices: 76810698--76810799 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 28
76810688 TATAGTGAAT
* *
76810698 CCGCACACTTAGTGCTATATATATTC-AGC
1 CCGCACACTTAGTGCTATACA-A-TCAAAC
* *
76810727 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
76810755 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATACAA--TCAAAC
*
76810785 CCGCACACTCAGTGC
1 CCGCACACTTAGTGC
76810800 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 20 0.32
30 18 0.29
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:76817352 original size:27 final size:28
Alignment explanation
Indices: 76817296--76817365 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
76817286 AAACTTGTAC
76817296 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
76817324 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
76817351 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
76817366 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:76817376 original size:27 final size:27
Alignment explanation
Indices: 76817296--76817377 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
76817286 AAACTTGTAC
* *
76817296 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
76817324 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
76817351 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
76817378 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:76823747 original size:20 final size:20
Alignment explanation
Indices: 76823681--76823747 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
76823671 ATTTTAGTAA
*
76823681 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
76823701 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
76823721 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
76823741 ACATGAT
1 ACATGAT
76823748 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76823828 original size:23 final size:23
Alignment explanation
Indices: 76823798--76823870 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
76823788 AGGAACTGCA
76823798 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
76823821 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
76823844 AAAAGGGCTTTTGCCCCAATTATT
1 -AAAGGGCTTATGCCCCAGTTATT
76823868 AAA
1 AAA
76823871 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:76823891 original size:25 final size:24
Alignment explanation
Indices: 76823797--76823891 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
76823787 GAGGAACTGC
76823797 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76823821 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
76823844 AAAAGGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76823868 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76823892 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.37
24 30 0.48
25 10 0.16
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:76824120 original size:31 final size:31
Alignment explanation
Indices: 76824085--76824148 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76824075 CATTTACAGT
*
76824085 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
**
76824116 AAAGGCTTCGACCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
76824147 AA
1 AA
76824149 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:76829181 original size:68 final size:64
Alignment explanation
Indices: 76829100--76829250 Score: 151
Period size: 64 Copynumber: 2.3 Consensus size: 64
76829090 TATGGTGCTG
* * * * *
76829100 AGTGCACATCATGTGTACAAGAGGGCTACGAGACATTATGATGTAGCTAGGTCGTATGGGTGATA
1 AGTGTACACCATGTGTACAAGAGAGCTACG-G-CA-TAT-ATGTAGCTAGGTCGCATAGGTGATA
76829165 ATA
62 ATA
* * * *
76829168 TGTGTACACCATGTAG-ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATAGGTGGTACTA
1 AGTGTACACCATGT-GTACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATAGGTGATAATA
* *
76829232 AGTGTTCACCATTTGTACA
1 AGTGTACACCATGTGTACA
76829251 GAAGAGCCAA
Statistics
Matches: 69, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
63 1 0.01
64 38 0.55
65 3 0.04
66 1 0.01
67 1 0.01
68 24 0.35
69 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (64 bp):
AGTGTACACCATGTGTACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATAGGTGATAATA
Found at i:76834950 original size:43 final size:43
Alignment explanation
Indices: 76834897--76835005 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
76834887 ATAGCTACGA
* *
76834897 CTAATTAATTGGCACTAAGTGTGGGATACAATTAGAGCCTCGG
1 CTAATTAATTGGCACTAAGTGTGCGATACAATTAGAGCCTCAG
* * *
76834940 CTAATTAATTGGCACTAAGTGAGCGATACAATTATAGCTTCAG
1 CTAATTAATTGGCACTAAGTGTGCGATACAATTAGAGCCTCAG
***
76834983 CTAATTAATCAACACTAAGTGTG
1 CTAATTAATTGGCACTAAGTGTG
76835006 TGAGTTCATT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (43 bp):
CTAATTAATTGGCACTAAGTGTGCGATACAATTAGAGCCTCAG
Found at i:76837391 original size:11 final size:11
Alignment explanation
Indices: 76837377--76837403 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
76837367 GATTAAAAAC
76837377 AAATGATTTGA
1 AAATGATTTGA
76837388 AAATGATTTGA
1 AAATGATTTGA
76837399 AAATG
1 AAATG
76837404 TGAAATTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (11 bp):
AAATGATTTGA
Found at i:76841308 original size:43 final size:43
Alignment explanation
Indices: 76841261--76841352 Score: 168
Period size: 43 Copynumber: 2.1 Consensus size: 43
76841251 GAAATAGCTA
76841261 CGGCTAATTAATTGG-CACTAAGTGTGTGATACAATTATAGCCT
1 CGGCTAATTAATTGGAC-CTAAGTGTGTGATACAATTATAGCCT
76841304 CGGCTAATTAATTGGACCTAAGTGTGTGATACAATTATAGCCT
1 CGGCTAATTAATTGGACCTAAGTGTGTGATACAATTATAGCCT
76841347 CGGCTA
1 CGGCTA
76841353 TGTGTGCGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 47 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
CGGCTAATTAATTGGACCTAAGTGTGTGATACAATTATAGCCT
Found at i:76841381 original size:72 final size:72
Alignment explanation
Indices: 76841282--76841416 Score: 227
Period size: 72 Copynumber: 1.9 Consensus size: 72
76841272 TTGGCACTAA
*
76841282 GTGTGTGATACAATTATAGCCTCGGCTAATTAATTGG-ACCTAAGTGTGTGATACAATTATAGCC
1 GTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCA-CTAAGTGTGTGATACAATTATAGCC
76841346 TCGGCTAT
65 TCGGCTAT
* *
76841354 GTGTGCGATACAATTATAGCTTTGGCTAATTAATTGGCACTAAGTGTGTGATACAATTATAGC
1 GTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTAAGTGTGTGATACAATTATAGC
76841417 TTCAGCTAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
72 58 0.98
73 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (72 bp):
GTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTAAGTGTGTGATACAATTATAGCCT
CGGCTAT
Found at i:76841408 original size:43 final size:43
Alignment explanation
Indices: 76841354--76841447 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
76841344 CCTCGGCTAT
** *
76841354 GTGTGCGATACAATTATAGCTTTGGCTAATTAATTGGCACTAA
1 GTGTGCGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
*
76841397 GTGTGTGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
1 GTGTGCGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
76841440 GTGTGCGA
1 GTGTGCGA
76841448 GTTCGTTGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (43 bp):
GTGTGCGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
Found at i:76842684 original size:28 final size:28
Alignment explanation
Indices: 76842623--76842684 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
76842613 CTCAGTTACG
* *
76842623 AAATATTGAGAATGGCACTTAGTGTGCG
1 AAATATTGAGAATGACACTTAGTGTGCA
*
76842651 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
76842679 AAATAT
1 AAATAT
76842685 CGAATGATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGTGCA
Found at i:76845047 original size:24 final size:24
Alignment explanation
Indices: 76845011--76845087 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
76845001 AAGTCTGTCA
*
76845011 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
76845035 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
76845059 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
76845083 GGAGA
1 GGAGA
76845088 ATAATGTTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.32, C:0.03, G:0.42, T:0.23
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:76846518 original size:27 final size:26
Alignment explanation
Indices: 76846478--76846561 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 26
76846468 AGGGAGCGTC
* *
76846478 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACA-TTATCTGTT
*
76846505 CTGGTGGCTCTGCCACAATTATTTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
76846532 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
76846558 CTGG
1 CTGG
76846562 CAGCAATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 13 0.26
27 36 0.72
28 1 0.02
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:76857442 original size:6 final size:6
Alignment explanation
Indices: 76857431--76857508 Score: 59
Period size: 6 Copynumber: 12.7 Consensus size: 6
76857421 AAGAAAATTG
* * * *
76857431 AAAAAT AAAAAT CAAAAG AAAAAT AAGAAT AAAATAA ATAAAAT AAAAA-
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT A-AAAAT AAAAAT
* * *
76857480 AATAAG AATAAAT AAAATT AAAAAT AAAA
1 AAAAAT AA-AAAT AAAAAT AAAAAT AAAA
76857509 TAGGAGGATT
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
5 4 0.07
6 40 0.73
7 8 0.15
8 3 0.05
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:76857466 original size:5 final size:5
Alignment explanation
Indices: 76857450--76857510 Score: 58
Period size: 5 Copynumber: 12.2 Consensus size: 5
76857440 AATCAAAAGA
76857450 AAAAT AAGAAT AAAAT -AAAT AAAAT -AAA- AAAAT AAGAAT -AAAT AAAATT
1 AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAA-T
76857499 AAAAAT AAAAT A
1 -AAAAT AAAAT A
76857511 GGAGGATTCA
Statistics
Matches: 48, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
4 13 0.27
5 21 0.44
6 10 0.21
7 4 0.08
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:76857493 original size:23 final size:21
Alignment explanation
Indices: 76857450--76857510 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
76857440 AATCAAAAGA
*
76857450 AAAAT-AAGAATAAAATAAAT
1 AAAATAAAAAATAAAATAAAT
76857470 AAAATAAAAAAATAAGAATAAAT
1 AAAAT-AAAAAATAA-AATAAAT
*
76857493 AAAATTAAAAATAAAATA
1 AAAATAAAAAATAAAATA
76857511 GGAGGATTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
20 5 0.14
21 4 0.11
22 15 0.42
23 12 0.33
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (21 bp):
AAAATAAAAAATAAAATAAAT
Found at i:76857497 original size:28 final size:28
Alignment explanation
Indices: 76857416--76857508 Score: 86
Period size: 28 Copynumber: 3.3 Consensus size: 28
76857406 TATGTCTTTC
* *
76857416 AAAATAAGAAAAT-TGAA-AAATAAAAAT
1 AAAATAAAAAAATAAGAATAAAT-AAAAT
* *
76857443 CAAA-AGAAAAATAAGAATAAA-ATAAAT
1 AAAATAAAAAAATAAGAATAAATA-AAAT
76857470 AAAATAAAAAAATAAGAATAAATAAAATT
1 AAAATAAAAAAATAAGAATAAATAAAA-T
76857499 AAAAATAAAA
1 -AAAATAAAA
76857509 TAGGAGGATT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
26 7 0.13
27 13 0.25
28 22 0.42
29 2 0.04
30 9 0.17
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.17
Consensus pattern (28 bp):
AAAATAAAAAAATAAGAATAAATAAAAT
Found at i:76862390 original size:31 final size:31
Alignment explanation
Indices: 76862352--76862410 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
76862342 AGGTCTAACA
76862352 ATACTTGATTCAGTTCCTGTTAAAGAGGACT
1 ATACTTGATTCAGTTCCTGTTAAAGAGGACT
76862383 ATACTTGATTCAGTTCCTGTTAAAGAGG
1 ATACTTGATTCAGTTCCTGTTAAAGAGG
76862411 GTTTAGCATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (31 bp):
ATACTTGATTCAGTTCCTGTTAAAGAGGACT
Found at i:76862703 original size:5 final size:5
Alignment explanation
Indices: 76862693--76862717 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76862683 ATAAATAGTA
76862693 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
76862718 GCAAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:76868358 original size:46 final size:46
Alignment explanation
Indices: 76868208--76868457 Score: 201
Period size: 45 Copynumber: 5.3 Consensus size: 46
76868198 AATCAGATAT
* *
76868208 ACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCTAGTGTAAG
1 ACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCTAGTGTAAG
** * *
76868254 ACCATGTCTGGGACATGGCATCGGTATTGAGGTGAGAGCTAGTGTAAG
1 A-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCTAGTGTAAG
*
76868302 ACATG-CTGGGACATGCATCGGCCTCGAGATGTA-AGCGAGTGTAAG
1 ACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCTAGTGTAAG
* * * *
76868347 ACATGTTTGGGACATGCATC-GACTACGAGATGTG-TC-AGTGTAAG
1 ACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCTAGTGTAAG
* * *
76868391 ACCATTTCTGGGACATGACAT-GAGCAC-AGATAAGTGAGAGCTAGTGTAAG
1 A-CATGTCTGGGACATG-CATCG-GC-CTCGA-GA-TGAGAGCTAGTGTAAG
*
76868441 ACCATGTTTGGGACATG
1 A-CATGTCTGGGACATG
76868458 GCATTGGGCT
Statistics
Matches: 164, Mismatches: 24, Indels: 28
0.76 0.11 0.13
Matches are distributed among these distances:
44 9 0.05
45 46 0.28
46 36 0.22
47 20 0.12
48 28 0.17
49 2 0.01
50 23 0.14
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (46 bp):
ACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCTAGTGTAAG
Found at i:76869735 original size:21 final size:20
Alignment explanation
Indices: 76869711--76869750 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
76869701 GTTATAATGA
*
76869711 CCACACAGGCGTGTTGCCCTT
1 CCACACAGGCATG-TGCCCTT
76869732 CCACACAGGCATGTGCCCT
1 CCACACAGGCATGTGCCCT
76869751 ATTTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.17, C:0.40, G:0.23, T:0.20
Consensus pattern (20 bp):
CCACACAGGCATGTGCCCTT
Found at i:76872083 original size:18 final size:18
Alignment explanation
Indices: 76872056--76872099 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
76872046 TGGTGGTTTT
* *
76872056 TAATTAAGGCTAATGTTG
1 TAATTTAGGCTAATGCTG
76872074 TAATTTAGGCTAATGCTG
1 TAATTTAGGCTAATGCTG
76872092 TAATTTAG
1 TAATTTAG
76872100 TAATAAAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (18 bp):
TAATTTAGGCTAATGCTG
Found at i:76872944 original size:40 final size:40
Alignment explanation
Indices: 76872877--76872953 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
76872867 CAGTTATTTG
*
76872877 TGGCACTTAGTGTGCAATACGACATAGCTTTGGCTATATA
1 TGGCACTTAGTGTGCAATACGACATAGCTTCGGCTATATA
* ** *
76872917 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTAT
1 TGGCACTTAGTGTGCAATACGACATAGCTTCGGCTAT
76872954 GTACAACACT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCAATACGACATAGCTTCGGCTATATA
Found at i:76875531 original size:41 final size:43
Alignment explanation
Indices: 76875474--76875563 Score: 121
Period size: 41 Copynumber: 2.1 Consensus size: 43
76875464 TAGGGTTAGT
*
76875474 TGAGATTAAGTGTAAGACCATATC-GAGATA-TGGCATCGATA
1 TGAGATTAAGTGTAAGACCATAGCTGAGATATTGGCATCGATA
** * *
76875515 TGAGATTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTAAGTGTAAGACCATAGCTGAGATATTGGCATCGATA
76875558 TGAGAT
1 TGAGAT
76875564 CCCATGTAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 21 0.50
42 4 0.10
43 17 0.40
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (43 bp):
TGAGATTAAGTGTAAGACCATAGCTGAGATATTGGCATCGATA
Found at i:76875888 original size:15 final size:16
Alignment explanation
Indices: 76875868--76875898 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
76875858 CACAAAAACA
76875868 TTTATGTT-AATTTAT
1 TTTATGTTAAATTTAT
76875883 TTTATGTTAAATTTAT
1 TTTATGTTAAATTTAT
76875899 GTTAAAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTATGTTAAATTTAT
Found at i:76882223 original size:7 final size:7
Alignment explanation
Indices: 76882207--76882240 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
76882197 ATCCTTGCTT
76882207 TTTTCTC
1 TTTTCTC
*
76882214 TTTCCTC
1 TTTTCTC
76882221 TTTTCTC
1 TTTTCTC
76882228 TTTTCTC
1 TTTTCTC
76882235 TTTTCT
1 TTTTCT
76882241 TATTTATAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTTCTC
Found at i:76892561 original size:27 final size:27
Alignment explanation
Indices: 76892531--76892710 Score: 225
Period size: 27 Copynumber: 6.7 Consensus size: 27
76892521 TGGATAAGTT
* * *
76892531 GTAGAATTACCAAAATACCCCTGTAAG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
76892558 GTAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * *
76892585 GTAGAATTATTGAAAAACCCCTATAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
76892612 GTAGAATTATCGAAATACCGCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* *
76892639 ATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * *
76892666 GTAGAAATACCGAAACACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* *
76892693 GTAGAATTACCGAGATAC
1 GTAGAATTATCGAAATAC
76892711 ATTTGTGGGG
Statistics
Matches: 130, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 130 1.00
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAGG
Found at i:76892666 original size:81 final size:81
Alignment explanation
Indices: 76892531--76892710 Score: 263
Period size: 81 Copynumber: 2.2 Consensus size: 81
76892521 TGGATAAGTT
* * **
76892531 GTAGAATTACCAAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTATT
1 GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACC
76892596 GAAAAACCCCTATAGG
66 GAAAAACCCCTATAGG
* *
76892612 GTAGAATTATCGAAATACCGCTGT-AGGATAGAATTATCGAAATACCCTTGTAGGGTAGAAATAC
1 GTAGAATTACCGAAATACCCCTGTAAGG-TAGAATTATCGAAATACCCTTGTAGGGTAGAAATAC
* *
76892676 CGAAACACCCCTGTAGG
65 CGAAAAACCCCTATAGG
*
76892693 GTAGAATTACCGAGATAC
1 GTAGAATTACCGAAATAC
76892711 ATTTGTGGGG
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 3 0.03
81 85 0.97
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCCTGTAAGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACC
GAAAAACCCCTATAGG
Found at i:76899856 original size:38 final size:39
Alignment explanation
Indices: 76899777--76899938 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
76899767 TGTGAATGAA
76899777 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
76899816 TGTGCGAATTGTGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
76899854 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
76899893 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
76899933 TGTGCG
1 TGTGCG
76899939 GGTTACCATA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 35 0.31
39 62 0.54
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:76899905 original size:77 final size:78
Alignment explanation
Indices: 76899788--76899938 Score: 259
Period size: 77 Copynumber: 1.9 Consensus size: 78
76899778 GTGCGAATTG
76899788 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
76899852 ATTGTGCGAGCTA
66 ATTGTGCGAGCTA
* *
76899865 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
*
76899930 ATTTGTGCG
65 AATTGTGCG
76899939 GGTTACCATA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 53 0.77
79 16 0.23
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGCTA
Found at i:76899954 original size:40 final size:40
Alignment explanation
Indices: 76899777--76899968 Score: 239
Period size: 39 Copynumber: 4.9 Consensus size: 40
76899767 TGTGAATGAA
* *
76899777 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* *
76899816 TGTGCGAATTGTGATATCCGGGCTAAG--CCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
*
76899854 TGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* * *
76899893 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* ** * *
76899933 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGG
76899969 TGTTTTGAAC
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 35 0.26
39 62 0.45
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (40 bp):
TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:76906320 original size:40 final size:40
Alignment explanation
Indices: 76906233--76906529 Score: 386
Period size: 40 Copynumber: 7.5 Consensus size: 40
76906223 AAGCCAAGTA
* * * *
76906233 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAATG
* *
76906271 CCTTCGGGACATAGCCCGGATATAATAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * * *
76906311 CCTTCGGGACTTAGCTCGAATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
76906351 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* *
76906391 CCTTCGGGACTTAGCCCGGATGTAATAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
76906431 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * * *
76906471 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAATAACTCGCACAAATG
76906511 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
76906530 TTATCATCCG
Statistics
Matches: 232, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
38 12 0.05
39 16 0.07
40 204 0.88
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:76909834 original size:27 final size:27
Alignment explanation
Indices: 76909804--76910027 Score: 360
Period size: 27 Copynumber: 8.3 Consensus size: 27
76909794 GTTACAATTC
76909804 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
76909831 CGGTAATTCTACCCTACAGGGGTATTG
1 CGGTAATTCTACCCTACAGGGGTATTT
76909858 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
76909885 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
76909912 CGGTAATTCTACCCTACAGGGGTATTG
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
76909939 CGATAATTCTACCCTACAGGGGTATTC
1 CGGTAATTCTACCCTACAGGGGTATTT
*
76909966 CGGTAATTCTACCCTACAAGGGTA-TT
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
76909992 CTGGTAATTCTACCCTACAGGGATATTG
1 C-GGTAATTCTACCCTACAGGGGTATTT
*
76910020 CGATAATT
1 CGGTAATT
76910028 TTGTAAATCG
Statistics
Matches: 183, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
26 2 0.01
27 179 0.98
28 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (27 bp):
CGGTAATTCTACCCTACAGGGGTATTT
Found at i:76909939 original size:81 final size:81
Alignment explanation
Indices: 76909800--76910027 Score: 404
Period size: 81 Copynumber: 2.8 Consensus size: 81
76909790 GGGTGTTACA
*
76909800 ATTCCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGGTAAT
1 ATTCCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAAT
76909865 TCTACCCTACAGGGGT
66 TCTACCCTACAGGGGT
*
76909881 ATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAAT
1 ATTCCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAAT
76909946 TCTACCCTACAGGGGT
66 TCTACCCTACAGGGGT
* *
76909962 ATTCCGGTAATTCTACCCTACAAGGGTA-TTCTGGTAATTCTACCCTACAGGGATATTGCGATAA
1 ATTCCGGTAATTCTACCCTACAGGGGTATTTC-GGTAATTCTACCCTACAGGGGTATTGCGATAA
76910026 TT
65 TT
76910028 TTGTAAATCG
Statistics
Matches: 141, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
80 3 0.02
81 138 0.98
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (81 bp):
ATTCCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAAT
TCTACCCTACAGGGGT
Found at i:76910079 original size:27 final size:27
Alignment explanation
Indices: 76910032--76910122 Score: 137
Period size: 27 Copynumber: 3.4 Consensus size: 27
76910022 ATAATTTTGT
* * * *
76910032 AAATCGAGGCTGAAACGGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTAC
*
76910059 AAATCGAGGGTAAAATAGTAATTCTAC
1 AAATCGAGGGTAAAATGGTAATTCTAC
76910086 AAATCGAGGGTAAAATGGTAATTCTAC
1 AAATCGAGGGTAAAATGGTAATTCTAC
76910113 AAATCGAGGG
1 AAATCGAGGG
76910123 CATTTCAGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (27 bp):
AAATCGAGGGTAAAATGGTAATTCTAC
Found at i:76912186 original size:12 final size:12
Alignment explanation
Indices: 76912169--76912207 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
76912159 ATCTTCATTA
76912169 TTTCTTATTTAT
1 TTTCTTATTTAT
76912181 TTTCTTATTTAT
1 TTTCTTATTTAT
76912193 TTTCTT-TTTAAT
1 TTTCTTATTT-AT
76912205 TTT
1 TTT
76912208 TGATTTTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 3 0.12
12 23 0.88
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTCTTATTTAT
Found at i:76912898 original size:19 final size:19
Alignment explanation
Indices: 76912874--76912910 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
76912864 AGACCTCAAT
76912874 TATGATACTTTAGTAGAAA
1 TATGATACTTTAGTAGAAA
76912893 TATGATACTTTAGTAGAA
1 TATGATACTTTAGTAGAA
76912911 TAACTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (19 bp):
TATGATACTTTAGTAGAAA
Found at i:76915433 original size:28 final size:28
Alignment explanation
Indices: 76915365--76915434 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
76915355 ACAGTAAGTC
*
76915365 CGCACACTTAGTACTTAATATTCAAACT
1 CGCACACTTAGTGCTTAATATTCAAACT
76915393 CGCACACTTAGTGCTATACA-ATT-AAACT
1 CGCACACTTAGTGCT-TA-ATATTCAAACT
76915421 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76915435 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 33 0.85
29 5 0.13
30 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATATTCAAACT
Found at i:76916554 original size:17 final size:18
Alignment explanation
Indices: 76916517--76916554 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
76916507 CACTTTTTTT
76916517 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
76916536 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
76916553 TT
1 TT
76916555 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:76923168 original size:29 final size:29
Alignment explanation
Indices: 76923107--76923205 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
76923097 ACAGTAAGTC
76923107 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
76923135 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
76923164 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
76923192 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76923206 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:76924329 original size:17 final size:18
Alignment explanation
Indices: 76924292--76924329 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
76924282 CACTTTTTTT
76924292 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
76924311 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
76924328 TT
1 TT
76924330 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:76928833 original size:49 final size:49
Alignment explanation
Indices: 76928776--76928874 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
76928766 TATACATCAC
76928776 AAGTATCAGTCACAGATTATAAGATTGTCCTAAAATCACCCTCATAGAT
1 AAGTATCAGTCACAGATTATAAGATTGTCCTAAAATCACCCTCATAGAT
* *
76928825 AAGTATCAGTCATAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
1 AAGTATCAGTCACAGATTATAAGATTGTCCTAAAATCACCCTCATAGAT
76928874 A
1 A
76928875 GAACTTACTC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (49 bp):
AAGTATCAGTCACAGATTATAAGATTGTCCTAAAATCACCCTCATAGAT
Found at i:76929143 original size:48 final size:47
Alignment explanation
Indices: 76929072--76929552 Score: 342
Period size: 48 Copynumber: 9.8 Consensus size: 47
76929062 GGTAAATTGT
* * *
76929072 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCACATGTCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-TCAAGGC
* * * **
76929120 CGATGACATGCCCCAGACATGGTCTTACACTAGCT-ATCGTCTCAATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA-CAT-TCAAGGC
* * * * * * *
76929168 CGATTCCATGTCTCAGACATGGTCTTACAGTGGCTCTCA-TAAAGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTCAA--GGC
* * *
76929216 TGATGCCATGT-CCAGACATGGTCTTACACTAGCACACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-TCAAGGC
* * *
76929263 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-TAAAGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTCAA--GGC
* * *
76929311 CGATGCAATGTCCTAGACATGGTCTTACACTAGTCTTACACTGGCTCTCATAAAGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-C-T-CAC---AT-TC---AA--GGC
** * * *
76929370 ATATGCCATGTCCCAGACACGGTCTTACACTAGCACACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-TCAAGGC
* * *
76929418 CGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCA-TAAAGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTCAA--GGC
* ** * **
76929466 TGATGTTATGTCCCAGACATGGTCTTACACTAGCACACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-TCAAGGC
* * *
76929514 CAATGCCATGTCCTAGACATGGTCTTACACTAGCACACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
76929553 ATCACCCAAT
Statistics
Matches: 335, Mismatches: 74, Indels: 48
0.73 0.16 0.11
Matches are distributed among these distances:
46 9 0.03
47 33 0.10
48 238 0.71
49 4 0.01
50 6 0.02
51 2 0.01
53 3 0.01
56 4 0.01
58 1 0.00
59 35 0.10
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTCAAGGC
Found at i:76929273 original size:95 final size:95
Alignment explanation
Indices: 76929074--76929343 Score: 287
Period size: 95 Copynumber: 2.8 Consensus size: 95
76929064 TAAATTGTCG
* * * * * *
76929074 ATGCCATGTCCTAGACATGGTCTTACATTGGCTCACATGTCAA--GGCCGATG-ACATGCCCCAG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--TAAAGTGGCCGATGCA-ATG-TCCAG
* * * * *
76929136 ACATGGTCTTACACTAGCTATCGTCTCAATACCG
62 ACATGGTCTTACACTAGCTAACATATCAACACCA
* * * * ** *
76929170 ATTCCATGTCTCAGACATGGTCTTACAGTGGCTCTCATAAAGTGGTTGATGCCATGTCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAATGTCCAGACAT
*
76929235 GGTCTTACACTAGC-ACACATATCAACGCCA
66 GGTCTTACACTAGCTA-ACATATCAACACCA
76929265 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAATGTCC-AGACA
76929330 TGGTCTTACACTAG
65 TGGTCTTACACTAG
76929344 TCTTACACTG
Statistics
Matches: 146, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
94 4 0.03
95 82 0.56
96 60 0.41
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAATGTCCAGACAT
GGTCTTACACTAGCTAACATATCAACACCA
Found at i:76929381 original size:59 final size:59
Alignment explanation
Indices: 76929284--76929402 Score: 184
Period size: 59 Copynumber: 2.0 Consensus size: 59
76929274 CCCAGACATG
* * *
76929284 GTCTTACACTAGCTCTCATAAAGTGGCCGATGCAATGTCCTAGACATGGTCTTACACTA
1 GTCTTACACTAGCTCTCATAAAGTGGCAGATGCAATGTCCCAGACACGGTCTTACACTA
* * *
76929343 GTCTTACACTGGCTCTCATAAAGTGGCATATGCCATGTCCCAGACACGGTCTTACACTA
1 GTCTTACACTAGCTCTCATAAAGTGGCAGATGCAATGTCCCAGACACGGTCTTACACTA
76929402 G
1 G
76929403 CACACATATC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (59 bp):
GTCTTACACTAGCTCTCATAAAGTGGCAGATGCAATGTCCCAGACACGGTCTTACACTA
Found at i:76929425 original size:155 final size:154
Alignment explanation
Indices: 76929189--76929498 Score: 514
Period size: 155 Copynumber: 2.0 Consensus size: 154
76929179 CTCAGACATG
* * *
76929189 GTCTTACAGTGGCTCTCATAAAGTGGTTGATGCCATGTCCAGACATGGTCTTACACTAGCACACA
1 GTCTTACACTGGCTCTCATAAAGTGGATGATGCCATGTCCAGACACGGTCTTACACTAGCACACA
76929254 TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAA
66 TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAA
*
76929319 TGTCCTAGACATGGTCTTACACTA
131 TGTCCCAGACATGGTCTTACACTA
76929343 GTCTTACACTGGCTCTCATAAAGTGGCAT-ATGCCATGTCCCAGACACGGTCTTACACTAGCACA
1 GTCTTACACTGGCTCTCATAAAGTGG-ATGATGCCATGT-CCAGACACGGTCTTACACTAGCACA
* * * *
76929407 CATATCAACGCCGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAAAGTGGCTGATGT
64 CATATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGC
*
76929472 TATGTCCCAGACATGGTCTTACACTA
129 AATGTCCCAGACATGGTCTTACACTA
76929498 G
1 G
76929499 CACACATATC
Statistics
Matches: 145, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
154 34 0.23
155 111 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (154 bp):
GTCTTACACTGGCTCTCATAAAGTGGATGATGCCATGTCCAGACACGGTCTTACACTAGCACACA
TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAA
TGTCCCAGACATGGTCTTACACTA
Found at i:76929600 original size:49 final size:47
Alignment explanation
Indices: 76929481--76929626 Score: 188
Period size: 48 Copynumber: 3.0 Consensus size: 47
76929471 TTATGTCCCA
* * * *
76929481 GACATGGTCTTACACTAGCACACATATCAACACCAA-TGCCATGTCCTA
1 GACATGGTCTTACACTAGCACACATATC-AC-CCAATTGTCATGGCATG
76929529 GACATGGTCTTACACTAGCACACA-ATCACCCAATTGTCATGGCATG
1 GACATGGTCTTACACTAGCACACATATCACCCAATTGTCATGGCATG
*
76929575 GTATCCATGGTCTTACACTAGCACACATATCGCCCAATTGTCATGGCATG
1 G-A--CATGGTCTTACACTAGCACACATATCACCCAATTGTCATGGCATG
76929625 GA
1 GA
76929627 TAGCCAATCT
Statistics
Matches: 88, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
45 4 0.05
46 11 0.12
47 4 0.05
48 24 0.27
49 23 0.26
50 22 0.25
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (47 bp):
GACATGGTCTTACACTAGCACACATATCACCCAATTGTCATGGCATG
Found at i:76929952 original size:17 final size:17
Alignment explanation
Indices: 76929930--76929988 Score: 109
Period size: 17 Copynumber: 3.4 Consensus size: 17
76929920 ATATAACCCA
76929930 CATTTTGGCAAAATGAC
1 CATTTTGGCAAAATGAC
76929947 CATTTTGGCAAAATGAC
1 CATTTTGGCAAAATGAC
76929964 CATTTTTGGCAAAATGAC
1 CA-TTTTGGCAAAATGAC
76929982 CATTTTG
1 CATTTTG
76929989 CCCCTAGACT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
17 24 0.59
18 17 0.41
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (17 bp):
CATTTTGGCAAAATGAC
Found at i:76929972 original size:18 final size:18
Alignment explanation
Indices: 76929932--76929987 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
76929922 ATAACCCACA
76929932 TTTTGGCAAAATGACCA-
1 TTTTGGCAAAATGACCAT
76929949 TTTTGGCAAAATGACCAT
1 TTTTGGCAAAATGACCAT
76929967 TTTTGGCAAAATGACCAT
1 TTTTGGCAAAATGACCAT
76929985 TTT
1 TTT
76929988 GCCCCTAGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 17 0.45
18 21 0.55
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (18 bp):
TTTTGGCAAAATGACCAT
Found at i:76933963 original size:28 final size:28
Alignment explanation
Indices: 76933931--76934000 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 28
76933921 ACAGTAAGTC
76933931 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATT-AAACT
76933959 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
76933987 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76934001 CAATCTCATT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
28 34 0.85
29 5 0.12
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATTAAACT
Found at i:76941731 original size:29 final size:29
Alignment explanation
Indices: 76941672--76941770 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
76941662 ACAGTAAGTC
*
76941672 CGCACACTTAGTACT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
76941700 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
76941729 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
76941757 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76941771 CAATCTCATT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 33 0.49
29 34 0.50
30 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:76947401 original size:49 final size:49
Alignment explanation
Indices: 76947344--76947442 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
76947334 TATACATCAC
76947344 AAGTATCAGTCACAGATTATAAGATTGTCCTAAAATCACCCTCATAGAT
1 AAGTATCAGTCACAGATTATAAGATTGTCCTAAAATCACCCTCATAGAT
* *
76947393 AAGTATCAGTCATAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
1 AAGTATCAGTCACAGATTATAAGATTGTCCTAAAATCACCCTCATAGAT
76947442 A
1 A
76947443 GAACTTACTC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (49 bp):
AAGTATCAGTCACAGATTATAAGATTGTCCTAAAATCACCCTCATAGAT
Found at i:76947711 original size:48 final size:47
Alignment explanation
Indices: 76947640--76948121 Score: 344
Period size: 48 Copynumber: 9.9 Consensus size: 47
76947630 GGTAAATTGT
* * *
76947640 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCACATGTCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-TCAAGGC
* * * **
76947688 CGATGACATGCCCCAGACATGGTCTTACACTAGCT-ATCGTCTCAATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA-CAT-TCAAGGC
* * * * * * *
76947736 CGATTCCATGTCTCAGACATGGTCTTACAGTGGCTCTCA-TAAAGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTCAA--GGC
* * *
76947784 TGATGCCATGT-CCAGACATGGTCTTACACTAGCACACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-TCAAGGC
* * *
76947831 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-TAAAGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTCAA--GGC
* * *
76947879 CGATGCAATGTCCTAGACATGGTCTTACACTAGTCTTACACTGGCTCTCATAAAGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-C-T-CAC---AT-TC---AA--GGC
** * * *
76947938 ATATGCCATGTCCCAGACACGGTCTTACACTAGCACACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-TCAAGGC
* * *
76947986 CGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCA-TAAAGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTCAA--GGC
* ** * **
76948034 TGATGTTATGTCCCAGACATGGTCTTACACTAGCACACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-TCAAGGC
* * *
76948082 CAATGCCATGTCCTAGACATGGTCTTACACTAGCACACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT
76948122 ATCACCCAAT
Statistics
Matches: 336, Mismatches: 74, Indels: 48
0.73 0.16 0.10
Matches are distributed among these distances:
46 9 0.03
47 33 0.10
48 239 0.71
49 4 0.01
50 6 0.02
51 2 0.01
53 3 0.01
56 4 0.01
58 1 0.00
59 35 0.10
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATTCAAGGC
Found at i:76947841 original size:95 final size:95
Alignment explanation
Indices: 76947642--76947911 Score: 287
Period size: 95 Copynumber: 2.8 Consensus size: 95
76947632 TAAATTGTCG
* * * * * *
76947642 ATGCCATGTCCTAGACATGGTCTTACATTGGCTCACATGTCAA--GGCCGATG-ACATGCCCCAG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--TAAAGTGGCCGATGCA-ATG-TCCAG
* * * * *
76947704 ACATGGTCTTACACTAGCTATCGTCTCAATACCG
62 ACATGGTCTTACACTAGCTAACATATCAACACCA
* * * * ** *
76947738 ATTCCATGTCTCAGACATGGTCTTACAGTGGCTCTCATAAAGTGGTTGATGCCATGTCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAATGTCCAGACAT
*
76947803 GGTCTTACACTAGC-ACACATATCAACGCCA
66 GGTCTTACACTAGCTA-ACATATCAACACCA
76947833 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAATGTCC-AGACA
76947898 TGGTCTTACACTAG
65 TGGTCTTACACTAG
76947912 TCTTACACTG
Statistics
Matches: 146, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
94 4 0.03
95 82 0.56
96 60 0.41
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAATGTCCAGACAT
GGTCTTACACTAGCTAACATATCAACACCA
Found at i:76947949 original size:59 final size:59
Alignment explanation
Indices: 76947852--76947970 Score: 184
Period size: 59 Copynumber: 2.0 Consensus size: 59
76947842 CCCAGACATG
* * *
76947852 GTCTTACACTAGCTCTCATAAAGTGGCCGATGCAATGTCCTAGACATGGTCTTACACTA
1 GTCTTACACTAGCTCTCATAAAGTGGCAGATGCAATGTCCCAGACACGGTCTTACACTA
* * *
76947911 GTCTTACACTGGCTCTCATAAAGTGGCATATGCCATGTCCCAGACACGGTCTTACACTA
1 GTCTTACACTAGCTCTCATAAAGTGGCAGATGCAATGTCCCAGACACGGTCTTACACTA
76947970 G
1 G
76947971 CACACATATC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (59 bp):
GTCTTACACTAGCTCTCATAAAGTGGCAGATGCAATGTCCCAGACACGGTCTTACACTA
Found at i:76947993 original size:155 final size:154
Alignment explanation
Indices: 76947757--76948066 Score: 514
Period size: 155 Copynumber: 2.0 Consensus size: 154
76947747 CTCAGACATG
* * *
76947757 GTCTTACAGTGGCTCTCATAAAGTGGTTGATGCCATGTCCAGACATGGTCTTACACTAGCACACA
1 GTCTTACACTGGCTCTCATAAAGTGGATGATGCCATGTCCAGACACGGTCTTACACTAGCACACA
76947822 TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAA
66 TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAA
*
76947887 TGTCCTAGACATGGTCTTACACTA
131 TGTCCCAGACATGGTCTTACACTA
76947911 GTCTTACACTGGCTCTCATAAAGTGGCAT-ATGCCATGTCCCAGACACGGTCTTACACTAGCACA
1 GTCTTACACTGGCTCTCATAAAGTGG-ATGATGCCATGT-CCAGACACGGTCTTACACTAGCACA
* * * *
76947975 CATATCAACGCCGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAAAGTGGCTGATGT
64 CATATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGC
*
76948040 TATGTCCCAGACATGGTCTTACACTA
129 AATGTCCCAGACATGGTCTTACACTA
76948066 G
1 G
76948067 CACACATATC
Statistics
Matches: 145, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
154 34 0.23
155 111 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (154 bp):
GTCTTACACTGGCTCTCATAAAGTGGATGATGCCATGTCCAGACACGGTCTTACACTAGCACACA
TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCGATGCAA
TGTCCCAGACATGGTCTTACACTA
Found at i:76948122 original size:48 final size:48
Alignment explanation
Indices: 76947940--76948174 Score: 235
Period size: 48 Copynumber: 4.9 Consensus size: 48
76947930 AAAGTGGCAT
* *
76947940 ATGCCATGTCCCAGACACGGTCTTACACTAGCACACATATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCA
* * * * **
76947988 ATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATA--AAGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA--CGCCA
** *
76948036 ATGTTATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCA
*
76948084 ATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATC-AC-CCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCA
* * ***
76948130 ATTGTCATGGCATGGTATCCATGGTCTTACACTAGCACACATATC
1 A-TGCCATGTCCCAG-A--CATGGTCTTACACTAGCACACATATC
76948175 GCCCAATTGT
Statistics
Matches: 157, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
46 6 0.04
47 11 0.07
48 112 0.71
50 28 0.18
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCA
Found at i:76948173 original size:50 final size:47
Alignment explanation
Indices: 76948049--76948195 Score: 197
Period size: 50 Copynumber: 3.0 Consensus size: 47
76948039 TTATGTCCCA
* * * *
76948049 GACATGGTCTTACACTAGCACACATATCAACACCAA-TGCCATGTCCTA
1 GACATGGTCTTACACTAGCACACATATC-AC-CCAATTGTCATGGCATG
76948097 GACATGGTCTTACACTAGCACACATATCACCCAATTGTCATGGCATG
1 GACATGGTCTTACACTAGCACACATATCACCCAATTGTCATGGCATG
*
76948144 GTATCCATGGTCTTACACTAGCACACATATCGCCCAATTGTCATGGCATG
1 G-A--CATGGTCTTACACTAGCACACATATCACCCAATTGTCATGGCATG
76948194 GA
1 GA
76948196 TAGCCAATCT
Statistics
Matches: 90, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
46 4 0.04
47 11 0.12
48 29 0.32
49 1 0.01
50 45 0.50
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (47 bp):
GACATGGTCTTACACTAGCACACATATCACCCAATTGTCATGGCATG
Found at i:76948513 original size:17 final size:17
Alignment explanation
Indices: 76948491--76948548 Score: 116
Period size: 17 Copynumber: 3.4 Consensus size: 17
76948481 TTATAACCCA
76948491 CATTTTGGCAAAATGAC
1 CATTTTGGCAAAATGAC
76948508 CATTTTGGCAAAATGAC
1 CATTTTGGCAAAATGAC
76948525 CATTTTGGCAAAATGAC
1 CATTTTGGCAAAATGAC
76948542 CATTTTG
1 CATTTTG
76948549 CCCCTAGACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 41 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (17 bp):
CATTTTGGCAAAATGAC
Found at i:76958239 original size:21 final size:21
Alignment explanation
Indices: 76958214--76958266 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
76958204 CAGTGGAGAT
76958214 AGGAAAAACAGGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
*
76958235 AGGAAAAACAAGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
*
76958256 AGGAATAACAG
1 AGGAAAAACAG
76958267 TGGCTGTAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.55, C:0.17, G:0.19, T:0.09
Consensus pattern (21 bp):
AGGAAAAACAGGTTCCAAAAC
Found at i:76971013 original size:28 final size:28
Alignment explanation
Indices: 76970973--76971035 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
76970963 TAAAAAATTA
76970973 AGCAATCACCCAAATTATGGTTAAACCC
1 AGCAATCACCCAAATTATGGTTAAACCC
76971001 AGCAATCACCCAAATTATGGTTAAACCC
1 AGCAATCACCCAAATTATGGTTAAACCC
*
76971029 AACAATC
1 AGCAATC
76971036 TACTCCACAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.41, C:0.29, G:0.10, T:0.21
Consensus pattern (28 bp):
AGCAATCACCCAAATTATGGTTAAACCC
Found at i:76971650 original size:3 final size:3
Alignment explanation
Indices: 76971644--76971675 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
76971634 ATTATTATTA
*
76971644 TTG TTG TTG TTG TTG TTG TTG TCG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
76971676 TTCGTTCGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.03, G:0.31, T:0.66
Consensus pattern (3 bp):
TTG
Found at i:76971680 original size:12 final size:12
Alignment explanation
Indices: 76971644--76971681 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
76971634 ATTATTATTA
76971644 TTGTTGTTGTT-G
1 TTGTTGTT-TTCG
*
76971656 TTGTTGTTGTCG
1 TTGTTGTTTTCG
76971668 TTGTTGTTTTCG
1 TTGTTGTTTTCG
76971680 TT
1 TT
76971682 CGTCGTAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 1 0.04
12 22 0.96
ACGTcount: A:0.00, C:0.05, G:0.29, T:0.66
Consensus pattern (12 bp):
TTGTTGTTTTCG
Found at i:76978923 original size:18 final size:19
Alignment explanation
Indices: 76978902--76978952 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
76978892 AAAAACTGAT
76978902 TTTCCAACAAAAAT-ACTA
1 TTTCCAACAAAAATGACTA
*
76978920 TTTCC-ATAAAAATGACTA
1 TTTCCAACAAAAATGACTA
*
76978938 TTTTCAACTAAAAAT
1 TTTCCAAC-AAAAAT
76978953 TACTTTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 7 0.26
18 13 0.48
19 1 0.04
20 6 0.22
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (19 bp):
TTTCCAACAAAAATGACTA
Found at i:76979497 original size:15 final size:15
Alignment explanation
Indices: 76979477--76979511 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
76979467 TTATATATTA
**
76979477 AAACTATAGGCTGTG
1 AAACTATAAACTGTG
76979492 AAACTATAAACTGTG
1 AAACTATAAACTGTG
76979507 AAACT
1 AAACT
76979512 GTAGATAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (15 bp):
AAACTATAAACTGTG
Found at i:76986250 original size:28 final size:28
Alignment explanation
Indices: 76986210--76986266 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
76986200 AGTGTAATGA
*
76986210 TAAAATTTGATTTAATTATTTATACTAT
1 TAAAATTTGATTTAATGATTTATACTAT
76986238 TAAAATTTGATTTAATGATTTATACTAT
1 TAAAATTTGATTTAATGATTTATACTAT
76986266 T
1 T
76986267 TGAACGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.53
Consensus pattern (28 bp):
TAAAATTTGATTTAATGATTTATACTAT
Done.